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Refactoring header layout
This commit is contained in:
paboyle
73
lib/algorithms/Algorithms.h
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73
lib/algorithms/Algorithms.h
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/*************************************************************************************
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Grid physics library, www.github.com/paboyle/Grid
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Source file: ./lib/Algorithms.h
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Copyright (C) 2015
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Author: Azusa Yamaguchi <ayamaguc@staffmail.ed.ac.uk>
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Author: Peter Boyle <paboyle@ph.ed.ac.uk>
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This program is free software; you can redistribute it and/or modify
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it under the terms of the GNU General Public License as published by
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the Free Software Foundation; either version 2 of the License, or
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(at your option) any later version.
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This program is distributed in the hope that it will be useful,
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but WITHOUT ANY WARRANTY; without even the implied warranty of
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MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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GNU General Public License for more details.
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You should have received a copy of the GNU General Public License along
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with this program; if not, write to the Free Software Foundation, Inc.,
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51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
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See the full license in the file "LICENSE" in the top level distribution directory
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*************************************************************************************/
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/* END LEGAL */
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#ifndef GRID_ALGORITHMS_H
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#define GRID_ALGORITHMS_H
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#include <Grid/algorithms/SparseMatrix.h>
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#include <Grid/algorithms/LinearOperator.h>
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#include <Grid/algorithms/Preconditioner.h>
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#include <Grid/algorithms/approx/Zolotarev.h>
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#include <Grid/algorithms/approx/Chebyshev.h>
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#include <Grid/algorithms/approx/Remez.h>
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#include <Grid/algorithms/approx/MultiShiftFunction.h>
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#include <Grid/algorithms/iterative/ConjugateGradient.h>
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#include <Grid/algorithms/iterative/ConjugateResidual.h>
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#include <Grid/algorithms/iterative/NormalEquations.h>
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#include <Grid/algorithms/iterative/SchurRedBlack.h>
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#include <Grid/algorithms/iterative/ConjugateGradientMultiShift.h>
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#include <Grid/algorithms/iterative/ConjugateGradientMixedPrec.h>
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// Lanczos support
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#include <Grid/algorithms/iterative/MatrixUtils.h>
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#include <Grid/algorithms/iterative/ImplicitlyRestartedLanczos.h>
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#include <Grid/algorithms/CoarsenedMatrix.h>
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#include <Grid/algorithms/FFT.h>
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// Eigen/lanczos
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// EigCg
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// MCR
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// Pcg
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// Multishift CG
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// Hdcg
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// GCR
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// etc..
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// integrator/Leapfrog
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// integrator/Omelyan
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// integrator/ForceGradient
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// montecarlo/hmc
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// montecarlo/rhmc
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// montecarlo/metropolis
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// etc...
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#endif
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305
lib/algorithms/FFT.h
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305
lib/algorithms/FFT.h
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@@ -0,0 +1,305 @@
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/*************************************************************************************
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Grid physics library, www.github.com/paboyle/Grid
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Source file: ./lib/Cshift.h
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Copyright (C) 2015
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Author: Peter Boyle <paboyle@ph.ed.ac.uk>
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This program is free software; you can redistribute it and/or modify
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it under the terms of the GNU General Public License as published by
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the Free Software Foundation; either version 2 of the License, or
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(at your option) any later version.
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This program is distributed in the hope that it will be useful,
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but WITHOUT ANY WARRANTY; without even the implied warranty of
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MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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GNU General Public License for more details.
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You should have received a copy of the GNU General Public License along
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with this program; if not, write to the Free Software Foundation, Inc.,
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51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
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See the full license in the file "LICENSE" in the top level distribution directory
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*************************************************************************************/
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/* END LEGAL */
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#ifndef _GRID_FFT_H_
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#define _GRID_FFT_H_
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#ifdef HAVE_FFTW
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#ifdef USE_MKL
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#include <fftw/fftw3.h>
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#else
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#include <fftw3.h>
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#endif
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#endif
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namespace Grid {
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template<class scalar> struct FFTW { };
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#ifdef HAVE_FFTW
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template<> struct FFTW<ComplexD> {
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public:
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typedef fftw_complex FFTW_scalar;
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typedef fftw_plan FFTW_plan;
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static FFTW_plan fftw_plan_many_dft(int rank, const int *n,int howmany,
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FFTW_scalar *in, const int *inembed,
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int istride, int idist,
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FFTW_scalar *out, const int *onembed,
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int ostride, int odist,
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int sign, unsigned flags) {
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return ::fftw_plan_many_dft(rank,n,howmany,in,inembed,istride,idist,out,onembed,ostride,odist,sign,flags);
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}
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static void fftw_flops(const FFTW_plan p,double *add, double *mul, double *fmas){
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::fftw_flops(p,add,mul,fmas);
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}
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inline static void fftw_execute_dft(const FFTW_plan p,FFTW_scalar *in,FFTW_scalar *out) {
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::fftw_execute_dft(p,in,out);
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}
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inline static void fftw_destroy_plan(const FFTW_plan p) {
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::fftw_destroy_plan(p);
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}
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};
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template<> struct FFTW<ComplexF> {
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public:
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typedef fftwf_complex FFTW_scalar;
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typedef fftwf_plan FFTW_plan;
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static FFTW_plan fftw_plan_many_dft(int rank, const int *n,int howmany,
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FFTW_scalar *in, const int *inembed,
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int istride, int idist,
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FFTW_scalar *out, const int *onembed,
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int ostride, int odist,
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int sign, unsigned flags) {
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return ::fftwf_plan_many_dft(rank,n,howmany,in,inembed,istride,idist,out,onembed,ostride,odist,sign,flags);
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}
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static void fftw_flops(const FFTW_plan p,double *add, double *mul, double *fmas){
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::fftwf_flops(p,add,mul,fmas);
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}
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inline static void fftw_execute_dft(const FFTW_plan p,FFTW_scalar *in,FFTW_scalar *out) {
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::fftwf_execute_dft(p,in,out);
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}
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inline static void fftw_destroy_plan(const FFTW_plan p) {
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::fftwf_destroy_plan(p);
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}
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};
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#endif
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#ifndef FFTW_FORWARD
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#define FFTW_FORWARD (-1)
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#define FFTW_BACKWARD (+1)
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#endif
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class FFT {
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private:
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GridCartesian *vgrid;
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GridCartesian *sgrid;
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int Nd;
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double flops;
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double flops_call;
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uint64_t usec;
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std::vector<int> dimensions;
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std::vector<int> processors;
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std::vector<int> processor_coor;
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public:
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static const int forward=FFTW_FORWARD;
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static const int backward=FFTW_BACKWARD;
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double Flops(void) {return flops;}
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double MFlops(void) {return flops/usec;}
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double USec(void) {return (double)usec;}
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FFT ( GridCartesian * grid ) :
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vgrid(grid),
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Nd(grid->_ndimension),
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dimensions(grid->_fdimensions),
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processors(grid->_processors),
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processor_coor(grid->_processor_coor)
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{
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flops=0;
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usec =0;
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std::vector<int> layout(Nd,1);
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sgrid = new GridCartesian(dimensions,layout,processors);
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};
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~FFT ( void) {
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delete sgrid;
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}
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template<class vobj>
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void FFT_dim_mask(Lattice<vobj> &result,const Lattice<vobj> &source,std::vector<int> mask,int sign){
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conformable(result._grid,vgrid);
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conformable(source._grid,vgrid);
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Lattice<vobj> tmp(vgrid);
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tmp = source;
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for(int d=0;d<Nd;d++){
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if( mask[d] ) {
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FFT_dim(result,tmp,d,sign);
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tmp=result;
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}
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}
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}
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template<class vobj>
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void FFT_all_dim(Lattice<vobj> &result,const Lattice<vobj> &source,int sign){
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std::vector<int> mask(Nd,1);
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FFT_dim_mask(result,source,mask,sign);
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}
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template<class vobj>
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void FFT_dim(Lattice<vobj> &result,const Lattice<vobj> &source,int dim, int sign){
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#ifndef HAVE_FFTW
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assert(0);
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#else
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conformable(result._grid,vgrid);
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conformable(source._grid,vgrid);
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int L = vgrid->_ldimensions[dim];
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int G = vgrid->_fdimensions[dim];
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std::vector<int> layout(Nd,1);
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std::vector<int> pencil_gd(vgrid->_fdimensions);
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pencil_gd[dim] = G*processors[dim];
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// Pencil global vol LxLxGxLxL per node
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GridCartesian pencil_g(pencil_gd,layout,processors);
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// Construct pencils
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typedef typename vobj::scalar_object sobj;
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typedef typename sobj::scalar_type scalar;
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Lattice<sobj> pgbuf(&pencil_g);
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typedef typename FFTW<scalar>::FFTW_scalar FFTW_scalar;
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typedef typename FFTW<scalar>::FFTW_plan FFTW_plan;
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int Ncomp = sizeof(sobj)/sizeof(scalar);
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int Nlow = 1;
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for(int d=0;d<dim;d++){
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Nlow*=vgrid->_ldimensions[d];
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}
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int rank = 1; /* 1d transforms */
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int n[] = {G}; /* 1d transforms of length G */
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int howmany = Ncomp;
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int odist,idist,istride,ostride;
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idist = odist = 1; /* Distance between consecutive FT's */
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istride = ostride = Ncomp*Nlow; /* distance between two elements in the same FT */
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int *inembed = n, *onembed = n;
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scalar div;
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if ( sign == backward ) div = 1.0/G;
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else if ( sign == forward ) div = 1.0;
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else assert(0);
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FFTW_plan p;
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{
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FFTW_scalar *in = (FFTW_scalar *)&pgbuf._odata[0];
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FFTW_scalar *out= (FFTW_scalar *)&pgbuf._odata[0];
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p = FFTW<scalar>::fftw_plan_many_dft(rank,n,howmany,
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in,inembed,
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istride,idist,
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out,onembed,
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ostride, odist,
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sign,FFTW_ESTIMATE);
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}
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// Barrel shift and collect global pencil
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std::vector<int> lcoor(Nd), gcoor(Nd);
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result = source;
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for(int p=0;p<processors[dim];p++) {
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PARALLEL_REGION
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{
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std::vector<int> cbuf(Nd);
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sobj s;
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PARALLEL_FOR_LOOP_INTERN
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for(int idx=0;idx<sgrid->lSites();idx++) {
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sgrid->LocalIndexToLocalCoor(idx,cbuf);
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peekLocalSite(s,result,cbuf);
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cbuf[dim]+=p*L;
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pokeLocalSite(s,pgbuf,cbuf);
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}
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}
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if (p != processors[dim] - 1)
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{
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result = Cshift(result,dim,L);
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}
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}
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// Loop over orthog coords
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int NN=pencil_g.lSites();
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GridStopWatch timer;
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timer.Start();
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PARALLEL_REGION
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{
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std::vector<int> cbuf(Nd);
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PARALLEL_FOR_LOOP_INTERN
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for(int idx=0;idx<NN;idx++) {
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pencil_g.LocalIndexToLocalCoor(idx, cbuf);
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if ( cbuf[dim] == 0 ) { // restricts loop to plane at lcoor[dim]==0
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FFTW_scalar *in = (FFTW_scalar *)&pgbuf._odata[idx];
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FFTW_scalar *out= (FFTW_scalar *)&pgbuf._odata[idx];
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FFTW<scalar>::fftw_execute_dft(p,in,out);
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}
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}
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}
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timer.Stop();
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// performance counting
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double add,mul,fma;
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FFTW<scalar>::fftw_flops(p,&add,&mul,&fma);
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flops_call = add+mul+2.0*fma;
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usec += timer.useconds();
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flops+= flops_call*NN;
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// writing out result
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int pc = processor_coor[dim];
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PARALLEL_REGION
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{
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std::vector<int> clbuf(Nd), cgbuf(Nd);
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sobj s;
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PARALLEL_FOR_LOOP_INTERN
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for(int idx=0;idx<sgrid->lSites();idx++) {
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sgrid->LocalIndexToLocalCoor(idx,clbuf);
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cgbuf = clbuf;
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cgbuf[dim] = clbuf[dim]+L*pc;
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peekLocalSite(s,pgbuf,cgbuf);
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pokeLocalSite(s,result,clbuf);
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}
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}
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result = result*div;
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// destroying plan
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FFTW<scalar>::fftw_destroy_plan(p);
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#endif
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}
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};
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}
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#endif
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@@ -25,7 +25,7 @@ Author: Azusa Yamaguchi <ayamaguc@staffmail.ed.ac.uk>
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See the full license in the file "LICENSE" in the top level distribution directory
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*************************************************************************************/
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/* END LEGAL */
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#include <Grid.h>
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#include <Grid/GridCore.h>
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namespace Grid {
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double MultiShiftFunction::approx(double x)
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@@ -20,7 +20,7 @@
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#include<iomanip>
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#include<cassert>
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#include<algorithms/approx/Remez.h>
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#include<Grid/algorithms/approx/Remez.h>
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// Constructor
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AlgRemez::AlgRemez(double lower, double upper, long precision)
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@@ -16,7 +16,7 @@
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#define INCLUDED_ALG_REMEZ_H
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#include <stddef.h>
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#include <Config.h>
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#include <Grid/Config.h>
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#ifdef HAVE_LIBGMP
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#include "bigfloat.h"
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