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Merge branch 'develop' into feature/qed-fvol

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This commit is contained in:
Antonin Portelli 2017-01-27 16:59:53 -08:00
commit 28d99b5297
39 changed files with 52 additions and 44 deletions
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9
.gitignore vendored
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@ -104,4 +104,11 @@ lib/fftw/*
# libtool macros # # libtool macros #
################## ##################
m4/lt* m4/lt*
m4/libtool.m4 m4/libtool.m4
# Buck files #
##############
.buck*
buck-out
BUCK
make-bin-BUCK.sh

2
lib/Init.cc
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@ -41,7 +41,7 @@ Author: paboyle <paboyle@ph.ed.ac.uk>
#include <signal.h> #include <signal.h>
#include <iostream> #include <iostream>
#include <iterator> #include <iterator>
#include <Grid.h> #include <Grid/Grid.h>
#include <algorithm> #include <algorithm>
#include <iterator> #include <iterator>
#include <cstdlib> #include <cstdlib>

2
lib/Log.cc
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@ -29,7 +29,7 @@ See the full license in the file "LICENSE" in the top level distribution
directory directory
*************************************************************************************/ *************************************************************************************/
/* END LEGAL */ /* END LEGAL */
#include <Grid.h> #include <Grid/Grid.h>
#include <cxxabi.h> #include <cxxabi.h>

4
lib/PerfCount.cc
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@ -26,8 +26,8 @@ Author: paboyle <paboyle@ph.ed.ac.uk>
*************************************************************************************/ *************************************************************************************/
/* END LEGAL */ /* END LEGAL */
#include <Grid.h> #include <Grid/Grid.h>
#include <PerfCount.h> #include <Grid/PerfCount.h>
namespace Grid { namespace Grid {

6
lib/Stat.cc
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@ -1,6 +1,6 @@
#include <Grid.h> #include <Grid/Grid.h>
#include <PerfCount.h> #include <Grid/PerfCount.h>
#include <Stat.h> #include <Grid/Stat.h>
namespace Grid { namespace Grid {

2
lib/algorithms/approx/MultiShiftFunction.cc
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@ -25,7 +25,7 @@ Author: Azusa Yamaguchi <ayamaguc@staffmail.ed.ac.uk>
See the full license in the file "LICENSE" in the top level distribution directory See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/ *************************************************************************************/
/* END LEGAL */ /* END LEGAL */
#include <Grid.h> #include <Grid/Grid.h>
namespace Grid { namespace Grid {
double MultiShiftFunction::approx(double x) double MultiShiftFunction::approx(double x)

2
lib/algorithms/approx/Remez.cc
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@ -20,7 +20,7 @@
#include<iomanip> #include<iomanip>
#include<cassert> #include<cassert>
#include<algorithms/approx/Remez.h> #include<Grid/algorithms/approx/Remez.h>
// Constructor // Constructor
AlgRemez::AlgRemez(double lower, double upper, long precision) AlgRemez::AlgRemez(double lower, double upper, long precision)

2
lib/algorithms/iterative/Matrix.h
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@ -36,7 +36,7 @@ Author: Peter Boyle <paboyle@ph.ed.ac.uk>
#include <iomanip> #include <iomanip>
#include <complex> #include <complex>
#include <typeinfo> #include <typeinfo>
#include <Grid.h> #include <Grid/Grid.h>
/** Sign function **/ /** Sign function **/

2
lib/communicator/Communicator_base.cc
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@ -25,7 +25,7 @@ Author: Peter Boyle <paboyle@ph.ed.ac.uk>
See the full license in the file "LICENSE" in the top level distribution directory See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/ *************************************************************************************/
/* END LEGAL */ /* END LEGAL */
#include "Grid.h" #include <Grid/Grid.h>
namespace Grid { namespace Grid {
/////////////////////////////////////////////////////////////// ///////////////////////////////////////////////////////////////

2
lib/communicator/Communicator_mpi.cc
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@ -25,7 +25,7 @@ Author: Peter Boyle <paboyle@ph.ed.ac.uk>
See the full license in the file "LICENSE" in the top level distribution directory See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/ *************************************************************************************/
/* END LEGAL */ /* END LEGAL */
#include "Grid.h" #include <Grid/Grid.h>
#include <mpi.h> #include <mpi.h>
namespace Grid { namespace Grid {

2
lib/communicator/Communicator_mpi3.cc
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@ -25,7 +25,7 @@ Author: Peter Boyle <paboyle@ph.ed.ac.uk>
See the full license in the file "LICENSE" in the top level distribution directory See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/ *************************************************************************************/
/* END LEGAL */ /* END LEGAL */
#include "Grid.h" #include <Grid/Grid.h>
#include <mpi.h> #include <mpi.h>
namespace Grid { namespace Grid {

2
lib/communicator/Communicator_none.cc
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@ -25,7 +25,7 @@ Author: Peter Boyle <paboyle@ph.ed.ac.uk>
See the full license in the file "LICENSE" in the top level distribution directory See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/ *************************************************************************************/
/* END LEGAL */ /* END LEGAL */
#include "Grid.h" #include <Grid/Grid.h>
namespace Grid { namespace Grid {
/////////////////////////////////////////////////////////////////////////////////////////////////// ///////////////////////////////////////////////////////////////////////////////////////////////////

2
lib/communicator/Communicator_shmem.cc
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@ -25,7 +25,7 @@ Author: Peter Boyle <paboyle@ph.ed.ac.uk>
See the full license in the file "LICENSE" in the top level distribution directory See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/ *************************************************************************************/
/* END LEGAL */ /* END LEGAL */
#include "Grid.h" #include <Grid/Grid.h>
#include <mpp/shmem.h> #include <mpp/shmem.h>
namespace Grid { namespace Grid {

5
lib/lattice/Lattice_transfer.h
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@ -386,7 +386,8 @@ void InsertSlice(Lattice<vobj> &lowDim,Lattice<vobj> & higherDim,int slice, int
} }
// the above should guarantee that the operations are local // the above should guarantee that the operations are local
PARALLEL_FOR_LOOP // Guido: check the threading here
//PARALLEL_FOR_LOOP
for(int idx=0;idx<lg->lSites();idx++){ for(int idx=0;idx<lg->lSites();idx++){
std::vector<int> lcoor(nl); std::vector<int> lcoor(nl);
std::vector<int> hcoor(nh); std::vector<int> hcoor(nh);
@ -428,7 +429,7 @@ void ExtractSlice(Lattice<vobj> &lowDim, Lattice<vobj> & higherDim,int slice, in
} }
} }
// the above should guarantee that the operations are local // the above should guarantee that the operations are local
PARALLEL_FOR_LOOP //PARALLEL_FOR_LOOP
for(int idx=0;idx<lg->lSites();idx++){ for(int idx=0;idx<lg->lSites();idx++){
std::vector<int> lcoor(nl); std::vector<int> lcoor(nl);
std::vector<int> hcoor(nh); std::vector<int> hcoor(nh);

2
lib/pugixml/pugixml.cc
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@ -14,7 +14,7 @@
#ifndef SOURCE_PUGIXML_CPP #ifndef SOURCE_PUGIXML_CPP
#define SOURCE_PUGIXML_CPP #define SOURCE_PUGIXML_CPP
#include <pugixml/pugixml.h> #include <Grid/pugixml/pugixml.h>
#include <stdlib.h> #include <stdlib.h>
#include <stdio.h> #include <stdio.h>

2
lib/qcd/action/fermion/CayleyFermion5D.cc
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@ -30,7 +30,7 @@ Author: paboyle <paboyle@ph.ed.ac.uk>
/* END LEGAL */ /* END LEGAL */
#include <Grid/Eigen/Dense> #include <Grid/Eigen/Dense>
#include <Grid.h> #include <Grid/Grid.h>
namespace Grid { namespace Grid {

2
lib/qcd/action/fermion/CayleyFermion5Dcache.cc
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@ -29,7 +29,7 @@ Author: paboyle <paboyle@ph.ed.ac.uk>
*************************************************************************************/ *************************************************************************************/
/* END LEGAL */ /* END LEGAL */
#include <Grid.h> #include <Grid/Grid.h>
namespace Grid { namespace Grid {

2
lib/qcd/action/fermion/CayleyFermion5Ddense.cc
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@ -30,7 +30,7 @@ Author: paboyle <paboyle@ph.ed.ac.uk>
/* END LEGAL */ /* END LEGAL */
#include <Grid/Eigen/Dense> #include <Grid/Eigen/Dense>
#include <Grid.h> #include <Grid/Grid.h>
namespace Grid { namespace Grid {

2
lib/qcd/action/fermion/CayleyFermion5Dssp.cc
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@ -29,7 +29,7 @@ Author: paboyle <paboyle@ph.ed.ac.uk>
*************************************************************************************/ *************************************************************************************/
/* END LEGAL */ /* END LEGAL */
#include <Grid.h> #include <Grid/Grid.h>
namespace Grid { namespace Grid {

2
lib/qcd/action/fermion/CayleyFermion5Dvec.cc
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@ -30,7 +30,7 @@ Author: paboyle <paboyle@ph.ed.ac.uk>
/* END LEGAL */ /* END LEGAL */
#include <Grid.h> #include <Grid/Grid.h>
namespace Grid { namespace Grid {

2
lib/qcd/action/fermion/ContinuedFractionFermion5D.cc
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@ -26,7 +26,7 @@ Author: Peter Boyle <paboyle@ph.ed.ac.uk>
See the full license in the file "LICENSE" in the top level distribution directory See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/ *************************************************************************************/
/* END LEGAL */ /* END LEGAL */
#include <Grid.h> #include <Grid/Grid.h>
namespace Grid { namespace Grid {
namespace QCD { namespace QCD {

2
lib/qcd/action/fermion/PartialFractionFermion5D.cc
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@ -26,7 +26,7 @@ Author: Peter Boyle <paboyle@ph.ed.ac.uk>
See the full license in the file "LICENSE" in the top level distribution directory See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/ *************************************************************************************/
/* END LEGAL */ /* END LEGAL */
#include <Grid.h> #include <Grid/Grid.h>
namespace Grid { namespace Grid {
namespace QCD { namespace QCD {

2
lib/qcd/action/fermion/WilsonFermion.cc
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@ -29,7 +29,7 @@ See the full license in the file "LICENSE" in the top level distribution
directory directory
*************************************************************************************/ *************************************************************************************/
/* END LEGAL */ /* END LEGAL */
#include <Grid.h> #include <Grid/Grid.h>
namespace Grid { namespace Grid {
namespace QCD { namespace QCD {

4
lib/qcd/action/fermion/WilsonFermion5D.cc
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@ -29,8 +29,8 @@ Author: paboyle <paboyle@ph.ed.ac.uk>
See the full license in the file "LICENSE" in the top level distribution directory See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/ *************************************************************************************/
/* END LEGAL */ /* END LEGAL */
#include <Grid.h> #include <Grid/Grid.h>
#include <PerfCount.h> #include <Grid/PerfCount.h>
namespace Grid { namespace Grid {
namespace QCD { namespace QCD {

2
lib/qcd/action/fermion/WilsonKernels.cc
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@ -28,7 +28,7 @@ See the full license in the file "LICENSE" in the top level distribution
directory directory
*************************************************************************************/ *************************************************************************************/
/* END LEGAL */ /* END LEGAL */
#include <Grid.h> #include <Grid/Grid.h>
namespace Grid { namespace Grid {
namespace QCD { namespace QCD {

2
lib/qcd/action/fermion/WilsonKernelsAsm.cc
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@ -30,7 +30,7 @@ Author: Guido Cossu <guido.cossu@ed.ac.uk>
*************************************************************************************/ *************************************************************************************/
/* END LEGAL */ /* END LEGAL */
#include <Grid.h> #include <Grid/Grid.h>
namespace Grid { namespace Grid {

2
lib/qcd/action/fermion/WilsonKernelsHand.cc
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@ -26,7 +26,7 @@ Author: paboyle <paboyle@ph.ed.ac.uk>
See the full license in the file "LICENSE" in the top level distribution directory See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/ *************************************************************************************/
/* END LEGAL */ /* END LEGAL */
#include <Grid.h> #include <Grid/Grid.h>
#define REGISTER #define REGISTER

2
lib/qcd/action/fermion/WilsonTMFermion.cc
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@ -25,7 +25,7 @@ Author: paboyle <paboyle@ph.ed.ac.uk>
See the full license in the file "LICENSE" in the top level distribution directory See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/ *************************************************************************************/
/* END LEGAL */ /* END LEGAL */
#include <Grid.h> #include <Grid/Grid.h>
namespace Grid { namespace Grid {
namespace QCD { namespace QCD {

2
lib/qcd/hmc/HMC.cc
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@ -27,7 +27,7 @@ Author: paboyle <paboyle@ph.ed.ac.uk>
See the full license in the file "LICENSE" in the top level distribution directory See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/ *************************************************************************************/
/* END LEGAL */ /* END LEGAL */
#include <Grid.h> #include <Grid/Grid.h>
namespace Grid{ namespace Grid{
namespace QCD{ namespace QCD{

2
lib/qcd/spin/Dirac.cc
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@ -25,7 +25,7 @@ Author: Peter Boyle <paboyle@ph.ed.ac.uk>
See the full license in the file "LICENSE" in the top level distribution directory See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/ *************************************************************************************/
/* END LEGAL */ /* END LEGAL */
#include <Grid.h> #include <Grid/Grid.h>
namespace Grid { namespace Grid {

2
lib/qcd/utils/SpaceTimeGrid.cc
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@ -25,7 +25,7 @@ Author: Peter Boyle <paboyle@ph.ed.ac.uk>
See the full license in the file "LICENSE" in the top level distribution directory See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/ *************************************************************************************/
/* END LEGAL */ /* END LEGAL */
#include <Grid.h> #include <Grid/Grid.h>
namespace Grid { namespace Grid {
namespace QCD { namespace QCD {

2
lib/serialisation/BinaryIO.cc
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@ -26,7 +26,7 @@ Author: paboyle <paboyle@ph.ed.ac.uk>
See the full license in the file "LICENSE" in the top level distribution directory See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/ *************************************************************************************/
/* END LEGAL */ /* END LEGAL */
#include <Grid.h> #include <Grid/Grid.h>
using namespace Grid; using namespace Grid;
using namespace std; using namespace std;

2
lib/serialisation/Hdf5IO.cc
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@ -1,4 +1,4 @@
#include <Grid.h> #include <Grid/Grid.h>
using namespace Grid; using namespace Grid;
#ifndef H5_NO_NAMESPACE #ifndef H5_NO_NAMESPACE

2
lib/serialisation/TextIO.cc
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@ -26,7 +26,7 @@ Author: paboyle <paboyle@ph.ed.ac.uk>
See the full license in the file "LICENSE" in the top level distribution directory See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/ *************************************************************************************/
/* END LEGAL */ /* END LEGAL */
#include <Grid.h> #include <Grid/Grid.h>
using namespace Grid; using namespace Grid;
using namespace std; using namespace std;

2
lib/serialisation/XmlIO.cc
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@ -26,7 +26,7 @@ Author: paboyle <paboyle@ph.ed.ac.uk>
See the full license in the file "LICENSE" in the top level distribution directory See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/ *************************************************************************************/
/* END LEGAL */ /* END LEGAL */
#include <Grid.h> #include <Grid/Grid.h>
using namespace Grid; using namespace Grid;
using namespace std; using namespace std;

2
lib/stencil/Lebesgue.cc
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@ -26,7 +26,7 @@ Author: paboyle <paboyle@ph.ed.ac.uk>
See the full license in the file "LICENSE" in the top level distribution directory See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/ *************************************************************************************/
/* END LEGAL */ /* END LEGAL */
#include <Grid.h> #include <Grid/Grid.h>
#include <algorithm> #include <algorithm>
namespace Grid { namespace Grid {

2
lib/stencil/Stencil_common.cc
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@ -26,7 +26,7 @@ Author: Peter Boyle <peterboyle@Peters-MacBook-Pro-2.local>
See the full license in the file "LICENSE" in the top level distribution directory See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/ *************************************************************************************/
/* END LEGAL */ /* END LEGAL */
#include "Grid.h" #include <Grid/Grid.h>
namespace Grid { namespace Grid {
} }

2
tests/qdpxx/Test_qdpxx_loops_staples.cc
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@ -25,7 +25,7 @@ Author: Azusa Yamaguchi <ayamaguc@staffmail.ed.ac.uk>
See the full license in the file "LICENSE" in the top level distribution directory See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/ *************************************************************************************/
/* END LEGAL */ /* END LEGAL */
#include <Grid.h> #include <Grid/Grid.h>
double calc_grid_p (Grid::QCD::LatticeGaugeField & lat); double calc_grid_p (Grid::QCD::LatticeGaugeField & lat);
double calc_chroma_p (Grid::QCD::LatticeGaugeField & lat); double calc_chroma_p (Grid::QCD::LatticeGaugeField & lat);

2
tests/qdpxx/Test_qdpxx_munprec.cc
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@ -26,7 +26,7 @@ Author: paboyle <paboyle@ph.ed.ac.uk>
See the full license in the file "LICENSE" in the top level distribution directory See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/ *************************************************************************************/
/* END LEGAL */ /* END LEGAL */
#include <Grid.h> #include <Grid/Grid.h>
int Ls=8; int Ls=8;
double M5=1.6; double M5=1.6;