2016-10-24 15:48:22 +01:00
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/*************************************************************************************
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Grid physics library, www.github.com/paboyle/Grid
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Source file: ./lib/parallelIO/IldgIO.h
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Copyright (C) 2015
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This program is free software; you can redistribute it and/or modify
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it under the terms of the GNU General Public License as published by
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the Free Software Foundation; either version 2 of the License, or
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(at your option) any later version.
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This program is distributed in the hope that it will be useful,
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but WITHOUT ANY WARRANTY; without even the implied warranty of
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MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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GNU General Public License for more details.
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You should have received a copy of the GNU General Public License along
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with this program; if not, write to the Free Software Foundation, Inc.,
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51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
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See the full license in the file "LICENSE" in the top level distribution
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directory
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*************************************************************************************/
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2018-01-13 00:01:58 +00:00
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/* END LEGAL */
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2016-10-24 15:48:22 +01:00
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#ifndef GRID_ILDG_IO_H
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#define GRID_ILDG_IO_H
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2017-06-18 00:11:02 +01:00
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#ifdef HAVE_LIME
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2016-10-24 15:48:22 +01:00
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#include <algorithm>
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#include <fstream>
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#include <iomanip>
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#include <iostream>
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#include <map>
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#include <pwd.h>
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#include <sys/utsname.h>
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#include <unistd.h>
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2018-01-13 00:01:58 +00:00
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//C-Lime is a must have for this functionality
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2017-06-19 01:01:48 +01:00
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extern "C" {
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2016-10-24 15:48:22 +01:00
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#include "lime.h"
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}
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2018-01-13 00:01:58 +00:00
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NAMESPACE_BEGIN(Grid);
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2016-10-24 15:48:22 +01:00
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2018-01-13 00:01:58 +00:00
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/////////////////////////////////
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// Encode word types as strings
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/////////////////////////////////
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template<class word> inline std::string ScidacWordMnemonic(void){ return std::string("unknown"); }
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template<> inline std::string ScidacWordMnemonic<double> (void){ return std::string("D"); }
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template<> inline std::string ScidacWordMnemonic<float> (void){ return std::string("F"); }
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template<> inline std::string ScidacWordMnemonic< int32_t>(void){ return std::string("I32_t"); }
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template<> inline std::string ScidacWordMnemonic<uint32_t>(void){ return std::string("U32_t"); }
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template<> inline std::string ScidacWordMnemonic< int64_t>(void){ return std::string("I64_t"); }
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template<> inline std::string ScidacWordMnemonic<uint64_t>(void){ return std::string("U64_t"); }
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2017-06-18 00:11:02 +01:00
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2018-01-13 00:01:58 +00:00
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/////////////////////////////////////////
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// Encode a generic tensor as a string
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/////////////////////////////////////////
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template<class vobj> std::string ScidacRecordTypeString(int &colors, int &spins, int & typesize,int &datacount) {
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2017-06-18 00:11:02 +01:00
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2018-01-13 00:01:58 +00:00
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typedef typename getPrecision<vobj>::real_scalar_type stype;
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2017-06-18 00:11:02 +01:00
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2018-01-13 00:01:58 +00:00
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int _ColourN = indexRank<ColourIndex,vobj>();
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int _ColourScalar = isScalar<ColourIndex,vobj>();
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int _ColourVector = isVector<ColourIndex,vobj>();
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int _ColourMatrix = isMatrix<ColourIndex,vobj>();
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2017-06-18 00:11:02 +01:00
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2018-01-13 00:01:58 +00:00
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int _SpinN = indexRank<SpinIndex,vobj>();
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int _SpinScalar = isScalar<SpinIndex,vobj>();
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int _SpinVector = isVector<SpinIndex,vobj>();
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int _SpinMatrix = isMatrix<SpinIndex,vobj>();
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2017-06-18 00:11:02 +01:00
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2018-01-13 00:01:58 +00:00
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int _LorentzN = indexRank<LorentzIndex,vobj>();
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int _LorentzScalar = isScalar<LorentzIndex,vobj>();
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int _LorentzVector = isVector<LorentzIndex,vobj>();
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int _LorentzMatrix = isMatrix<LorentzIndex,vobj>();
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2017-06-18 00:11:02 +01:00
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2018-01-13 00:01:58 +00:00
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std::stringstream stream;
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2017-06-18 00:11:02 +01:00
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2018-01-13 00:01:58 +00:00
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stream << "GRID_";
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stream << ScidacWordMnemonic<stype>();
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2017-06-18 00:11:02 +01:00
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2018-01-13 00:01:58 +00:00
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if ( _LorentzVector ) stream << "_LorentzVector"<<_LorentzN;
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if ( _LorentzMatrix ) stream << "_LorentzMatrix"<<_LorentzN;
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2017-06-18 00:11:02 +01:00
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2018-01-13 00:01:58 +00:00
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if ( _SpinVector ) stream << "_SpinVector"<<_SpinN;
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if ( _SpinMatrix ) stream << "_SpinMatrix"<<_SpinN;
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2017-06-18 00:11:02 +01:00
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2018-01-13 00:01:58 +00:00
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if ( _ColourVector ) stream << "_ColourVector"<<_ColourN;
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if ( _ColourMatrix ) stream << "_ColourMatrix"<<_ColourN;
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2017-06-18 00:11:02 +01:00
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2018-01-13 00:01:58 +00:00
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if ( _ColourScalar && _LorentzScalar && _SpinScalar ) stream << "_Complex";
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2017-06-18 00:11:02 +01:00
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2018-01-13 00:01:58 +00:00
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typesize = sizeof(typename vobj::scalar_type);
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2017-06-18 00:11:02 +01:00
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2018-01-13 00:01:58 +00:00
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if ( _ColourMatrix ) typesize*= _ColourN*_ColourN;
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else typesize*= _ColourN;
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2017-06-18 00:11:02 +01:00
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2018-01-13 00:01:58 +00:00
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if ( _SpinMatrix ) typesize*= _SpinN*_SpinN;
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else typesize*= _SpinN;
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2017-06-18 00:11:02 +01:00
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2018-01-13 00:01:58 +00:00
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colors = _ColourN;
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spins = _SpinN;
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datacount = _LorentzN;
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2017-06-18 00:11:02 +01:00
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2018-01-13 00:01:58 +00:00
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return stream.str();
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}
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2017-06-18 00:11:02 +01:00
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2018-01-13 00:01:58 +00:00
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template<class vobj> std::string ScidacRecordTypeString(Lattice<vobj> & lat,int &colors, int &spins, int & typesize,int &datacount) {
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return ScidacRecordTypeString<vobj>(colors,spins,typesize,datacount);
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};
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////////////////////////////////////////////////////////////
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// Helper to fill out metadata
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////////////////////////////////////////////////////////////
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template<class vobj> void ScidacMetaData(Lattice<vobj> & field,
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FieldMetaData &header,
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scidacRecord & _scidacRecord,
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scidacFile & _scidacFile)
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{
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typedef typename getPrecision<vobj>::real_scalar_type stype;
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/////////////////////////////////////
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// Pull Grid's metadata
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/////////////////////////////////////
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PrepareMetaData(field,header);
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/////////////////////////////////////
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// Scidac Private File structure
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/////////////////////////////////////
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_scidacFile = scidacFile(field._grid);
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/////////////////////////////////////
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// Scidac Private Record structure
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/////////////////////////////////////
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scidacRecord sr;
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sr.datatype = ScidacRecordTypeString(field,sr.colors,sr.spins,sr.typesize,sr.datacount);
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sr.date = header.creation_date;
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sr.precision = ScidacWordMnemonic<stype>();
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sr.recordtype = GRID_IO_FIELD;
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_scidacRecord = sr;
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// std::cout << GridLogMessage << "Build SciDAC datatype " <<sr.datatype<<std::endl;
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}
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2017-06-18 00:11:02 +01:00
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2018-01-13 00:01:58 +00:00
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///////////////////////////////////////////////////////
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// Scidac checksum
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///////////////////////////////////////////////////////
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static int scidacChecksumVerify(scidacChecksum &scidacChecksum_,uint32_t scidac_csuma,uint32_t scidac_csumb)
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{
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uint32_t scidac_checksuma = stoull(scidacChecksum_.suma,0,16);
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uint32_t scidac_checksumb = stoull(scidacChecksum_.sumb,0,16);
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if ( scidac_csuma !=scidac_checksuma) return 0;
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if ( scidac_csumb !=scidac_checksumb) return 0;
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return 1;
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}
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2017-06-18 00:11:02 +01:00
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////////////////////////////////////////////////////////////////////////////////////
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// Lime, ILDG and Scidac I/O classes
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////////////////////////////////////////////////////////////////////////////////////
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2017-06-19 01:01:48 +01:00
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class GridLimeReader : public BinaryIO {
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2018-01-13 00:01:58 +00:00
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public:
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///////////////////////////////////////////////////
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// FIXME: format for RNG? Now just binary out instead
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///////////////////////////////////////////////////
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FILE *File;
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LimeReader *LimeR;
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std::string filename;
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/////////////////////////////////////////////
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// Open the file
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/////////////////////////////////////////////
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void open(const std::string &_filename)
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{
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filename= _filename;
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File = fopen(filename.c_str(), "r");
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LimeR = limeCreateReader(File);
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}
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/////////////////////////////////////////////
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// Close the file
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/////////////////////////////////////////////
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void close(void){
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fclose(File);
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// limeDestroyReader(LimeR);
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}
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2017-06-11 23:14:10 +01:00
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2017-06-18 00:11:02 +01:00
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////////////////////////////////////////////
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// Read a generic lattice field and verify checksum
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////////////////////////////////////////////
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template<class vobj>
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2017-06-19 01:01:48 +01:00
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void readLimeLatticeBinaryObject(Lattice<vobj> &field,std::string record_name)
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2017-06-18 00:11:02 +01:00
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{
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typedef typename vobj::scalar_object sobj;
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scidacChecksum scidacChecksum_;
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uint32_t nersc_csum,scidac_csuma,scidac_csumb;
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2017-06-11 23:14:10 +01:00
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2017-06-18 00:11:02 +01:00
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std::string format = getFormatString<vobj>();
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2017-06-11 23:14:10 +01:00
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2017-06-18 00:11:02 +01:00
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while ( limeReaderNextRecord(LimeR) == LIME_SUCCESS ) {
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2017-06-22 18:53:11 +01:00
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uint64_t file_bytes =limeReaderBytes(LimeR);
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// std::cout << GridLogMessage << limeReaderType(LimeR) << " "<< file_bytes <<" bytes "<<std::endl;
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// std::cout << GridLogMessage<< " readLimeObject seeking "<< record_name <<" found record :" <<limeReaderType(LimeR) <<std::endl;
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if ( !strncmp(limeReaderType(LimeR), record_name.c_str(),strlen(record_name.c_str()) ) ) {
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// std::cout << GridLogMessage<< " readLimeLatticeBinaryObject matches ! " <<std::endl;
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2017-06-18 00:11:02 +01:00
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2017-06-22 18:53:11 +01:00
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uint64_t PayloadSize = sizeof(sobj) * field._grid->_gsites;
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// std::cout << "R sizeof(sobj)= " <<sizeof(sobj)<<std::endl;
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// std::cout << "R Gsites " <<field._grid->_gsites<<std::endl;
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// std::cout << "R Payload expected " <<PayloadSize<<std::endl;
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// std::cout << "R file size " <<file_bytes <<std::endl;
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assert(PayloadSize == file_bytes);// Must match or user error
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2017-06-18 00:11:02 +01:00
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2017-10-26 23:34:31 +01:00
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uint64_t offset= ftello(File);
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2017-06-22 18:53:11 +01:00
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// std::cout << " ReadLatticeObject from offset "<<offset << std::endl;
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2017-06-18 00:11:02 +01:00
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BinarySimpleMunger<sobj,sobj> munge;
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2017-06-22 18:53:11 +01:00
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BinaryIO::readLatticeObject< vobj, sobj >(field, filename, munge, offset, format,nersc_csum,scidac_csuma,scidac_csumb);
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2017-06-18 00:11:02 +01:00
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/////////////////////////////////////////////
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// Insist checksum is next record
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/////////////////////////////////////////////
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2017-06-22 18:53:11 +01:00
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readLimeObject(scidacChecksum_,std::string("scidacChecksum"),std::string(SCIDAC_CHECKSUM));
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2017-06-18 00:11:02 +01:00
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/////////////////////////////////////////////
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// Verify checksums
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/////////////////////////////////////////////
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2017-10-27 08:17:49 +01:00
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assert(scidacChecksumVerify(scidacChecksum_,scidac_csuma,scidac_csumb)==1);
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2017-06-18 00:11:02 +01:00
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return;
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}
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2016-10-24 15:48:22 +01:00
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}
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2017-06-11 23:14:10 +01:00
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}
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2017-06-19 01:01:48 +01:00
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////////////////////////////////////////////
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// Read a generic serialisable object
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////////////////////////////////////////////
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template<class serialisable_object>
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void readLimeObject(serialisable_object &object,std::string object_name,std::string record_name)
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{
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std::string xmlstring;
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// should this be a do while; can we miss a first record??
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while ( limeReaderNextRecord(LimeR) == LIME_SUCCESS ) {
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2017-06-22 18:53:11 +01:00
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// std::cout << GridLogMessage<< " readLimeObject seeking "<< record_name <<" found record :" <<limeReaderType(LimeR) <<std::endl;
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2017-06-19 01:01:48 +01:00
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uint64_t nbytes = limeReaderBytes(LimeR);//size of this record (configuration)
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2017-06-22 18:53:11 +01:00
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if ( !strncmp(limeReaderType(LimeR), record_name.c_str(),strlen(record_name.c_str()) ) ) {
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2017-07-03 00:47:42 +01:00
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// std::cout << GridLogMessage<< " readLimeObject matches ! " << record_name <<std::endl;
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2017-06-19 01:01:48 +01:00
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std::vector<char> xmlc(nbytes+1,'\0');
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limeReaderReadData((void *)&xmlc[0], &nbytes, LimeR);
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2017-07-03 00:47:42 +01:00
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// std::cout << GridLogMessage<< " readLimeObject matches XML " << &xmlc[0] <<std::endl;
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2017-07-02 23:33:48 +01:00
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2017-06-19 01:01:48 +01:00
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XmlReader RD(&xmlc[0],"");
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read(RD,object_name,object);
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return;
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}
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}
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assert(0);
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}
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};
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class GridLimeWriter : public BinaryIO {
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2018-01-13 00:01:58 +00:00
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public:
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///////////////////////////////////////////////////
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// FIXME: format for RNG? Now just binary out instead
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// FIXME: collective calls or not ?
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// : must know if I am the I/O boss
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///////////////////////////////////////////////////
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FILE *File;
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LimeWriter *LimeW;
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std::string filename;
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void open(const std::string &_filename) {
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filename= _filename;
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File = fopen(filename.c_str(), "w");
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LimeW = limeCreateWriter(File); assert(LimeW != NULL );
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}
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/////////////////////////////////////////////
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// Close the file
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/////////////////////////////////////////////
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void close(void) {
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fclose(File);
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// limeDestroyWriter(LimeW);
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}
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2017-06-19 01:01:48 +01:00
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///////////////////////////////////////////////////////
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// Lime utility functions
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///////////////////////////////////////////////////////
|
|
|
|
int createLimeRecordHeader(std::string message, int MB, int ME, size_t PayloadSize)
|
|
|
|
{
|
|
|
|
LimeRecordHeader *h;
|
|
|
|
h = limeCreateHeader(MB, ME, const_cast<char *>(message.c_str()), PayloadSize);
|
|
|
|
assert(limeWriteRecordHeader(h, LimeW) >= 0);
|
|
|
|
limeDestroyHeader(h);
|
|
|
|
return LIME_SUCCESS;
|
|
|
|
}
|
|
|
|
////////////////////////////////////////////
|
|
|
|
// Write a generic serialisable object
|
|
|
|
////////////////////////////////////////////
|
|
|
|
template<class serialisable_object>
|
|
|
|
void writeLimeObject(int MB,int ME,serialisable_object &object,std::string object_name,std::string record_name)
|
|
|
|
{
|
|
|
|
std::string xmlstring;
|
|
|
|
{
|
|
|
|
XmlWriter WR("","");
|
|
|
|
write(WR,object_name,object);
|
|
|
|
xmlstring = WR.XmlString();
|
|
|
|
}
|
2017-06-22 18:53:11 +01:00
|
|
|
// std::cout << "WriteLimeObject" << record_name <<std::endl;
|
2017-06-19 01:01:48 +01:00
|
|
|
uint64_t nbytes = xmlstring.size();
|
2017-06-22 18:53:11 +01:00
|
|
|
// std::cout << " xmlstring "<< nbytes<< " " << xmlstring <<std::endl;
|
2017-06-19 01:01:48 +01:00
|
|
|
int err;
|
2017-06-22 18:53:11 +01:00
|
|
|
LimeRecordHeader *h = limeCreateHeader(MB, ME,const_cast<char *>(record_name.c_str()), nbytes);
|
|
|
|
assert(h!= NULL);
|
2017-06-19 01:01:48 +01:00
|
|
|
|
|
|
|
err=limeWriteRecordHeader(h, LimeW); assert(err>=0);
|
|
|
|
err=limeWriteRecordData(&xmlstring[0], &nbytes, LimeW); assert(err>=0);
|
|
|
|
err=limeWriterCloseRecord(LimeW); assert(err>=0);
|
|
|
|
limeDestroyHeader(h);
|
2017-10-26 23:34:31 +01:00
|
|
|
// std::cout << " File offset is now"<<ftello(File) << std::endl;
|
2017-06-19 01:01:48 +01:00
|
|
|
}
|
2017-06-18 00:11:02 +01:00
|
|
|
////////////////////////////////////////////
|
|
|
|
// Write a generic lattice field and csum
|
|
|
|
////////////////////////////////////////////
|
|
|
|
template<class vobj>
|
2017-06-19 01:01:48 +01:00
|
|
|
void writeLimeLatticeBinaryObject(Lattice<vobj> &field,std::string record_name)
|
2017-06-18 00:11:02 +01:00
|
|
|
{
|
|
|
|
////////////////////////////////////////////
|
|
|
|
// Create record header
|
|
|
|
////////////////////////////////////////////
|
|
|
|
typedef typename vobj::scalar_object sobj;
|
|
|
|
int err;
|
|
|
|
uint32_t nersc_csum,scidac_csuma,scidac_csumb;
|
|
|
|
uint64_t PayloadSize = sizeof(sobj) * field._grid->_gsites;
|
2017-06-19 01:01:48 +01:00
|
|
|
createLimeRecordHeader(record_name, 0, 0, PayloadSize);
|
2017-06-18 00:11:02 +01:00
|
|
|
|
2017-06-22 18:53:11 +01:00
|
|
|
// std::cout << "W sizeof(sobj)" <<sizeof(sobj)<<std::endl;
|
|
|
|
// std::cout << "W Gsites " <<field._grid->_gsites<<std::endl;
|
|
|
|
// std::cout << "W Payload expected " <<PayloadSize<<std::endl;
|
|
|
|
|
2017-06-18 00:11:02 +01:00
|
|
|
////////////////////////////////////////////////////////////////////
|
|
|
|
// NB: FILE and iostream are jointly writing disjoint sequences in the
|
|
|
|
// the same file through different file handles (integer units).
|
|
|
|
//
|
|
|
|
// These are both buffered, so why I think this code is right is as follows.
|
|
|
|
//
|
|
|
|
// i) write record header to FILE *File, telegraphing the size.
|
2017-10-26 23:34:31 +01:00
|
|
|
// ii) ftello reads the offset from FILE *File .
|
2017-06-18 00:11:02 +01:00
|
|
|
// iii) iostream / MPI Open independently seek this offset. Write sequence direct to disk.
|
|
|
|
// Closes iostream and flushes.
|
|
|
|
// iv) fseek on FILE * to end of this disjoint section.
|
|
|
|
// v) Continue writing scidac record.
|
|
|
|
////////////////////////////////////////////////////////////////////
|
2017-10-26 23:34:31 +01:00
|
|
|
uint64_t offset = ftello(File);
|
2017-06-22 18:53:11 +01:00
|
|
|
// std::cout << " Writing to offset "<<offset << std::endl;
|
2017-06-18 00:11:02 +01:00
|
|
|
std::string format = getFormatString<vobj>();
|
|
|
|
BinarySimpleMunger<sobj,sobj> munge;
|
|
|
|
BinaryIO::writeLatticeObject<vobj,sobj>(field, filename, munge, offset, format,nersc_csum,scidac_csuma,scidac_csumb);
|
2017-10-26 23:34:31 +01:00
|
|
|
// fseek(File,0,SEEK_END); offset = ftello(File);std::cout << " offset now "<<offset << std::endl;
|
2017-06-18 00:11:02 +01:00
|
|
|
err=limeWriterCloseRecord(LimeW); assert(err>=0);
|
2017-10-26 23:34:31 +01:00
|
|
|
|
2017-06-18 00:11:02 +01:00
|
|
|
////////////////////////////////////////
|
|
|
|
// Write checksum element, propagaing forward from the BinaryIO
|
|
|
|
// Always pair a checksum with a binary object, and close message
|
|
|
|
////////////////////////////////////////
|
|
|
|
scidacChecksum checksum;
|
|
|
|
std::stringstream streama; streama << std::hex << scidac_csuma;
|
|
|
|
std::stringstream streamb; streamb << std::hex << scidac_csumb;
|
|
|
|
checksum.suma= streama.str();
|
|
|
|
checksum.sumb= streamb.str();
|
2017-10-25 23:50:05 +01:00
|
|
|
// std::cout << GridLogMessage<<" writing scidac checksums "<<std::hex<<scidac_csuma<<"/"<<scidac_csumb<<std::dec<<std::endl;
|
2017-06-22 18:53:11 +01:00
|
|
|
writeLimeObject(0,1,checksum,std::string("scidacChecksum"),std::string(SCIDAC_CHECKSUM));
|
2017-06-18 00:11:02 +01:00
|
|
|
}
|
|
|
|
};
|
|
|
|
|
2017-06-19 01:01:48 +01:00
|
|
|
class ScidacWriter : public GridLimeWriter {
|
2018-01-13 00:01:58 +00:00
|
|
|
public:
|
|
|
|
|
|
|
|
template<class SerialisableUserFile>
|
|
|
|
void writeScidacFileRecord(GridBase *grid,SerialisableUserFile &_userFile)
|
|
|
|
{
|
|
|
|
scidacFile _scidacFile(grid);
|
|
|
|
writeLimeObject(1,0,_scidacFile,_scidacFile.SerialisableClassName(),std::string(SCIDAC_PRIVATE_FILE_XML));
|
|
|
|
writeLimeObject(0,1,_userFile,_userFile.SerialisableClassName(),std::string(SCIDAC_FILE_XML));
|
|
|
|
}
|
2017-06-18 00:11:02 +01:00
|
|
|
////////////////////////////////////////////////
|
|
|
|
// Write generic lattice field in scidac format
|
|
|
|
////////////////////////////////////////////////
|
2017-06-22 18:53:11 +01:00
|
|
|
template <class vobj, class userRecord>
|
2017-06-19 01:01:48 +01:00
|
|
|
void writeScidacFieldRecord(Lattice<vobj> &field,userRecord _userRecord)
|
2017-06-18 00:11:02 +01:00
|
|
|
{
|
|
|
|
GridBase * grid = field._grid;
|
2016-10-24 21:57:54 +01:00
|
|
|
|
2017-06-18 00:11:02 +01:00
|
|
|
////////////////////////////////////////
|
|
|
|
// fill the Grid header
|
|
|
|
////////////////////////////////////////
|
|
|
|
FieldMetaData header;
|
|
|
|
scidacRecord _scidacRecord;
|
|
|
|
scidacFile _scidacFile;
|
|
|
|
|
|
|
|
ScidacMetaData(field,header,_scidacRecord,_scidacFile);
|
|
|
|
|
|
|
|
//////////////////////////////////////////////
|
|
|
|
// Fill the Lime file record by record
|
|
|
|
//////////////////////////////////////////////
|
2017-06-19 01:01:48 +01:00
|
|
|
writeLimeObject(1,0,header ,std::string("FieldMetaData"),std::string(GRID_FORMAT)); // Open message
|
|
|
|
writeLimeObject(0,0,_userRecord,_userRecord.SerialisableClassName(),std::string(SCIDAC_RECORD_XML));
|
|
|
|
writeLimeObject(0,0,_scidacRecord,_scidacRecord.SerialisableClassName(),std::string(SCIDAC_PRIVATE_RECORD_XML));
|
|
|
|
writeLimeLatticeBinaryObject(field,std::string(ILDG_BINARY_DATA)); // Closes message with checksum
|
2017-06-18 00:11:02 +01:00
|
|
|
}
|
|
|
|
};
|
|
|
|
|
2017-06-22 18:53:11 +01:00
|
|
|
|
|
|
|
class ScidacReader : public GridLimeReader {
|
2018-01-13 00:01:58 +00:00
|
|
|
public:
|
|
|
|
|
|
|
|
template<class SerialisableUserFile>
|
|
|
|
void readScidacFileRecord(GridBase *grid,SerialisableUserFile &_userFile)
|
|
|
|
{
|
|
|
|
scidacFile _scidacFile(grid);
|
|
|
|
readLimeObject(_scidacFile,_scidacFile.SerialisableClassName(),std::string(SCIDAC_PRIVATE_FILE_XML));
|
|
|
|
readLimeObject(_userFile,_userFile.SerialisableClassName(),std::string(SCIDAC_FILE_XML));
|
|
|
|
}
|
2017-06-22 18:53:11 +01:00
|
|
|
////////////////////////////////////////////////
|
|
|
|
// Write generic lattice field in scidac format
|
|
|
|
////////////////////////////////////////////////
|
|
|
|
template <class vobj, class userRecord>
|
|
|
|
void readScidacFieldRecord(Lattice<vobj> &field,userRecord &_userRecord)
|
|
|
|
{
|
|
|
|
typedef typename vobj::scalar_object sobj;
|
|
|
|
GridBase * grid = field._grid;
|
|
|
|
|
|
|
|
////////////////////////////////////////
|
|
|
|
// fill the Grid header
|
|
|
|
////////////////////////////////////////
|
|
|
|
FieldMetaData header;
|
|
|
|
scidacRecord _scidacRecord;
|
|
|
|
scidacFile _scidacFile;
|
|
|
|
|
|
|
|
//////////////////////////////////////////////
|
|
|
|
// Fill the Lime file record by record
|
|
|
|
//////////////////////////////////////////////
|
|
|
|
readLimeObject(header ,std::string("FieldMetaData"),std::string(GRID_FORMAT)); // Open message
|
|
|
|
readLimeObject(_userRecord,_userRecord.SerialisableClassName(),std::string(SCIDAC_RECORD_XML));
|
|
|
|
readLimeObject(_scidacRecord,_scidacRecord.SerialisableClassName(),std::string(SCIDAC_PRIVATE_RECORD_XML));
|
|
|
|
readLimeLatticeBinaryObject(field,std::string(ILDG_BINARY_DATA));
|
|
|
|
}
|
|
|
|
void skipPastBinaryRecord(void) {
|
|
|
|
std::string rec_name(ILDG_BINARY_DATA);
|
|
|
|
while ( limeReaderNextRecord(LimeR) == LIME_SUCCESS ) {
|
|
|
|
if ( !strncmp(limeReaderType(LimeR), rec_name.c_str(),strlen(rec_name.c_str()) ) ) {
|
|
|
|
skipPastObjectRecord(std::string(SCIDAC_CHECKSUM));
|
|
|
|
return;
|
|
|
|
}
|
|
|
|
}
|
|
|
|
}
|
|
|
|
void skipPastObjectRecord(std::string rec_name) {
|
|
|
|
while ( limeReaderNextRecord(LimeR) == LIME_SUCCESS ) {
|
|
|
|
if ( !strncmp(limeReaderType(LimeR), rec_name.c_str(),strlen(rec_name.c_str()) ) ) {
|
|
|
|
return;
|
|
|
|
}
|
|
|
|
}
|
|
|
|
}
|
|
|
|
void skipScidacFieldRecord() {
|
|
|
|
skipPastObjectRecord(std::string(GRID_FORMAT));
|
|
|
|
skipPastObjectRecord(std::string(SCIDAC_RECORD_XML));
|
|
|
|
skipPastObjectRecord(std::string(SCIDAC_PRIVATE_RECORD_XML));
|
|
|
|
skipPastBinaryRecord();
|
|
|
|
}
|
|
|
|
};
|
|
|
|
|
|
|
|
|
2017-06-19 01:01:48 +01:00
|
|
|
class IldgWriter : public ScidacWriter {
|
2018-01-13 00:01:58 +00:00
|
|
|
public:
|
2016-10-24 15:48:22 +01:00
|
|
|
|
2017-06-18 00:11:02 +01:00
|
|
|
///////////////////////////////////
|
|
|
|
// A little helper
|
|
|
|
///////////////////////////////////
|
2017-06-19 01:01:48 +01:00
|
|
|
void writeLimeIldgLFN(std::string &LFN)
|
2017-06-18 00:11:02 +01:00
|
|
|
{
|
|
|
|
uint64_t PayloadSize = LFN.size();
|
|
|
|
int err;
|
2017-06-19 01:01:48 +01:00
|
|
|
createLimeRecordHeader(ILDG_DATA_LFN, 0 , 0, PayloadSize);
|
|
|
|
err=limeWriteRecordData(const_cast<char*>(LFN.c_str()), &PayloadSize,LimeW); assert(err>=0);
|
2017-06-18 00:11:02 +01:00
|
|
|
err=limeWriterCloseRecord(LimeW); assert(err>=0);
|
|
|
|
}
|
|
|
|
|
|
|
|
////////////////////////////////////////////////////////////////
|
|
|
|
// Special ILDG operations ; gauge configs only.
|
|
|
|
// Don't require scidac records EXCEPT checksum
|
|
|
|
// Use Grid MetaData object if present.
|
|
|
|
////////////////////////////////////////////////////////////////
|
|
|
|
template <class vsimd>
|
2017-06-19 01:01:48 +01:00
|
|
|
void writeConfiguration(Lattice<iLorentzColourMatrix<vsimd> > &Umu,int sequence,std::string LFN,std::string description)
|
2017-06-18 00:11:02 +01:00
|
|
|
{
|
|
|
|
GridBase * grid = Umu._grid;
|
2017-06-11 23:14:10 +01:00
|
|
|
typedef Lattice<iLorentzColourMatrix<vsimd> > GaugeField;
|
|
|
|
typedef iLorentzColourMatrix<vsimd> vobj;
|
|
|
|
typedef typename vobj::scalar_object sobj;
|
2016-10-24 15:48:22 +01:00
|
|
|
|
2017-06-11 23:14:10 +01:00
|
|
|
////////////////////////////////////////
|
2017-06-18 00:11:02 +01:00
|
|
|
// fill the Grid header
|
2017-06-11 23:14:10 +01:00
|
|
|
////////////////////////////////////////
|
|
|
|
FieldMetaData header;
|
2017-06-18 00:11:02 +01:00
|
|
|
scidacRecord _scidacRecord;
|
|
|
|
scidacFile _scidacFile;
|
2016-10-24 21:57:54 +01:00
|
|
|
|
2017-06-18 00:11:02 +01:00
|
|
|
ScidacMetaData(Umu,header,_scidacRecord,_scidacFile);
|
2017-06-11 23:14:10 +01:00
|
|
|
|
2017-06-18 00:11:02 +01:00
|
|
|
std::string format = header.floating_point;
|
2017-06-19 01:01:48 +01:00
|
|
|
header.ensemble_id = description;
|
|
|
|
header.ensemble_label = description;
|
|
|
|
header.sequence_number = sequence;
|
|
|
|
header.ildg_lfn = LFN;
|
2016-10-24 15:48:22 +01:00
|
|
|
|
2017-06-18 00:11:02 +01:00
|
|
|
assert ( (format == std::string("IEEE32BIG"))
|
2018-01-13 00:01:58 +00:00
|
|
|
||(format == std::string("IEEE64BIG")) );
|
2016-10-24 15:48:22 +01:00
|
|
|
|
2017-06-18 00:11:02 +01:00
|
|
|
//////////////////////////////////////////////////////
|
|
|
|
// Fill ILDG header data struct
|
|
|
|
//////////////////////////////////////////////////////
|
|
|
|
ildgFormat ildgfmt ;
|
|
|
|
ildgfmt.field = std::string("su3gauge");
|
|
|
|
|
|
|
|
if ( format == std::string("IEEE32BIG") ) {
|
|
|
|
ildgfmt.precision = 32;
|
|
|
|
} else {
|
|
|
|
ildgfmt.precision = 64;
|
|
|
|
}
|
|
|
|
ildgfmt.version = 1.0;
|
|
|
|
ildgfmt.lx = header.dimension[0];
|
|
|
|
ildgfmt.ly = header.dimension[1];
|
|
|
|
ildgfmt.lz = header.dimension[2];
|
|
|
|
ildgfmt.lt = header.dimension[3];
|
|
|
|
assert(header.nd==4);
|
|
|
|
assert(header.nd==header.dimension.size());
|
2016-10-24 15:48:22 +01:00
|
|
|
|
2017-06-18 00:11:02 +01:00
|
|
|
//////////////////////////////////////////////////////////////////////////////
|
|
|
|
// Fill the USQCD info field
|
|
|
|
//////////////////////////////////////////////////////////////////////////////
|
|
|
|
usqcdInfo info;
|
|
|
|
info.version=1.0;
|
|
|
|
info.plaq = header.plaquette;
|
|
|
|
info.linktr = header.link_trace;
|
|
|
|
|
|
|
|
std::cout << GridLogMessage << " Writing config; IldgIO "<<std::endl;
|
|
|
|
//////////////////////////////////////////////
|
|
|
|
// Fill the Lime file record by record
|
|
|
|
//////////////////////////////////////////////
|
2017-06-19 01:01:48 +01:00
|
|
|
writeLimeObject(1,0,header ,std::string("FieldMetaData"),std::string(GRID_FORMAT)); // Open message
|
|
|
|
writeLimeObject(0,0,_scidacFile,_scidacFile.SerialisableClassName(),std::string(SCIDAC_PRIVATE_FILE_XML));
|
|
|
|
writeLimeObject(0,1,info,info.SerialisableClassName(),std::string(SCIDAC_FILE_XML));
|
|
|
|
writeLimeObject(1,0,_scidacRecord,_scidacRecord.SerialisableClassName(),std::string(SCIDAC_PRIVATE_RECORD_XML));
|
|
|
|
writeLimeObject(0,0,info,info.SerialisableClassName(),std::string(SCIDAC_RECORD_XML));
|
|
|
|
writeLimeObject(0,0,ildgfmt,std::string("ildgFormat") ,std::string(ILDG_FORMAT)); // rec
|
|
|
|
writeLimeIldgLFN(header.ildg_lfn); // rec
|
|
|
|
writeLimeLatticeBinaryObject(Umu,std::string(ILDG_BINARY_DATA)); // Closes message with checksum
|
|
|
|
// limeDestroyWriter(LimeW);
|
2017-06-11 23:14:10 +01:00
|
|
|
fclose(File);
|
2016-10-24 15:48:22 +01:00
|
|
|
}
|
2017-06-19 01:01:48 +01:00
|
|
|
};
|
|
|
|
|
|
|
|
class IldgReader : public GridLimeReader {
|
2018-01-13 00:01:58 +00:00
|
|
|
public:
|
2016-10-24 15:48:22 +01:00
|
|
|
|
2017-06-18 00:11:02 +01:00
|
|
|
////////////////////////////////////////////////////////////////
|
|
|
|
// Read either Grid/SciDAC/ILDG configuration
|
|
|
|
// Don't require scidac records EXCEPT checksum
|
|
|
|
// Use Grid MetaData object if present.
|
|
|
|
// Else use ILDG MetaData object if present.
|
|
|
|
// Else use SciDAC MetaData object if present.
|
|
|
|
////////////////////////////////////////////////////////////////
|
2016-10-24 15:48:22 +01:00
|
|
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template <class vsimd>
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2017-06-19 01:01:48 +01:00
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void readConfiguration(Lattice<iLorentzColourMatrix<vsimd> > &Umu, FieldMetaData &FieldMetaData_) {
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2017-06-11 23:14:10 +01:00
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2016-10-24 15:48:22 +01:00
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typedef Lattice<iLorentzColourMatrix<vsimd> > GaugeField;
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2017-06-18 00:11:02 +01:00
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typedef typename GaugeField::vector_object vobj;
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typedef typename vobj::scalar_object sobj;
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typedef LorentzColourMatrixF fobj;
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typedef LorentzColourMatrixD dobj;
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2016-10-24 21:57:54 +01:00
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2017-06-11 23:14:10 +01:00
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GridBase *grid = Umu._grid;
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2016-10-24 21:57:54 +01:00
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2017-06-11 23:14:10 +01:00
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std::vector<int> dims = Umu._grid->FullDimensions();
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2017-06-18 00:11:02 +01:00
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2017-06-11 23:14:10 +01:00
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assert(dims.size()==4);
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2016-10-24 21:57:54 +01:00
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2017-06-11 23:14:10 +01:00
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// Metadata holders
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ildgFormat ildgFormat_ ;
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std::string ildgLFN_ ;
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scidacChecksum scidacChecksum_;
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usqcdInfo usqcdInfo_ ;
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// track what we read from file
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int found_ildgFormat =0;
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int found_ildgLFN =0;
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int found_scidacChecksum=0;
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int found_usqcdInfo =0;
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int found_ildgBinary =0;
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int found_FieldMetaData =0;
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uint32_t nersc_csum;
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uint32_t scidac_csuma;
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uint32_t scidac_csumb;
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// Binary format
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std::string format;
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//////////////////////////////////////////////////////////////////////////
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// Loop over all records
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// -- Order is poorly guaranteed except ILDG header preceeds binary section.
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// -- Run like an event loop.
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// -- Impose trust hierarchy. Grid takes precedence & look for ILDG, and failing
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// that Scidac.
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// -- Insist on Scidac checksum record.
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//////////////////////////////////////////////////////////////////////////
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while ( limeReaderNextRecord(LimeR) == LIME_SUCCESS ) {
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uint64_t nbytes = limeReaderBytes(LimeR);//size of this record (configuration)
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2017-06-12 00:20:49 +01:00
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2017-06-11 23:14:10 +01:00
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//////////////////////////////////////////////////////////////////
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// If not BINARY_DATA read a string and parse
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//////////////////////////////////////////////////////////////////
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if ( strncmp(limeReaderType(LimeR), ILDG_BINARY_DATA,strlen(ILDG_BINARY_DATA) ) ) {
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// Copy out the string
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std::vector<char> xmlc(nbytes+1,'\0');
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limeReaderReadData((void *)&xmlc[0], &nbytes, LimeR);
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2017-10-25 23:50:05 +01:00
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// std::cout << GridLogMessage<< "Non binary record :" <<limeReaderType(LimeR) <<std::endl; //<<"\n"<<(&xmlc[0])<<std::endl;
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2017-06-11 23:14:10 +01:00
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//////////////////////////////////
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// ILDG format record
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if ( !strncmp(limeReaderType(LimeR), ILDG_FORMAT,strlen(ILDG_FORMAT)) ) {
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XmlReader RD(&xmlc[0],"");
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read(RD,"ildgFormat",ildgFormat_);
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if ( ildgFormat_.precision == 64 ) format = std::string("IEEE64BIG");
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if ( ildgFormat_.precision == 32 ) format = std::string("IEEE32BIG");
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assert( ildgFormat_.lx == dims[0]);
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assert( ildgFormat_.ly == dims[1]);
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assert( ildgFormat_.lz == dims[2]);
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assert( ildgFormat_.lt == dims[3]);
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found_ildgFormat = 1;
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}
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if ( !strncmp(limeReaderType(LimeR), ILDG_DATA_LFN,strlen(ILDG_DATA_LFN)) ) {
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FieldMetaData_.ildg_lfn = std::string(&xmlc[0]);
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found_ildgLFN = 1;
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}
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if ( !strncmp(limeReaderType(LimeR), GRID_FORMAT,strlen(ILDG_FORMAT)) ) {
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XmlReader RD(&xmlc[0],"");
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read(RD,"FieldMetaData",FieldMetaData_);
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format = FieldMetaData_.floating_point;
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assert(FieldMetaData_.dimension[0] == dims[0]);
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assert(FieldMetaData_.dimension[1] == dims[1]);
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assert(FieldMetaData_.dimension[2] == dims[2]);
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assert(FieldMetaData_.dimension[3] == dims[3]);
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found_FieldMetaData = 1;
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}
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2017-06-18 00:11:02 +01:00
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if ( !strncmp(limeReaderType(LimeR), SCIDAC_RECORD_XML,strlen(SCIDAC_RECORD_XML)) ) {
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2017-06-19 08:46:07 +01:00
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std::string xmls(&xmlc[0]);
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// is it a USQCD info field
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if ( xmls.find(std::string("usqcdInfo")) != std::string::npos ) {
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2017-10-25 23:50:05 +01:00
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// std::cout << GridLogMessage<<"...found a usqcdInfo field"<<std::endl;
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2017-06-19 08:46:07 +01:00
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XmlReader RD(&xmlc[0],"");
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read(RD,"usqcdInfo",usqcdInfo_);
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found_usqcdInfo = 1;
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}
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2017-06-11 23:14:10 +01:00
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}
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if ( !strncmp(limeReaderType(LimeR), SCIDAC_CHECKSUM,strlen(SCIDAC_CHECKSUM)) ) {
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XmlReader RD(&xmlc[0],"");
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read(RD,"scidacChecksum",scidacChecksum_);
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found_scidacChecksum = 1;
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}
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} else {
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/////////////////////////////////
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// Binary data
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/////////////////////////////////
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2017-06-18 00:11:02 +01:00
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std::cout << GridLogMessage << "ILDG Binary record found : " ILDG_BINARY_DATA << std::endl;
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2017-10-26 23:34:31 +01:00
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uint64_t offset= ftello(File);
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2017-06-18 00:11:02 +01:00
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if ( format == std::string("IEEE64BIG") ) {
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GaugeSimpleMunger<dobj, sobj> munge;
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BinaryIO::readLatticeObject< vobj, dobj >(Umu, filename, munge, offset, format,nersc_csum,scidac_csuma,scidac_csumb);
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} else {
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GaugeSimpleMunger<fobj, sobj> munge;
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BinaryIO::readLatticeObject< vobj, fobj >(Umu, filename, munge, offset, format,nersc_csum,scidac_csuma,scidac_csumb);
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}
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2017-06-11 23:14:10 +01:00
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found_ildgBinary = 1;
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}
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}
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2016-10-24 21:57:54 +01:00
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2017-06-11 23:14:10 +01:00
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//////////////////////////////////////////////////////
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// Minimally must find binary segment and checksum
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2017-06-18 00:11:02 +01:00
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// Since this is an ILDG reader require ILDG format
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2017-06-11 23:14:10 +01:00
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//////////////////////////////////////////////////////
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assert(found_ildgBinary);
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2017-06-18 00:11:02 +01:00
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assert(found_ildgFormat);
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2017-06-11 23:14:10 +01:00
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assert(found_scidacChecksum);
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2018-01-24 13:15:43 +00:00
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assert(found_ildgLFN==0);
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2016-10-24 15:48:22 +01:00
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2017-06-11 23:14:10 +01:00
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// Must find something with the lattice dimensions
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assert(found_FieldMetaData||found_ildgFormat);
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2016-10-24 15:48:22 +01:00
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2017-06-11 23:14:10 +01:00
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if ( found_FieldMetaData ) {
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2016-10-24 21:57:54 +01:00
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2017-06-18 00:11:02 +01:00
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std::cout << GridLogMessage<<"Grid MetaData was record found: configuration was probably written by Grid ! Yay ! "<<std::endl;
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2016-10-24 15:48:22 +01:00
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2017-06-11 23:14:10 +01:00
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} else {
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2016-10-24 15:48:22 +01:00
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2017-06-11 23:14:10 +01:00
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assert(found_ildgFormat);
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assert ( ildgFormat_.field == std::string("su3gauge") );
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2016-10-24 15:48:22 +01:00
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2017-06-11 23:14:10 +01:00
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///////////////////////////////////////////////////////////////////////////////////////
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// Populate our Grid metadata as best we can
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///////////////////////////////////////////////////////////////////////////////////////
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2016-10-24 15:48:22 +01:00
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2017-06-11 23:14:10 +01:00
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std::ostringstream vers; vers << ildgFormat_.version;
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FieldMetaData_.hdr_version = vers.str();
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FieldMetaData_.data_type = std::string("4D_SU3_GAUGE_3X3");
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2016-10-24 15:48:22 +01:00
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2017-06-18 00:11:02 +01:00
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FieldMetaData_.nd=4;
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FieldMetaData_.dimension.resize(4);
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2016-10-24 15:48:22 +01:00
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2017-06-11 23:14:10 +01:00
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FieldMetaData_.dimension[0] = ildgFormat_.lx ;
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FieldMetaData_.dimension[1] = ildgFormat_.ly ;
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FieldMetaData_.dimension[2] = ildgFormat_.lz ;
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FieldMetaData_.dimension[3] = ildgFormat_.lt ;
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2016-10-24 21:57:54 +01:00
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2017-06-11 23:14:10 +01:00
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if ( found_usqcdInfo ) {
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FieldMetaData_.plaquette = usqcdInfo_.plaq;
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FieldMetaData_.link_trace= usqcdInfo_.linktr;
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2017-06-18 00:11:02 +01:00
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std::cout << GridLogMessage <<"This configuration was probably written by USQCD "<<std::endl;
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std::cout << GridLogMessage <<"USQCD xml record Plaquette : "<<FieldMetaData_.plaquette<<std::endl;
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std::cout << GridLogMessage <<"USQCD xml record LinkTrace : "<<FieldMetaData_.link_trace<<std::endl;
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2017-06-11 23:14:10 +01:00
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} else {
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FieldMetaData_.plaquette = 0.0;
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FieldMetaData_.link_trace= 0.0;
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2017-06-18 00:11:02 +01:00
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std::cout << GridLogWarning << "This configuration is unsafe with no plaquette records that can verify it !!! "<<std::endl;
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2017-06-11 23:14:10 +01:00
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}
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}
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2016-10-24 15:48:22 +01:00
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2017-06-18 00:11:02 +01:00
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////////////////////////////////////////////////////////////
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// Really really want to mandate a scidac checksum
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////////////////////////////////////////////////////////////
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2017-06-11 23:14:10 +01:00
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if ( found_scidacChecksum ) {
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2017-06-18 00:11:02 +01:00
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FieldMetaData_.scidac_checksuma = stoull(scidacChecksum_.suma,0,16);
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FieldMetaData_.scidac_checksumb = stoull(scidacChecksum_.sumb,0,16);
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scidacChecksumVerify(scidacChecksum_,scidac_csuma,scidac_csumb);
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2017-06-11 23:14:10 +01:00
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assert( scidac_csuma ==FieldMetaData_.scidac_checksuma);
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assert( scidac_csumb ==FieldMetaData_.scidac_checksumb);
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std::cout << GridLogMessage<<"SciDAC checksums match " << std::endl;
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2017-06-13 12:00:23 +01:00
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} else {
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std::cout << GridLogWarning<<"SciDAC checksums not found. This is unsafe. " << std::endl;
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2017-06-18 00:11:02 +01:00
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assert(0); // Can I insist always checksum ?
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2017-06-11 23:14:10 +01:00
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}
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2016-10-24 15:48:22 +01:00
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2017-06-11 23:14:10 +01:00
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if ( found_FieldMetaData || found_usqcdInfo ) {
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FieldMetaData checker;
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2017-06-18 00:11:02 +01:00
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GaugeStatistics(Umu,checker);
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2017-06-11 23:14:10 +01:00
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assert(fabs(checker.plaquette - FieldMetaData_.plaquette )<1.0e-5);
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assert(fabs(checker.link_trace - FieldMetaData_.link_trace)<1.0e-5);
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std::cout << GridLogMessage<<"Plaquette and link trace match " << std::endl;
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}
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2016-10-24 15:48:22 +01:00
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}
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2018-01-13 00:01:58 +00:00
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};
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2016-10-24 15:48:22 +01:00
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2018-01-13 00:01:58 +00:00
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NAMESPACE_END(Grid);
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2016-10-26 09:48:01 +01:00
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//HAVE_LIME
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#endif
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2016-10-24 15:48:22 +01:00
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#endif
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