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Merge branch 'master' of https://github.com/paboyle/Grid into scidac1_2

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Conflicts:
	lib/qcd/action/fermion/WilsonKernels.h
This commit is contained in:
Jung
2016-01-11 11:36:45 -05:00
parent 5924e5a562 c99d748da6
commit 5c57d4f403
268 changed files with 12202 additions and 1707 deletions
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28
lib/Algorithms.h
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@ -1,3 +1,31 @@
/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: ./lib/Algorithms.h
Copyright (C) 2015
Author: Azusa Yamaguchi <ayamaguc@staffmail.ed.ac.uk>
Author: Peter Boyle <paboyle@ph.ed.ac.uk>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#ifndef GRID_ALGORITHMS_H
#define GRID_ALGORITHMS_H

28
lib/AlignedAllocator.h
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@ -1,3 +1,31 @@
/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: ./lib/AlignedAllocator.h
Copyright (C) 2015
Author: Azusa Yamaguchi <ayamaguc@staffmail.ed.ac.uk>
Author: Peter Boyle <paboyle@ph.ed.ac.uk>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#ifndef GRID_ALIGNED_ALLOCATOR_H
#define GRID_ALIGNED_ALLOCATOR_H

27
lib/Cartesian.h
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@ -1,3 +1,30 @@
/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: ./lib/Cartesian.h
Copyright (C) 2015
Author: Peter Boyle <paboyle@ph.ed.ac.uk>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#ifndef GRID_CARTESIAN_H
#define GRID_CARTESIAN_H

27
lib/Communicator.h
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@ -1,3 +1,30 @@
/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: ./lib/Communicator.h
Copyright (C) 2015
Author: Peter Boyle <paboyle@ph.ed.ac.uk>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#ifndef GRID_COMMUNICATOR_H
#define GRID_COMMUNICATOR_H

6
lib/Config.h.in
View File

@ -143,6 +143,12 @@
/* Define to the version of this package. */
#undef PACKAGE_VERSION
/* RNG_MT19937 */
#undef RNG_MT19937
/* RNG_RANLUX */
#undef RNG_RANLUX
/* SSE4 Intrinsics */
#undef SSE4

27
lib/Cshift.h
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@ -1,3 +1,30 @@
/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: ./lib/Cshift.h
Copyright (C) 2015
Author: Peter Boyle <paboyle@ph.ed.ac.uk>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#ifndef _GRID_CSHIFT_H_
#define _GRID_CSHIFT_H_

36
lib/Grid.h
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@ -1,3 +1,32 @@
/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: ./lib/Grid.h
Copyright (C) 2015
Author: Peter Boyle <paboyle@ph.ed.ac.uk>
Author: azusayamaguchi <ayamaguc@YAMAKAZE.local>
Author: paboyle <paboyle@ph.ed.ac.uk>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
//
// Grid.h
// simd
@ -44,11 +73,14 @@
#include <Cshift.h>
#include <Stencil.h>
#include <Algorithms.h>
#include <qcd/QCD.h>
#include <parallelIO/BinaryIO.h>
#include <qcd/QCD.h>
#include <parallelIO/NerscIO.h>
#include <Init.h>
#include <qcd/hmc/NerscCheckpointer.h>
#include <qcd/hmc/HmcRunner.h>
#endif

64
lib/Init.cc
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@ -1,3 +1,33 @@
/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: ./lib/Init.cc
Copyright (C) 2015
Author: Azusa Yamaguchi <ayamaguc@staffmail.ed.ac.uk>
Author: Peter Boyle <paboyle@ph.ed.ac.uk>
Author: Peter Boyle <peterboyle@MacBook-Pro.local>
Author: paboyle <paboyle@ph.ed.ac.uk>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
/****************************************************************************/
/* pab: Signal magic. Processor state dump is x86-64 specific */
/****************************************************************************/
@ -171,7 +201,7 @@ void Grid_init(int *argc,char ***argv)
std::cout<<GridLogMessage<<"--mpi n.n.n.n : default MPI decomposition"<<std::endl;
std::cout<<GridLogMessage<<"--omp n : default number of OMP threads"<<std::endl;
std::cout<<GridLogMessage<<"--grid n.n.n.n : default Grid size"<<std::endl;
std::cout<<GridLogMessage<<"--log list : comma separted list of streams from Error,Warning,Message,Performance,Iterative,Debug"<<std::endl;
std::cout<<GridLogMessage<<"--log list : comma separted list of streams from Error,Warning,Message,Performance,Iterative,Integrator,Debug"<<std::endl;
}
if( GridCmdOptionExists(*argv,*argv+*argc,"--log") ){
@ -212,7 +242,37 @@ void Grid_init(int *argc,char ***argv)
std::cout<<GridLogMessage<<"\tvComplexD : "<<sizeof(vComplexD)*8 <<"bits ; " <<GridCmdVectorIntToString(GridDefaultSimd(4,vComplexD::Nsimd()))<<std::endl;
}
std::cout <<std::endl;
std::cout <<Logger::RED << "__|__|__|__|__"<< "|__|__|_"<<Logger::PURPLE<<"_|__|__|"<< "__|__|__|__|__"<<std::endl;
std::cout <<Logger::RED << "__|__|__|__|__"<< "|__|__|_"<<Logger::PURPLE<<"_|__|__|"<< "__|__|__|__|__"<<std::endl;
std::cout <<Logger::RED << "__|__| | | "<< "| | | "<<Logger::PURPLE<<" | | |"<< " | | | _|__"<<std::endl;
std::cout <<Logger::RED << "__|__ "<< " "<<Logger::PURPLE<<" "<< " _|__"<<std::endl;
std::cout <<Logger::RED << "__|_ "<<Logger::GREEN<<" GGGG "<<Logger::RED<<" RRRR "<<Logger::BLUE <<" III "<<Logger::PURPLE<<"DDDD "<<Logger::PURPLE<<" _|__"<<std::endl;
std::cout <<Logger::RED << "__|_ "<<Logger::GREEN<<"G "<<Logger::RED<<" R R "<<Logger::BLUE <<" I "<<Logger::PURPLE<<"D D "<<Logger::PURPLE<<" _|__"<<std::endl;
std::cout <<Logger::RED << "__|_ "<<Logger::GREEN<<"G "<<Logger::RED<<" R R "<<Logger::BLUE <<" I "<<Logger::PURPLE<<"D D"<<Logger::PURPLE<<" _|__"<<std::endl;
std::cout <<Logger::BLUE << "__|_ "<<Logger::GREEN<<"G GG "<<Logger::RED<<" RRRR "<<Logger::BLUE <<" I "<<Logger::PURPLE<<"D D"<<Logger::GREEN <<" _|__"<<std::endl;
std::cout <<Logger::BLUE << "__|_ "<<Logger::GREEN<<"G G "<<Logger::RED<<" R R "<<Logger::BLUE <<" I "<<Logger::PURPLE<<"D D "<<Logger::GREEN <<" _|__"<<std::endl;
std::cout <<Logger::BLUE << "__|_ "<<Logger::GREEN<<" GGGG "<<Logger::RED<<" R R "<<Logger::BLUE <<" III "<<Logger::PURPLE<<"DDDD "<<Logger::GREEN <<" _|__"<<std::endl;
std::cout <<Logger::BLUE << "__|__ "<< " "<<Logger::GREEN <<" "<< " _|__"<<std::endl;
std::cout <<Logger::BLUE << "__|__|__|__|__"<< "|__|__|_"<<Logger::GREEN <<"_|__|__|"<< "__|__|__|__|__"<<std::endl;
std::cout <<Logger::BLUE << "__|__|__|__|__"<< "|__|__|_"<<Logger::GREEN <<"_|__|__|"<< "__|__|__|__|__"<<std::endl;
std::cout <<Logger::BLUE << " | | | | "<< "| | | "<<Logger::GREEN <<" | | |"<< " | | | | "<<std::endl;
std::cout << std::endl;
std::cout << std::endl;
std::cout <<Logger::YELLOW<< std::endl;
std::cout << "Copyright (C) 2015 Peter Boyle, Azusa Yamaguchi, Guido Cossu, Antonin Portelli and other authors"<<std::endl;
std::cout << "Colours by Tadahito Boyle "<<std::endl;
std::cout << std::endl;
std::cout << "This program is free software; you can redistribute it and/or modify"<<std::endl;
std::cout << "it under the terms of the GNU General Public License as published by"<<std::endl;
std::cout << "the Free Software Foundation; either version 2 of the License, or"<<std::endl;
std::cout << "(at your option) any later version."<<std::endl;
std::cout << std::endl;
std::cout << "This program is distributed in the hope that it will be useful,"<<std::endl;
std::cout << "but WITHOUT ANY WARRANTY; without even the implied warranty of"<<std::endl;
std::cout << "MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the"<<std::endl;
std::cout << "GNU General Public License for more details."<<std::endl;
std::cout << Logger::BLACK <<std::endl;
}

30
lib/Init.h
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@ -1,3 +1,31 @@
/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: ./lib/Init.h
Copyright (C) 2015
Author: Peter Boyle <paboyle@ph.ed.ac.uk>
Author: paboyle <paboyle@ph.ed.ac.uk>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#ifndef GRID_INIT_H
#define GRID_INIT_H
@ -21,6 +49,8 @@ namespace Grid {
std::string GridCmdOptionPayload(char ** begin, char ** end, const std::string & option);
bool GridCmdOptionExists(char** begin, char** end, const std::string& option);
std::string GridCmdVectorIntToString(const std::vector<int> & vec);
void GridCmdOptionCSL(std::string str,std::vector<std::string> & vec);
void GridCmdOptionIntVector(std::string &str,std::vector<int> & vec);
void GridParseLayout(char **argv,int argc,
std::vector<int> &latt,

27
lib/Lattice.h
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@ -1,3 +1,30 @@
/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: ./lib/Lattice.h
Copyright (C) 2015
Author: Peter Boyle <paboyle@ph.ed.ac.uk>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#ifndef GRID_LATTICE_H
#define GRID_LATTICE_H

59
lib/Log.cc
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@ -1,16 +1,56 @@
/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: ./lib/Log.cc
Copyright (C) 2015
Author: Antonin Portelli <antonin.portelli@me.com>
Author: Azusa Yamaguchi <ayamaguc@staffmail.ed.ac.uk>
Author: Peter Boyle <paboyle@ph.ed.ac.uk>
Author: paboyle <paboyle@ph.ed.ac.uk>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#include <Grid.h>
namespace Grid {
GridStopWatch Logger::StopWatch;
std::ostream Logger::devnull(0);
std::string Logger::BLACK("\033[30m");
std::string Logger::RED("\033[31m");
std::string Logger::GREEN("\033[32m");
std::string Logger::YELLOW("\033[33m");
std::string Logger::BLUE("\033[34m");
std::string Logger::PURPLE("\033[35m");
std::string Logger::CYAN("\033[36m");
std::string Logger::WHITE("\033[37m");
std::string Logger::NORMAL("\033[0;39m");
GridLogger GridLogError (1,"Error");
GridLogger GridLogWarning (1,"Warning");
GridLogger GridLogMessage (1,"Message");
GridLogger GridLogDebug (1,"Debug");
GridLogger GridLogPerformance(1,"Performance");
GridLogger GridLogIterative (1,"Iterative");
GridLogger GridLogError (1,"Error",Logger::RED);
GridLogger GridLogWarning (1,"Warning",Logger::YELLOW);
GridLogger GridLogMessage (1,"Message",Logger::BLACK);
GridLogger GridLogDebug (1,"Debug",Logger::PURPLE);
GridLogger GridLogPerformance(1,"Performance",Logger::GREEN);
GridLogger GridLogIterative (1,"Iterative",Logger::BLUE);
GridLogger GridLogIntegrator (1,"Integrator",Logger::BLUE);
void GridLogConfigure(std::vector<std::string> &logstreams)
{
@ -20,6 +60,7 @@ void GridLogConfigure(std::vector<std::string> &logstreams)
GridLogIterative.Active(0);
GridLogDebug.Active(0);
GridLogPerformance.Active(0);
GridLogIntegrator.Active(0);
for(int i=0;i<logstreams.size();i++){
if ( logstreams[i]== std::string("Error") ) GridLogError.Active(1);
@ -28,6 +69,7 @@ void GridLogConfigure(std::vector<std::string> &logstreams)
if ( logstreams[i]== std::string("Iterative") ) GridLogIterative.Active(1);
if ( logstreams[i]== std::string("Debug") ) GridLogDebug.Active(1);
if ( logstreams[i]== std::string("Performance") ) GridLogPerformance.Active(1);
if ( logstreams[i]== std::string("Integrator" ) ) GridLogIntegrator.Active(1);
}
}
@ -52,11 +94,6 @@ void Grid_unquiesce_nodes(void)
#endif
}
std::ostream& operator<< (std::ostream& stream, const GridTime& time)
{
stream << time.count()<<" ms";
return stream;
}
}

55
lib/Log.h
View File

@ -1,21 +1,59 @@
/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: ./lib/Log.h
Copyright (C) 2015
Author: Antonin Portelli <antonin.portelli@me.com>
Author: Azusa Yamaguchi <ayamaguc@staffmail.ed.ac.uk>
Author: Peter Boyle <paboyle@ph.ed.ac.uk>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#ifndef GRID_LOG_H
#define GRID_LOG_H
namespace Grid {
// Dress the output; use std::chrono for time stamping via the StopWatch class
std::ostream& operator<< (std::ostream& stream, const GridTime& time);
class Logger {
protected:
int active;
std::string name, topName;
std::string name, topName, COLOUR;
public:
static GridStopWatch StopWatch;
static std::ostream devnull;
static std::string BLACK;
static std::string RED ;
static std::string GREEN;
static std::string YELLOW;
static std::string BLUE ;
static std::string PURPLE;
static std::string CYAN ;
static std::string WHITE ;
static std::string NORMAL;
Logger(std::string topNm, int on, std::string nm)
: active(on), name(nm), topName(topNm) {};
Logger(std::string topNm, int on, std::string nm,std::string col)
: active(on), name(nm), topName(topNm), COLOUR(col) {};
void Active(int on) {active = on;};
int isActive(void) {return active;};
@ -25,9 +63,9 @@ public:
StopWatch.Stop();
GridTime now = StopWatch.Elapsed();
StopWatch.Start();
stream << std::setw(8) << std::left << log.topName << " : ";
stream << std::setw(12) << std::left << log.name << " : ";
stream << now << " : ";
stream << BLACK<< log.topName << BLACK<< " : ";
stream << log.COLOUR <<std::setw(10) << std::left << log.name << BLACK << " : ";
stream << YELLOW<< now <<BLACK << " : " << log.COLOUR;
return stream;
} else {
return devnull;
@ -38,7 +76,7 @@ public:
class GridLogger: public Logger {
public:
GridLogger(int on, std::string nm): Logger("Grid", on, nm){};
GridLogger(int on, std::string nm, std::string col = Logger::BLACK): Logger("Grid", on, nm, col){};
};
void GridLogConfigure(std::vector<std::string> &logstreams);
@ -49,6 +87,7 @@ extern GridLogger GridLogMessage;
extern GridLogger GridLogDebug ;
extern GridLogger GridLogPerformance;
extern GridLogger GridLogIterative ;
extern GridLogger GridLogIntegrator ;
}
#endif

4
lib/Make.inc
View File

@ -1,4 +1,4 @@
HFILES=./algorithms/approx/bigfloat.h ./algorithms/approx/bigfloat_double.h ./algorithms/approx/Chebyshev.h ./algorithms/approx/MultiShiftFunction.h ./algorithms/approx/Remez.h ./algorithms/approx/Zolotarev.h ./algorithms/CoarsenedMatrix.h ./algorithms/iterative/AdefGeneric.h ./algorithms/iterative/ConjugateGradient.h ./algorithms/iterative/ConjugateGradientMultiShift.h ./algorithms/iterative/ConjugateResidual.h ./algorithms/iterative/DenseMatrix.h ./algorithms/iterative/EigenSort.h ./algorithms/iterative/Francis.h ./algorithms/iterative/Householder.h ./algorithms/iterative/ImplicitlyRestartedLanczos.h ./algorithms/iterative/Matrix.h ./algorithms/iterative/MatrixUtils.h ./algorithms/iterative/NormalEquations.h ./algorithms/iterative/PrecConjugateResidual.h ./algorithms/iterative/PrecGeneralisedConjugateResidual.h ./algorithms/iterative/SchurRedBlack.h ./algorithms/LinearOperator.h ./algorithms/Preconditioner.h ./algorithms/SparseMatrix.h ./Algorithms.h ./AlignedAllocator.h ./cartesian/Cartesian_base.h ./cartesian/Cartesian_full.h ./cartesian/Cartesian_red_black.h ./Cartesian.h ./communicator/Communicator_base.h ./Communicator.h ./cshift/Cshift_common.h ./cshift/Cshift_mpi.h ./cshift/Cshift_none.h ./Cshift.h ./Grid.h ./Init.h ./lattice/Lattice_arith.h ./lattice/Lattice_base.h ./lattice/Lattice_comparison.h ./lattice/Lattice_comparison_utils.h ./lattice/Lattice_conformable.h ./lattice/Lattice_coordinate.h ./lattice/Lattice_ET.h ./lattice/Lattice_local.h ./lattice/Lattice_overload.h ./lattice/Lattice_peekpoke.h ./lattice/Lattice_reality.h ./lattice/Lattice_reduction.h ./lattice/Lattice_rng.h ./lattice/Lattice_trace.h ./lattice/Lattice_transfer.h ./lattice/Lattice_transpose.h ./lattice/Lattice_unary.h ./lattice/Lattice_where.h ./Lattice.h ./Log.h ./Old/Tensor_peek.h ./Old/Tensor_poke.h ./parallelIO/BinaryIO.h ./parallelIO/NerscIO.h ./PerfCount.h ./pugixml/pugixml.h ./qcd/action/ActionBase.h ./qcd/action/ActionParams.h ./qcd/action/Actions.h ./qcd/action/fermion/CayleyFermion5D.h ./qcd/action/fermion/ContinuedFractionFermion5D.h ./qcd/action/fermion/DomainWallFermion.h ./qcd/action/fermion/FermionOperator.h ./qcd/action/fermion/FermionOperatorImpl.h ./qcd/action/fermion/g5HermitianLinop.h ./qcd/action/fermion/MobiusFermion.h ./qcd/action/fermion/MobiusZolotarevFermion.h ./qcd/action/fermion/OverlapWilsonCayleyTanhFermion.h ./qcd/action/fermion/OverlapWilsonCayleyZolotarevFermion.h ./qcd/action/fermion/OverlapWilsonContfracTanhFermion.h ./qcd/action/fermion/OverlapWilsonContfracZolotarevFermion.h ./qcd/action/fermion/OverlapWilsonPartialFractionTanhFermion.h ./qcd/action/fermion/OverlapWilsonPartialFractionZolotarevFermion.h ./qcd/action/fermion/PartialFractionFermion5D.h ./qcd/action/fermion/ScaledShamirFermion.h ./qcd/action/fermion/ShamirZolotarevFermion.h ./qcd/action/fermion/WilsonCompressor.h ./qcd/action/fermion/WilsonFermion.h ./qcd/action/fermion/WilsonFermion5D.h ./qcd/action/fermion/WilsonKernels.h ./qcd/action/gauge/WilsonGaugeAction.h ./qcd/action/pseudofermion/EvenOddSchurDifferentiable.h ./qcd/action/pseudofermion/OneFlavourEvenOddRational.h ./qcd/action/pseudofermion/OneFlavourEvenOddRationalRatio.h ./qcd/action/pseudofermion/OneFlavourRational.h ./qcd/action/pseudofermion/OneFlavourRationalRatio.h ./qcd/action/pseudofermion/TwoFlavour.h ./qcd/action/pseudofermion/TwoFlavourEvenOdd.h ./qcd/action/pseudofermion/TwoFlavourEvenOddRatio.h ./qcd/action/pseudofermion/TwoFlavourRatio.h ./qcd/hmc/HMC.h ./qcd/hmc/integrators/Integrator.h ./qcd/hmc/integrators/Integrator_algorithm.h ./qcd/QCD.h ./qcd/spin/Dirac.h ./qcd/spin/TwoSpinor.h ./qcd/utils/CovariantCshift.h ./qcd/utils/LinalgUtils.h ./qcd/utils/SpaceTimeGrid.h ./qcd/utils/SUn.h ./qcd/utils/WilsonLoops.h ./serialisation/BaseIO.h ./serialisation/BinaryIO.h ./serialisation/MacroMagic.h ./serialisation/Serialisation.h ./serialisation/TextIO.h ./serialisation/XmlIO.h ./simd/Avx512Asm.h ./simd/Grid_avx.h ./simd/Grid_avx512.h ./simd/Grid_empty.h ./simd/Grid_imci.h ./simd/Grid_neon.h ./simd/Grid_qpx.h ./simd/Grid_sse4.h ./simd/Grid_vector_types.h ./simd/Grid_vector_unops.h ./Simd.h ./stencil/Lebesgue.h ./Stencil.h ./tensors/Tensor_arith.h ./tensors/Tensor_arith_add.h ./tensors/Tensor_arith_mac.h ./tensors/Tensor_arith_mul.h ./tensors/Tensor_arith_scalar.h ./tensors/Tensor_arith_sub.h ./tensors/Tensor_class.h ./tensors/Tensor_determinant.h ./tensors/Tensor_exp.h ./tensors/Tensor_extract_merge.h ./tensors/Tensor_index.h ./tensors/Tensor_inner.h ./tensors/Tensor_logical.h ./tensors/Tensor_outer.h ./tensors/Tensor_reality.h ./tensors/Tensor_Ta.h ./tensors/Tensor_trace.h ./tensors/Tensor_traits.h ./tensors/Tensor_transpose.h ./tensors/Tensor_unary.h ./Tensors.h ./Threads.h ./Timer.h
HFILES=./algorithms/approx/bigfloat.h ./algorithms/approx/bigfloat_double.h ./algorithms/approx/Chebyshev.h ./algorithms/approx/MultiShiftFunction.h ./algorithms/approx/Remez.h ./algorithms/approx/Zolotarev.h ./algorithms/CoarsenedMatrix.h ./algorithms/iterative/AdefGeneric.h ./algorithms/iterative/ConjugateGradient.h ./algorithms/iterative/ConjugateGradientMultiShift.h ./algorithms/iterative/ConjugateResidual.h ./algorithms/iterative/DenseMatrix.h ./algorithms/iterative/EigenSort.h ./algorithms/iterative/Francis.h ./algorithms/iterative/Householder.h ./algorithms/iterative/ImplicitlyRestartedLanczos.h ./algorithms/iterative/Matrix.h ./algorithms/iterative/MatrixUtils.h ./algorithms/iterative/NormalEquations.h ./algorithms/iterative/PrecConjugateResidual.h ./algorithms/iterative/PrecGeneralisedConjugateResidual.h ./algorithms/iterative/SchurRedBlack.h ./algorithms/LinearOperator.h ./algorithms/Preconditioner.h ./algorithms/SparseMatrix.h ./Algorithms.h ./AlignedAllocator.h ./cartesian/Cartesian_base.h ./cartesian/Cartesian_full.h ./cartesian/Cartesian_red_black.h ./Cartesian.h ./communicator/Communicator_base.h ./Communicator.h ./cshift/Cshift_common.h ./cshift/Cshift_mpi.h ./cshift/Cshift_none.h ./Cshift.h ./Grid.h ./Init.h ./lattice/Lattice_arith.h ./lattice/Lattice_base.h ./lattice/Lattice_comparison.h ./lattice/Lattice_comparison_utils.h ./lattice/Lattice_conformable.h ./lattice/Lattice_coordinate.h ./lattice/Lattice_ET.h ./lattice/Lattice_local.h ./lattice/Lattice_overload.h ./lattice/Lattice_peekpoke.h ./lattice/Lattice_reality.h ./lattice/Lattice_reduction.h ./lattice/Lattice_rng.h ./lattice/Lattice_trace.h ./lattice/Lattice_transfer.h ./lattice/Lattice_transpose.h ./lattice/Lattice_unary.h ./lattice/Lattice_where.h ./Lattice.h ./Log.h ./Old/Tensor_peek.h ./Old/Tensor_poke.h ./parallelIO/BinaryIO.h ./parallelIO/NerscIO.h ./PerfCount.h ./pugixml/pugixml.h ./qcd/action/ActionBase.h ./qcd/action/ActionParams.h ./qcd/action/Actions.h ./qcd/action/fermion/CayleyFermion5D.h ./qcd/action/fermion/ContinuedFractionFermion5D.h ./qcd/action/fermion/DomainWallFermion.h ./qcd/action/fermion/FermionOperator.h ./qcd/action/fermion/FermionOperatorImpl.h ./qcd/action/fermion/g5HermitianLinop.h ./qcd/action/fermion/MobiusFermion.h ./qcd/action/fermion/MobiusZolotarevFermion.h ./qcd/action/fermion/OverlapWilsonCayleyTanhFermion.h ./qcd/action/fermion/OverlapWilsonCayleyZolotarevFermion.h ./qcd/action/fermion/OverlapWilsonContfracTanhFermion.h ./qcd/action/fermion/OverlapWilsonContfracZolotarevFermion.h ./qcd/action/fermion/OverlapWilsonPartialFractionTanhFermion.h ./qcd/action/fermion/OverlapWilsonPartialFractionZolotarevFermion.h ./qcd/action/fermion/PartialFractionFermion5D.h ./qcd/action/fermion/ScaledShamirFermion.h ./qcd/action/fermion/ShamirZolotarevFermion.h ./qcd/action/fermion/WilsonCompressor.h ./qcd/action/fermion/WilsonFermion.h ./qcd/action/fermion/WilsonFermion5D.h ./qcd/action/fermion/WilsonKernels.h ./qcd/action/fermion/WilsonTMFermion.h ./qcd/action/gauge/GaugeImpl.h ./qcd/action/gauge/PlaqPlusRectangleAction.h ./qcd/action/gauge/WilsonGaugeAction.h ./qcd/action/pseudofermion/EvenOddSchurDifferentiable.h ./qcd/action/pseudofermion/OneFlavourEvenOddRational.h ./qcd/action/pseudofermion/OneFlavourEvenOddRationalRatio.h ./qcd/action/pseudofermion/OneFlavourRational.h ./qcd/action/pseudofermion/OneFlavourRationalRatio.h ./qcd/action/pseudofermion/TwoFlavour.h ./qcd/action/pseudofermion/TwoFlavourEvenOdd.h ./qcd/action/pseudofermion/TwoFlavourEvenOddRatio.h ./qcd/action/pseudofermion/TwoFlavourRatio.h ./qcd/hmc/HMC.h ./qcd/hmc/HmcRunner.h ./qcd/hmc/integrators/Integrator.h ./qcd/hmc/integrators/Integrator_algorithm.h ./qcd/hmc/NerscCheckpointer.h ./qcd/QCD.h ./qcd/spin/Dirac.h ./qcd/spin/TwoSpinor.h ./qcd/utils/CovariantCshift.h ./qcd/utils/LinalgUtils.h ./qcd/utils/SpaceTimeGrid.h ./qcd/utils/SUn.h ./qcd/utils/WilsonLoops.h ./serialisation/BaseIO.h ./serialisation/BinaryIO.h ./serialisation/MacroMagic.h ./serialisation/Serialisation.h ./serialisation/TextIO.h ./serialisation/XmlIO.h ./simd/Avx512Asm.h ./simd/Grid_avx.h ./simd/Grid_avx512.h ./simd/Grid_empty.h ./simd/Grid_imci.h ./simd/Grid_neon.h ./simd/Grid_qpx.h ./simd/Grid_sse4.h ./simd/Grid_vector_types.h ./simd/Grid_vector_unops.h ./Simd.h ./stencil/Lebesgue.h ./Stencil.h ./tensors/Tensor_arith.h ./tensors/Tensor_arith_add.h ./tensors/Tensor_arith_mac.h ./tensors/Tensor_arith_mul.h ./tensors/Tensor_arith_scalar.h ./tensors/Tensor_arith_sub.h ./tensors/Tensor_class.h ./tensors/Tensor_determinant.h ./tensors/Tensor_exp.h ./tensors/Tensor_extract_merge.h ./tensors/Tensor_index.h ./tensors/Tensor_inner.h ./tensors/Tensor_logical.h ./tensors/Tensor_outer.h ./tensors/Tensor_reality.h ./tensors/Tensor_Ta.h ./tensors/Tensor_trace.h ./tensors/Tensor_traits.h ./tensors/Tensor_transpose.h ./tensors/Tensor_unary.h ./Tensors.h ./Threads.h ./Timer.h
CCFILES=./algorithms/approx/MultiShiftFunction.cc ./algorithms/approx/Remez.cc ./algorithms/approx/Zolotarev.cc ./Init.cc ./Log.cc ./PerfCount.cc ./pugixml/pugixml.cc ./qcd/action/fermion/CayleyFermion5D.cc ./qcd/action/fermion/ContinuedFractionFermion5D.cc ./qcd/action/fermion/PartialFractionFermion5D.cc ./qcd/action/fermion/WilsonFermion.cc ./qcd/action/fermion/WilsonFermion5D.cc ./qcd/action/fermion/WilsonKernels.cc ./qcd/action/fermion/WilsonKernelsAsm.cc ./qcd/action/fermion/WilsonKernelsHand.cc ./qcd/hmc/HMC.cc ./qcd/spin/Dirac.cc ./qcd/utils/SpaceTimeGrid.cc ./serialisation/BinaryIO.cc ./serialisation/TextIO.cc ./serialisation/XmlIO.cc ./stencil/Lebesgue.cc ./stencil/Stencil_common.cc
CCFILES=./algorithms/approx/MultiShiftFunction.cc ./algorithms/approx/Remez.cc ./algorithms/approx/Zolotarev.cc ./Init.cc ./Log.cc ./PerfCount.cc ./pugixml/pugixml.cc ./qcd/action/fermion/CayleyFermion5D.cc ./qcd/action/fermion/ContinuedFractionFermion5D.cc ./qcd/action/fermion/PartialFractionFermion5D.cc ./qcd/action/fermion/WilsonFermion.cc ./qcd/action/fermion/WilsonFermion5D.cc ./qcd/action/fermion/WilsonKernels.cc ./qcd/action/fermion/WilsonKernelsAsm.cc ./qcd/action/fermion/WilsonKernelsHand.cc ./qcd/action/fermion/WilsonTMFermion.cc ./qcd/hmc/HMC.cc ./qcd/spin/Dirac.cc ./qcd/utils/SpaceTimeGrid.cc ./serialisation/BinaryIO.cc ./serialisation/TextIO.cc ./serialisation/XmlIO.cc ./stencil/Lebesgue.cc ./stencil/Stencil_common.cc

27
lib/Old/Tensor_peek.h
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@ -1,3 +1,30 @@
/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: ./lib/Old/Tensor_peek.h
Copyright (C) 2015
Author: Peter Boyle <paboyle@ph.ed.ac.uk>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#ifndef GRID_MATH_PEEK_H
#define GRID_MATH_PEEK_H
namespace Grid {

27
lib/Old/Tensor_poke.h
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@ -1,3 +1,30 @@
/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: ./lib/Old/Tensor_poke.h
Copyright (C) 2015
Author: Peter Boyle <paboyle@ph.ed.ac.uk>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#ifndef GRID_MATH_POKE_H
#define GRID_MATH_POKE_H
namespace Grid {

27
lib/PerfCount.cc
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@ -1,3 +1,30 @@
/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: ./lib/PerfCount.cc
Copyright (C) 2015
Author: paboyle <paboyle@ph.ed.ac.uk>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#include <Grid.h>
#include <PerfCount.h>

29
lib/PerfCount.h
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@ -1,3 +1,32 @@
/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: ./lib/PerfCount.h
Copyright (C) 2015
Author: Azusa Yamaguchi <ayamaguc@staffmail.ed.ac.uk>
Author: Peter Boyle <peterboyle@MacBook-Pro.local>
Author: paboyle <paboyle@ph.ed.ac.uk>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#ifndef GRID_PERFCOUNT_H
#define GRID_PERFCOUNT_H

29
lib/Simd.h
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@ -1,3 +1,32 @@
/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: ./lib/Simd.h
Copyright (C) 2015
Author: Peter Boyle <paboyle@ph.ed.ac.uk>
Author: neo <cossu@post.kek.jp>
Author: paboyle <paboyle@ph.ed.ac.uk>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#ifndef GRID_SIMD_H
#define GRID_SIMD_H

106
lib/Stencil.h
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@ -1,6 +1,37 @@
/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: ./lib/Stencil.h
Copyright (C) 2015
Author: Peter Boyle <paboyle@ph.ed.ac.uk>
Author: Peter Boyle <peterboyle@Peters-MacBook-Pro-2.local>
Author: paboyle <paboyle@ph.ed.ac.uk>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#ifndef GRID_STENCIL_H
#define GRID_STENCIL_H
#include <thread>
#include <stencil/Lebesgue.h> // subdir aggregate
//////////////////////////////////////////////////////////////////////////////////////////
@ -60,7 +91,8 @@ namespace Grid {
int _checkerboard;
int _npoints; // Move to template param?
GridBase * _grid;
// npoints of these
std::vector<int> _directions;
std::vector<int> _distances;
@ -163,18 +195,19 @@ namespace Grid {
// So tables are the same whether comm_dim or splice_dim
sshift[0] = _grid->CheckerBoardShiftForCB(_checkerboard,dimension,shift,Even);
sshift[1] = _grid->CheckerBoardShiftForCB(_checkerboard,dimension,shift,Odd);
if ( sshift[0] == sshift[1] ) {
Comms(point,dimension,shift,0x3);
// std::cout<<"Comms 0x3"<<std::endl;
Comms(point,dimension,shift,0x3);
} else {
// std::cout<<"Comms 0x1 ; 0x2"<<std::endl;
Comms(point,dimension,shift,0x1);// if checkerboard is unfavourable take two passes
Comms(point,dimension,shift,0x2);// both with block stride loop iteration
// std::cout<<"Comms 0x1 ; 0x2"<<std::endl;
}
}
// for(int ss=0;ss<osites;ss++){
// std::cout << "point["<<i<<"] "<<ss<<"-> o"<<_entries[i][ss]._offset<<"; l"<<
// _entries[i][ss]._is_local<<"; p"<<_entries[i][ss]._permute<<std::endl;
// std::cout << "point["<<i<<"] "<<ss<<"-> o"<<_entries[i][ss]._offset<<"; l"<<
// _entries[i][ss]._is_local<<"; p"<<_entries[i][ss]._permute<<std::endl;
// }
}
}
@ -210,7 +243,6 @@ namespace Grid {
if ( (shiftpm== 1) && (sx<x) ) {
wraparound = 1;
}
int permute_slice=0;
if(permute_dim){
@ -228,6 +260,7 @@ namespace Grid {
void Comms (int point,int dimension,int shiftpm,int cbmask)
{
GridBase *grid=_grid;
const int Nsimd = grid->Nsimd();
int fd = _grid->_fdimensions[dimension];
int ld = _grid->_ldimensions[dimension];
@ -241,8 +274,9 @@ namespace Grid {
int shift = (shiftpm + fd) %fd;
assert(shift>=0);
assert(shift<fd);
int buffer_size = _grid->_slice_nblock[dimension]*_grid->_slice_block[dimension];
int buffer_size = _grid->_slice_nblock[dimension]*_grid->_slice_block[dimension]; // done in reduced dims, so SIMD factored
// std::cout << " dim " <<dimension<<" buffersize "<<buffer_size<<std::endl;
_comm_buf_size[point] = buffer_size; // Size of _one_ plane. Multiple planes may be gathered and
// send to one or more remote nodes.
@ -252,11 +286,40 @@ namespace Grid {
for(int x=0;x<rd;x++){
int sx = (x+sshift)%rd;
int comm_proc = ((x+sshift)/rd)%pd;
int offnode = (comm_proc!= 0);
// std::cout << "Stencil shift "<<shift<<" sshift "<<sshift<<" fd "<<fd<<" rd " <<rd<<" offnode "<<offnode<<" sx "<<sx<<std::endl;
int permute_type=grid->PermuteType(dimension);
int sx = (x+sshift)%rd;
int offnode = 0;
if ( simd_layout > 1 ) {
for(int i=0;i<Nsimd;i++){
int inner_bit = (Nsimd>>(permute_type+1));
int ic= (i&inner_bit)? 1:0;
int my_coor = rd*ic + x;
int nbr_coor = my_coor+sshift;
int nbr_proc = ((nbr_coor)/ld) % pd;// relative shift in processors
if ( nbr_proc ) {
offnode =1;
}
}
} else {
int comm_proc = ((x+sshift)/rd)%pd;
offnode = (comm_proc!= 0);
// std::cout << "Stencil x "<<x<<" shift "<<shift<<" sshift "<<sshift<<" fd "<<fd<<" rd " <<rd<<" offnode "<<offnode<<" sx "<<sx<< " comm_proc "<<comm_proc<<" pd "<< pd <<std::endl;
}
// Stencil x 1 shift 3 sshift 3 fd 8 rd 2 offnode 0 sx 0 comm_proc 0 pd 2
// x+sshift = 4
// x+sshift/2 = 2
// 2%2 == 0
// Problem: sshift is wrong in "rd" for SIMD directions. The complex logic in Cshift_mpi is needed.
int wraparound=0;
if ( (shiftpm==-1) && (sx>x) && (grid->_processor_coor[dimension]==0) ) {
wraparound = 1;
@ -282,6 +345,7 @@ namespace Grid {
int unified_buffer_offset = _unified_buffer_size;
_unified_buffer_size += words;
// std::cout<< "Comms dim "<<dimension<<" offset "<<unified_buffer_offset<<" size "<<" " << _unified_buffer_size<<std::endl;
ScatterPlane(point,dimension,x,cbmask,unified_buffer_offset,wraparound); // permute/extract/merge is done in comms phase
}
@ -393,7 +457,17 @@ namespace Grid {
// Could allow a functional munging of the halo to another type during the comms.
// this could implement the 16bit/32bit/64bit compression.
void HaloExchange(const Lattice<vobj> &source,std::vector<cobj,alignedAllocator<cobj> > &u_comm_buf,compressor &compress)
void HaloExchange(const Lattice<vobj> &source,std::vector<cobj,alignedAllocator<cobj> > &u_comm_buf,compressor &compress)
{
std::thread thr = HaloExchangeBegin(source,u_comm_buf,compress);
thr.join();
}
std::thread HaloExchangeBegin(const Lattice<vobj> &source,std::vector<cobj,alignedAllocator<cobj> > & u_comm_buf,compressor &compress) {
return std::thread([&] { this->HaloExchangeBlocking(source,u_comm_buf,compress); });
}
void HaloExchangeBlocking(const Lattice<vobj> &source,std::vector<cobj,alignedAllocator<cobj> > &u_comm_buf,compressor &compress)
{
// conformable(source._grid,_grid);
assert(source._grid==_grid);
@ -440,7 +514,7 @@ namespace Grid {
nosplicetime+=usecond();
}
} else {
std::cout << "dim "<<dimension<<"cb "<<_checkerboard<<"shift "<<shift<<" sshift " << sshift[0]<<" "<<sshift[1]<<std::endl;
// std::cout << "dim "<<dimension<<"cb "<<_checkerboard<<"shift "<<shift<<" sshift " << sshift[0]<<" "<<sshift[1]<<std::endl;
if(splice_dim){
splicetime-=usecond();
GatherStartCommsSimd(source,dimension,shift,0x1,u_comm_buf,u_comm_offset,compress);// if checkerboard is unfavourable take two passes
@ -594,7 +668,6 @@ namespace Grid {
gathermtime+=usecond();
for(int i=0;i<Nsimd;i++){
int inner_bit = (Nsimd>>(permute_type+1));
int ic= (i&inner_bit)? 1:0;
@ -633,10 +706,11 @@ namespace Grid {
}
}
// Here we don't want to scatter, just place into a buffer.
// std::cout << " CommsSimd ["<<dimension<<"] offset "<<u_comm_offset<<" buffsize "<<buffer_size <<" unified buffer size "<<_unified_buffer_size<<std::endl;
mergetime-=usecond();
PARALLEL_FOR_LOOP
for(int i=0;i<buffer_size;i++){
// std::cout<<"buffer loop " << i<<" "<<u_comm_offset+i<<" / "<<_unified_buffer_size<<std::endl;
// assert(u_comm_offset+i<_unified_buffer_size);
merge(u_comm_buf[u_comm_offset+i],rpointers,i);
}

29
lib/Tensors.h
View File

@ -1,3 +1,32 @@
/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: ./lib/Tensors.h
Copyright (C) 2015
Author: Azusa Yamaguchi <ayamaguc@staffmail.ed.ac.uk>
Author: Peter Boyle <paboyle@ph.ed.ac.uk>
Author: neo <cossu@post.kek.jp>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#ifndef GRID_MATH_H
#define GRID_MATH_H

28
lib/Threads.h
View File

@ -1,3 +1,31 @@
/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: ./lib/Threads.h
Copyright (C) 2015
Author: Peter Boyle <paboyle@ph.ed.ac.uk>
Author: paboyle <paboyle@ph.ed.ac.uk>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#ifndef GRID_THREADS_H
#define GRID_THREADS_H

33
lib/Timer.h
View File

@ -1,3 +1,31 @@
/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: ./lib/Timer.h
Copyright (C) 2015
Author: Azusa Yamaguchi <ayamaguc@staffmail.ed.ac.uk>
Author: Peter Boyle <paboyle@ph.ed.ac.uk>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#ifndef GRID_TIME_H
#define GRID_TIME_H
@ -17,6 +45,11 @@ typedef std::chrono::system_clock GridClock;
typedef std::chrono::time_point<GridClock> GridTimePoint;
typedef std::chrono::milliseconds GridTime;
inline std::ostream& operator<< (std::ostream & stream, const std::chrono::milliseconds & time)
{
stream << time.count()<<" ms";
return stream;
}
class GridStopWatch {
private:

30
lib/algorithms/CoarsenedMatrix.h
View File

@ -1,3 +1,33 @@
/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: ./lib/algorithms/CoarsenedMatrix.h
Copyright (C) 2015
Author: Azusa Yamaguchi <ayamaguc@staffmail.ed.ac.uk>
Author: Peter Boyle <paboyle@ph.ed.ac.uk>
Author: Peter Boyle <peterboyle@Peters-MacBook-Pro-2.local>
Author: paboyle <paboyle@ph.ed.ac.uk>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#ifndef GRID_ALGORITHM_COARSENED_MATRIX_H
#define GRID_ALGORITHM_COARSENED_MATRIX_H

28
lib/algorithms/LinearOperator.h
View File

@ -1,3 +1,31 @@
/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: ./lib/algorithms/LinearOperator.h
Copyright (C) 2015
Author: Azusa Yamaguchi <ayamaguc@staffmail.ed.ac.uk>
Author: Peter Boyle <paboyle@ph.ed.ac.uk>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#ifndef GRID_ALGORITHM_LINEAR_OP_H
#define GRID_ALGORITHM_LINEAR_OP_H

27
lib/algorithms/Preconditioner.h
View File

@ -1,3 +1,30 @@
/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: ./lib/algorithms/Preconditioner.h
Copyright (C) 2015
Author: Azusa Yamaguchi <ayamaguc@staffmail.ed.ac.uk>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#ifndef GRID_PRECONDITIONER_H
#define GRID_PRECONDITIONER_H

27
lib/algorithms/SparseMatrix.h
View File

@ -1,3 +1,30 @@
/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: ./lib/algorithms/SparseMatrix.h
Copyright (C) 2015
Author: Peter Boyle <paboyle@ph.ed.ac.uk>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#ifndef GRID_ALGORITHM_SPARSE_MATRIX_H
#define GRID_ALGORITHM_SPARSE_MATRIX_H

35
lib/algorithms/approx/Chebyshev.h
View File

@ -1,3 +1,31 @@
/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: ./lib/algorithms/approx/Chebyshev.h
Copyright (C) 2015
Author: Peter Boyle <paboyle@ph.ed.ac.uk>
Author: paboyle <paboyle@ph.ed.ac.uk>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#ifndef GRID_CHEBYSHEV_H
#define GRID_CHEBYSHEV_H
@ -30,13 +58,14 @@ namespace Grid {
Field Mtmp(in._grid);
AtoN = in;
out = AtoN*Coeffs[0];
// std::cout <<"Poly in " <<norm2(in)<<std::endl;
// std::cout <<"0 " <<norm2(out)<<std::endl;
// std::cout <<"Poly in " <<norm2(in)<<" size "<< Coeffs.size()<<std::endl;
// std::cout <<"Coeffs[0]= "<<Coeffs[0]<< " 0 " <<norm2(out)<<std::endl;
for(int n=1;n<Coeffs.size();n++){
Mtmp = AtoN;
Linop.HermOp(Mtmp,AtoN);
out=out+AtoN*Coeffs[n];
// std::cout << n<<" " <<norm2(out)<<std::endl;
// std::cout <<"Coeffs "<<n<<"= "<< Coeffs[n]<< " 0 " <<std::endl;
// std::cout << n<<" " <<norm2(out)<<std::endl;
}
};
};

27
lib/algorithms/approx/MultiShiftFunction.cc
View File

@ -1,3 +1,30 @@
/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: ./lib/algorithms/approx/MultiShiftFunction.cc
Copyright (C) 2015
Author: Azusa Yamaguchi <ayamaguc@staffmail.ed.ac.uk>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#include <Grid.h>
namespace Grid {

28
lib/algorithms/approx/MultiShiftFunction.h
View File

@ -1,3 +1,31 @@
/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: ./lib/algorithms/approx/MultiShiftFunction.h
Copyright (C) 2015
Author: Azusa Yamaguchi <ayamaguc@staffmail.ed.ac.uk>
Author: Peter Boyle <paboyle@ph.ed.ac.uk>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#ifndef MULTI_SHIFT_FUNCTION
#define MULTI_SHIFT_FUNCTION

27
lib/algorithms/approx/bigfloat_double.h
View File

@ -1,3 +1,30 @@
/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: ./lib/algorithms/approx/bigfloat_double.h
Copyright (C) 2015
Author: Peter Boyle <paboyle@ph.ed.ac.uk>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#include <math.h>
typedef double mfloat;

27
lib/algorithms/iterative/AdefGeneric.h
View File

@ -1,3 +1,30 @@
/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: ./lib/algorithms/iterative/AdefGeneric.h
Copyright (C) 2015
Author: Peter Boyle <paboyle@ph.ed.ac.uk>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#ifndef GRID_ALGORITHMS_ITERATIVE_GENERIC_PCG
#define GRID_ALGORITHMS_ITERATIVE_GENERIC_PCG

55
lib/algorithms/iterative/ConjugateGradient.h
View File

@ -1,3 +1,32 @@
/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: ./lib/algorithms/iterative/ConjugateGradient.h
Copyright (C) 2015
Author: Azusa Yamaguchi <ayamaguc@staffmail.ed.ac.uk>
Author: Peter Boyle <paboyle@ph.ed.ac.uk>
Author: paboyle <paboyle@ph.ed.ac.uk>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#ifndef GRID_CONJUGATE_GRADIENT_H
#define GRID_CONJUGATE_GRADIENT_H
@ -30,7 +59,8 @@ public:
//Initial residual computation & set up
RealD guess = norm2(psi);
assert(std::isnan(guess)==0);
Linop.HermOpAndNorm(psi,mmp,d,b);
r= src-mmp;
@ -55,14 +85,22 @@ public:
}
std::cout<<GridLogIterative << std::setprecision(4)<< "ConjugateGradient: k=0 residual "<<cp<<" rsq"<<rsq<<std::endl;
GridStopWatch LinalgTimer;
GridStopWatch MatrixTimer;
GridStopWatch SolverTimer;
SolverTimer.Start();
int k;
for (k=1;k<=MaxIterations;k++){
c=cp;
Linop.HermOpAndNorm(p,mmp,d,qq);
MatrixTimer.Start();
Linop.HermOpAndNorm(p,mmp,d,qq);
MatrixTimer.Stop();
LinalgTimer.Start();
RealD qqck = norm2(mmp);
ComplexD dck = innerProduct(p,mmp);
@ -76,11 +114,13 @@ public:
psi= a*p+psi;
p = p*b+r;
LinalgTimer.Stop();
std::cout<<GridLogIterative<<"ConjugateGradient: Iteration " <<k<<" residual "<<cp<< " target"<< rsq<<std::endl;
// Stopping condition
if ( cp <= rsq ) {
SolverTimer.Stop();
Linop.HermOpAndNorm(psi,mmp,d,qq);
p=mmp-src;
@ -93,7 +133,12 @@ public:
std::cout<<GridLogMessage<<"ConjugateGradient: Converged on iteration " <<k
<<" computed residual "<<sqrt(cp/ssq)
<<" true residual "<<true_residual
<<" target "<<Tolerance<<std::endl;
<<" target "<<Tolerance;
std::cout<<" Time elapsed: Total "<< SolverTimer.Elapsed() << " Matrix "<<MatrixTimer.Elapsed() << " Linalg "<<LinalgTimer.Elapsed();
std::cout<<std::endl;
assert(true_residual/Tolerance < 1000.0);
return;
}
}

28
lib/algorithms/iterative/ConjugateGradientMultiShift.h
View File

@ -1,3 +1,31 @@
/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: ./lib/algorithms/iterative/ConjugateGradientMultiShift.h
Copyright (C) 2015
Author: Azusa Yamaguchi <ayamaguc@staffmail.ed.ac.uk>
Author: Peter Boyle <paboyle@ph.ed.ac.uk>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#ifndef GRID_CONJUGATE_MULTI_SHIFT_GRADIENT_H
#define GRID_CONJUGATE_MULTI_SHIFT_GRADIENT_H

28
lib/algorithms/iterative/ConjugateResidual.h
View File

@ -1,3 +1,31 @@
/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: ./lib/algorithms/iterative/ConjugateResidual.h
Copyright (C) 2015
Author: Azusa Yamaguchi <ayamaguc@staffmail.ed.ac.uk>
Author: Peter Boyle <paboyle@ph.ed.ac.uk>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#ifndef GRID_CONJUGATE_RESIDUAL_H
#define GRID_CONJUGATE_RESIDUAL_H

28
lib/algorithms/iterative/DenseMatrix.h
View File

@ -1,3 +1,31 @@
/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: ./lib/algorithms/iterative/DenseMatrix.h
Copyright (C) 2015
Author: Peter Boyle <paboyle@ph.ed.ac.uk>
Author: paboyle <paboyle@ph.ed.ac.uk>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#ifndef GRID_DENSE_MATRIX_H
#define GRID_DENSE_MATRIX_H

27
lib/algorithms/iterative/EigenSort.h
View File

@ -1,3 +1,30 @@
/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: ./lib/algorithms/iterative/EigenSort.h
Copyright (C) 2015
Author: Peter Boyle <paboyle@ph.ed.ac.uk>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#ifndef GRID_EIGENSORT_H
#define GRID_EIGENSORT_H

27
lib/algorithms/iterative/Francis.h
View File

@ -1,3 +1,30 @@
/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: ./lib/algorithms/iterative/Francis.h
Copyright (C) 2015
Author: Peter Boyle <paboyle@ph.ed.ac.uk>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#ifndef FRANCIS_H
#define FRANCIS_H

27
lib/algorithms/iterative/Householder.h
View File

@ -1,3 +1,30 @@
/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: ./lib/algorithms/iterative/Householder.h
Copyright (C) 2015
Author: Peter Boyle <paboyle@ph.ed.ac.uk>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#ifndef HOUSEHOLDER_H
#define HOUSEHOLDER_H

157
lib/algorithms/iterative/ImplicitlyRestartedLanczos.h
View File

@ -1,6 +1,36 @@
/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: ./lib/algorithms/iterative/ImplicitlyRestartedLanczos.h
Copyright (C) 2015
Author: Peter Boyle <paboyle@ph.ed.ac.uk>
Author: paboyle <paboyle@ph.ed.ac.uk>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#ifndef GRID_IRL_H
#define GRID_IRL_H
#include <string.h> //memset
#include <lapacke.h> //memset
#include <algorithms/iterative/DenseMatrix.h>
#include <algorithms/iterative/EigenSort.h>
@ -21,6 +51,7 @@ public:
int Niter;
int converged;
int Nstop; // Number of evecs checked for convergence
int Nk; // Number of converged sought
int Np; // Np -- Number of spare vecs in kryloc space
int Nm; // Nm -- total number of vectors
@ -29,6 +60,8 @@ public:
SortEigen<Field> _sort;
GridCartesian &_fgrid;
LinearOperatorBase<Field> &_Linop;
OperatorFunction<Field> &_poly;
@ -39,14 +72,17 @@ public:
void init(void){};
void Abort(int ff, DenseVector<RealD> &evals, DenseVector<DenseVector<RealD> > &evecs);
ImplicitlyRestartedLanczos(LinearOperatorBase<Field> &Linop, // op
ImplicitlyRestartedLanczos(GridCartesian &fgrid, LinearOperatorBase<Field> &Linop, // op
OperatorFunction<Field> & poly, // polynmial
int _Nstop, // sought vecs
int _Nk, // sought vecs
int _Nm, // spare vecs
RealD _eresid, // resid in lmdue deficit
int _Niter) : // Max iterations
_fgrid(fgrid),
_Linop(Linop),
_poly(poly),
Nstop(_Nstop),
Nk(_Nk),
Nm(_Nm),
eresid(_eresid),
@ -114,10 +150,11 @@ public:
RealD beta = normalise(w); // 6. βk+1 := ∥wk∥2. If βk+1 = 0 then Stop
// 7. vk+1 := wk/βk+1
// std::cout << "alpha = " << zalph << " beta "<<beta<<std::endl;
const RealD tiny = 1.0e-20;
if ( beta < tiny ) {
std::cout << " beta is tiny "<<beta<<std::endl;
}
}
lmd[k] = alph;
lme[k] = beta;
@ -191,12 +228,113 @@ public:
}
}
//int lapackcj_Wilkinson(Matrix<T> &AH, vector<T> &tevals, vector<vector<T> > &tevecs, double small) {
void diagonalize_lapack(DenseVector<RealD>& lmd,
DenseVector<RealD>& lme,
int Nm2,
int Nm,
DenseVector<RealD>& Qt){
const int size = Nm;
// tevals.resize(size);
// tevecs.resize(size);
int NN = Nm;
double evals_tmp[NN];
double evec_tmp[NN][NN];
memset(evec_tmp[0],0,sizeof(double)*NN*NN);
double AA[NN][NN];
double DD[NN];
double EE[NN];
memset(AA, 0, sizeof(double)*NN*NN);
// memset(ZZ, 0, sizeof(double)*NN*NN);
for (int i = 0; i< NN; i++)
for (int j = i - 1; j <= i + 1; j++)
if ( j < NN && j >= 0 ) {
// AA[i][j] = AH(i,j);
if (i==j) DD[i] = lmd[i];
if (i==j) evals_tmp[i] = lmd[i];
if (j==(i-1)) EE[j] = lme[j];
// if (i<20 && j<20)
// std:: cout << "AA["<<i<<"]["<<j<<"]="<<AA[i][j]<<endl;
}
int evals_found;
int lwork = ( (18*NN) > (1+4*NN+NN*NN)? (18*NN):(1+4*NN+NN*NN)) ;
int liwork = 3+NN*10 ;
int iwork[liwork];
double work[lwork];
int isuppz[2*NN];
char jobz = 'V'; // calculate evals & evecs
char range = 'I'; // calculate all evals
// char range = 'A'; // calculate all evals
char uplo = 'U'; // refer to upper half of original matrix
char compz = 'I'; // Compute eigenvectors of tridiagonal matrix
int ifail[NN];
int info;
// int total = QMP_get_number_of_nodes();
// int node = QMP_get_node_number();
int total = _fgrid._Nprocessors;
int node = _fgrid._processor;
int interval = (NN/total)+1;
double vl = 0.0, vu = 0.0;
int il = interval*node+1 , iu = interval*(node+1);
if (iu > NN) iu=NN;
double tol = 0.0;
if (1) {
memset(evals_tmp,0,sizeof(double)*NN);
if ( il <= NN){
printf("total=%d node=%d il=%d iu=%d\n",total,node,il,iu);
LAPACK_dstegr(&jobz, &range, &NN,
(double*)DD, (double*)EE,
&vl, &vu, &il, &iu, // these four are ignored if second parameteris 'A'
&tol, // tolerance
&evals_found, evals_tmp, (double*)evec_tmp, &NN,
isuppz,
work, &lwork, iwork, &liwork,
&info);
for (int i = iu-1; i>= il-1; i--){
printf("node=%d evals_found=%d evals_tmp[%d] = %g\n",node,evals_found, i - (il-1),evals_tmp[i - (il-1)]);
evals_tmp[i] = evals_tmp[i - (il-1)];
if (il>1) evals_tmp[i-(il-1)]=0.;
for (int j = 0; j< NN; j++){
evec_tmp[i][j] = evec_tmp[i - (il-1)][j];
if (il>1) evec_tmp[i-(il-1)][j]=0.;
}
}
}
{
// TIMER("QMP_sum_double_array");
// QMP_sum_double_array(evals_tmp,NN);
// QMP_sum_double_array((double *)evec_tmp,NN*NN);
_fgrid.GlobalSumVector(evals_tmp,NN);
_fgrid.GlobalSumVector((double*)evec_tmp,NN*NN);
}
}
for(int i=0;i<NN;i++){
for(int j=0;j<NN;j++)
Qt[i*NN+j]=evec_tmp[i][j];
lmd [i]=evals_tmp[i];
}
}
void diagonalize(DenseVector<RealD>& lmd,
DenseVector<RealD>& lme,
int Nm2,
int Nm,
DenseVector<RealD>& Qt)
{
if(1)
{
DenseVector <RealD> lmd2(Nm);
DenseVector <RealD> lme2(Nm);
for(int k=0; k<Nm; ++k){
lmd2[k] = lmd[k];
lme2[k] = lme[k];
}
return diagonalize_lapack(lmd,lme,Nm2,Nm,Qt);
}
int Niter = 100*Nm;
int kmin = 1;
int kmax = Nk;
@ -328,11 +466,19 @@ until convergence
// (uniform vector) Why not src??
// evec[0] = 1.0;
evec[0] = src;
std:: cout <<"norm2(src)= " << norm2(src) << std::endl;
normalise(evec[0]);
std:: cout <<"norm2(evec[0])= " << norm2(evec[0]) << std::endl;
// Initial Nk steps
for(int k=0; k<Nk; ++k) step(eval,lme,evec,f,Nm,k);
// std:: cout <<"norm2(evec[1])= " << norm2(evec[1]) << std::endl;
// std:: cout <<"norm2(evec[2])= " << norm2(evec[2]) << std::endl;
RitzMatrix(evec,Nk);
for(int k=0; k<Nk; ++k){
// std:: cout <<"eval " << k << " " <<eval[k] << std::endl;
// std:: cout <<"lme " << k << " " << lme[k] << std::endl;
}
// Restarting loop begins
for(int iter = 0; iter<Niter; ++iter){
@ -361,8 +507,11 @@ until convergence
// Implicitly shifted QR transformations
setUnit_Qt(Nm,Qt);
for(int ip=k2; ip<Nm; ++ip)
for(int ip=k2; ip<Nm; ++ip){
std::cout << "qr_decomp "<< ip << " "<< eval2[ip] << std::endl;
qr_decomp(eval,lme,Nm,Nm,Qt,eval2[ip],k1,Nm);
}
for(int i=0; i<(Nk+1); ++i) B[i] = 0.0;
@ -427,7 +576,7 @@ until convergence
std::cout<<" #modes converged: "<<Nconv<<std::endl;
if( Nconv>=Nk ){
if( Nconv>=Nstop ){
goto converged;
}
} // end of iter loop

27
lib/algorithms/iterative/Matrix.h
View File

@ -1,3 +1,30 @@
/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: ./lib/algorithms/iterative/Matrix.h
Copyright (C) 2015
Author: Peter Boyle <paboyle@ph.ed.ac.uk>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#ifndef MATRIX_H
#define MATRIX_H

27
lib/algorithms/iterative/MatrixUtils.h
View File

@ -1,3 +1,30 @@
/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: ./lib/algorithms/iterative/MatrixUtils.h
Copyright (C) 2015
Author: Peter Boyle <paboyle@ph.ed.ac.uk>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#ifndef GRID_MATRIX_UTILS_H
#define GRID_MATRIX_UTILS_H

27
lib/algorithms/iterative/NormalEquations.h
View File

@ -1,3 +1,30 @@
/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: ./lib/algorithms/iterative/NormalEquations.h
Copyright (C) 2015
Author: Peter Boyle <paboyle@ph.ed.ac.uk>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#ifndef GRID_NORMAL_EQUATIONS_H
#define GRID_NORMAL_EQUATIONS_H

27
lib/algorithms/iterative/PrecConjugateResidual.h
View File

@ -1,3 +1,30 @@
/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: ./lib/algorithms/iterative/PrecConjugateResidual.h
Copyright (C) 2015
Author: Peter Boyle <paboyle@ph.ed.ac.uk>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#ifndef GRID_PREC_CONJUGATE_RESIDUAL_H
#define GRID_PREC_CONJUGATE_RESIDUAL_H

28
lib/algorithms/iterative/PrecGeneralisedConjugateResidual.h
View File

@ -1,3 +1,31 @@
/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: ./lib/algorithms/iterative/PrecGeneralisedConjugateResidual.h
Copyright (C) 2015
Author: Azusa Yamaguchi <ayamaguc@staffmail.ed.ac.uk>
Author: Peter Boyle <paboyle@ph.ed.ac.uk>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#ifndef GRID_PREC_GCR_H
#define GRID_PREC_GCR_H

27
lib/algorithms/iterative/SchurRedBlack.h
View File

@ -1,3 +1,30 @@
/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: ./lib/algorithms/iterative/SchurRedBlack.h
Copyright (C) 2015
Author: Peter Boyle <paboyle@ph.ed.ac.uk>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#ifndef GRID_SCHUR_RED_BLACK_H
#define GRID_SCHUR_RED_BLACK_H

28
lib/cartesian/Cartesian_base.h
View File

@ -1,3 +1,31 @@
/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: ./lib/cartesian/Cartesian_base.h
Copyright (C) 2015
Author: Peter Boyle <paboyle@ph.ed.ac.uk>
Author: paboyle <paboyle@ph.ed.ac.uk>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#ifndef GRID_CARTESIAN_BASE_H
#define GRID_CARTESIAN_BASE_H

27
lib/cartesian/Cartesian_full.h
View File

@ -1,3 +1,30 @@
/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: ./lib/cartesian/Cartesian_full.h
Copyright (C) 2015
Author: Peter Boyle <paboyle@ph.ed.ac.uk>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#ifndef GRID_CARTESIAN_FULL_H
#define GRID_CARTESIAN_FULL_H

28
lib/cartesian/Cartesian_red_black.h
View File

@ -1,3 +1,31 @@
/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: ./lib/cartesian/Cartesian_red_black.h
Copyright (C) 2015
Author: Azusa Yamaguchi <ayamaguc@staffmail.ed.ac.uk>
Author: Peter Boyle <paboyle@ph.ed.ac.uk>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#ifndef GRID_CARTESIAN_RED_BLACK_H
#define GRID_CARTESIAN_RED_BLACK_H

27
lib/communicator/Communicator_base.h
View File

@ -1,3 +1,30 @@
/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: ./lib/communicator/Communicator_base.h
Copyright (C) 2015
Author: Peter Boyle <paboyle@ph.ed.ac.uk>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#ifndef GRID_COMMUNICATOR_BASE_H
#define GRID_COMMUNICATOR_BASE_H

27
lib/communicator/Communicator_mpi.cc
View File

@ -1,3 +1,30 @@
/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: ./lib/communicator/Communicator_mpi.cc
Copyright (C) 2015
Author: Peter Boyle <paboyle@ph.ed.ac.uk>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#include "Grid.h"
#include <mpi.h>

27
lib/communicator/Communicator_none.cc
View File

@ -1,3 +1,30 @@
/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: ./lib/communicator/Communicator_none.cc
Copyright (C) 2015
Author: Peter Boyle <paboyle@ph.ed.ac.uk>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#include "Grid.h"
namespace Grid {

27
lib/cshift/Cshift_common.h
View File

@ -1,3 +1,30 @@
/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: ./lib/cshift/Cshift_common.h
Copyright (C) 2015
Author: Peter Boyle <paboyle@ph.ed.ac.uk>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#ifndef _GRID_CSHIFT_COMMON_H_
#define _GRID_CSHIFT_COMMON_H_

30
lib/cshift/Cshift_mpi.h
View File

@ -1,3 +1,31 @@
/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: ./lib/cshift/Cshift_mpi.h
Copyright (C) 2015
Author: Peter Boyle <paboyle@ph.ed.ac.uk>
Author: paboyle <paboyle@ph.ed.ac.uk>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#ifndef _GRID_CSHIFT_MPI_H_
#define _GRID_CSHIFT_MPI_H_
@ -167,7 +195,7 @@ template<class vobj> void Cshift_comms_simd(Lattice<vobj> &ret,const Lattice<vo
std::vector<std::vector<scalar_object> > recv_buf_extract(Nsimd,std::vector<scalar_object>(buffer_size) );
int bytes = buffer_size*sizeof(scalar_object);
std::vector<scalar_object *> pointers(Nsimd); //
std::vector<scalar_object *> pointers(Nsimd); //
std::vector<scalar_object *> rpointers(Nsimd); // received pointers
///////////////////////////////////////////

27
lib/cshift/Cshift_none.h
View File

@ -1,3 +1,30 @@
/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: ./lib/cshift/Cshift_none.h
Copyright (C) 2015
Author: Peter Boyle <paboyle@ph.ed.ac.uk>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#ifndef _GRID_CSHIFT_NONE_H_
#define _GRID_CSHIFT_NONE_H_
namespace Grid {

29
lib/lattice/Lattice_ET.h
View File

@ -1,3 +1,32 @@
/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: ./lib/lattice/Lattice_ET.h
Copyright (C) 2015
Author: Azusa Yamaguchi <ayamaguc@staffmail.ed.ac.uk>
Author: Peter Boyle <paboyle@ph.ed.ac.uk>
Author: neo <cossu@post.kek.jp>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#ifndef GRID_LATTICE_ET_H
#define GRID_LATTICE_ET_H

27
lib/lattice/Lattice_arith.h
View File

@ -1,3 +1,30 @@
/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: ./lib/lattice/Lattice_arith.h
Copyright (C) 2015
Author: Peter Boyle <paboyle@ph.ed.ac.uk>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#ifndef GRID_LATTICE_ARITH_H
#define GRID_LATTICE_ARITH_H

34
lib/lattice/Lattice_base.h
View File

@ -1,3 +1,32 @@
/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: ./lib/lattice/Lattice_base.h
Copyright (C) 2015
Author: Azusa Yamaguchi <ayamaguc@staffmail.ed.ac.uk>
Author: Peter Boyle <paboyle@ph.ed.ac.uk>
Author: paboyle <paboyle@ph.ed.ac.uk>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#ifndef GRID_LATTICE_BASE_H
#define GRID_LATTICE_BASE_H
@ -73,7 +102,6 @@ public:
typedef typename vobj::scalar_type scalar_type;
typedef typename vobj::vector_type vector_type;
typedef vobj vector_object;
////////////////////////////////////////////////////////////////////////////////
// Expression Template closure support
@ -213,8 +241,8 @@ PARALLEL_FOR_LOOP
// what about a default grid?
//////////////////////////////////////////////////////////////////
Lattice(GridBase *grid) : _grid(grid), _odata(_grid->oSites()) {
// _odata.reserve(_grid->oSites());
// _odata.resize(_grid->oSites());
// _odata.reserve(_grid->oSites());
// _odata.resize(_grid->oSites());
// std::cout << "Constructing lattice object with Grid pointer "<<_grid<<std::endl;
assert((((uint64_t)&_odata[0])&0xF) ==0);
checkerboard=0;

28
lib/lattice/Lattice_comparison.h
View File

@ -1,3 +1,31 @@
/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: ./lib/lattice/Lattice_comparison.h
Copyright (C) 2015
Author: Azusa Yamaguchi <ayamaguc@staffmail.ed.ac.uk>
Author: Peter Boyle <paboyle@ph.ed.ac.uk>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#ifndef GRID_LATTICE_COMPARISON_H
#define GRID_LATTICE_COMPARISON_H

28
lib/lattice/Lattice_comparison_utils.h
View File

@ -1,3 +1,31 @@
/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: ./lib/lattice/Lattice_comparison_utils.h
Copyright (C) 2015
Author: Azusa Yamaguchi <ayamaguc@staffmail.ed.ac.uk>
Author: Peter Boyle <paboyle@ph.ed.ac.uk>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#ifndef GRID_COMPARISON_H
#define GRID_COMPARISON_H

27
lib/lattice/Lattice_conformable.h
View File

@ -1,3 +1,30 @@
/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: ./lib/lattice/Lattice_conformable.h
Copyright (C) 2015
Author: Peter Boyle <paboyle@ph.ed.ac.uk>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#ifndef GRID_LATTICE_CONFORMABLE_H
#define GRID_LATTICE_CONFORMABLE_H

27
lib/lattice/Lattice_coordinate.h
View File

@ -1,3 +1,30 @@
/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: ./lib/lattice/Lattice_coordinate.h
Copyright (C) 2015
Author: Peter Boyle <paboyle@ph.ed.ac.uk>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#ifndef GRID_LATTICE_COORDINATE_H
#define GRID_LATTICE_COORDINATE_H

27
lib/lattice/Lattice_local.h
View File

@ -1,3 +1,30 @@
/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: ./lib/lattice/Lattice_local.h
Copyright (C) 2015
Author: Peter Boyle <paboyle@ph.ed.ac.uk>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#ifndef GRID_LATTICE_LOCALREDUCTION_H
#define GRID_LATTICE_LOCALREDUCTION_H

27
lib/lattice/Lattice_overload.h
View File

@ -1,3 +1,30 @@
/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: ./lib/lattice/Lattice_overload.h
Copyright (C) 2015
Author: Peter Boyle <paboyle@ph.ed.ac.uk>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#ifndef GRID_LATTICE_OVERLOAD_H
#define GRID_LATTICE_OVERLOAD_H

29
lib/lattice/Lattice_peekpoke.h
View File

@ -1,3 +1,32 @@
/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: ./lib/lattice/Lattice_peekpoke.h
Copyright (C) 2015
Author: Azusa Yamaguchi <ayamaguc@staffmail.ed.ac.uk>
Author: Peter Boyle <paboyle@ph.ed.ac.uk>
Author: Peter Boyle <peterboyle@Peters-MacBook-Pro-2.local>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#ifndef GRID_LATTICE_PEEK_H
#define GRID_LATTICE_PEEK_H

29
lib/lattice/Lattice_reality.h
View File

@ -1,3 +1,32 @@
/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: ./lib/lattice/Lattice_reality.h
Copyright (C) 2015
Author: Azusa Yamaguchi <ayamaguc@staffmail.ed.ac.uk>
Author: Peter Boyle <paboyle@ph.ed.ac.uk>
Author: neo <cossu@post.kek.jp>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#ifndef GRID_LATTICE_REALITY_H
#define GRID_LATTICE_REALITY_H

31
lib/lattice/Lattice_reduction.h
View File

@ -1,3 +1,32 @@
/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: ./lib/lattice/Lattice_reduction.h
Copyright (C) 2015
Author: Azusa Yamaguchi <ayamaguc@staffmail.ed.ac.uk>
Author: Peter Boyle <paboyle@ph.ed.ac.uk>
Author: paboyle <paboyle@ph.ed.ac.uk>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#ifndef GRID_LATTICE_REDUCTION_H
#define GRID_LATTICE_REDUCTION_H
@ -19,7 +48,6 @@ namespace Grid {
{
typedef typename vobj::scalar_type scalar_type;
typedef typename vobj::vector_type vector_type;
vector_type vnrm;
scalar_type nrm;
GridBase *grid = left._grid;
@ -31,7 +59,6 @@ namespace Grid {
PARALLEL_FOR_LOOP
for(int thr=0;thr<grid->SumArraySize();thr++){
int nwork, mywork, myoff;
GridThread::GetWork(left._grid->oSites(),thr,mywork,myoff);

138
lib/lattice/Lattice_rng.h
View File

@ -1,3 +1,31 @@
/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: ./lib/lattice/Lattice_rng.h
Copyright (C) 2015
Author: Peter Boyle <paboyle@ph.ed.ac.uk>
Author: paboyle <paboyle@ph.ed.ac.uk>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#ifndef GRID_LATTICE_RNG_H
#define GRID_LATTICE_RNG_H
@ -22,13 +50,16 @@ namespace Grid {
assert(fine->_processors[d]==1);
}
// local and global volumes subdivide cleanly after SIMDization
int multiplicity=1;
for(int d=0;d<lowerdims;d++){
multiplicity=multiplicity*fine->_rdimensions[d];
}
// local and global volumes subdivide cleanly after SIMDization
for(int d=0;d<rngdims;d++){
int fd= d+lowerdims;
assert(coarse->_processors[d] == fine->_processors[fd]);
assert(coarse->_simd_layout[d] == fine->_simd_layout[fd]);
assert((fine->_rdimensions[fd] / coarse->_rdimensions[d])* coarse->_rdimensions[d]==fine->_rdimensions[fd]);
assert(((fine->_rdimensions[fd] / coarse->_rdimensions[d])* coarse->_rdimensions[d])==fine->_rdimensions[fd]);
multiplicity = multiplicity *fine->_rdimensions[fd] / coarse->_rdimensions[d];
}
@ -76,16 +107,40 @@ namespace Grid {
public:
GridRNGbase() : _uniform{0,1}, _gaussian(0.0,1.0) {};
int _seeded;
// One generator per site.
// Uniform and Gaussian distributions from these generators.
std::vector<std::ranlux48> _generators;
std::uniform_real_distribution<double> _uniform;
std::normal_distribution<double> _gaussian;
#ifdef RNG_RANLUX
typedef uint64_t RngStateType;
typedef std::ranlux48 RngEngine;
static const int RngStateCount = 15;
#else
typedef std::mt19937 RngEngine;
typedef uint32_t RngStateType;
static const int RngStateCount = std::mt19937::state_size;
#endif
std::vector<RngEngine> _generators;
std::vector<std::uniform_real_distribution<RealD> > _uniform;
std::vector<std::normal_distribution<RealD> > _gaussian;
void GetState(std::vector<RngStateType> & saved,int gen) {
saved.resize(RngStateCount);
std::stringstream ss;
ss<<_generators[gen];
ss.seekg(0,ss.beg);
for(int i=0;i<RngStateCount;i++){
ss>>saved[i];
}
}
void SetState(std::vector<RngStateType> & saved,int gen){
assert(saved.size()==RngStateCount);
std::stringstream ss;
for(int i=0;i<RngStateCount;i++){
ss<< saved[i]<<" ";
}
ss.seekg(0,ss.beg);
ss>>_generators[gen];
}
};
class GridSerialRNG : public GridRNGbase {
@ -98,18 +153,20 @@ namespace Grid {
{
typename source::result_type init = src();
CartesianCommunicator::BroadcastWorld(0,(void *)&init,sizeof(init));
_generators[0] = std::ranlux48(init);
_generators[0] = RngEngine(init);
_seeded=1;
}
GridSerialRNG() : GridRNGbase() {
_generators.resize(1);
_uniform.resize(1,std::uniform_real_distribution<RealD>{0,1});
_gaussian.resize(1,std::normal_distribution<RealD>(0.0,1.0) );
_seeded=0;
}
template <class sobj,class distribution> inline void fill(sobj &l,distribution &dist){
template <class sobj,class distribution> inline void fill(sobj &l,std::vector<distribution> &dist){
typedef typename sobj::scalar_type scalar_type;
@ -117,56 +174,65 @@ namespace Grid {
scalar_type *buf = (scalar_type *) & l;
dist[0].reset();
for(int idx=0;idx<words;idx++){
fillScalar(buf[idx],dist,_generators[0]);
fillScalar(buf[idx],dist[0],_generators[0]);
}
CartesianCommunicator::BroadcastWorld(0,(void *)&l,sizeof(l));
};
template <class distribution> inline void fill(ComplexF &l,distribution &dist){
fillScalar(l,dist,_generators[0]);
template <class distribution> inline void fill(ComplexF &l,std::vector<distribution> &dist){
dist[0].reset();
fillScalar(l,dist[0],_generators[0]);
CartesianCommunicator::BroadcastWorld(0,(void *)&l,sizeof(l));
}
template <class distribution> inline void fill(ComplexD &l,distribution &dist){
fillScalar(l,dist,_generators[0]);
template <class distribution> inline void fill(ComplexD &l,std::vector<distribution> &dist){
dist[0].reset();
fillScalar(l,dist[0],_generators[0]);
CartesianCommunicator::BroadcastWorld(0,(void *)&l,sizeof(l));
}
template <class distribution> inline void fill(RealF &l,distribution &dist){
fillScalar(l,dist,_generators[0]);
template <class distribution> inline void fill(RealF &l,std::vector<distribution> &dist){
dist[0].reset();
fillScalar(l,dist[0],_generators[0]);
CartesianCommunicator::BroadcastWorld(0,(void *)&l,sizeof(l));
}
template <class distribution> inline void fill(RealD &l,distribution &dist){
fillScalar(l,dist,_generators[0]);
template <class distribution> inline void fill(RealD &l,std::vector<distribution> &dist){
dist[0].reset();
fillScalar(l,dist[0],_generators[0]);
CartesianCommunicator::BroadcastWorld(0,(void *)&l,sizeof(l));
}
// vector fill
template <class distribution> inline void fill(vComplexF &l,distribution &dist){
template <class distribution> inline void fill(vComplexF &l,std::vector<distribution> &dist){
RealF *pointer=(RealF *)&l;
dist[0].reset();
for(int i=0;i<2*vComplexF::Nsimd();i++){
fillScalar(pointer[i],dist,_generators[0]);
fillScalar(pointer[i],dist[0],_generators[0]);
}
CartesianCommunicator::BroadcastWorld(0,(void *)&l,sizeof(l));
}
template <class distribution> inline void fill(vComplexD &l,distribution &dist){
template <class distribution> inline void fill(vComplexD &l,std::vector<distribution> &dist){
RealD *pointer=(RealD *)&l;
dist[0].reset();
for(int i=0;i<2*vComplexD::Nsimd();i++){
fillScalar(pointer[i],dist,_generators[0]);
fillScalar(pointer[i],dist[0],_generators[0]);
}
CartesianCommunicator::BroadcastWorld(0,(void *)&l,sizeof(l));
}
template <class distribution> inline void fill(vRealF &l,distribution &dist){
template <class distribution> inline void fill(vRealF &l,std::vector<distribution> &dist){
RealF *pointer=(RealF *)&l;
dist[0].reset();
for(int i=0;i<vRealF::Nsimd();i++){
fillScalar(pointer[i],dist,_generators[0]);
fillScalar(pointer[i],dist[0],_generators[0]);
}
CartesianCommunicator::BroadcastWorld(0,(void *)&l,sizeof(l));
}
template <class distribution> inline void fill(vRealD &l,distribution &dist){
template <class distribution> inline void fill(vRealD &l,std::vector<distribution> &dist){
RealD *pointer=(RealD *)&l;
dist[0].reset();
for(int i=0;i<vRealD::Nsimd();i++){
fillScalar(pointer[i],dist,_generators[0]);
fillScalar(pointer[i],dist[0],_generators[0]);
}
CartesianCommunicator::BroadcastWorld(0,(void *)&l,sizeof(l));
}
@ -185,12 +251,6 @@ namespace Grid {
class GridParallelRNG : public GridRNGbase {
public:
// One generator per site.
std::vector<std::ranlux48> _generators;
// Uniform and Gaussian distributions from these generators.
std::uniform_real_distribution<double> _uniform;
std::normal_distribution<double> _gaussian;
GridBase *_grid;
int _vol;
@ -202,7 +262,10 @@ namespace Grid {
GridParallelRNG(GridBase *grid) : GridRNGbase() {
_grid=grid;
_vol =_grid->iSites()*_grid->oSites();
_generators.resize(_vol);
_uniform.resize(_vol,std::uniform_real_distribution<RealD>{0,1});
_gaussian.resize(_vol,std::normal_distribution<RealD>(0.0,1.0) );
_seeded=0;
}
@ -220,7 +283,7 @@ namespace Grid {
int gsites = _grid->_gsites;
typename source::result_type init = src();
std::ranlux48 pseeder(init);
RngEngine pseeder(init);
std::uniform_int_distribution<uint64_t> ui;
for(int gidx=0;gidx<gsites;gidx++){
@ -241,7 +304,7 @@ namespace Grid {
if( rank == _grid->ThisRank() ){
fixedSeed ssrc(site_seeds);
typename source::result_type sinit = ssrc();
_generators[l_idx] = std::ranlux48(sinit);
_generators[l_idx] = RngEngine(sinit);
}
}
_seeded=1;
@ -251,7 +314,7 @@ namespace Grid {
//void SaveState(const std::string<char> &file);
//void LoadState(const std::string<char> &file);
template <class vobj,class distribution> inline void fill(Lattice<vobj> &l,distribution &dist){
template <class vobj,class distribution> inline void fill(Lattice<vobj> &l,std::vector<distribution> &dist){
typedef typename vobj::scalar_object scalar_object;
typedef typename vobj::scalar_type scalar_type;
@ -275,8 +338,9 @@ PARALLEL_FOR_LOOP
for(int si=0;si<Nsimd;si++){
int gdx = generator_idx(ss,si); // index of generator state
scalar_type *pointer = (scalar_type *)&buf[si];
dist[gdx].reset();
for(int idx=0;idx<words;idx++){
fillScalar(pointer[idx],dist,_generators[gdx]);
fillScalar(pointer[idx],dist[gdx],_generators[gdx]);
}
}

27
lib/lattice/Lattice_trace.h
View File

@ -1,3 +1,30 @@
/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: ./lib/lattice/Lattice_trace.h
Copyright (C) 2015
Author: Peter Boyle <paboyle@ph.ed.ac.uk>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#ifndef GRID_LATTICE_TRACE_H
#define GRID_LATTICE_TRACE_H

27
lib/lattice/Lattice_transfer.h
View File

@ -1,3 +1,30 @@
/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: ./lib/lattice/Lattice_transfer.h
Copyright (C) 2015
Author: Peter Boyle <paboyle@ph.ed.ac.uk>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#ifndef GRID_LATTICE_TRANSFER_H
#define GRID_LATTICE_TRANSFER_H

28
lib/lattice/Lattice_transpose.h
View File

@ -1,3 +1,31 @@
/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: ./lib/lattice/Lattice_transpose.h
Copyright (C) 2015
Author: Azusa Yamaguchi <ayamaguc@staffmail.ed.ac.uk>
Author: Peter Boyle <paboyle@ph.ed.ac.uk>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#ifndef GRID_LATTICE_TRANSPOSE_H
#define GRID_LATTICE_TRANSPOSE_H

30
lib/lattice/Lattice_unary.h
View File

@ -1,3 +1,33 @@
/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: ./lib/lattice/Lattice_unary.h
Copyright (C) 2015
Author: Azusa Yamaguchi <ayamaguc@staffmail.ed.ac.uk>
Author: Peter Boyle <paboyle@ph.ed.ac.uk>
Author: neo <cossu@post.kek.jp>
Author: paboyle <paboyle@ph.ed.ac.uk>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#ifndef GRID_LATTICE_UNARY_H
#define GRID_LATTICE_UNARY_H

29
lib/lattice/Lattice_where.h
View File

@ -1,3 +1,32 @@
/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: ./lib/lattice/Lattice_where.h
Copyright (C) 2015
Author: Azusa Yamaguchi <ayamaguc@staffmail.ed.ac.uk>
Author: Peter Boyle <paboyle@ph.ed.ac.uk>
Author: Peter Boyle <peterboyle@Peters-MacBook-Pro-2.local>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#ifndef GRID_LATTICE_WHERE_H
#define GRID_LATTICE_WHERE_H
namespace Grid {

135
lib/parallelIO/BinaryIO.h
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@ -1,3 +1,31 @@
/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: ./lib/parallelIO/BinaryIO.h
Copyright (C) 2015
Author: Peter Boyle <paboyle@ph.ed.ac.uk>
Author: paboyle <paboyle@ph.ed.ac.uk>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#ifndef GRID_BINARY_IO_H
#define GRID_BINARY_IO_H
@ -107,7 +135,7 @@ class BinaryIO {
}
}
template<class vobj,class fobj,class munger> static inline void Uint32Checksum(Lattice<vobj> lat,munger munge,uint32_t &csum)
template<class vobj,class fobj,class munger> static inline void Uint32Checksum(Lattice<vobj> &lat,munger munge,uint32_t &csum)
{
typedef typename vobj::scalar_object sobj;
GridBase *grid = lat._grid ;
@ -232,6 +260,110 @@ class BinaryIO {
return csum;
}
static inline uint32_t writeRNGSerial(GridSerialRNG &serial,GridParallelRNG &parallel,std::string file,int offset)
{
typedef typename GridSerialRNG::RngStateType RngStateType;
const int RngStateCount = GridSerialRNG::RngStateCount;
GridBase *grid = parallel._grid;
int gsites = grid->_gsites;
//////////////////////////////////////////////////
// Serialise through node zero
//////////////////////////////////////////////////
std::cout<< GridLogMessage<< "Serial RNG write I/O "<< file<<std::endl;
std::ofstream fout;
if ( grid->IsBoss() ) {
fout.open(file,std::ios::binary|std::ios::out|std::ios::in);
fout.seekp(offset);
}
uint32_t csum=0;
std::vector<RngStateType> saved(RngStateCount);
int bytes = sizeof(RngStateType)*saved.size();
std::vector<int> gcoor;
for(int gidx=0;gidx<gsites;gidx++){
int rank,o_idx,i_idx;
grid->GlobalIndexToGlobalCoor(gidx,gcoor);
grid->GlobalCoorToRankIndex(rank,o_idx,i_idx,gcoor);
int l_idx=parallel.generator_idx(o_idx,i_idx);
if( rank == grid->ThisRank() ){
// std::cout << "rank" << rank<<" Getting state for index "<<l_idx<<std::endl;
parallel.GetState(saved,l_idx);
}
grid->Broadcast(rank,(void *)&saved[0],bytes);
if ( grid->IsBoss() ) {
Uint32Checksum((uint32_t *)&saved[0],bytes,csum);
fout.write((char *)&saved[0],bytes);
}
}
if ( grid->IsBoss() ) {
serial.GetState(saved,0);
Uint32Checksum((uint32_t *)&saved[0],bytes,csum);
fout.write((char *)&saved[0],bytes);
}
return csum;
}
static inline uint32_t readRNGSerial(GridSerialRNG &serial,GridParallelRNG &parallel,std::string file,int offset)
{
typedef typename GridSerialRNG::RngStateType RngStateType;
const int RngStateCount = GridSerialRNG::RngStateCount;
GridBase *grid = parallel._grid;
int gsites = grid->_gsites;
//////////////////////////////////////////////////
// Serialise through node zero
//////////////////////////////////////////////////
std::cout<< GridLogMessage<< "Serial RNG read I/O "<< file<<std::endl;
std::ifstream fin(file,std::ios::binary|std::ios::in);
fin.seekg(offset);
uint32_t csum=0;
std::vector<RngStateType> saved(RngStateCount);
int bytes = sizeof(RngStateType)*saved.size();
std::vector<int> gcoor;
for(int gidx=0;gidx<gsites;gidx++){
int rank,o_idx,i_idx;
grid->GlobalIndexToGlobalCoor(gidx,gcoor);
grid->GlobalCoorToRankIndex(rank,o_idx,i_idx,gcoor);
int l_idx=parallel.generator_idx(o_idx,i_idx);
if ( grid->IsBoss() ) {
fin.read((char *)&saved[0],bytes);
Uint32Checksum((uint32_t *)&saved[0],bytes,csum);
}
grid->Broadcast(0,(void *)&saved[0],bytes);
if( rank == grid->ThisRank() ){
parallel.SetState(saved,l_idx);
}
}
if ( grid->IsBoss() ) {
fin.read((char *)&saved[0],bytes);
serial.SetState(saved,0);
Uint32Checksum((uint32_t *)&saved[0],bytes,csum);
}
return csum;
}
template<class vobj,class fobj,class munger>
static inline uint32_t readObjectParallel(Lattice<vobj> &Umu,std::string file,munger munge,int offset,const std::string &format)
{
@ -284,6 +416,7 @@ class BinaryIO {
{
uint32_t tmp = IOnode;
grid->GlobalSum(tmp);
std::cout<< std::dec ;
std::cout<< GridLogMessage<< "Parallel read I/O to "<< file << " with " <<tmp<< " IOnodes for subslice ";
for(int d=0;d<grid->_ndimension;d++){
std::cout<< range[d];

125
lib/parallelIO/NerscIO.h
View File

@ -1,3 +1,32 @@
/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: ./lib/parallelIO/NerscIO.h
Copyright (C) 2015
Author: Matt Spraggs <matthew.spraggs@gmail.com>
Author: Peter Boyle <paboyle@ph.ed.ac.uk>
Author: paboyle <paboyle@ph.ed.ac.uk>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#ifndef GRID_NERSC_IO_H
#define GRID_NERSC_IO_H
@ -51,7 +80,6 @@ class NerscField {
std::string floating_point;
};
//////////////////////////////////////////////////////////////////////
// Bit and Physical Checksumming and QA of data
//////////////////////////////////////////////////////////////////////
@ -69,8 +97,9 @@ inline void NerscGrid(GridBase *grid,NerscField &header)
template<class GaugeField>
inline void NerscStatistics(GaugeField & data,NerscField &header)
{
header.link_trace=Grid::QCD::WilsonLoops<GaugeField>::linkTrace(data);
header.plaquette =Grid::QCD::WilsonLoops<GaugeField>::avgPlaquette(data);
// How to convert data precision etc...
header.link_trace=Grid::QCD::WilsonLoops<PeriodicGimplR>::linkTrace(data);
header.plaquette =Grid::QCD::WilsonLoops<PeriodicGimplR>::avgPlaquette(data);
}
inline void NerscMachineCharacteristics(NerscField &header)
@ -181,9 +210,12 @@ inline void NerscMachineCharacteristics(NerscField &header)
class NerscIO : public BinaryIO {
public:
static inline void truncate(std::string file){
std::ofstream fout(file,std::ios::out);
}
static inline unsigned int writeHeader(NerscField &field,std::string file)
{
std::ofstream fout(file,std::ios::out);
std::ofstream fout(file,std::ios::out|std::ios::in);
fout.seekp(0,std::ios::beg);
fout << "BEGIN_HEADER" << std::endl;
@ -201,8 +233,7 @@ class NerscIO : public BinaryIO {
fout << "BOUNDARY_"<<i+1<<" = " << field.boundary[i] << std::endl;
}
fout << "CHECKSUM = "<< std::hex << std::setw(10) << field.checksum << std::endl;
fout << std::dec;
fout << "CHECKSUM = "<< std::hex << std::setw(10) << field.checksum << std::dec<<std::endl;
fout << "ENSEMBLE_ID = " << field.ensemble_id << std::endl;
fout << "ENSEMBLE_LABEL = " << field.ensemble_label << std::endl;
@ -287,9 +318,6 @@ static inline int readHeader(std::string file,GridBase *grid, NerscField &field
return field.data_start;
}
/////////////////////////////////////////////////////////////////////////////////////////////////////////////////////
// Now the meat: the object readers
/////////////////////////////////////////////////////////////////////////////////////////////////////////////////////
@ -377,6 +405,8 @@ static inline void writeConfiguration(Lattice<iLorentzColourMatrix<vsimd> > &Umu
uint32_t csum;
int offset;
truncate(file);
if ( two_row ) {
header.floating_point = std::string("IEEE64BIG");
@ -392,8 +422,7 @@ static inline void writeConfiguration(Lattice<iLorentzColourMatrix<vsimd> > &Umu
std::cout << GridLogMessage << " TESTING PARALLEL WRITE offsets " << offset1 << " "<< offset << std::endl;
std::cout << GridLogMessage <<std::hex<< " TESTING PARALLEL WRITE csums " << csum1 << " "<< csum << std::endl;
std::cout << std::dec;
std::cout << GridLogMessage << " TESTING PARALLEL WRITE csums " << csum1 << " "<<std::hex<< csum << std::dec<< std::endl;
assert(offset1==offset);
assert(csum1==csum);
@ -410,7 +439,81 @@ static inline void writeConfiguration(Lattice<iLorentzColourMatrix<vsimd> > &Umu
std::cout<<GridLogMessage <<"Written NERSC Configuration "<<file<< " checksum "<<std::hex<<csum<< std::dec<<" plaq "<< header.plaquette <<std::endl;
}
///////////////////////////////
// RNG state
///////////////////////////////
static inline void writeRNGState(GridSerialRNG &serial,GridParallelRNG &parallel,std::string file)
{
typedef typename GridParallelRNG::RngStateType RngStateType;
// Following should become arguments
NerscField header;
header.sequence_number = 1;
header.ensemble_id = "UKQCD";
header.ensemble_label = "DWF";
GridBase *grid = parallel._grid;
NerscGrid(grid,header);
header.link_trace=0.0;
header.plaquette=0.0;
NerscMachineCharacteristics(header);
uint32_t csum;
int offset;
#ifdef RNG_RANLUX
header.floating_point = std::string("UINT64");
header.data_type = std::string("RANLUX48");
#else
header.floating_point = std::string("UINT32");
header.data_type = std::string("MT19937");
#endif
truncate(file);
offset = writeHeader(header,file);
csum=BinaryIO::writeRNGSerial(serial,parallel,file,offset);
header.checksum = csum;
offset = writeHeader(header,file);
std::cout<<GridLogMessage <<"Written NERSC RNG STATE "<<file<< " checksum "<<std::hex<<csum<<std::dec<<std::endl;
}
static inline void readRNGState(GridSerialRNG &serial,GridParallelRNG & parallel,NerscField& header,std::string file)
{
typedef typename GridParallelRNG::RngStateType RngStateType;
GridBase *grid = parallel._grid;
int offset = readHeader(file,grid,header);
NerscField clone(header);
std::string format(header.floating_point);
std::string data_type(header.data_type);
#ifdef RNG_RANLUX
assert(format == std::string("UINT64"));
assert(data_type == std::string("RANLUX48"));
#else
assert(format == std::string("UINT32"));
assert(data_type == std::string("MT19937"));
#endif
// depending on datatype, set up munger;
// munger is a function of <floating point, Real, data_type>
uint32_t csum=BinaryIO::readRNGSerial(serial,parallel,file,offset);
assert(csum == header.checksum );
std::cout<<GridLogMessage <<"Read NERSC RNG file "<<file<< " format "<< data_type <<std::endl;
}
};
}}
#endif

32
lib/qcd/QCD.h
View File

@ -1,3 +1,34 @@
/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: ./lib/qcd/QCD.h
Copyright (C) 2015
Author: Azusa Yamaguchi <ayamaguc@staffmail.ed.ac.uk>
Author: Peter Boyle <paboyle@ph.ed.ac.uk>
Author: Peter Boyle <peterboyle@Peters-MacBook-Pro-2.local>
Author: neo <cossu@post.kek.jp>
Author: paboyle <paboyle@ph.ed.ac.uk>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#ifndef GRID_QCD_H
#define GRID_QCD_H
namespace Grid{
@ -425,7 +456,6 @@ namespace QCD {
#include <qcd/spin/TwoSpinor.h>
#include <qcd/utils/LinalgUtils.h>
#include <qcd/utils/CovariantCshift.h>
#include <qcd/utils/WilsonLoops.h>
#include <qcd/utils/SUn.h>
#include <qcd/action/Actions.h>
#include <qcd/hmc/integrators/Integrator.h>

28
lib/qcd/action/ActionBase.h
View File

@ -1,3 +1,31 @@
/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: ./lib/qcd/action/ActionBase.h
Copyright (C) 2015
Author: Peter Boyle <paboyle@ph.ed.ac.uk>
Author: neo <cossu@post.kek.jp>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#ifndef QCD_ACTION_BASE
#define QCD_ACTION_BASE
namespace Grid {

36
lib/qcd/action/ActionParams.h
View File

@ -1,3 +1,31 @@
/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: ./lib/qcd/action/ActionParams.h
Copyright (C) 2015
Author: Peter Boyle <paboyle@ph.ed.ac.uk>
Author: paboyle <paboyle@ph.ed.ac.uk>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#ifndef GRID_QCD_ACTION_PARAMS_H
#define GRID_QCD_ACTION_PARAMS_H
@ -6,10 +34,16 @@ namespace QCD {
// These can move into a params header and be given MacroMagic serialisation
struct GparityWilsonImplParams {
bool overlapCommsCompute;
std::vector<int> twists;
GparityWilsonImplParams () : twists(Nd,0), overlapCommsCompute(false) {};
};
struct WilsonImplParams { };
struct WilsonImplParams {
bool overlapCommsCompute;
WilsonImplParams() : overlapCommsCompute(false) {};
};
struct OneFlavourRationalParams {
RealD lo;

83
lib/qcd/action/Actions.h
View File

@ -1,11 +1,38 @@
/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: ./lib/qcd/action/Actions.h
Copyright (C) 2015
Author: Azusa Yamaguchi <ayamaguc@staffmail.ed.ac.uk>
Author: Peter Boyle <pabobyle@ph.ed.ac.uk>
Author: Peter Boyle <paboyle@ph.ed.ac.uk>
Author: Peter Boyle <peterboyle@Peters-MacBook-Pro-2.local>
Author: neo <cossu@post.kek.jp>
Author: paboyle <paboyle@ph.ed.ac.uk>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#ifndef GRID_QCD_ACTIONS_H
#define GRID_QCD_ACTIONS_H
// Some reorganisation likely required as both Chroma and IroIro
// are separating the concept of the operator from that of action.
//
// The FermAction contains methods to create
// * Linear operators (Hermitian and non-hermitian) .. my LinearOperator
// * System solvers (Hermitian and non-hermitian) .. my OperatorFunction
// * MultiShift System solvers (Hermitian and non-hermitian) .. my OperatorFunction
@ -19,6 +46,9 @@
////////////////////////////////////////////
// Utility functions
////////////////////////////////////////////
#include <qcd/action/gauge/GaugeImpl.h>
#include <qcd/utils/WilsonLoops.h>
#include <qcd/action/fermion/WilsonCompressor.h> //used by all wilson type fermions
#include <qcd/action/fermion/FermionOperatorImpl.h>
#include <qcd/action/fermion/FermionOperator.h>
@ -28,11 +58,38 @@
// Gauge Actions
////////////////////////////////////////////
#include <qcd/action/gauge/WilsonGaugeAction.h>
#include <qcd/action/gauge/PlaqPlusRectangleAction.h>
namespace Grid {
namespace QCD {
typedef WilsonGaugeAction<LatticeGaugeField> WilsonGaugeActionR;
typedef WilsonGaugeAction<LatticeGaugeFieldF> WilsonGaugeActionF;
typedef WilsonGaugeAction<LatticeGaugeFieldD> WilsonGaugeActionD;
typedef WilsonGaugeAction<PeriodicGimplR> WilsonGaugeActionR;
typedef WilsonGaugeAction<PeriodicGimplF> WilsonGaugeActionF;
typedef WilsonGaugeAction<PeriodicGimplD> WilsonGaugeActionD;
typedef PlaqPlusRectangleAction<PeriodicGimplR> PlaqPlusRectangleActionR;
typedef PlaqPlusRectangleAction<PeriodicGimplF> PlaqPlusRectangleActionF;
typedef PlaqPlusRectangleAction<PeriodicGimplD> PlaqPlusRectangleActionD;
typedef IwasakiGaugeAction<PeriodicGimplR> IwasakiGaugeActionR;
typedef IwasakiGaugeAction<PeriodicGimplF> IwasakiGaugeActionF;
typedef IwasakiGaugeAction<PeriodicGimplD> IwasakiGaugeActionD;
typedef SymanzikGaugeAction<PeriodicGimplR> SymanzikGaugeActionR;
typedef SymanzikGaugeAction<PeriodicGimplF> SymanzikGaugeActionF;
typedef SymanzikGaugeAction<PeriodicGimplD> SymanzikGaugeActionD;
typedef WilsonGaugeAction<ConjugateGimplR> ConjugateWilsonGaugeActionR;
typedef WilsonGaugeAction<ConjugateGimplF> ConjugateWilsonGaugeActionF;
typedef WilsonGaugeAction<ConjugateGimplD> ConjugateWilsonGaugeActionD;
typedef PlaqPlusRectangleAction<ConjugateGimplR> ConjugatePlaqPlusRectangleActionR;
typedef PlaqPlusRectangleAction<ConjugateGimplF> ConjugatePlaqPlusRectangleActionF;
typedef PlaqPlusRectangleAction<ConjugateGimplD> ConjugatePlaqPlusRectangleActionD;
typedef IwasakiGaugeAction<ConjugateGimplR> ConjugateIwasakiGaugeActionR;
typedef IwasakiGaugeAction<ConjugateGimplF> ConjugateIwasakiGaugeActionF;
typedef IwasakiGaugeAction<ConjugateGimplD> ConjugateIwasakiGaugeActionD;
typedef SymanzikGaugeAction<ConjugateGimplR> ConjugateSymanzikGaugeActionR;
typedef SymanzikGaugeAction<ConjugateGimplF> ConjugateSymanzikGaugeActionF;
typedef SymanzikGaugeAction<ConjugateGimplD> ConjugateSymanzikGaugeActionD;
}}
////////////////////////////////////////////////////////////////////////////////////////////////////
@ -63,6 +120,7 @@ typedef WilsonGaugeAction<LatticeGaugeFieldD> WilsonGaugeActionD;
////////////////////////////////////////////
#include <qcd/action/fermion/WilsonFermion.h> // 4d wilson like
#include <qcd/action/fermion/WilsonTMFermion.h> // 4d wilson like
#include <qcd/action/fermion/WilsonFermion5D.h> // 5d base used by all 5d overlap types
//#include <qcd/action/fermion/CloverFermion.h>
@ -99,6 +157,10 @@ typedef WilsonFermion<WilsonImplR> WilsonFermionR;
typedef WilsonFermion<WilsonImplF> WilsonFermionF;
typedef WilsonFermion<WilsonImplD> WilsonFermionD;
typedef WilsonTMFermion<WilsonImplR> WilsonTMFermionR;
typedef WilsonTMFermion<WilsonImplF> WilsonTMFermionF;
typedef WilsonTMFermion<WilsonImplD> WilsonTMFermionD;
typedef DomainWallFermion<WilsonImplR> DomainWallFermionR;
typedef DomainWallFermion<WilsonImplF> DomainWallFermionF;
typedef DomainWallFermion<WilsonImplD> DomainWallFermionD;
@ -167,11 +229,6 @@ typedef MobiusFermion<GparityWilsonImplD> GparityMobiusFermionD;
#include <qcd/action/pseudofermion/TwoFlavourEvenOdd.h>
#include <qcd/action/pseudofermion/TwoFlavourEvenOddRatio.h>
//IroIro inserted general "Nf" param; could also be done,
//but not clear why unless into large Nf BSM studies
//Even there, don't want the explicit (2) on power denominator
//if even number of flavours, so further generalised interface
//would be required but easy.
#include <qcd/action/pseudofermion/OneFlavourRational.h>
#include <qcd/action/pseudofermion/OneFlavourRationalRatio.h>
#include <qcd/action/pseudofermion/OneFlavourEvenOddRational.h>

30
lib/qcd/action/fermion/CayleyFermion5D.cc
View File

@ -1,3 +1,33 @@
/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: ./lib/qcd/action/fermion/CayleyFermion5D.cc
Copyright (C) 2015
Author: Peter Boyle <pabobyle@ph.ed.ac.uk>
Author: Peter Boyle <paboyle@ph.ed.ac.uk>
Author: Peter Boyle <peterboyle@Peters-MacBook-Pro-2.local>
Author: paboyle <paboyle@ph.ed.ac.uk>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#include <Grid.h>
namespace Grid {
namespace QCD {

28
lib/qcd/action/fermion/CayleyFermion5D.h
View File

@ -1,3 +1,31 @@
/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: ./lib/qcd/action/fermion/CayleyFermion5D.h
Copyright (C) 2015
Author: Peter Boyle <pabobyle@ph.ed.ac.uk>
Author: Peter Boyle <paboyle@ph.ed.ac.uk>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#ifndef GRID_QCD_CAYLEY_FERMION_H
#define GRID_QCD_CAYLEY_FERMION_H

28
lib/qcd/action/fermion/ContinuedFractionFermion5D.cc
View File

@ -1,3 +1,31 @@
/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: ./lib/qcd/action/fermion/ContinuedFractionFermion5D.cc
Copyright (C) 2015
Author: Peter Boyle <pabobyle@ph.ed.ac.uk>
Author: Peter Boyle <paboyle@ph.ed.ac.uk>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#include <Grid.h>
namespace Grid {

28
lib/qcd/action/fermion/ContinuedFractionFermion5D.h
View File

@ -1,3 +1,31 @@
/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: ./lib/qcd/action/fermion/ContinuedFractionFermion5D.h
Copyright (C) 2015
Author: Peter Boyle <pabobyle@ph.ed.ac.uk>
Author: Peter Boyle <paboyle@ph.ed.ac.uk>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#ifndef GRID_QCD_CONTINUED_FRACTION_H
#define GRID_QCD_CONTINUED_FRACTION_H

28
lib/qcd/action/fermion/DomainWallFermion.h
View File

@ -1,3 +1,31 @@
/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: ./lib/qcd/action/fermion/DomainWallFermion.h
Copyright (C) 2015
Author: Peter Boyle <pabobyle@ph.ed.ac.uk>
Author: Peter Boyle <paboyle@ph.ed.ac.uk>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#ifndef GRID_QCD_DOMAIN_WALL_FERMION_H
#define GRID_QCD_DOMAIN_WALL_FERMION_H

29
lib/qcd/action/fermion/FermionOperator.h
View File

@ -1,3 +1,32 @@
/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: ./lib/qcd/action/fermion/FermionOperator.h
Copyright (C) 2015
Author: Peter Boyle <pabobyle@ph.ed.ac.uk>
Author: Peter Boyle <paboyle@ph.ed.ac.uk>
Author: Peter Boyle <peterboyle@Peters-MacBook-Pro-2.local>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#ifndef GRID_QCD_FERMION_OPERATOR_H
#define GRID_QCD_FERMION_OPERATOR_H

81
lib/qcd/action/fermion/FermionOperatorImpl.h
View File

@ -1,3 +1,33 @@
/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: ./lib/qcd/action/fermion/FermionOperatorImpl.h
Copyright (C) 2015
Author: Peter Boyle <pabobyle@ph.ed.ac.uk>
Author: Peter Boyle <paboyle@ph.ed.ac.uk>
Author: Peter Boyle <peterboyle@Peters-MacBook-Pro-2.local>
Author: paboyle <paboyle@ph.ed.ac.uk>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#ifndef GRID_QCD_FERMION_OPERATOR_IMPL_H
#define GRID_QCD_FERMION_OPERATOR_IMPL_H
@ -58,38 +88,6 @@ namespace Grid {
// }
//////////////////////////////////////////////
////////////////////////////////////////////////////////////////////////
// Implementation dependent gauge types
////////////////////////////////////////////////////////////////////////
#define INHERIT_IMPL_TYPES(Base) \
INHERIT_GIMPL_TYPES(Base)\
INHERIT_FIMPL_TYPES(Base)
#define INHERIT_GIMPL_TYPES(GImpl) \
typedef typename GImpl::Simd Simd;\
typedef typename GImpl::GaugeLinkField GaugeLinkField;\
typedef typename GImpl::GaugeField GaugeField;
// Composition with smeared link, bc's etc.. probably need multiple inheritance
// Variable precision "S" and variable Nc
template<class S,int Nrepresentation=Nc>
class ImplGauge {
public:
typedef S Simd;
template<typename vtype> using iImplGaugeLink = iScalar<iScalar<iMatrix<vtype, Nrepresentation> > >;
template<typename vtype> using iImplGaugeField = iVector<iScalar<iMatrix<vtype, Nrepresentation> >, Nd >;
typedef iImplGaugeLink <Simd> SiteGaugeLink;
typedef iImplGaugeField <Simd> SiteGaugeField;
typedef Lattice<SiteGaugeLink> GaugeLinkField; // bit ugly naming; polarised gauge field, lorentz... all ugly
typedef Lattice<SiteGaugeField> GaugeField;
};
////////////////////////////////////////////////////////////////////////
// Implementation dependent fermion types
@ -104,14 +102,18 @@ namespace Grid {
typedef typename Impl::StencilImpl StencilImpl; \
typedef typename Impl::ImplParams ImplParams;
#define INHERIT_IMPL_TYPES(Base) \
INHERIT_GIMPL_TYPES(Base)\
INHERIT_FIMPL_TYPES(Base)
///////
// Single flavour four spinors with colour index
///////
template<class S,int Nrepresentation=Nc>
class WilsonImpl : public ImplGauge<S,Nrepresentation> {
class WilsonImpl : public PeriodicGaugeImpl< GaugeImplTypes< S,Nrepresentation> > {
public:
typedef ImplGauge<S,Nrepresentation> Gimpl;
typedef PeriodicGaugeImpl< GaugeImplTypes< S,Nrepresentation> > Gimpl;
INHERIT_GIMPL_TYPES(Gimpl);
@ -129,9 +131,13 @@ namespace Grid {
typedef WilsonCompressor<SiteHalfSpinor,SiteSpinor> Compressor;
typedef WilsonImplParams ImplParams;
typedef CartesianStencil<SiteSpinor,SiteHalfSpinor,Compressor> StencilImpl;
ImplParams Params;
WilsonImpl(const ImplParams &p= ImplParams()) : Params(p) {};
bool overlapCommsCompute(void) { return Params.overlapCommsCompute; };
inline void multLink(SiteHalfSpinor &phi,const SiteDoubledGaugeField &U,const SiteHalfSpinor &chi,int mu,StencilEntry *SE,StencilImpl &St){
mult(&phi(),&U(mu),&chi());
}
@ -180,10 +186,10 @@ PARALLEL_FOR_LOOP
////////////////////////////////////////////////////////////////////////////////////////
template<class S,int Nrepresentation>
class GparityWilsonImpl : public ImplGauge<S,Nrepresentation> {
class GparityWilsonImpl : public ConjugateGaugeImpl< GaugeImplTypes<S,Nrepresentation> >{
public:
typedef ImplGauge<S,Nrepresentation> Gimpl;
typedef ConjugateGaugeImpl< GaugeImplTypes<S,Nrepresentation> > Gimpl;
INHERIT_GIMPL_TYPES(Gimpl);
@ -202,9 +208,12 @@ PARALLEL_FOR_LOOP
typedef CartesianStencil<SiteSpinor,SiteHalfSpinor,Compressor> StencilImpl;
typedef GparityWilsonImplParams ImplParams;
ImplParams Params;
GparityWilsonImpl(const ImplParams &p= ImplParams()) : Params(p) {};
bool overlapCommsCompute(void) { return Params.overlapCommsCompute; };
// provide the multiply by link that is differentiated between Gparity (with flavour index) and non-Gparity
inline void multLink(SiteHalfSpinor &phi,const SiteDoubledGaugeField &U,const SiteHalfSpinor &chi,int mu,StencilEntry *SE,StencilImpl &St){

28
lib/qcd/action/fermion/MobiusFermion.h
View File

@ -1,3 +1,31 @@
/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: ./lib/qcd/action/fermion/MobiusFermion.h
Copyright (C) 2015
Author: Peter Boyle <pabobyle@ph.ed.ac.uk>
Author: Peter Boyle <paboyle@ph.ed.ac.uk>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#ifndef GRID_QCD_MOBIUS_FERMION_H
#define GRID_QCD_MOBIUS_FERMION_H

28
lib/qcd/action/fermion/MobiusZolotarevFermion.h
View File

@ -1,3 +1,31 @@
/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: ./lib/qcd/action/fermion/MobiusZolotarevFermion.h
Copyright (C) 2015
Author: Peter Boyle <pabobyle@ph.ed.ac.uk>
Author: Peter Boyle <paboyle@ph.ed.ac.uk>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#ifndef GRID_QCD_MOBIUS_ZOLOTAREV_FERMION_H
#define GRID_QCD_MOBIUS_ZOLOTAREV_FERMION_H

28
lib/qcd/action/fermion/OverlapWilsonCayleyTanhFermion.h
View File

@ -1,3 +1,31 @@
/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: ./lib/qcd/action/fermion/OverlapWilsonCayleyTanhFermion.h
Copyright (C) 2015
Author: Peter Boyle <pabobyle@ph.ed.ac.uk>
Author: Peter Boyle <paboyle@ph.ed.ac.uk>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#ifndef OVERLAP_WILSON_CAYLEY_TANH_FERMION_H
#define OVERLAP_WILSON_CAYLEY_TANH_FERMION_H

28
lib/qcd/action/fermion/OverlapWilsonCayleyZolotarevFermion.h
View File

@ -1,3 +1,31 @@
/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: ./lib/qcd/action/fermion/OverlapWilsonCayleyZolotarevFermion.h
Copyright (C) 2015
Author: Peter Boyle <pabobyle@ph.ed.ac.uk>
Author: Peter Boyle <paboyle@ph.ed.ac.uk>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#ifndef OVERLAP_WILSON_CAYLEY_ZOLOTAREV_FERMION_H
#define OVERLAP_WILSON_CAYLEY_ZOLOTAREV_FERMION_H

28
lib/qcd/action/fermion/OverlapWilsonContfracTanhFermion.h
View File

@ -1,3 +1,31 @@
/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: ./lib/qcd/action/fermion/OverlapWilsonContfracTanhFermion.h
Copyright (C) 2015
Author: Peter Boyle <pabobyle@ph.ed.ac.uk>
Author: Peter Boyle <paboyle@ph.ed.ac.uk>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#ifndef OVERLAP_WILSON_CONTFRAC_TANH_FERMION_H
#define OVERLAP_WILSON_CONTFRAC_TANH_FERMION_H

28
lib/qcd/action/fermion/OverlapWilsonContfracZolotarevFermion.h
View File

@ -1,3 +1,31 @@
/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: ./lib/qcd/action/fermion/OverlapWilsonContfracZolotarevFermion.h
Copyright (C) 2015
Author: Peter Boyle <pabobyle@ph.ed.ac.uk>
Author: Peter Boyle <paboyle@ph.ed.ac.uk>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#ifndef OVERLAP_WILSON_CONTFRAC_ZOLOTAREV_FERMION_H
#define OVERLAP_WILSON_CONTFRAC_ZOLOTAREV_FERMION_H

28
lib/qcd/action/fermion/OverlapWilsonPartialFractionTanhFermion.h
View File

@ -1,3 +1,31 @@
/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: ./lib/qcd/action/fermion/OverlapWilsonPartialFractionTanhFermion.h
Copyright (C) 2015
Author: Peter Boyle <pabobyle@ph.ed.ac.uk>
Author: Peter Boyle <paboyle@ph.ed.ac.uk>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#ifndef OVERLAP_WILSON_PARTFRAC_TANH_FERMION_H
#define OVERLAP_WILSON_PARTFRAC_TANH_FERMION_H

28
lib/qcd/action/fermion/OverlapWilsonPartialFractionZolotarevFermion.h
View File

@ -1,3 +1,31 @@
/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: ./lib/qcd/action/fermion/OverlapWilsonPartialFractionZolotarevFermion.h
Copyright (C) 2015
Author: Peter Boyle <pabobyle@ph.ed.ac.uk>
Author: Peter Boyle <paboyle@ph.ed.ac.uk>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#ifndef OVERLAP_WILSON_PARTFRAC_ZOLOTAREV_FERMION_H
#define OVERLAP_WILSON_PARTFRAC_ZOLOTAREV_FERMION_H

28
lib/qcd/action/fermion/PartialFractionFermion5D.cc
View File

@ -1,3 +1,31 @@
/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: ./lib/qcd/action/fermion/PartialFractionFermion5D.cc
Copyright (C) 2015
Author: Peter Boyle <pabobyle@ph.ed.ac.uk>
Author: Peter Boyle <paboyle@ph.ed.ac.uk>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#include <Grid.h>
namespace Grid {
namespace QCD {

28
lib/qcd/action/fermion/PartialFractionFermion5D.h
View File

@ -1,3 +1,31 @@
/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: ./lib/qcd/action/fermion/PartialFractionFermion5D.h
Copyright (C) 2015
Author: Peter Boyle <pabobyle@ph.ed.ac.uk>
Author: Peter Boyle <paboyle@ph.ed.ac.uk>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#ifndef GRID_QCD_PARTIAL_FRACTION_H
#define GRID_QCD_PARTIAL_FRACTION_H

28
lib/qcd/action/fermion/ScaledShamirFermion.h
View File

@ -1,3 +1,31 @@
/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: ./lib/qcd/action/fermion/ScaledShamirFermion.h
Copyright (C) 2015
Author: Peter Boyle <pabobyle@ph.ed.ac.uk>
Author: Peter Boyle <paboyle@ph.ed.ac.uk>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#ifndef GRID_QCD_SCALED_SHAMIR_FERMION_H
#define GRID_QCD_SCALED_SHAMIR_FERMION_H

28
lib/qcd/action/fermion/ShamirZolotarevFermion.h
View File

@ -1,3 +1,31 @@
/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: ./lib/qcd/action/fermion/ShamirZolotarevFermion.h
Copyright (C) 2015
Author: Peter Boyle <pabobyle@ph.ed.ac.uk>
Author: Peter Boyle <paboyle@ph.ed.ac.uk>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#ifndef GRID_QCD_SHAMIR_ZOLOTAREV_FERMION_H
#define GRID_QCD_SHAMIR_ZOLOTAREV_FERMION_H

31
lib/qcd/action/fermion/WilsonCompressor.h
View File

@ -1,3 +1,32 @@
/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: ./lib/qcd/action/fermion/WilsonCompressor.h
Copyright (C) 2015
Author: Peter Boyle <paboyle@ph.ed.ac.uk>
Author: Peter Boyle <peterboyle@Peters-MacBook-Pro-2.local>
Author: paboyle <paboyle@ph.ed.ac.uk>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#ifndef GRID_QCD_WILSON_COMPRESSOR_H
#define GRID_QCD_WILSON_COMPRESSOR_H
@ -27,7 +56,7 @@ namespace QCD {
{
SiteHalfSpinor ret;
int mudag=mu;
if (dag) {
if (!dag) {
mudag=(mu+Nd)%(2*Nd);
}
switch(mudag) {

116
lib/qcd/action/fermion/WilsonFermion.cc
View File

@ -1,3 +1,33 @@
/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: ./lib/qcd/action/fermion/WilsonFermion.cc
Copyright (C) 2015
Author: Peter Boyle <pabobyle@ph.ed.ac.uk>
Author: Peter Boyle <paboyle@ph.ed.ac.uk>
Author: Peter Boyle <peterboyle@Peters-MacBook-Pro-2.local>
Author: paboyle <paboyle@ph.ed.ac.uk>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#include <Grid.h>
namespace Grid {
@ -253,10 +283,19 @@ PARALLEL_FOR_LOOP
};
template<class Impl>
void WilsonFermion<Impl>::DhopInternal(StencilImpl & st,DoubledGaugeField & U,
const FermionField &in, FermionField &out,int dag) {
const FermionField &in, FermionField &out,int dag)
{
if ( Impl::overlapCommsCompute () ) {
DhopInternalCommsOverlapCompute(st,U,in,out,dag);
} else {
DhopInternalCommsThenCompute(st,U,in,out,dag);
}
}
template<class Impl>
void WilsonFermion<Impl>::DhopInternalCommsThenCompute(StencilImpl & st,DoubledGaugeField & U,
const FermionField &in, FermionField &out,int dag) {
assert((dag==DaggerNo) ||(dag==DaggerYes));
@ -289,10 +328,83 @@ PARALLEL_FOR_LOOP
}
}
};
template<class Impl>
void WilsonFermion<Impl>::DhopInternalCommsOverlapCompute(StencilImpl & st,DoubledGaugeField & U,
const FermionField &in, FermionField &out,int dag) {
assert((dag==DaggerNo) ||(dag==DaggerYes));
Compressor compressor(dag);
std::thread comms_thread = st.HaloExchangeBegin(in,comm_buf,compressor);
comms_thread.join();
bool local = true;
bool nonlocal = false;
if ( dag == DaggerYes ) {
if( HandOptDslash ) {
PARALLEL_FOR_LOOP
for(int sss=0;sss<in._grid->oSites();sss++){
Kernels::DiracOptHandDhopSiteDag(st,U,comm_buf,sss,sss,in,out,local,nonlocal);
}
} else {
PARALLEL_FOR_LOOP
for(int sss=0;sss<in._grid->oSites();sss++){
Kernels::DiracOptDhopSiteDag(st,U,comm_buf,sss,sss,in,out,local,nonlocal);
}
}
} else {
if( HandOptDslash ) {
PARALLEL_FOR_LOOP
for(int sss=0;sss<in._grid->oSites();sss++){
Kernels::DiracOptHandDhopSite(st,U,comm_buf,sss,sss,in,out,local,nonlocal);
}
} else {
PARALLEL_FOR_LOOP
for(int sss=0;sss<in._grid->oSites();sss++){
Kernels::DiracOptDhopSite(st,U,comm_buf,sss,sss,in,out,local,nonlocal);
}
}
}
local = false;
nonlocal = true;
if ( dag == DaggerYes ) {
if( HandOptDslash ) {
PARALLEL_FOR_LOOP
for(int sss=0;sss<in._grid->oSites();sss++){
Kernels::DiracOptHandDhopSiteDag(st,U,comm_buf,sss,sss,in,out,local,nonlocal);
}
} else {
PARALLEL_FOR_LOOP
for(int sss=0;sss<in._grid->oSites();sss++){
Kernels::DiracOptDhopSiteDag(st,U,comm_buf,sss,sss,in,out,local,nonlocal);
}
}
} else {
if( HandOptDslash ) {
PARALLEL_FOR_LOOP
for(int sss=0;sss<in._grid->oSites();sss++){
Kernels::DiracOptHandDhopSite(st,U,comm_buf,sss,sss,in,out,local,nonlocal);
}
} else {
PARALLEL_FOR_LOOP
for(int sss=0;sss<in._grid->oSites();sss++){
Kernels::DiracOptDhopSite(st,U,comm_buf,sss,sss,in,out,local,nonlocal);
}
}
}
};
FermOpTemplateInstantiate(WilsonFermion);
GparityFermOpTemplateInstantiate(WilsonFermion);
}}

44
lib/qcd/action/fermion/WilsonFermion.h
View File

@ -1,3 +1,32 @@
/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: ./lib/qcd/action/fermion/WilsonFermion.h
Copyright (C) 2015
Author: Peter Boyle <pabobyle@ph.ed.ac.uk>
Author: Peter Boyle <paboyle@ph.ed.ac.uk>
Author: paboyle <paboyle@ph.ed.ac.uk>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#ifndef GRID_QCD_WILSON_FERMION_H
#define GRID_QCD_WILSON_FERMION_H
@ -42,10 +71,12 @@ namespace Grid {
/////////////////////////////////////////////////////////
void Meooe(const FermionField &in, FermionField &out) ;
void MeooeDag(const FermionField &in, FermionField &out) ;
void Mooee(const FermionField &in, FermionField &out) ;
void MooeeDag(const FermionField &in, FermionField &out) ;
void MooeeInv(const FermionField &in, FermionField &out) ;
void MooeeInvDag(const FermionField &in, FermionField &out) ;
// allow override for twisted mass and clover
virtual void Mooee(const FermionField &in, FermionField &out) ;
virtual void MooeeDag(const FermionField &in, FermionField &out) ;
virtual void MooeeInv(const FermionField &in, FermionField &out) ;
virtual void MooeeInvDag(const FermionField &in, FermionField &out) ;
////////////////////////
// Derivative interface
@ -83,6 +114,11 @@ namespace Grid {
void DhopInternal(StencilImpl & st,DoubledGaugeField & U,
const FermionField &in, FermionField &out,int dag) ;
void DhopInternalCommsThenCompute(StencilImpl & st,DoubledGaugeField & U,
const FermionField &in, FermionField &out,int dag) ;
void DhopInternalCommsOverlapCompute(StencilImpl & st,DoubledGaugeField & U,
const FermionField &in, FermionField &out,int dag) ;
// Constructor
WilsonFermion(GaugeField &_Umu,

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