Merge branch 'master' into hadrons

.gitignore

@@ -94,8 +94,7 @@ Thumbs.db
 
 # build directory #
 ###################
-build/*
+build*/*
-build_debug/*
 
 # IDE related files #
 #####################

lib/PerfCount.h

@@ -65,8 +65,11 @@ inline uint64_t cyclecount(void){
    return tmp;
 }
 #elif defined __x86_64__
+#include <immintrin.h>
+#ifndef __INTEL_COMPILER
 #include <x86intrin.h>
-inline uint64_t cyclecount(void){ 
+#endif
+inline uint64_t cyclecount(void){
    return __rdtsc();
 }
 #else

lib/lattice/Lattice_rng.h

@@ -75,7 +75,7 @@ namespace Grid {
 
     std::seed_seq src;
     
-    fixedSeed(std::vector<int> &seeds) : src(seeds.begin(),seeds.end()) {};
+    fixedSeed(const std::vector<int> &seeds) : src(seeds.begin(),seeds.end()) {};
 
     result_type operator () (void){
 
@@ -119,9 +119,10 @@ namespace Grid {
     typedef uint32_t     RngStateType;
     static const int     RngStateCount = std::mt19937::state_size;
 #endif
-    std::vector<RngEngine>             _generators;
+    std::vector<RngEngine>                             _generators;
-    std::vector<std::uniform_real_distribution<RealD> > _uniform;
+    std::vector<std::uniform_real_distribution<RealD>> _uniform;
-    std::vector<std::normal_distribution<RealD> >       _gaussian;
+    std::vector<std::normal_distribution<RealD>>       _gaussian;
+    std::vector<std::discrete_distribution<RealD>>     _bernoulli;
 
     void GetState(std::vector<RngStateType> & saved,int gen) {
       saved.resize(RngStateCount);
@@ -161,6 +162,7 @@ namespace Grid {
       _generators.resize(1);
       _uniform.resize(1,std::uniform_real_distribution<RealD>{0,1});
       _gaussian.resize(1,std::normal_distribution<RealD>(0.0,1.0) );
+      _bernoulli.resize(1,std::discrete_distribution<RealD>{1,1});
       _seeded=0;
     }
 
@@ -242,7 +244,7 @@ namespace Grid {
       std::random_device rd;
       Seed(rd);
     }
-    void SeedFixedIntegers(std::vector<int> &seeds){
+    void SeedFixedIntegers(const std::vector<int> &seeds){
       fixedSeed src(seeds);
       Seed(src);
     }
@@ -266,6 +268,7 @@ namespace Grid {
       _generators.resize(_vol);
       _uniform.resize(_vol,std::uniform_real_distribution<RealD>{0,1});
       _gaussian.resize(_vol,std::normal_distribution<RealD>(0.0,1.0) );
+      _bernoulli.resize(_vol,std::discrete_distribution<RealD>{1,1});
       _seeded=0;
     }
 
@@ -354,7 +357,7 @@ PARALLEL_FOR_LOOP
       std::random_device rd;
       Seed(rd);
     }
-    void SeedFixedIntegers(std::vector<int> &seeds){
+    void SeedFixedIntegers(const std::vector<int> &seeds){
       fixedSeed src(seeds);
       Seed(src);
     }
@@ -368,14 +371,22 @@ PARALLEL_FOR_LOOP
   template <class vobj> inline void gaussian(GridParallelRNG &rng,Lattice<vobj> &l){
     rng.fill(l,rng._gaussian);
   }
-
+  
+  template <class vobj> inline void bernoulli(GridParallelRNG &rng,Lattice<vobj> &l){
+    rng.fill(l,rng._bernoulli);
+  }
 
   template <class sobj> inline void random(GridSerialRNG &rng,sobj &l){
     rng.fill(l,rng._uniform);
   }
+  
   template <class sobj> inline void gaussian(GridSerialRNG &rng,sobj &l){
     rng.fill(l,rng._gaussian);
   }
+  
+  template <class sobj> inline void bernoulli(GridSerialRNG &rng,sobj &l){
+    rng.fill(l,rng._bernoulli);
+  }
 
 }
 #endif

lib/qcd/QCD.h

@@ -383,7 +383,6 @@ namespace QCD {
     //////////////////////////////////////////////
     // Poke scalars
     //////////////////////////////////////////////
-
     template<class vobj> void pokeSpin(vobj &lhs,const decltype(peekIndex<SpinIndex>(lhs,0)) & rhs,int i)
     {
       pokeIndex<SpinIndex>(lhs,rhs,i);
@@ -407,7 +406,41 @@ namespace QCD {
       pokeIndex<LorentzIndex>(lhs,rhs,i);
     }
 
-
+    //////////////////////////////////////////////
+    // Fermion <-> propagator assignements
+    //////////////////////////////////////////////
+    template <class Prop, class Ferm>
+    void FermToProp(Prop &p, const Ferm &f, const int s, const int c)
+    {
+        for(int j = 0; j < Ns; ++j)
+        {
+            auto pjs = peekSpin(p, j, s);
+            auto fj  = peekSpin(f, j);
+            
+            for(int i = 0; i < Nc; ++i)
+            {
+                pokeColour(pjs, peekColour(fj, i), i, c);
+            }
+            pokeSpin(p, pjs, j, s);
+        }
+    }
+    
+    template <class Prop, class Ferm>
+    void PropToFerm(Ferm &f, const Prop &p, const int s, const int c)
+    {
+        for(int j = 0; j < Ns; ++j)
+        {
+            auto pjs = peekSpin(p, j, s);
+            auto fj  = peekSpin(f, j);
+            
+            for(int i = 0; i < Nc; ++i)
+            {
+                pokeColour(fj, peekColour(pjs, i, c), i);
+            }
+            pokeSpin(f, fj, j);
+        }
+    }
+    
     //////////////////////////////////////////////
     // transpose array and scalar
     //////////////////////////////////////////////

lib/serialisation/BaseIO.h

@@ -32,6 +32,22 @@ Author: Peter Boyle <paboyle@ph.ed.ac.uk>
 #include <type_traits>
 
 namespace Grid {
+  // helper function to read space-separated values
+  template <typename T>
+  std::vector<T> strToVec(const std::string s)
+  {
+    std::istringstream sstr(s);
+    T                  buf;
+    std::vector<T>     v;
+    
+    while(!sstr.eof())
+    {
+      sstr >> buf;
+      v.push_back(buf);
+    }
+    
+    return v;
+  }
   
   class Serializable {};
   

tests/Test_serialisation.cc

@@ -140,4 +140,18 @@ int main(int argc,char **argv)
     std::cout << "Loaded (txt) -----------------" << std::endl;
     std::cout << copy3 << std::endl << veccopy3 << std::endl;
   }
+  
+  std::vector<int> iv = strToVec<int>("1 2 2 4");
+  std::vector<std::string> sv = strToVec<std::string>("bli bla blu");
+  
+  for (auto &e: iv)
+  {
+    std::cout << e << " ";
+  }
+  std::cout << std::endl;
+  for (auto &e: sv)
+  {
+    std::cout << e << " ";
+  }
+  std::cout << std::endl;
 }