diff --git a/Makefile.in b/Makefile.in index c9257ab2..c9b848f3 100644 --- a/Makefile.in +++ b/Makefile.in @@ -205,12 +205,9 @@ AUTOCONF = @AUTOCONF@ AUTOHEADER = @AUTOHEADER@ AUTOMAKE = @AUTOMAKE@ AWK = @AWK@ -CC = @CC@ -CCDEPMODE = @CCDEPMODE@ -CFLAGS = @CFLAGS@ -CPP = @CPP@ CPPFLAGS = @CPPFLAGS@ CXX = @CXX@ +CXXCPP = @CXXCPP@ CXXDEPMODE = @CXXDEPMODE@ CXXFLAGS = @CXXFLAGS@ CYGPATH_W = @CYGPATH_W@ @@ -234,7 +231,7 @@ LTLIBOBJS = @LTLIBOBJS@ MAKEINFO = @MAKEINFO@ MKDIR_P = @MKDIR_P@ OBJEXT = @OBJEXT@ -OPENMP_CFLAGS = @OPENMP_CFLAGS@ +OPENMP_CXXFLAGS = @OPENMP_CXXFLAGS@ PACKAGE = @PACKAGE@ PACKAGE_BUGREPORT = @PACKAGE_BUGREPORT@ PACKAGE_NAME = @PACKAGE_NAME@ @@ -252,7 +249,6 @@ abs_builddir = @abs_builddir@ abs_srcdir = @abs_srcdir@ abs_top_builddir = @abs_top_builddir@ abs_top_srcdir = @abs_top_srcdir@ -ac_ct_CC = @ac_ct_CC@ ac_ct_CXX = @ac_ct_CXX@ am__include = @am__include@ am__leading_dot = @am__leading_dot@ diff --git a/TODO b/TODO index 6a1624f7..b596c605 100644 --- a/TODO +++ b/TODO @@ -2,10 +2,7 @@ *** Hacks and bug fixes to clean up and Audits ================================================================ * Base class to share common code between vRealF, VComplexF etc... - -* Performance check on Guido's reimplementation strategy - -* Bug in SeedFixedIntegers gives same output on each site. -- Think I fixed but NOT checked for sure + - Performance check on Guido's reimplementation strategy * FIXME audit * const audit @@ -20,15 +17,16 @@ *** New Functionality ================================================================ -* Implement where to take template scheme. +* Implement where within expression template scheme. * - BinaryWriter, TextWriter etc... - use protocol buffers? replace xmlReader/Writer ec.. - Binary use htonll, htonl -* Expression template engine: +* Bug in SeedFixedIntegers gave same output on each site. -- Think I fixed but NOT checked for sure + Implement and use lattice IO to verify this. - -- Audit +* Expression template engine: -- DONE -- Norm2(expression) problem: introduce norm2 unary op, or Introduce conversion automatic from expression to Lattice * CovariantShift support -----Use a class to store gauge field? (parallel transport?) @@ -56,9 +54,10 @@ * TaProj * FFTnD ? -* Parallel MPI2 IO - Plaquette checks into nersc reader. - +* Parallel io improvements + - optional parallel MPI2 IO + - move Plaquette and link trace checks into nersc reader from the Grid_nersc_io.cc test. + * rb4d support for 5th dimension in Mobius. * Check for missing functionality - partially audited against QDP++ layout @@ -70,13 +69,15 @@ // copyMask. // localMaxAbs // Fourier transform equivalent. -Actions + +Actions -- coherent framework for implementing actions and their forces. * Fermion - Wilson - Clover - DomainWall - Mobius - z-Mobius + * Gauge - Wilson, symanzik, iwasaki diff --git a/aclocal.m4 b/aclocal.m4 index f3018f6c..bf79d078 100644 --- a/aclocal.m4 +++ b/aclocal.m4 @@ -765,70 +765,6 @@ AC_DEFUN([_AM_SET_OPTIONS], AC_DEFUN([_AM_IF_OPTION], [m4_ifset(_AM_MANGLE_OPTION([$1]), [$2], [$3])]) -# Copyright (C) 1999-2014 Free Software Foundation, Inc. -# -# This file is free software; the Free Software Foundation -# gives unlimited permission to copy and/or distribute it, -# with or without modifications, as long as this notice is preserved. - -# _AM_PROG_CC_C_O -# --------------- -# Like AC_PROG_CC_C_O, but changed for automake. We rewrite AC_PROG_CC -# to automatically call this. -AC_DEFUN([_AM_PROG_CC_C_O], -[AC_REQUIRE([AM_AUX_DIR_EXPAND])dnl -AC_REQUIRE_AUX_FILE([compile])dnl -AC_LANG_PUSH([C])dnl -AC_CACHE_CHECK( - [whether $CC understands -c and -o together], - [am_cv_prog_cc_c_o], - [AC_LANG_CONFTEST([AC_LANG_PROGRAM([])]) - # Make sure it works both with $CC and with simple cc. - # Following AC_PROG_CC_C_O, we do the test twice because some - # compilers refuse to overwrite an existing .o file with -o, - # though they will create one. - am_cv_prog_cc_c_o=yes - for am_i in 1 2; do - if AM_RUN_LOG([$CC -c conftest.$ac_ext -o conftest2.$ac_objext]) \ - && test -f conftest2.$ac_objext; then - : OK - else - am_cv_prog_cc_c_o=no - break - fi - done - rm -f core conftest* - unset am_i]) -if test "$am_cv_prog_cc_c_o" != yes; then - # Losing compiler, so override with the script. - # FIXME: It is wrong to rewrite CC. - # But if we don't then we get into trouble of one sort or another. - # A longer-term fix would be to have automake use am__CC in this case, - # and then we could set am__CC="\$(top_srcdir)/compile \$(CC)" - CC="$am_aux_dir/compile $CC" -fi -AC_LANG_POP([C])]) - -# For backward compatibility. -AC_DEFUN_ONCE([AM_PROG_CC_C_O], [AC_REQUIRE([AC_PROG_CC])]) - -# Copyright (C) 2001-2014 Free Software Foundation, Inc. -# -# This file is free software; the Free Software Foundation -# gives unlimited permission to copy and/or distribute it, -# with or without modifications, as long as this notice is preserved. - -# AM_RUN_LOG(COMMAND) -# ------------------- -# Run COMMAND, save the exit status in ac_status, and log it. -# (This has been adapted from Autoconf's _AC_RUN_LOG macro.) -AC_DEFUN([AM_RUN_LOG], -[{ echo "$as_me:$LINENO: $1" >&AS_MESSAGE_LOG_FD - ($1) >&AS_MESSAGE_LOG_FD 2>&AS_MESSAGE_LOG_FD - ac_status=$? - echo "$as_me:$LINENO: \$? = $ac_status" >&AS_MESSAGE_LOG_FD - (exit $ac_status); }]) - # Check to make sure that the build environment is sane. -*- Autoconf -*- # Copyright (C) 1996-2014 Free Software Foundation, Inc. diff --git a/benchmarks/Grid_wilson.cc b/benchmarks/Grid_wilson.cc index de31413f..9ce13090 100644 --- a/benchmarks/Grid_wilson.cc +++ b/benchmarks/Grid_wilson.cc @@ -77,7 +77,7 @@ int main (int argc, char ** argv) WilsonMatrix Dw(Umu,mass); std::cout << "Calling Dw"< CPPFLAGS (Objective) C/C++ preprocessor flags, e.g. -I if you have headers in a nonstandard directory - CC C compiler command - CFLAGS C compiler flags - CPP C preprocessor + CXXCPP C++ preprocessor Use these variables to override the choices made by `configure' or to help it to find libraries and programs with nonstandard names/locations. @@ -1500,48 +1490,10 @@ fi } # ac_fn_cxx_try_compile -# ac_fn_c_try_compile LINENO -# -------------------------- -# Try to compile conftest.$ac_ext, and return whether this succeeded. -ac_fn_c_try_compile () -{ - as_lineno=${as_lineno-"$1"} as_lineno_stack=as_lineno_stack=$as_lineno_stack - rm -f conftest.$ac_objext - if { { ac_try="$ac_compile" -case "(($ac_try" in - *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; - *) ac_try_echo=$ac_try;; -esac -eval ac_try_echo="\"\$as_me:${as_lineno-$LINENO}: $ac_try_echo\"" -$as_echo "$ac_try_echo"; } >&5 - (eval "$ac_compile") 2>conftest.err - ac_status=$? - if test -s conftest.err; then - grep -v '^ *+' conftest.err >conftest.er1 - cat conftest.er1 >&5 - mv -f conftest.er1 conftest.err - fi - $as_echo "$as_me:${as_lineno-$LINENO}: \$? = $ac_status" >&5 - test $ac_status = 0; } && { - test -z "$ac_c_werror_flag" || - test ! -s conftest.err - } && test -s conftest.$ac_objext; then : - ac_retval=0 -else - $as_echo "$as_me: failed program was:" >&5 -sed 's/^/| /' conftest.$ac_ext >&5 - - ac_retval=1 -fi - eval $as_lineno_stack; ${as_lineno_stack:+:} unset as_lineno - as_fn_set_status $ac_retval - -} # ac_fn_c_try_compile - -# ac_fn_c_try_link LINENO -# ----------------------- +# ac_fn_cxx_try_link LINENO +# ------------------------- # Try to link conftest.$ac_ext, and return whether this succeeded. -ac_fn_c_try_link () +ac_fn_cxx_try_link () { as_lineno=${as_lineno-"$1"} as_lineno_stack=as_lineno_stack=$as_lineno_stack rm -f conftest.$ac_objext conftest$ac_exeext @@ -1561,7 +1513,7 @@ $as_echo "$ac_try_echo"; } >&5 fi $as_echo "$as_me:${as_lineno-$LINENO}: \$? = $ac_status" >&5 test $ac_status = 0; } && { - test -z "$ac_c_werror_flag" || + test -z "$ac_cxx_werror_flag" || test ! -s conftest.err } && test -s conftest$ac_exeext && { test "$cross_compiling" = yes || @@ -1582,12 +1534,12 @@ fi eval $as_lineno_stack; ${as_lineno_stack:+:} unset as_lineno as_fn_set_status $ac_retval -} # ac_fn_c_try_link +} # ac_fn_cxx_try_link -# ac_fn_c_try_cpp LINENO -# ---------------------- +# ac_fn_cxx_try_cpp LINENO +# ------------------------ # Try to preprocess conftest.$ac_ext, and return whether this succeeded. -ac_fn_c_try_cpp () +ac_fn_cxx_try_cpp () { as_lineno=${as_lineno-"$1"} as_lineno_stack=as_lineno_stack=$as_lineno_stack if { { ac_try="$ac_cpp conftest.$ac_ext" @@ -1606,7 +1558,7 @@ $as_echo "$ac_try_echo"; } >&5 fi $as_echo "$as_me:${as_lineno-$LINENO}: \$? = $ac_status" >&5 test $ac_status = 0; } > conftest.i && { - test -z "$ac_c_preproc_warn_flag$ac_c_werror_flag" || + test -z "$ac_cxx_preproc_warn_flag$ac_cxx_werror_flag" || test ! -s conftest.err }; then : ac_retval=0 @@ -1619,14 +1571,14 @@ fi eval $as_lineno_stack; ${as_lineno_stack:+:} unset as_lineno as_fn_set_status $ac_retval -} # ac_fn_c_try_cpp +} # ac_fn_cxx_try_cpp -# ac_fn_c_check_header_mongrel LINENO HEADER VAR INCLUDES -# ------------------------------------------------------- +# ac_fn_cxx_check_header_mongrel LINENO HEADER VAR INCLUDES +# --------------------------------------------------------- # Tests whether HEADER exists, giving a warning if it cannot be compiled using # the include files in INCLUDES and setting the cache variable VAR # accordingly. -ac_fn_c_check_header_mongrel () +ac_fn_cxx_check_header_mongrel () { as_lineno=${as_lineno-"$1"} as_lineno_stack=as_lineno_stack=$as_lineno_stack if eval \${$3+:} false; then : @@ -1647,7 +1599,7 @@ cat confdefs.h - <<_ACEOF >conftest.$ac_ext $4 #include <$2> _ACEOF -if ac_fn_c_try_compile "$LINENO"; then : +if ac_fn_cxx_try_compile "$LINENO"; then : ac_header_compiler=yes else ac_header_compiler=no @@ -1663,7 +1615,7 @@ cat confdefs.h - <<_ACEOF >conftest.$ac_ext /* end confdefs.h. */ #include <$2> _ACEOF -if ac_fn_c_try_cpp "$LINENO"; then : +if ac_fn_cxx_try_cpp "$LINENO"; then : ac_header_preproc=yes else ac_header_preproc=no @@ -1673,7 +1625,7 @@ rm -f conftest.err conftest.i conftest.$ac_ext $as_echo "$ac_header_preproc" >&6; } # So? What about this header? -case $ac_header_compiler:$ac_header_preproc:$ac_c_preproc_warn_flag in #(( +case $ac_header_compiler:$ac_header_preproc:$ac_cxx_preproc_warn_flag in #(( yes:no: ) { $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: $2: accepted by the compiler, rejected by the preprocessor!" >&5 $as_echo "$as_me: WARNING: $2: accepted by the compiler, rejected by the preprocessor!" >&2;} @@ -1710,13 +1662,13 @@ $as_echo "$ac_res" >&6; } fi eval $as_lineno_stack; ${as_lineno_stack:+:} unset as_lineno -} # ac_fn_c_check_header_mongrel +} # ac_fn_cxx_check_header_mongrel -# ac_fn_c_try_run LINENO -# ---------------------- +# ac_fn_cxx_try_run LINENO +# ------------------------ # Try to link conftest.$ac_ext, and return whether this succeeded. Assumes # that executables *can* be run. -ac_fn_c_try_run () +ac_fn_cxx_try_run () { as_lineno=${as_lineno-"$1"} as_lineno_stack=as_lineno_stack=$as_lineno_stack if { { ac_try="$ac_link" @@ -1752,13 +1704,13 @@ fi eval $as_lineno_stack; ${as_lineno_stack:+:} unset as_lineno as_fn_set_status $ac_retval -} # ac_fn_c_try_run +} # ac_fn_cxx_try_run -# ac_fn_c_check_header_compile LINENO HEADER VAR INCLUDES -# ------------------------------------------------------- +# ac_fn_cxx_check_header_compile LINENO HEADER VAR INCLUDES +# --------------------------------------------------------- # Tests whether HEADER exists and can be compiled using the include files in # INCLUDES, setting the cache variable VAR accordingly. -ac_fn_c_check_header_compile () +ac_fn_cxx_check_header_compile () { as_lineno=${as_lineno-"$1"} as_lineno_stack=as_lineno_stack=$as_lineno_stack { $as_echo "$as_me:${as_lineno-$LINENO}: checking for $2" >&5 @@ -1771,7 +1723,7 @@ else $4 #include <$2> _ACEOF -if ac_fn_c_try_compile "$LINENO"; then : +if ac_fn_cxx_try_compile "$LINENO"; then : eval "$3=yes" else eval "$3=no" @@ -1783,13 +1735,13 @@ eval ac_res=\$$3 $as_echo "$ac_res" >&6; } eval $as_lineno_stack; ${as_lineno_stack:+:} unset as_lineno -} # ac_fn_c_check_header_compile +} # ac_fn_cxx_check_header_compile -# ac_fn_c_check_decl LINENO SYMBOL VAR INCLUDES -# --------------------------------------------- +# ac_fn_cxx_check_decl LINENO SYMBOL VAR INCLUDES +# ----------------------------------------------- # Tests whether SYMBOL is declared in INCLUDES, setting cache variable VAR # accordingly. -ac_fn_c_check_decl () +ac_fn_cxx_check_decl () { as_lineno=${as_lineno-"$1"} as_lineno_stack=as_lineno_stack=$as_lineno_stack as_decl_name=`echo $2|sed 's/ *(.*//'` @@ -1817,7 +1769,7 @@ main () return 0; } _ACEOF -if ac_fn_c_try_compile "$LINENO"; then : +if ac_fn_cxx_try_compile "$LINENO"; then : eval "$3=yes" else eval "$3=no" @@ -1829,13 +1781,13 @@ eval ac_res=\$$3 $as_echo "$ac_res" >&6; } eval $as_lineno_stack; ${as_lineno_stack:+:} unset as_lineno -} # ac_fn_c_check_decl +} # ac_fn_cxx_check_decl -# ac_fn_c_check_type LINENO TYPE VAR INCLUDES -# ------------------------------------------- +# ac_fn_cxx_check_type LINENO TYPE VAR INCLUDES +# --------------------------------------------- # Tests whether TYPE exists after having included INCLUDES, setting cache # variable VAR accordingly. -ac_fn_c_check_type () +ac_fn_cxx_check_type () { as_lineno=${as_lineno-"$1"} as_lineno_stack=as_lineno_stack=$as_lineno_stack { $as_echo "$as_me:${as_lineno-$LINENO}: checking for $2" >&5 @@ -1856,7 +1808,7 @@ if (sizeof ($2)) return 0; } _ACEOF -if ac_fn_c_try_compile "$LINENO"; then : +if ac_fn_cxx_try_compile "$LINENO"; then : cat confdefs.h - <<_ACEOF >conftest.$ac_ext /* end confdefs.h. */ $4 @@ -1869,7 +1821,7 @@ if (sizeof (($2))) return 0; } _ACEOF -if ac_fn_c_try_compile "$LINENO"; then : +if ac_fn_cxx_try_compile "$LINENO"; then : else eval "$3=yes" @@ -1883,7 +1835,7 @@ eval ac_res=\$$3 $as_echo "$ac_res" >&6; } eval $as_lineno_stack; ${as_lineno_stack:+:} unset as_lineno -} # ac_fn_c_check_type +} # ac_fn_cxx_check_type # ac_fn_c_find_uintX_t LINENO BITS VAR # ------------------------------------ @@ -1916,7 +1868,7 @@ return test_array [0]; return 0; } _ACEOF -if ac_fn_c_try_compile "$LINENO"; then : +if ac_fn_cxx_try_compile "$LINENO"; then : case $ac_type in #( uint$2_t) : eval "$3=yes" ;; #( @@ -1939,10 +1891,10 @@ $as_echo "$ac_res" >&6; } } # ac_fn_c_find_uintX_t -# ac_fn_c_check_func LINENO FUNC VAR -# ---------------------------------- +# ac_fn_cxx_check_func LINENO FUNC VAR +# ------------------------------------ # Tests whether FUNC exists, setting the cache variable VAR accordingly -ac_fn_c_check_func () +ac_fn_cxx_check_func () { as_lineno=${as_lineno-"$1"} as_lineno_stack=as_lineno_stack=$as_lineno_stack { $as_echo "$as_me:${as_lineno-$LINENO}: checking for $2" >&5 @@ -1991,7 +1943,7 @@ return $2 (); return 0; } _ACEOF -if ac_fn_c_try_link "$LINENO"; then : +if ac_fn_cxx_try_link "$LINENO"; then : eval "$3=yes" else eval "$3=no" @@ -2004,7 +1956,7 @@ eval ac_res=\$$3 $as_echo "$ac_res" >&6; } eval $as_lineno_stack; ${as_lineno_stack:+:} unset as_lineno -} # ac_fn_c_check_func +} # ac_fn_cxx_check_func cat >config.log <<_ACEOF This file contains any messages produced by compilers while running configure, to aid debugging if configure makes a mistake. @@ -2971,6 +2923,12 @@ ac_config_headers="$ac_config_headers lib/Grid_config.h" # Checks for programs. +ac_ext=cpp +ac_cpp='$CXXCPP $CPPFLAGS' +ac_compile='$CXX -c $CXXFLAGS $CPPFLAGS conftest.$ac_ext >&5' +ac_link='$CXX -o conftest$ac_exeext $CXXFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5' +ac_compiler_gnu=$ac_cv_cxx_compiler_gnu + ac_ext=cpp ac_cpp='$CXXCPP $CPPFLAGS' ac_compile='$CXX -c $CXXFLAGS $CPPFLAGS conftest.$ac_ext >&5' @@ -3472,11 +3430,11 @@ else CXXFLAGS= fi fi -ac_ext=c -ac_cpp='$CPP $CPPFLAGS' -ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5' -ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5' -ac_compiler_gnu=$ac_cv_c_compiler_gnu +ac_ext=cpp +ac_cpp='$CXXCPP $CPPFLAGS' +ac_compile='$CXX -c $CXXFLAGS $CPPFLAGS conftest.$ac_ext >&5' +ac_link='$CXX -o conftest$ac_exeext $CXXFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5' +ac_compiler_gnu=$ac_cv_cxx_compiler_gnu DEPDIR="${am__leading_dot}deps" ac_config_commands="$ac_config_commands depfiles" @@ -3669,744 +3627,18 @@ else fi -ac_ext=c -ac_cpp='$CPP $CPPFLAGS' -ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5' -ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5' -ac_compiler_gnu=$ac_cv_c_compiler_gnu -if test -n "$ac_tool_prefix"; 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So we grep stderr for any message - # that says an option was ignored or not supported. - # When given -MP, icc 7.0 and 7.1 complain thusly: - # icc: Command line warning: ignoring option '-M'; no argument required - # The diagnosis changed in icc 8.0: - # icc: Command line remark: option '-MP' not supported - if (grep 'ignoring option' conftest.err || - grep 'not supported' conftest.err) >/dev/null 2>&1; then :; else - am_cv_CC_dependencies_compiler_type=$depmode - break - fi - fi - done - - cd .. - rm -rf conftest.dir -else - am_cv_CC_dependencies_compiler_type=none -fi - -fi -{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $am_cv_CC_dependencies_compiler_type" >&5 -$as_echo "$am_cv_CC_dependencies_compiler_type" >&6; } -CCDEPMODE=depmode=$am_cv_CC_dependencies_compiler_type - - if - test "x$enable_dependency_tracking" != xno \ - && test "$am_cv_CC_dependencies_compiler_type" = gcc3; then - am__fastdepCC_TRUE= - am__fastdepCC_FALSE='#' -else - am__fastdepCC_TRUE='#' - am__fastdepCC_FALSE= -fi - - - - - OPENMP_CFLAGS= + OPENMP_CXXFLAGS= # Check whether --enable-openmp was given. if test "${enable_openmp+set}" = set; then : enableval=$enable_openmp; fi if test "$enable_openmp" != no; then - { $as_echo "$as_me:${as_lineno-$LINENO}: checking for $CC option to support OpenMP" >&5 -$as_echo_n "checking for $CC option to support OpenMP... " >&6; } -if ${ac_cv_prog_c_openmp+:} false; then : + { $as_echo "$as_me:${as_lineno-$LINENO}: checking for $CXX option to support OpenMP" >&5 +$as_echo_n "checking for $CXX option to support OpenMP... " >&6; } +if ${ac_cv_prog_cxx_openmp+:} false; then : $as_echo_n "(cached) " >&6 else cat confdefs.h - <<_ACEOF >conftest.$ac_ext @@ -4419,14 +3651,14 @@ else int main () { return omp_get_num_threads (); } _ACEOF -if ac_fn_c_try_link "$LINENO"; then : - ac_cv_prog_c_openmp='none needed' +if ac_fn_cxx_try_link "$LINENO"; then : + ac_cv_prog_cxx_openmp='none needed' else - ac_cv_prog_c_openmp='unsupported' + ac_cv_prog_cxx_openmp='unsupported' for ac_option in -fopenmp -xopenmp -openmp -mp -omp -qsmp=omp -homp \ -Popenmp --openmp; do - ac_save_CFLAGS=$CFLAGS - CFLAGS="$CFLAGS $ac_option" + ac_save_CXXFLAGS=$CXXFLAGS + CXXFLAGS="$CXXFLAGS $ac_option" cat confdefs.h - <<_ACEOF >conftest.$ac_ext /* end confdefs.h. */ @@ -4437,13 +3669,13 @@ else int main () { return omp_get_num_threads (); } _ACEOF -if ac_fn_c_try_link "$LINENO"; then : - ac_cv_prog_c_openmp=$ac_option +if ac_fn_cxx_try_link "$LINENO"; then : + ac_cv_prog_cxx_openmp=$ac_option fi rm -f core conftest.err conftest.$ac_objext \ conftest$ac_exeext conftest.$ac_ext - CFLAGS=$ac_save_CFLAGS - if test "$ac_cv_prog_c_openmp" != unsupported; then + CXXFLAGS=$ac_save_CXXFLAGS + if test "$ac_cv_prog_cxx_openmp" != unsupported; then break fi done @@ -4451,13 +3683,13 @@ fi rm -f core conftest.err conftest.$ac_objext \ conftest$ac_exeext conftest.$ac_ext fi -{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_prog_c_openmp" >&5 -$as_echo "$ac_cv_prog_c_openmp" >&6; } - case $ac_cv_prog_c_openmp in #( +{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_prog_cxx_openmp" >&5 +$as_echo "$ac_cv_prog_cxx_openmp" >&6; } + case $ac_cv_prog_cxx_openmp in #( "none needed" | unsupported) ;; #( *) - OPENMP_CFLAGS=$ac_cv_prog_c_openmp ;; + OPENMP_CXXFLAGS=$ac_cv_prog_cxx_openmp ;; esac fi @@ -4559,26 +3791,22 @@ fi #AX_GCC_VAR_ATTRIBUTE(aligned) # Checks for header files. -ac_ext=c -ac_cpp='$CPP $CPPFLAGS' -ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5' -ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5' -ac_compiler_gnu=$ac_cv_c_compiler_gnu -{ $as_echo "$as_me:${as_lineno-$LINENO}: checking how to run the C preprocessor" >&5 -$as_echo_n "checking how to run the C preprocessor... " >&6; } -# On Suns, sometimes $CPP names a directory. -if test -n "$CPP" && test -d "$CPP"; then - CPP= -fi -if test -z "$CPP"; then - if ${ac_cv_prog_CPP+:} false; then : +ac_ext=cpp +ac_cpp='$CXXCPP $CPPFLAGS' +ac_compile='$CXX -c $CXXFLAGS $CPPFLAGS conftest.$ac_ext >&5' +ac_link='$CXX -o conftest$ac_exeext $CXXFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5' +ac_compiler_gnu=$ac_cv_cxx_compiler_gnu +{ $as_echo "$as_me:${as_lineno-$LINENO}: checking how to run the C++ preprocessor" >&5 +$as_echo_n "checking how to run the C++ preprocessor... " >&6; } +if test -z "$CXXCPP"; then + if ${ac_cv_prog_CXXCPP+:} false; then : $as_echo_n "(cached) " >&6 else - # Double quotes because CPP needs to be expanded - for CPP in "$CC -E" "$CC -E -traditional-cpp" "/lib/cpp" + # Double quotes because CXXCPP needs to be expanded + for CXXCPP in "$CXX -E" "/lib/cpp" do ac_preproc_ok=false -for ac_c_preproc_warn_flag in '' yes +for ac_cxx_preproc_warn_flag in '' yes do # Use a header file that comes with gcc, so configuring glibc # with a fresh cross-compiler works. @@ -4595,7 +3823,7 @@ do #endif Syntax error _ACEOF -if ac_fn_c_try_cpp "$LINENO"; then : +if ac_fn_cxx_try_cpp "$LINENO"; then : else # Broken: fails on valid input. @@ -4609,7 +3837,7 @@ rm -f conftest.err conftest.i conftest.$ac_ext /* end confdefs.h. */ #include _ACEOF -if ac_fn_c_try_cpp "$LINENO"; then : +if ac_fn_cxx_try_cpp "$LINENO"; then : # Broken: success on invalid input. continue else @@ -4627,17 +3855,17 @@ if $ac_preproc_ok; then : fi done - ac_cv_prog_CPP=$CPP + ac_cv_prog_CXXCPP=$CXXCPP fi - CPP=$ac_cv_prog_CPP + CXXCPP=$ac_cv_prog_CXXCPP else - ac_cv_prog_CPP=$CPP + ac_cv_prog_CXXCPP=$CXXCPP fi -{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $CPP" >&5 -$as_echo "$CPP" >&6; } +{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $CXXCPP" >&5 +$as_echo "$CXXCPP" >&6; } ac_preproc_ok=false -for ac_c_preproc_warn_flag in '' yes +for ac_cxx_preproc_warn_flag in '' yes do # Use a header file that comes with gcc, so configuring glibc # with a fresh cross-compiler works. @@ -4654,7 +3882,7 @@ do #endif Syntax error _ACEOF -if ac_fn_c_try_cpp "$LINENO"; then : +if ac_fn_cxx_try_cpp "$LINENO"; then : else # Broken: fails on valid input. @@ -4668,7 +3896,7 @@ rm -f conftest.err conftest.i conftest.$ac_ext /* end confdefs.h. */ #include _ACEOF -if ac_fn_c_try_cpp "$LINENO"; then : +if ac_fn_cxx_try_cpp "$LINENO"; then : # Broken: success on invalid input. continue else @@ -4686,15 +3914,15 @@ if $ac_preproc_ok; then : else { { $as_echo "$as_me:${as_lineno-$LINENO}: error: in \`$ac_pwd':" >&5 $as_echo "$as_me: error: in \`$ac_pwd':" >&2;} -as_fn_error $? "C preprocessor \"$CPP\" fails sanity check +as_fn_error $? "C++ preprocessor \"$CXXCPP\" fails sanity check See \`config.log' for more details" "$LINENO" 5; } fi -ac_ext=c -ac_cpp='$CPP $CPPFLAGS' -ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5' -ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5' -ac_compiler_gnu=$ac_cv_c_compiler_gnu +ac_ext=cpp +ac_cpp='$CXXCPP $CPPFLAGS' +ac_compile='$CXX -c $CXXFLAGS $CPPFLAGS conftest.$ac_ext >&5' +ac_link='$CXX -o conftest$ac_exeext $CXXFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5' +ac_compiler_gnu=$ac_cv_cxx_compiler_gnu { $as_echo "$as_me:${as_lineno-$LINENO}: checking for grep that handles long lines and -e" >&5 @@ -4847,7 +4075,7 @@ main () return 0; } _ACEOF -if ac_fn_c_try_compile "$LINENO"; then : +if ac_fn_cxx_try_compile "$LINENO"; then : ac_cv_header_stdc=yes else ac_cv_header_stdc=no @@ -4920,7 +4148,7 @@ main () return 0; } _ACEOF -if ac_fn_c_try_run "$LINENO"; then : +if ac_fn_cxx_try_run "$LINENO"; then : else ac_cv_header_stdc=no @@ -4944,7 +4172,7 @@ for ac_header in sys/types.h sys/stat.h stdlib.h string.h memory.h strings.h \ inttypes.h stdint.h unistd.h do : as_ac_Header=`$as_echo "ac_cv_header_$ac_header" | $as_tr_sh` -ac_fn_c_check_header_compile "$LINENO" "$ac_header" "$as_ac_Header" "$ac_includes_default +ac_fn_cxx_check_header_compile "$LINENO" "$ac_header" "$as_ac_Header" "$ac_includes_default " if eval test \"x\$"$as_ac_Header"\" = x"yes"; then : cat >>confdefs.h <<_ACEOF @@ -4958,7 +4186,7 @@ done for ac_header in stdint.h do : - ac_fn_c_check_header_mongrel "$LINENO" "stdint.h" "ac_cv_header_stdint_h" "$ac_includes_default" + ac_fn_cxx_check_header_mongrel "$LINENO" "stdint.h" "ac_cv_header_stdint_h" "$ac_includes_default" if test "x$ac_cv_header_stdint_h" = xyes; then : cat >>confdefs.h <<_ACEOF #define HAVE_STDINT_H 1 @@ -4970,7 +4198,7 @@ done for ac_header in malloc/malloc.h do : - ac_fn_c_check_header_mongrel "$LINENO" "malloc/malloc.h" "ac_cv_header_malloc_malloc_h" "$ac_includes_default" + ac_fn_cxx_check_header_mongrel "$LINENO" "malloc/malloc.h" "ac_cv_header_malloc_malloc_h" "$ac_includes_default" if test "x$ac_cv_header_malloc_malloc_h" = xyes; then : cat >>confdefs.h <<_ACEOF #define HAVE_MALLOC_MALLOC_H 1 @@ -4982,7 +4210,7 @@ done for ac_header in malloc.h do : - ac_fn_c_check_header_mongrel "$LINENO" "malloc.h" "ac_cv_header_malloc_h" "$ac_includes_default" + ac_fn_cxx_check_header_mongrel "$LINENO" "malloc.h" "ac_cv_header_malloc_h" "$ac_includes_default" if test "x$ac_cv_header_malloc_h" = xyes; then : cat >>confdefs.h <<_ACEOF #define HAVE_MALLOC_H 1 @@ -4994,7 +4222,7 @@ done for ac_header in endian.h do : - ac_fn_c_check_header_mongrel "$LINENO" "endian.h" "ac_cv_header_endian_h" "$ac_includes_default" + ac_fn_cxx_check_header_mongrel "$LINENO" "endian.h" "ac_cv_header_endian_h" "$ac_includes_default" if test "x$ac_cv_header_endian_h" = xyes; then : cat >>confdefs.h <<_ACEOF #define HAVE_ENDIAN_H 1 @@ -5005,7 +4233,7 @@ fi done #AC_CHECK_HEADERS(machine/endian.h) -ac_fn_c_check_decl "$LINENO" "ntohll" "ac_cv_have_decl_ntohll" "#include +ac_fn_cxx_check_decl "$LINENO" "ntohll" "ac_cv_have_decl_ntohll" "#include " if test "x$ac_cv_have_decl_ntohll" = xyes; then : ac_have_decl=1 @@ -5017,7 +4245,7 @@ cat >>confdefs.h <<_ACEOF #define HAVE_DECL_NTOHLL $ac_have_decl _ACEOF -ac_fn_c_check_decl "$LINENO" "be64toh" "ac_cv_have_decl_be64toh" "#include +ac_fn_cxx_check_decl "$LINENO" "be64toh" "ac_cv_have_decl_be64toh" "#include " if test "x$ac_cv_have_decl_be64toh" = xyes; then : ac_have_decl=1 @@ -5031,7 +4259,7 @@ _ACEOF # Checks for typedefs, structures, and compiler characteristics. -ac_fn_c_check_type "$LINENO" "size_t" "ac_cv_type_size_t" "$ac_includes_default" +ac_fn_cxx_check_type "$LINENO" "size_t" "ac_cv_type_size_t" "$ac_includes_default" if test "x$ac_cv_type_size_t" = xyes; then : else @@ -5074,7 +4302,7 @@ _ACEOF # Checks for library functions. for ac_func in gettimeofday do : - ac_fn_c_check_func "$LINENO" "gettimeofday" "ac_cv_func_gettimeofday" + ac_fn_cxx_check_func "$LINENO" "gettimeofday" "ac_cv_func_gettimeofday" if test "x$ac_cv_func_gettimeofday" = xyes; then : cat >>confdefs.h <<_ACEOF #define HAVE_GETTIMEOFDAY 1 @@ -5309,10 +4537,6 @@ if test -z "${am__fastdepCXX_TRUE}" && test -z "${am__fastdepCXX_FALSE}"; then as_fn_error $? "conditional \"am__fastdepCXX\" was never defined. Usually this means the macro was only invoked conditionally." "$LINENO" 5 fi -if test -z "${am__fastdepCC_TRUE}" && test -z "${am__fastdepCC_FALSE}"; then - as_fn_error $? "conditional \"am__fastdepCC\" was never defined. -Usually this means the macro was only invoked conditionally." "$LINENO" 5 -fi if test -z "${BUILD_COMMS_MPI_TRUE}" && test -z "${BUILD_COMMS_MPI_FALSE}"; then as_fn_error $? "conditional \"BUILD_COMMS_MPI\" was never defined. Usually this means the macro was only invoked conditionally." "$LINENO" 5 diff --git a/configure-commands b/configure-commands index d22e9fdd..8ba2dac1 100644 --- a/configure-commands +++ b/configure-commands @@ -1,3 +1,4 @@ +CXX=clang-omp++ ./configure --enable-simd=AVX CXXFLAGS="-mavx -fopenmp -O3 -I/opt/local/include/openmpi-mp/ -std=c++11" LDFLAGS=-L/opt/local/lib/openmpi-mp/ LIBS="-lmpi -lmpi_cxx -fopenmp" --enable-comms=mpi CXX=clang++ ./configure --enable-simd=AVX CXXFLAGS="-mavx -O3 -I/opt/local/include/openmpi-mp/ -std=c++11" LDFLAGS=-L/opt/local/lib/openmpi-mp/ LIBS="-lmpi -lmpi_cxx" --enable-comms=mpi CXX=clang++ ./configure --enable-simd=AVX CXXFLAGS="-mavx -g -I/opt/local/include/openmpi-mp/ -std=c++11" LDFLAGS=-L/opt/local/lib/openmpi-mp/ LIBS="-lmpi -lmpi_cxx" --enable-comms=mpi CXX=clang++ ./configure --enable-simd=AVX CXXFLAGS="-mavx -g -std=c++11" LDFLAGS= LIBS=-lmpi --enable-comms=fake diff --git a/configure.ac b/configure.ac index ce73ffd9..86f4b70c 100644 --- a/configure.ac +++ b/configure.ac @@ -6,6 +6,7 @@ AC_CONFIG_SRCDIR([lib/Grid.h]) AC_CONFIG_HEADERS([lib/Grid_config.h]) # Checks for programs. +AC_LANG(C++) AC_PROG_CXX AC_OPENMP AC_PROG_RANLIB diff --git a/lib/Grid.h b/lib/Grid.h index bd7b371a..f46f7bf5 100644 --- a/lib/Grid.h +++ b/lib/Grid.h @@ -24,21 +24,21 @@ #include #include +#ifndef MAX +#define MAX(x,y) ((x)>(y)?(x):(y)) +#define MIN(x,y) ((x)>(y)?(y):(x)) +#endif + #include //////////////////////////////////////////////////////////// // Tunable header includes //////////////////////////////////////////////////////////// -#ifdef HAVE_OPENMP -#define OMP -#include -#endif #ifdef HAVE_MALLOC_MALLOC_H #include #endif - #ifdef HAVE_MALLOC_H #include #endif diff --git a/lib/Grid_stencil.h b/lib/Grid_stencil.h index fa537f65..ce987746 100644 --- a/lib/Grid_stencil.h +++ b/lib/Grid_stencil.h @@ -250,7 +250,11 @@ namespace Grid { int buffer_size = _grid->_slice_nblock[dimension]*_grid->_slice_block[dimension]; int words = sizeof(cobj)/sizeof(vector_type); - /* FIXME ALTERNATE BUFFER DETERMINATION ; possibly slow to allocate*/ + /* + * possibly slow to allocate + * Doesn't matter in this test, but may want to preallocate in the + * dirac operators + */ std::vector > send_buf_extract(Nsimd,std::vector(buffer_size) ); std::vector > recv_buf_extract(Nsimd,std::vector(buffer_size) ); int bytes = buffer_size*sizeof(scalar_object); diff --git a/lib/Grid_threads.h b/lib/Grid_threads.h index 6c5f17e0..89a56d80 100644 --- a/lib/Grid_threads.h +++ b/lib/Grid_threads.h @@ -1,13 +1,17 @@ #ifndef GRID_THREADS_H #define GRID_THREADS_H -#ifdef HAVE_OPENMP +#ifdef _OPENMP +#define GRID_OMP +#endif + +#ifdef GRID_OMP #include #define PARALLEL_FOR_LOOP _Pragma("omp parallel for") -#define PARALLEL_NESTED_LOOP(n) _Pragma("omp parallel for collapse(" #n ")") +#define PARALLEL_NESTED_LOOP2 _Pragma("omp parallel for collapse(2)") #else #define PARALLEL_FOR_LOOP -#define PARALLEL_NESTED_LOOP(n) +#define PARALLEL_NESTED_LOOP2 #endif namespace Grid { @@ -20,7 +24,7 @@ class GridThread { static int _threads; static void SetThreads(int thr) { -#ifdef HAVE_OPENMP +#ifdef GRID_OMP _threads = MIN(thr,omp_get_max_threads()) ; omp_set_num_threads(_threads); #else @@ -28,7 +32,7 @@ class GridThread { #endif }; static void SetMaxThreads(void) { -#ifdef HAVE_OPENMP +#ifdef GRID_OMP _threads = omp_get_max_threads(); omp_set_num_threads(_threads); #else @@ -58,7 +62,7 @@ class GridThread { }; static int ThreadBarrier(void) { -#ifdef HAVE_OPENMP +#ifdef GRID_OMP #pragma omp barrier return omp_get_thread_num(); #else diff --git a/lib/cshift/Grid_cshift_common.h b/lib/cshift/Grid_cshift_common.h index 9864df73..c212171e 100644 --- a/lib/cshift/Grid_cshift_common.h +++ b/lib/cshift/Grid_cshift_common.h @@ -26,16 +26,15 @@ Gather_plane_simple (const Lattice &rhs,std::vector_ostride[dimension]; // base offset for start of plane - int bo = 0; // offset in buffer -PARALLEL_NESTED_LOOP(2) +PARALLEL_NESTED_LOOP2 for(int n=0;n_slice_nblock[dimension];n++){ for(int b=0;b_slice_block[dimension];b++){ - int o = n*rhs._grid->_slice_stride[dimension]; + int o = n*rhs._grid->_slice_stride[dimension]; + int bo = n*rhs._grid->_slice_block[dimension]; int ocb=1<CheckerBoardFromOindex(o+b);// Could easily be a table lookup if ( ocb &cbmask ) { - buffer[bo]=compress(rhs._odata[so+o+b]); - bo++; + buffer[bo+b]=compress(rhs._odata[so+o+b]); } } } @@ -55,9 +54,8 @@ Gather_plane_extract(const Lattice &rhs,std::vector_ostride[dimension]; // base offset for start of plane - int bo = 0; // offset in buffer -PARALLEL_NESTED_LOOP(2) +PARALLEL_NESTED_LOOP2 for(int n=0;n_slice_nblock[dimension];n++){ for(int b=0;b_slice_block[dimension];b++){ @@ -104,15 +102,15 @@ template void Scatter_plane_simple (Lattice &rhs,std::vector_ostride[dimension]; // base offset for start of plane - int bo = 0; // offset in buffer -PARALLEL_NESTED_LOOP(2) +PARALLEL_NESTED_LOOP2 for(int n=0;n_slice_nblock[dimension];n++){ for(int b=0;b_slice_block[dimension];b++){ - int o=n*rhs._grid->_slice_stride[dimension]; + int o =n*rhs._grid->_slice_stride[dimension]; + int bo =n*rhs._grid->_slice_block[dimension]; int ocb=1<CheckerBoardFromOindex(o+b);// Could easily be a table lookup if ( ocb & cbmask ) { - rhs._odata[so+o+b]=buffer[bo++]; + rhs._odata[so+o+b]=buffer[bo+b]; } } } @@ -131,7 +129,7 @@ PARALLEL_NESTED_LOOP(2) int so = plane*rhs._grid->_ostride[dimension]; // base offset for start of plane -PARALLEL_NESTED_LOOP(2) +PARALLEL_NESTED_LOOP2 for(int n=0;n_slice_nblock[dimension];n++){ for(int b=0;b_slice_block[dimension];b++){ @@ -160,7 +158,7 @@ template void Copy_plane(Lattice& lhs,Lattice &rhs, int int ro = rplane*rhs._grid->_ostride[dimension]; // base offset for start of plane int lo = lplane*lhs._grid->_ostride[dimension]; // base offset for start of plane -PARALLEL_NESTED_LOOP(2) +PARALLEL_NESTED_LOOP2 for(int n=0;n_slice_nblock[dimension];n++){ for(int b=0;b_slice_block[dimension];b++){ @@ -185,7 +183,7 @@ template void Copy_plane_permute(Lattice& lhs,Lattice &r int ro = rplane*rhs._grid->_ostride[dimension]; // base offset for start of plane int lo = lplane*lhs._grid->_ostride[dimension]; // base offset for start of plane -PARALLEL_NESTED_LOOP(2) +PARALLEL_NESTED_LOOP2 for(int n=0;n_slice_nblock[dimension];n++){ for(int b=0;b_slice_block[dimension];b++){ int o =n*rhs._grid->_slice_stride[dimension]; diff --git a/lib/cshift/Grid_cshift_mpi.h b/lib/cshift/Grid_cshift_mpi.h index 7c77ebc9..569017d8 100644 --- a/lib/cshift/Grid_cshift_mpi.h +++ b/lib/cshift/Grid_cshift_mpi.h @@ -1,10 +1,6 @@ #ifndef _GRID_CSHIFT_MPI_H_ #define _GRID_CSHIFT_MPI_H_ -#ifndef MAX -#define MAX(x,y) ((x)>(y)?(x):(y)) -#define MIN(x,y) ((x)>(y)?(y):(x)) -#endif namespace Grid { diff --git a/lib/qcd/Grid_qcd_wilson_dop.cc b/lib/qcd/Grid_qcd_wilson_dop.cc index f657208a..25f1d914 100644 --- a/lib/qcd/Grid_qcd_wilson_dop.cc +++ b/lib/qcd/Grid_qcd_wilson_dop.cc @@ -100,22 +100,21 @@ void WilsonMatrix::Dhop(const LatticeFermion &in, LatticeFermion &out) vHalfSpinColourVector chi; vSpinColourVector result; vHalfSpinColourVector Uchi; - vHalfSpinColourVector *chi_p; int offset,local,perm, ptype; PARALLEL_FOR_LOOP for(int sss=0;sssoSites();sss++){ int ss = sss; - int ssu= sss; - //int ss = Stencil._LebesgueReorder[sss]; + int ssu= ss; + // int ss = Stencil._LebesgueReorder[sss]; // Xp offset = Stencil._offsets [Xp][ss]; local = Stencil._is_local[Xp][ss]; perm = Stencil._permute[Xp][ss]; ptype = Stencil._permute_type[Xp]; - chi_p = &comm_buf[offset]; + if ( local && perm ) { spProjXp(tmp,in._odata[offset]);