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Small change in the HMC interface.

Browse Source 
Example of multiple levels in the WilsonFermion hmc test.

Merge remote-tracking branch 'upstream/master'

Conflicts:
	lib/qcd/hmc/HMC.h
	lib/qcd/hmc/integrators/Integrator.h
	lib/qcd/hmc/integrators/Integrator_algorithm.h
	tests/Test_simd.cc
This commit is contained in:
neo
2015-07-30 17:16:04 +09:00
parent 5fc6af1c77 4fe110bd07
commit 490009745c
100 changed files with 16360 additions and 1284 deletions
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374
configure vendored
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@ -626,13 +626,6 @@ ac_subst_vars='am__EXEEXT_FALSE
am__EXEEXT_TRUE
LTLIBOBJS
LIBOBJS
enable_latex_docs
enable_html_docs
enable_dot
DOXYGEN_DOC_FALSE
DOXYGEN_DOC_TRUE
DOT
DOXYGEN
BUILD_COMMS_NONE_FALSE
BUILD_COMMS_NONE_TRUE
BUILD_COMMS_MPI_FALSE
@ -647,7 +640,6 @@ CCDEPMODE
ac_ct_CC
CFLAGS
CC
HAVE_CXX11
RANLIB
OPENMP_CXXFLAGS
am__fastdepCXX_FALSE
@ -753,10 +745,6 @@ enable_openmp
enable_simd
enable_precision
enable_comms
enable_doxygen
enable_dot
enable_html_docs
enable_latex_docs
'
ac_precious_vars='build_alias
host_alias
@ -1402,11 +1390,6 @@ Optional Features:
--enable-precision=single|double
Select default word size of Real
--enable-comms=none|mpi Select communications
--enable-doxygen enable documentation generation with doxygen (auto)
--enable-dot use 'dot' to generate graphs in doxygen (auto)
--enable-html-docs enable HTML generation with doxygen (yes)
--enable-latex-docs enable LaTeX documentation generation with doxygen
(no)
Some influential environment variables:
CXX C++ compiler command
@ -3157,7 +3140,7 @@ END
fi
ac_config_headers="$ac_config_headers lib/GridConfig.h"
ac_config_headers="$ac_config_headers lib/Config.h"
# Check whether --enable-silent-rules was given.
if test "${enable_silent_rules+set}" = set; then :
@ -4076,190 +4059,7 @@ else
RANLIB="$ac_cv_prog_RANLIB"
fi
ax_cxx_compile_cxx11_required=true
ac_ext=cpp
ac_cpp='$CXXCPP $CPPFLAGS'
ac_compile='$CXX -c $CXXFLAGS $CPPFLAGS conftest.$ac_ext >&5'
ac_link='$CXX -o conftest$ac_exeext $CXXFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
ac_compiler_gnu=$ac_cv_cxx_compiler_gnu
ac_success=no
{ $as_echo "$as_me:${as_lineno-$LINENO}: checking whether $CXX supports C++11 features by default" >&5
$as_echo_n "checking whether $CXX supports C++11 features by default... " >&6; }
if ${ax_cv_cxx_compile_cxx11+:} false; then :
$as_echo_n "(cached) " >&6
else
cat confdefs.h - <<_ACEOF >conftest.$ac_ext
/* end confdefs.h. */
template <typename T>
struct check
{
static_assert(sizeof(int) <= sizeof(T), "not big enough");
};
struct Base {
virtual void f() {}
};
struct Child : public Base {
virtual void f() override {}
};
typedef check<check<bool>> right_angle_brackets;
int a;
decltype(a) b;
typedef check<int> check_type;
check_type c;
check_type&& cr = static_cast<check_type&&>(c);
auto d = a;
auto l = [](){};
// Prevent Clang error: unused variable 'l' [-Werror,-Wunused-variable]
struct use_l { use_l() { l(); } };
// http://stackoverflow.com/questions/13728184/template-aliases-and-sfinae
// Clang 3.1 fails with headers of libstd++ 4.8.3 when using std::function because of this
namespace test_template_alias_sfinae {
struct foo {};
template<typename T>
using member = typename T::member_type;
template<typename T>
void func(...) {}
template<typename T>
void func(member<T>*) {}
void test();
void test() {
func<foo>(0);
}
}
_ACEOF
if ac_fn_cxx_try_compile "$LINENO"; then :
ax_cv_cxx_compile_cxx11=yes
else
ax_cv_cxx_compile_cxx11=no
fi
rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
fi
{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ax_cv_cxx_compile_cxx11" >&5
$as_echo "$ax_cv_cxx_compile_cxx11" >&6; }
if test x$ax_cv_cxx_compile_cxx11 = xyes; then
ac_success=yes
fi
if test x$ac_success = xno; then
for switch in -std=c++11 -std=c++0x +std=c++11; do
cachevar=`$as_echo "ax_cv_cxx_compile_cxx11_$switch" | $as_tr_sh`
{ $as_echo "$as_me:${as_lineno-$LINENO}: checking whether $CXX supports C++11 features with $switch" >&5
$as_echo_n "checking whether $CXX supports C++11 features with $switch... " >&6; }
if eval \${$cachevar+:} false; then :
$as_echo_n "(cached) " >&6
else
ac_save_CXXFLAGS="$CXXFLAGS"
CXXFLAGS="$CXXFLAGS $switch"
cat confdefs.h - <<_ACEOF >conftest.$ac_ext
/* end confdefs.h. */
template <typename T>
struct check
{
static_assert(sizeof(int) <= sizeof(T), "not big enough");
};
struct Base {
virtual void f() {}
};
struct Child : public Base {
virtual void f() override {}
};
typedef check<check<bool>> right_angle_brackets;
int a;
decltype(a) b;
typedef check<int> check_type;
check_type c;
check_type&& cr = static_cast<check_type&&>(c);
auto d = a;
auto l = [](){};
// Prevent Clang error: unused variable 'l' [-Werror,-Wunused-variable]
struct use_l { use_l() { l(); } };
// http://stackoverflow.com/questions/13728184/template-aliases-and-sfinae
// Clang 3.1 fails with headers of libstd++ 4.8.3 when using std::function because of this
namespace test_template_alias_sfinae {
struct foo {};
template<typename T>
using member = typename T::member_type;
template<typename T>
void func(...) {}
template<typename T>
void func(member<T>*) {}
void test();
void test() {
func<foo>(0);
}
}
_ACEOF
if ac_fn_cxx_try_compile "$LINENO"; then :
eval $cachevar=yes
else
eval $cachevar=no
fi
rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
CXXFLAGS="$ac_save_CXXFLAGS"
fi
eval ac_res=\$$cachevar
{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_res" >&5
$as_echo "$ac_res" >&6; }
if eval test x\$$cachevar = xyes; then
CXXFLAGS="$CXXFLAGS $switch"
ac_success=yes
break
fi
done
fi
ac_ext=cpp
ac_cpp='$CXXCPP $CPPFLAGS'
ac_compile='$CXX -c $CXXFLAGS $CPPFLAGS conftest.$ac_ext >&5'
ac_link='$CXX -o conftest$ac_exeext $CXXFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
ac_compiler_gnu=$ac_cv_cxx_compiler_gnu
if test x$ax_cxx_compile_cxx11_required = xtrue; then
if test x$ac_success = xno; then
as_fn_error $? "*** A compiler with support for C++11 language features is required." "$LINENO" 5
fi
else
if test x$ac_success = xno; then
HAVE_CXX11=0
{ $as_echo "$as_me:${as_lineno-$LINENO}: No compiler with C++11 support was found" >&5
$as_echo "$as_me: No compiler with C++11 support was found" >&6;}
else
HAVE_CXX11=1
$as_echo "#define HAVE_CXX11 1" >>confdefs.h
fi
fi
#AX_CXX_COMPILE_STDCXX_11(noext, mandatory)
ac_ext=c
ac_cpp='$CPP $CPPFLAGS'
ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5'
@ -6005,7 +5805,6 @@ $as_echo "$as_me: WARNING: Your processor supports fma instructions but not your
# Checks for libraries.
#AX_GCC_VAR_ATTRIBUTE(aligned)
@ -6659,7 +6458,6 @@ Info at: http://www.mpfr.org/" "$LINENO" 5
fi
# Check whether --enable-simd was given.
if test "${enable_simd+set}" = set; then :
enableval=$enable_simd; \
@ -6799,160 +6597,15 @@ fi
###################################################################
# Checks for doxygen support
# if present enables the "make doxyfile" command
echo
echo Checking doxygen support
echo :::::::::::::::::::::::::::::::::::::::::::
#echo
#echo Checking doxygen support
#echo :::::::::::::::::::::::::::::::::::::::::::
#AC_PROG_DOXYGEN
# Check whether --enable-doxygen was given.
if test "${enable_doxygen+set}" = set; then :
enableval=$enable_doxygen;
fi
# Check whether --enable-dot was given.
if test "${enable_dot+set}" = set; then :
enableval=$enable_dot;
fi
# Check whether --enable-html-docs was given.
if test "${enable_html_docs+set}" = set; then :
enableval=$enable_html_docs;
else
enable_html_docs=yes
fi
# Check whether --enable-latex-docs was given.
if test "${enable_latex_docs+set}" = set; then :
enableval=$enable_latex_docs;
else
enable_latex_docs=no
fi
if test "x$enable_doxygen" = xno; then
enable_doc=no
else
# Extract the first word of "doxygen", so it can be a program name with args.
set dummy doxygen; ac_word=$2
{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5
$as_echo_n "checking for $ac_word... " >&6; }
if ${ac_cv_prog_DOXYGEN+:} false; then :
$as_echo_n "(cached) " >&6
else
if test -n "$DOXYGEN"; then
ac_cv_prog_DOXYGEN="$DOXYGEN" # Let the user override the test.
else
as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
for as_dir in $PATH
do
IFS=$as_save_IFS
test -z "$as_dir" && as_dir=.
for ac_exec_ext in '' $ac_executable_extensions; do
if as_fn_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
ac_cv_prog_DOXYGEN="doxygen"
$as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5
break 2
fi
done
done
IFS=$as_save_IFS
fi
fi
DOXYGEN=$ac_cv_prog_DOXYGEN
if test -n "$DOXYGEN"; then
{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $DOXYGEN" >&5
$as_echo "$DOXYGEN" >&6; }
else
{ $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5
$as_echo "no" >&6; }
fi
if test x$DOXYGEN = x; then
if test "x$enable_doxygen" = xyes; then
as_fn_error $? "could not find doxygen" "$LINENO" 5
fi
enable_doc=no
else
doxy_ver=`doxygen --version`
doxy_major=`expr "$doxy_ver" : '\([0-9]\)\..*'`
doxy_minor=`expr "$doxy_ver" : '[0-9]\.\([0-9]\).*'`
if test $doxy_major -eq "1" -a $doxy_minor -ge "3" ; then
enable_doc=yes
# Extract the first word of "dot", so it can be a program name with args.
set dummy dot; ac_word=$2
{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5
$as_echo_n "checking for $ac_word... " >&6; }
if ${ac_cv_prog_DOT+:} false; then :
$as_echo_n "(cached) " >&6
else
if test -n "$DOT"; then
ac_cv_prog_DOT="$DOT" # Let the user override the test.
else
as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
for as_dir in $PATH
do
IFS=$as_save_IFS
test -z "$as_dir" && as_dir=.
for ac_exec_ext in '' $ac_executable_extensions; do
if as_fn_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
ac_cv_prog_DOT="dot"
$as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5
break 2
fi
done
done
IFS=$as_save_IFS
fi
fi
DOT=$ac_cv_prog_DOT
if test -n "$DOT"; then
{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $DOT" >&5
$as_echo "$DOT" >&6; }
else
{ $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5
$as_echo "no" >&6; }
fi
else
{ $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: doxygen version $doxy_ver too old, doxygen will not be used." >&5
$as_echo "$as_me: WARNING: doxygen version $doxy_ver too old, doxygen will not be used." >&2;}
enable_doc=no
fi
fi
fi
if test x$enable_doc = xyes; then
DOXYGEN_DOC_TRUE=
DOXYGEN_DOC_FALSE='#'
else
DOXYGEN_DOC_TRUE='#'
DOXYGEN_DOC_FALSE=
fi
if test x$DOT = x; then
if test "x$enable_dot" = xyes; then
as_fn_error $? "could not find dot" "$LINENO" 5
fi
enable_dot=no
else
enable_dot=yes
fi
if test -n "$DOXYGEN"
then
ac_config_files="$ac_config_files docs/doxy.cfg"
fi
#if test -n "$DOXYGEN"
#then
#AC_CONFIG_FILES([docs/doxy.cfg])
#fi
echo
echo Creating configuration files
@ -7110,10 +6763,6 @@ if test -z "${BUILD_COMMS_NONE_TRUE}" && test -z "${BUILD_COMMS_NONE_FALSE}"; th
as_fn_error $? "conditional \"BUILD_COMMS_NONE\" was never defined.
Usually this means the macro was only invoked conditionally." "$LINENO" 5
fi
if test -z "${DOXYGEN_DOC_TRUE}" && test -z "${DOXYGEN_DOC_FALSE}"; then
as_fn_error $? "conditional \"DOXYGEN_DOC\" was never defined.
Usually this means the macro was only invoked conditionally." "$LINENO" 5
fi
: "${CONFIG_STATUS=./config.status}"
ac_write_fail=0
@ -7706,9 +7355,8 @@ cat >>$CONFIG_STATUS <<\_ACEOF || ac_write_fail=1
for ac_config_target in $ac_config_targets
do
case $ac_config_target in
"lib/GridConfig.h") CONFIG_HEADERS="$CONFIG_HEADERS lib/GridConfig.h" ;;
"lib/Config.h") CONFIG_HEADERS="$CONFIG_HEADERS lib/Config.h" ;;
"depfiles") CONFIG_COMMANDS="$CONFIG_COMMANDS depfiles" ;;
"docs/doxy.cfg") CONFIG_FILES="$CONFIG_FILES docs/doxy.cfg" ;;
"Makefile") CONFIG_FILES="$CONFIG_FILES Makefile" ;;
"lib/Makefile") CONFIG_FILES="$CONFIG_FILES lib/Makefile" ;;
"tests/Makefile") CONFIG_FILES="$CONFIG_FILES tests/Makefile" ;;