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Merge branch 'develop' into release/v0.6.0

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# Conflicts:
#	tests/core/Test_fft_gfix.cc
This commit is contained in:
Antonin Portelli
2016-11-08 16:53:42 +00:00
parent 50d277d8d9 65bcf281d0
commit 8a5e3a917c
5 changed files with 37 additions and 77 deletions
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2
Makefile.am
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@@ -3,7 +3,7 @@ SUBDIRS = lib benchmarks tests
.PHONY: tests
tests:
tests: all
$(MAKE) -C tests tests
AM_CXXFLAGS += -I$(top_builddir)/include

44
README
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@@ -1,44 +0,0 @@
This library provides data parallel C++ container classes with internal memory layout
that is transformed to map efficiently to SIMD architectures. CSHIFT facilities
are provided, similar to HPF and cmfortran, and user control is given over the mapping of
array indices to both MPI tasks and SIMD processing elements.
* Identically shaped arrays then be processed with perfect data parallelisation.
* Such identically shapped arrays are called conformable arrays.
The transformation is based on the observation that Cartesian array processing involves
identical processing to be performed on different regions of the Cartesian array.
The library will (eventually) both geometrically decompose into MPI tasks and across SIMD lanes.
Data parallel array operations can then be specified with a SINGLE data parallel paradigm, but
optimally use MPI, OpenMP and SIMD parallelism under the hood. This is a significant simplification
for most programmers.
The layout transformations are parametrised by the SIMD vector length. This adapts according to the architecture.
Presently SSE2 (128 bit) AVX, AVX2 (256 bit) and IMCI and AVX512 (512 bit) targets are supported.
These are presented as
vRealF, vRealD, vComplexF, vComplexD
internal vector data types. These may be useful in themselves for other programmers.
The corresponding scalar types are named
RealF, RealD, ComplexF, ComplexD
MPI parallelism is UNIMPLEMENTED and for now only OpenMP and SIMD parallelism is present in the library.
You can give `configure' initial values for configuration parameters
by setting variables in the command line or in the environment. Here
is are examples:
./configure CXX=clang++ CXXFLAGS="-std=c++11 -O3 -msse4" --enable-simd=SSE4
./configure CXX=clang++ CXXFLAGS="-std=c++11 -O3 -mavx" --enable-simd=AVX1
./configure CXX=clang++ CXXFLAGS="-std=c++11 -O3 -mavx2" --enable-simd=AVX2
./configure CXX=icpc CXXFLAGS="-std=c++11 -O3 -mmic" --enable-simd=AVX512 --host=none

2
README.md
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@@ -126,7 +126,7 @@ If you want to build all the tests at once just use `make tests`.
### Possible communication interfaces
The following options can be use with the `--enable-simd=` option to target different communication interfaces:
The following options can be use with the `--enable-comms=` option to target different communication interfaces:
| `<comm>` | Description |
| -------------- | ------------------------------------------------------------- |

4
lib/FFT.h
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@@ -30,8 +30,12 @@ Author: Peter Boyle <paboyle@ph.ed.ac.uk>
#define _GRID_FFT_H_
#ifdef HAVE_FFTW
#ifdef USE_MKL
#include <fftw/fftw3.h>
#else
#include <fftw3.h>
#endif
#endif
namespace Grid {

60
tests/core/Test_fft_gfix.cc
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@@ -42,7 +42,7 @@ class FourierAcceleratedGaugeFixer : public Gimpl {
static void GaugeLinkToLieAlgebraField(const std::vector<GaugeMat> &U,std::vector<GaugeMat> &A) {
for(int mu=0;mu<Nd;mu++){
// ImplComplex cmi(0.0,-1.0);
ComplexD cmi(0.0,-1.0);
Complex cmi(0.0,-1.0);
A[mu] = Ta(U[mu]) * cmi;
}
}
@@ -52,13 +52,13 @@ class FourierAcceleratedGaugeFixer : public Gimpl {
dmuAmu = dmuAmu + A[mu] - Cshift(A[mu],mu,-1);
}
}
static void SteepestDescentGaugeFix(GaugeLorentz &Umu,RealD & alpha,int maxiter,RealD Omega_tol, RealD Phi_tol) {
static void SteepestDescentGaugeFix(GaugeLorentz &Umu,Real & alpha,int maxiter,Real Omega_tol, Real Phi_tol) {
GridBase *grid = Umu._grid;
RealD org_plaq =WilsonLoops<Gimpl>::avgPlaquette(Umu);
RealD org_link_trace=WilsonLoops<Gimpl>::linkTrace(Umu);
RealD old_trace = org_link_trace;
RealD trG;
Real org_plaq =WilsonLoops<Gimpl>::avgPlaquette(Umu);
Real org_link_trace=WilsonLoops<Gimpl>::linkTrace(Umu);
Real old_trace = org_link_trace;
Real trG;
std::vector<GaugeMat> U(Nd,grid);
GaugeMat dmuAmu(grid);
@@ -71,13 +71,13 @@ class FourierAcceleratedGaugeFixer : public Gimpl {
// Monitor progress and convergence test
// infrequently to minimise cost overhead
if ( i %20 == 0 ) {
RealD plaq =WilsonLoops<Gimpl>::avgPlaquette(Umu);
RealD link_trace=WilsonLoops<Gimpl>::linkTrace(Umu);
Real plaq =WilsonLoops<Gimpl>::avgPlaquette(Umu);
Real link_trace=WilsonLoops<Gimpl>::linkTrace(Umu);
std::cout << GridLogMessage << " Iteration "<<i<< " plaq= "<<plaq<< " dmuAmu " << norm2(dmuAmu)<< std::endl;
RealD Phi = 1.0 - old_trace / link_trace ;
RealD Omega= 1.0 - trG;
Real Phi = 1.0 - old_trace / link_trace ;
Real Omega= 1.0 - trG;
std::cout << GridLogMessage << " Iteration "<<i<< " Phi= "<<Phi<< " Omega= " << Omega<< " trG " << trG <<std::endl;
@@ -91,7 +91,7 @@ class FourierAcceleratedGaugeFixer : public Gimpl {
}
}
};
static RealD SteepestDescentStep(std::vector<GaugeMat> &U,RealD & alpha, GaugeMat & dmuAmu) {
static Real SteepestDescentStep(std::vector<GaugeMat> &U,Real & alpha, GaugeMat & dmuAmu) {
GridBase *grid = U[0]._grid;
std::vector<GaugeMat> A(Nd,grid);
@@ -101,19 +101,19 @@ class FourierAcceleratedGaugeFixer : public Gimpl {
ExpiAlphaDmuAmu(A,g,alpha,dmuAmu);
RealD vol = grid->gSites();
RealD trG = TensorRemove(sum(trace(g))).real()/vol/Nc;
Real vol = grid->gSites();
Real trG = TensorRemove(sum(trace(g))).real()/vol/Nc;
SU<Nc>::GaugeTransform(U,g);
return trG;
}
static RealD FourierAccelSteepestDescentStep(std::vector<GaugeMat> &U,RealD & alpha, GaugeMat & dmuAmu) {
static Real FourierAccelSteepestDescentStep(std::vector<GaugeMat> &U,Real & alpha, GaugeMat & dmuAmu) {
GridBase *grid = U[0]._grid;
RealD vol = grid->gSites();
Real vol = grid->gSites();
FFT theFFT((GridCartesian *)grid);
@@ -139,13 +139,13 @@ class FourierAcceleratedGaugeFixer : public Gimpl {
std::vector<int> coor(grid->_ndimension,0);
for(int mu=0;mu<Nd;mu++) {
RealD TwoPiL = M_PI * 2.0/ latt_size[mu];
Real TwoPiL = M_PI * 2.0/ latt_size[mu];
LatticeCoordinate(pmu,mu);
pmu = TwoPiL * pmu ;
psq = psq + 4.0*sin(pmu*0.5)*sin(pmu*0.5);
}
ComplexD psqMax(16.0);
Complex psqMax(16.0);
Fp = psqMax*one/psq;
static int once;
@@ -160,20 +160,20 @@ class FourierAcceleratedGaugeFixer : public Gimpl {
theFFT.FFT_all_dim(dmuAmu,dmuAmu_p,FFT::backward);
GaugeMat ciadmam(grid);
ComplexD cialpha(0.0,-alpha);
Complex cialpha(0.0,-alpha);
ciadmam = dmuAmu*cialpha;
SU<Nc>::taExp(ciadmam,g);
RealD trG = TensorRemove(sum(trace(g))).real()/vol/Nc;
Real trG = TensorRemove(sum(trace(g))).real()/vol/Nc;
SU<Nc>::GaugeTransform(U,g);
return trG;
}
static void ExpiAlphaDmuAmu(const std::vector<GaugeMat> &A,GaugeMat &g,RealD & alpha, GaugeMat &dmuAmu) {
static void ExpiAlphaDmuAmu(const std::vector<GaugeMat> &A,GaugeMat &g,Real & alpha, GaugeMat &dmuAmu) {
GridBase *grid = g._grid;
ComplexD cialpha(0.0,-alpha);
Complex cialpha(0.0,-alpha);
GaugeMat ciadmam(grid);
DmuAmu(A,dmuAmu);
ciadmam = dmuAmu*cialpha;
@@ -193,11 +193,11 @@ class FourierAcceleratedGaugeFixer : public Gimpl {
ComplexField pha(grid);
GaugeMat Apha(grid);
ComplexD ci(0.0,1.0);
Complex ci(0.0,1.0);
for(int mu=0;mu<Nd;mu++){
RealD TwoPiL = M_PI * 2.0/ latt_size[mu];
Real TwoPiL = M_PI * 2.0/ latt_size[mu];
LatticeCoordinate(pmu,mu);
pmu = TwoPiL * pmu ;
pha = exp(pmu * (0.5 *ci)); // e(ipmu/2) since Amu(x+mu/2)
@@ -213,14 +213,14 @@ class FourierAcceleratedGaugeFixer : public Gimpl {
ComplexField pmu(grid);
ComplexField pha(grid);
ComplexD ci(0.0,1.0);
Complex ci(0.0,1.0);
// Sign convention for FFTW calls:
// A(x)= Sum_p e^ipx A(p) / V
// A(p)= Sum_p e^-ipx A(x)
for(int mu=0;mu<Nd;mu++){
RealD TwoPiL = M_PI * 2.0/ latt_size[mu];
Real TwoPiL = M_PI * 2.0/ latt_size[mu];
LatticeCoordinate(pmu,mu);
pmu = TwoPiL * pmu ;
pha = exp(-pmu * (0.5 *ci)); // e(+ipmu/2) since Amu(x+mu/2)
@@ -241,7 +241,7 @@ int main (int argc, char ** argv)
int threads = GridThread::GetThreads();
std::vector<int> latt_size = GridDefaultLatt();
std::vector<int> simd_layout( { vComplexD::Nsimd(),1,1,1});
std::vector<int> simd_layout( { vComplex::Nsimd(),1,1,1});
std::vector<int> mpi_layout = GridDefaultMpi();
int vol = 1;
@@ -270,16 +270,16 @@ int main (int argc, char ** argv)
Uorg=Umu;
SU3::RandomGaugeTransform(pRNG,Umu,g); // Unit gauge
RealD plaq=WilsonLoops<PeriodicGimplF>::avgPlaquette(Umu);
Real plaq=WilsonLoops<PeriodicGimplR>::avgPlaquette(Umu);
std::cout << " Initial plaquette "<<plaq << std::endl;
RealD alpha=0.1;
FourierAcceleratedGaugeFixer<PeriodicGimplF>::SteepestDescentGaugeFix(Umu,alpha,10000,1.0e-10, 1.0e-10);
Real alpha=0.1;
FourierAcceleratedGaugeFixer<PeriodicGimplR>::SteepestDescentGaugeFix(Umu,alpha,10000,1.0e-10, 1.0e-10);
plaq=WilsonLoops<PeriodicGimplF>::avgPlaquette(Umu);
plaq=WilsonLoops<PeriodicGimplR>::avgPlaquette(Umu);
std::cout << " Final plaquette "<<plaq << std::endl;
Uorg = Uorg - Umu;