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Cleaned up for Linux

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This commit is contained in:
Peter Boyle 2015-05-05 22:09:22 +01:00
parent cb4b82b09f
commit 7b0dd6c5d6
10 changed files with 3378 additions and 2793 deletions
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Makefile.in
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@ -1,8 +1,9 @@
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# 2003, 2004, 2005, 2006, 2007, 2008, 2009 Free Software Foundation,
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@ -193,14 +96,10 @@ am__relativize = \
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@ -240,7 +139,6 @@ PACKAGE_BUGREPORT = @PACKAGE_BUGREPORT@
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xz -dc $(distdir).tar.xz | $(am__untar) ;;\ xz -dc $(distdir).tar.xz | $(am__untar) ;;\
*.tar.Z*) \ *.tar.Z*) \
@ -561,19 +486,17 @@ distcheck: dist
*.zip*) \ *.zip*) \
unzip $(distdir).zip ;;\ unzip $(distdir).zip ;;\
esac esac
chmod -R a-w $(distdir) chmod -R a-w $(distdir); chmod u+w $(distdir)
chmod u+w $(distdir) mkdir $(distdir)/_build
mkdir $(distdir)/_build $(distdir)/_build/sub $(distdir)/_inst mkdir $(distdir)/_inst
chmod a-w $(distdir) chmod a-w $(distdir)
test -d $(distdir)/_build || exit 0; \ test -d $(distdir)/_build || exit 0; \
dc_install_base=`$(am__cd) $(distdir)/_inst && pwd | sed -e 's,^[^:\\/]:[\\/],/,'` \ dc_install_base=`$(am__cd) $(distdir)/_inst && pwd | sed -e 's,^[^:\\/]:[\\/],/,'` \
&& dc_destdir="$${TMPDIR-/tmp}/am-dc-$$$$/" \ && dc_destdir="$${TMPDIR-/tmp}/am-dc-$$$$/" \
&& am__cwd=`pwd` \ && am__cwd=`pwd` \
&& $(am__cd) $(distdir)/_build/sub \ && $(am__cd) $(distdir)/_build \
&& ../../configure \ && ../configure --srcdir=.. --prefix="$$dc_install_base" \
$(AM_DISTCHECK_CONFIGURE_FLAGS) \
$(DISTCHECK_CONFIGURE_FLAGS) \ $(DISTCHECK_CONFIGURE_FLAGS) \
--srcdir=../.. --prefix="$$dc_install_base" \
&& $(MAKE) $(AM_MAKEFLAGS) \ && $(MAKE) $(AM_MAKEFLAGS) \
&& $(MAKE) $(AM_MAKEFLAGS) dvi \ && $(MAKE) $(AM_MAKEFLAGS) dvi \
&& $(MAKE) $(AM_MAKEFLAGS) check \ && $(MAKE) $(AM_MAKEFLAGS) check \
@ -596,21 +519,13 @@ distcheck: dist
&& $(MAKE) $(AM_MAKEFLAGS) distcleancheck \ && $(MAKE) $(AM_MAKEFLAGS) distcleancheck \
&& cd "$$am__cwd" \ && cd "$$am__cwd" \
|| exit 1 || exit 1
$(am__post_remove_distdir) $(am__remove_distdir)
@(echo "$(distdir) archives ready for distribution: "; \ @(echo "$(distdir) archives ready for distribution: "; \
list='$(DIST_ARCHIVES)'; for i in $$list; do echo $$i; done) | \ list='$(DIST_ARCHIVES)'; for i in $$list; do echo $$i; done) | \
sed -e 1h -e 1s/./=/g -e 1p -e 1x -e '$$p' -e '$$x' sed -e 1h -e 1s/./=/g -e 1p -e 1x -e '$$p' -e '$$x'
distuninstallcheck: distuninstallcheck:
@test -n '$(distuninstallcheck_dir)' || { \ @$(am__cd) '$(distuninstallcheck_dir)' \
echo 'ERROR: trying to run $@ with an empty' \ && test `$(distuninstallcheck_listfiles) | wc -l` -le 1 \
'$$(distuninstallcheck_dir)' >&2; \
exit 1; \
}; \
$(am__cd) '$(distuninstallcheck_dir)' || { \
echo 'ERROR: cannot chdir into $(distuninstallcheck_dir)' >&2; \
exit 1; \
}; \
test `$(am__distuninstallcheck_listfiles) | wc -l` -eq 0 \
|| { echo "ERROR: files left after uninstall:" ; \ || { echo "ERROR: files left after uninstall:" ; \
if test -n "$(DESTDIR)"; then \ if test -n "$(DESTDIR)"; then \
echo " (check DESTDIR support)"; \ echo " (check DESTDIR support)"; \
@ -641,15 +556,10 @@ install-am: all-am
installcheck: installcheck-recursive installcheck: installcheck-recursive
install-strip: install-strip:
if test -z '$(STRIP)'; then \
$(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
install; \ `test -z '$(STRIP)' || \
else \ echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install
$(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
"INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'" install; \
fi
mostlyclean-generic: mostlyclean-generic:
clean-generic: clean-generic:
@ -730,24 +640,23 @@ ps-am:
uninstall-am: uninstall-am:
.MAKE: $(am__recursive_targets) install-am install-strip .MAKE: $(RECURSIVE_CLEAN_TARGETS) $(RECURSIVE_TARGETS) ctags-recursive \
install-am install-strip tags-recursive
.PHONY: $(am__recursive_targets) CTAGS GTAGS TAGS all all-am \ .PHONY: $(RECURSIVE_CLEAN_TARGETS) $(RECURSIVE_TARGETS) CTAGS GTAGS \
am--refresh check check-am clean clean-cscope clean-generic \ all all-am am--refresh check check-am clean clean-generic \
cscope cscopelist-am ctags ctags-am dist dist-all dist-bzip2 \ ctags ctags-recursive dist dist-all dist-bzip2 dist-gzip \
dist-gzip dist-lzip dist-shar dist-tarZ dist-xz dist-zip \ dist-lzma dist-shar dist-tarZ dist-xz dist-zip distcheck \
distcheck distclean distclean-generic distclean-tags \ distclean distclean-generic distclean-tags distcleancheck \
distcleancheck distdir distuninstallcheck dvi dvi-am html \ distdir distuninstallcheck dvi dvi-am html html-am info \
html-am info info-am install install-am install-data \ info-am install install-am install-data install-data-am \
install-data-am install-dvi install-dvi-am install-exec \ install-dvi install-dvi-am install-exec install-exec-am \
install-exec-am install-html install-html-am install-info \ install-html install-html-am install-info install-info-am \
install-info-am install-man install-pdf install-pdf-am \ install-man install-pdf install-pdf-am install-ps \
install-ps install-ps-am install-strip installcheck \ install-ps-am install-strip installcheck installcheck-am \
installcheck-am installdirs installdirs-am maintainer-clean \ installdirs installdirs-am maintainer-clean \
maintainer-clean-generic mostlyclean mostlyclean-generic pdf \ maintainer-clean-generic mostlyclean mostlyclean-generic pdf \
pdf-am ps ps-am tags tags-am uninstall uninstall-am pdf-am ps ps-am tags tags-recursive uninstall uninstall-am
.PRECIOUS: Makefile
# Tell versions [3.59,3.63) of GNU make to not export all variables. # Tell versions [3.59,3.63) of GNU make to not export all variables.

4
TODO
View File

@ -2,9 +2,7 @@
- use protocol buffers? replace xmlReader/Writer ec.. - use protocol buffers? replace xmlReader/Writer ec..
- Binary use htonll, htonl - Binary use htonll, htonl
* Stencil -- do the permute for locally permuted in halo exchange. * Stencil -- DONE
- BUG cshift mpi; the "s" indexing is weird in the Cshift_comms_simd
as simd_layout or not is confusing
* Reduce implemention is poor * Reduce implemention is poor
* Bug in SeedFixedIntegers gives same output on each site. * Bug in SeedFixedIntegers gives same output on each site.

575
aclocal.m4 vendored
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File diff suppressed because it is too large Load Diff

24
benchmarks/Grid_memory_bandwidth.cc
View File

@ -22,7 +22,7 @@ int main (int argc, char ** argv)
std::cout << " L "<<"\t\t"<<"bytes"<<"\t\t"<<"GB/s"<<std::endl; std::cout << " L "<<"\t\t"<<"bytes"<<"\t\t"<<"GB/s"<<std::endl;
std::cout << "----------------------------------------------------------"<<std::endl; std::cout << "----------------------------------------------------------"<<std::endl;
for(int lat=4;lat<=24;lat+=4){ for(int lat=4;lat<=32;lat+=4){
std::vector<int> latt_size ({lat,lat,lat,lat}); std::vector<int> latt_size ({lat,lat,lat,lat});
@ -43,10 +43,10 @@ int main (int argc, char ** argv)
axpy(z,a,x,y); axpy(z,a,x,y);
} }
double stop=usecond(); double stop=usecond();
double time = (stop-start)/Nloop/1000; double time = (stop-start)/Nloop*1000;
double bytes=3*lat*lat*lat*lat*Nvec*sizeof(Real); double bytes=3*lat*lat*lat*lat*Nvec*sizeof(Real);
std::cout<<std::setprecision(3) << lat<<"\t\t"<<bytes<<"\t\t"<<bytes/time<<std::endl; std::cout<<std::setprecision(2) << lat<<"\t\t"<<bytes<<"\t\t"<<bytes/time<<std::endl;
} }
@ -57,7 +57,7 @@ int main (int argc, char ** argv)
std::cout << "----------------------------------------------------------"<<std::endl; std::cout << "----------------------------------------------------------"<<std::endl;
for(int lat=4;lat<=24;lat+=4){ for(int lat=4;lat<=32;lat+=4){
std::vector<int> latt_size ({lat,lat,lat,lat}); std::vector<int> latt_size ({lat,lat,lat,lat});
@ -76,11 +76,11 @@ int main (int argc, char ** argv)
z=a*x+y; z=a*x+y;
} }
double stop=usecond(); double stop=usecond();
double time = (stop-start)/Nloop/1000; double time = (stop-start)/Nloop*1000;
double effbytes=3*lat*lat*lat*lat*Nvec*sizeof(Real); double effbytes=3*lat*lat*lat*lat*Nvec*sizeof(Real);
double bytes=5*lat*lat*lat*lat*Nvec*sizeof(Real); double bytes=5*lat*lat*lat*lat*Nvec*sizeof(Real);
std::cout<<std::setprecision(3) << lat<<"\t\t"<<bytes<<"\t\t"<<bytes/time<<"\t\t"<<effbytes/time<<std::endl; std::cout<<std::setprecision(2) << lat<<"\t\t"<<bytes<<"\t\t"<<bytes/time<<"\t\t"<<effbytes/time<<std::endl;
} }
@ -89,7 +89,7 @@ int main (int argc, char ** argv)
std::cout << "===================================================================================================="<<std::endl; std::cout << "===================================================================================================="<<std::endl;
std::cout << " L "<<"\t\t"<<"bytes"<<"\t\t"<<"GB/s"<<std::endl; std::cout << " L "<<"\t\t"<<"bytes"<<"\t\t"<<"GB/s"<<std::endl;
for(int lat=4;lat<=24;lat+=4){ for(int lat=4;lat<=32;lat+=4){
std::vector<int> latt_size ({lat,lat,lat,lat}); std::vector<int> latt_size ({lat,lat,lat,lat});
@ -108,10 +108,10 @@ int main (int argc, char ** argv)
x=a*z; x=a*z;
} }
double stop=usecond(); double stop=usecond();
double time = (stop-start)/Nloop/1000; double time = (stop-start)/Nloop*1000;
double bytes=2*lat*lat*lat*lat*Nvec*sizeof(Real); double bytes=2*lat*lat*lat*lat*Nvec*sizeof(Real);
std::cout <<std::setprecision(3) << lat<<"\t\t"<<bytes<<"\t\t"<<bytes/time<<std::endl; std::cout <<std::setprecision(2) << lat<<"\t\t"<<bytes<<"\t\t"<<bytes/time<<std::endl;
} }
@ -121,7 +121,7 @@ int main (int argc, char ** argv)
std::cout << " L "<<"\t\t"<<"bytes"<<"\t\t"<<"GB/s"<<std::endl; std::cout << " L "<<"\t\t"<<"bytes"<<"\t\t"<<"GB/s"<<std::endl;
std::cout << "----------------------------------------------------------"<<std::endl; std::cout << "----------------------------------------------------------"<<std::endl;
for(int lat=4;lat<=24;lat+=4){ for(int lat=4;lat<=32;lat+=4){
std::vector<int> latt_size ({lat,lat,lat,lat}); std::vector<int> latt_size ({lat,lat,lat,lat});
@ -140,10 +140,10 @@ int main (int argc, char ** argv)
nn=norm2(x); nn=norm2(x);
} }
double stop=usecond(); double stop=usecond();
double time = (stop-start)/Nloop/1000; double time = (stop-start)/Nloop*1000;
double bytes=lat*lat*lat*lat*Nvec*sizeof(Real); double bytes=lat*lat*lat*lat*Nvec*sizeof(Real);
std::cout<<std::setprecision(3) << lat<<"\t\t"<<bytes<<"\t\t"<<bytes/time<<std::endl; std::cout<<std::setprecision(2) << lat<<"\t\t"<<bytes<<"\t\t"<<bytes/time<<std::endl;
} }

4855
configure vendored
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File diff suppressed because it is too large Load Diff

17
lib/Grid_config.h
View File

@ -11,21 +11,21 @@
/* #undef AVX512 */ /* #undef AVX512 */
/* GRID_COMMS_MPI */ /* GRID_COMMS_MPI */
#define GRID_COMMS_MPI 1 /* #undef GRID_COMMS_MPI */
/* GRID_COMMS_NONE */ /* GRID_COMMS_NONE */
/* #undef GRID_COMMS_NONE */ #define GRID_COMMS_NONE 1
/* Define to 1 if you have the declaration of `be64toh', and to 0 if you /* Define to 1 if you have the declaration of `be64toh', and to 0 if you
don't. */ don't. */
#define HAVE_DECL_BE64TOH 0 #define HAVE_DECL_BE64TOH 1
/* Define to 1 if you have the declaration of `ntohll', and to 0 if you don't. /* Define to 1 if you have the declaration of `ntohll', and to 0 if you don't.
*/ */
#define HAVE_DECL_NTOHLL 1 #define HAVE_DECL_NTOHLL 0
/* Define to 1 if you have the <endian.h> header file. */ /* Define to 1 if you have the <endian.h> header file. */
/* #undef HAVE_ENDIAN_H */ #define HAVE_ENDIAN_H 1
/* Define to 1 if you have the `gettimeofday' function. */ /* Define to 1 if you have the `gettimeofday' function. */
#define HAVE_GETTIMEOFDAY 1 #define HAVE_GETTIMEOFDAY 1
@ -34,10 +34,10 @@
#define HAVE_INTTYPES_H 1 #define HAVE_INTTYPES_H 1
/* Define to 1 if you have the <malloc.h> header file. */ /* Define to 1 if you have the <malloc.h> header file. */
/* #undef HAVE_MALLOC_H */ #define HAVE_MALLOC_H 1
/* Define to 1 if you have the <malloc/malloc.h> header file. */ /* Define to 1 if you have the <malloc/malloc.h> header file. */
#define HAVE_MALLOC_MALLOC_H 1 /* #undef HAVE_MALLOC_MALLOC_H */
/* Define to 1 if you have the <memory.h> header file. */ /* Define to 1 if you have the <memory.h> header file. */
#define HAVE_MEMORY_H 1 #define HAVE_MEMORY_H 1
@ -78,9 +78,6 @@
/* Define to the one symbol short name of this package. */ /* Define to the one symbol short name of this package. */
#define PACKAGE_TARNAME "grid" #define PACKAGE_TARNAME "grid"
/* Define to the home page for this package. */
#define PACKAGE_URL ""
/* Define to the version of this package. */ /* Define to the version of this package. */
#define PACKAGE_VERSION "1.0" #define PACKAGE_VERSION "1.0"

3
lib/Grid_config.h.in
View File

@ -77,9 +77,6 @@
/* Define to the one symbol short name of this package. */ /* Define to the one symbol short name of this package. */
#undef PACKAGE_TARNAME #undef PACKAGE_TARNAME
/* Define to the home page for this package. */
#undef PACKAGE_URL
/* Define to the version of this package. */ /* Define to the version of this package. */
#undef PACKAGE_VERSION #undef PACKAGE_VERSION

2
lib/Grid_init.cc
View File

@ -81,7 +81,7 @@ void * Grid_backtrace_buffer[_NBACKTRACE];
void Grid_sa_signal_handler(int sig,siginfo_t *si,void * ptr) void Grid_sa_signal_handler(int sig,siginfo_t *si,void * ptr)
{ {
printf("Caught signal %d\n",si->si_signo); printf("Caught signal %d\n",si->si_signo);
printf(" mem address %llx\n",(uint64_t)si->si_addr); printf(" mem address %lx\n",(uint64_t)si->si_addr);
printf(" code %d\n",si->si_code); printf(" code %d\n",si->si_code);
#ifdef __X86_64 #ifdef __X86_64

2
lib/qcd/Grid_qcd_wilson_dop.cc
View File

@ -253,7 +253,7 @@ void WilsonMatrix::Dhop(const LatticeFermion &in, LatticeFermion &out)
mult(&Uchi(),&Umu._odata[ss](Tm),&chi()); mult(&Uchi(),&Umu._odata[ss](Tm),&chi());
accumReconTm(result,Uchi); accumReconTm(result,Uchi);
out._odata[ss] = result; vstream(out._odata[ss],result);
} }
} }

8
tests/Grid_gamma.cc
View File

@ -39,16 +39,16 @@ int main (int argc, char ** argv)
std::cout << " Is pod " << std::is_pod<SpinVector>::value << std::endl; std::cout << " Is pod " << std::is_pod<SpinVector>::value << std::endl;
std::cout << " Is pod double " << std::is_pod<double>::value << std::endl; std::cout << " Is pod double " << std::is_pod<double>::value << std::endl;
std::cout << " Is pod ComplexF " << std::is_pod<ComplexF>::value << std::endl; std::cout << " Is pod ComplexF " << std::is_pod<ComplexF>::value << std::endl;
std::cout << " Is triv double " << std::is_trivially_default_constructible<double>::value << std::endl; std::cout << " Is triv double " << std::has_trivial_default_constructor<double>::value << std::endl;
std::cout << " Is triv ComplexF " << std::is_trivially_default_constructible<ComplexF>::value << std::endl; std::cout << " Is triv ComplexF " << std::has_trivial_default_constructor<ComplexF>::value << std::endl;
std::cout << " Is pod Scalar<double> " << std::is_pod<iScalar<double> >::value << std::endl; std::cout << " Is pod Scalar<double> " << std::is_pod<iScalar<double> >::value << std::endl;
std::cout << " Is pod Scalar<ComplexF> " << std::is_pod<iScalar<ComplexF> >::value << std::endl; std::cout << " Is pod Scalar<ComplexF> " << std::is_pod<iScalar<ComplexF> >::value << std::endl;
std::cout << " Is pod Scalar<vComplexF> " << std::is_pod<iScalar<vComplexF> >::value << std::endl; std::cout << " Is pod Scalar<vComplexF> " << std::is_pod<iScalar<vComplexF> >::value << std::endl;
std::cout << " Is pod Scalar<vComplexD> " << std::is_pod<iScalar<vComplexD> >::value << std::endl; std::cout << " Is pod Scalar<vComplexD> " << std::is_pod<iScalar<vComplexD> >::value << std::endl;
std::cout << " Is pod Scalar<vRealF> " << std::is_pod<iScalar<vRealF> >::value << std::endl; std::cout << " Is pod Scalar<vRealF> " << std::is_pod<iScalar<vRealF> >::value << std::endl;
std::cout << " Is pod Scalar<vRealD> " << std::is_pod<iScalar<vRealD> >::value << std::endl; std::cout << " Is pod Scalar<vRealD> " << std::is_pod<iScalar<vRealD> >::value << std::endl;
std::cout << " Is triv Scalar<double> " <<std::is_trivially_default_constructible<iScalar<double> >::value << std::endl; std::cout << " Is triv Scalar<double> " <<std::has_trivial_default_constructor<iScalar<double> >::value << std::endl;
std::cout << " Is triv Scalar<vComplexD> "<<std::is_trivially_default_constructible<iScalar<vComplexD> >::value << std::endl; std::cout << " Is triv Scalar<vComplexD> "<<std::has_trivial_default_constructor<iScalar<vComplexD> >::value << std::endl;
for(int a=0;a<Ns;a++){ for(int a=0;a<Ns;a++){
ident()(a,a) = 1.0; ident()(a,a) = 1.0;