mirror of
https://github.com/paboyle/Grid.git
synced 2025-06-14 22:07:05 +01:00
Merge branch 'develop' into feature/hmc_generalise
This commit is contained in:
Guido Cossu
@ -1,4 +1,4 @@
|
||||
/*************************************************************************************
|
||||
/*************************************************************************************
|
||||
|
||||
Grid physics library, www.github.com/paboyle/Grid
|
||||
|
||||
@ -6,9 +6,9 @@
|
||||
|
||||
Copyright (C) 2015
|
||||
|
||||
Author: Matt Spraggs <matthew.spraggs@gmail.com>
|
||||
Author: Peter Boyle <paboyle@ph.ed.ac.uk>
|
||||
Author: paboyle <paboyle@ph.ed.ac.uk>
|
||||
Author: Matt Spraggs <matthew.spraggs@gmail.com>
|
||||
Author: Peter Boyle <paboyle@ph.ed.ac.uk>
|
||||
Author: paboyle <paboyle@ph.ed.ac.uk>
|
||||
|
||||
This program is free software; you can redistribute it and/or modify
|
||||
it under the terms of the GNU General Public License as published by
|
||||
@ -25,8 +25,8 @@ Author: paboyle <paboyle@ph.ed.ac.uk>
|
||||
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
|
||||
|
||||
See the full license in the file "LICENSE" in the top level distribution directory
|
||||
*************************************************************************************/
|
||||
/* END LEGAL */
|
||||
*************************************************************************************/
|
||||
/* END LEGAL */
|
||||
#ifndef GRID_NERSC_IO_H
|
||||
#define GRID_NERSC_IO_H
|
||||
|
||||
@ -41,92 +41,92 @@ Author: paboyle <paboyle@ph.ed.ac.uk>
|
||||
#include <pwd.h>
|
||||
|
||||
namespace Grid {
|
||||
namespace QCD {
|
||||
namespace QCD {
|
||||
|
||||
using namespace Grid;
|
||||
using namespace Grid;
|
||||
|
||||
////////////////////////////////////////////////////////////////////////////////
|
||||
// Some data types for intermediate storage
|
||||
////////////////////////////////////////////////////////////////////////////////
|
||||
template<typename vtype> using iLorentzColour2x3 = iVector<iVector<iVector<vtype, Nc>, 2>, 4 >;
|
||||
////////////////////////////////////////////////////////////////////////////////
|
||||
// Some data types for intermediate storage
|
||||
////////////////////////////////////////////////////////////////////////////////
|
||||
template<typename vtype> using iLorentzColour2x3 = iVector<iVector<iVector<vtype, Nc>, 2>, 4 >;
|
||||
|
||||
typedef iLorentzColour2x3<Complex> LorentzColour2x3;
|
||||
typedef iLorentzColour2x3<ComplexF> LorentzColour2x3F;
|
||||
typedef iLorentzColour2x3<ComplexD> LorentzColour2x3D;
|
||||
typedef iLorentzColour2x3<Complex> LorentzColour2x3;
|
||||
typedef iLorentzColour2x3<ComplexF> LorentzColour2x3F;
|
||||
typedef iLorentzColour2x3<ComplexD> LorentzColour2x3D;
|
||||
|
||||
////////////////////////////////////////////////////////////////////////////////
|
||||
// header specification/interpretation
|
||||
////////////////////////////////////////////////////////////////////////////////
|
||||
class NerscField {
|
||||
public:
|
||||
// header strings (not in order)
|
||||
int dimension[4];
|
||||
std::string boundary[4];
|
||||
int data_start;
|
||||
std::string hdr_version;
|
||||
std::string storage_format;
|
||||
// Checks on data
|
||||
double link_trace;
|
||||
double plaquette;
|
||||
uint32_t checksum;
|
||||
unsigned int sequence_number;
|
||||
std::string data_type;
|
||||
std::string ensemble_id ;
|
||||
std::string ensemble_label ;
|
||||
std::string creator ;
|
||||
std::string creator_hardware ;
|
||||
std::string creation_date ;
|
||||
std::string archive_date ;
|
||||
std::string floating_point;
|
||||
};
|
||||
////////////////////////////////////////////////////////////////////////////////
|
||||
// header specification/interpretation
|
||||
////////////////////////////////////////////////////////////////////////////////
|
||||
class NerscField {
|
||||
public:
|
||||
// header strings (not in order)
|
||||
int dimension[4];
|
||||
std::string boundary[4];
|
||||
int data_start;
|
||||
std::string hdr_version;
|
||||
std::string storage_format;
|
||||
// Checks on data
|
||||
double link_trace;
|
||||
double plaquette;
|
||||
uint32_t checksum;
|
||||
unsigned int sequence_number;
|
||||
std::string data_type;
|
||||
std::string ensemble_id ;
|
||||
std::string ensemble_label ;
|
||||
std::string creator ;
|
||||
std::string creator_hardware ;
|
||||
std::string creation_date ;
|
||||
std::string archive_date ;
|
||||
std::string floating_point;
|
||||
};
|
||||
|
||||
//////////////////////////////////////////////////////////////////////
|
||||
// Bit and Physical Checksumming and QA of data
|
||||
//////////////////////////////////////////////////////////////////////
|
||||
//////////////////////////////////////////////////////////////////////
|
||||
// Bit and Physical Checksumming and QA of data
|
||||
//////////////////////////////////////////////////////////////////////
|
||||
|
||||
inline void NerscGrid(GridBase *grid,NerscField &header)
|
||||
{
|
||||
assert(grid->_ndimension==4);
|
||||
for(int d=0;d<4;d++) {
|
||||
header.dimension[d] = grid->_fdimensions[d];
|
||||
}
|
||||
for(int d=0;d<4;d++) {
|
||||
header.boundary[d] = std::string("PERIODIC");
|
||||
}
|
||||
}
|
||||
template<class GaugeField>
|
||||
inline void NerscStatistics(GaugeField & data,NerscField &header)
|
||||
{
|
||||
// How to convert data precision etc...
|
||||
header.link_trace=Grid::QCD::WilsonLoops<PeriodicGimplR>::linkTrace(data);
|
||||
header.plaquette =Grid::QCD::WilsonLoops<PeriodicGimplR>::avgPlaquette(data);
|
||||
}
|
||||
inline void NerscGrid(GridBase *grid,NerscField &header)
|
||||
{
|
||||
assert(grid->_ndimension==4);
|
||||
for(int d=0;d<4;d++) {
|
||||
header.dimension[d] = grid->_fdimensions[d];
|
||||
}
|
||||
for(int d=0;d<4;d++) {
|
||||
header.boundary[d] = std::string("PERIODIC");
|
||||
}
|
||||
}
|
||||
template<class GaugeField>
|
||||
inline void NerscStatistics(GaugeField & data,NerscField &header)
|
||||
{
|
||||
// How to convert data precision etc...
|
||||
header.link_trace=Grid::QCD::WilsonLoops<PeriodicGimplR>::linkTrace(data);
|
||||
header.plaquette =Grid::QCD::WilsonLoops<PeriodicGimplR>::avgPlaquette(data);
|
||||
}
|
||||
|
||||
inline void NerscMachineCharacteristics(NerscField &header)
|
||||
{
|
||||
// Who
|
||||
struct passwd *pw = getpwuid (getuid());
|
||||
if (pw) header.creator = std::string(pw->pw_name);
|
||||
inline void NerscMachineCharacteristics(NerscField &header)
|
||||
{
|
||||
// Who
|
||||
struct passwd *pw = getpwuid (getuid());
|
||||
if (pw) header.creator = std::string(pw->pw_name);
|
||||
|
||||
// When
|
||||
std::time_t t = std::time(nullptr);
|
||||
std::tm tm = *std::localtime(&t);
|
||||
std::ostringstream oss;
|
||||
// oss << std::put_time(&tm, "%c %Z");
|
||||
header.creation_date = oss.str();
|
||||
header.archive_date = header.creation_date;
|
||||
// When
|
||||
std::time_t t = std::time(nullptr);
|
||||
std::tm tm = *std::localtime(&t);
|
||||
std::ostringstream oss;
|
||||
// oss << std::put_time(&tm, "%c %Z");
|
||||
header.creation_date = oss.str();
|
||||
header.archive_date = header.creation_date;
|
||||
|
||||
// What
|
||||
struct utsname name; uname(&name);
|
||||
header.creator_hardware = std::string(name.nodename)+"-";
|
||||
header.creator_hardware+= std::string(name.machine)+"-";
|
||||
header.creator_hardware+= std::string(name.sysname)+"-";
|
||||
header.creator_hardware+= std::string(name.release);
|
||||
// What
|
||||
struct utsname name; uname(&name);
|
||||
header.creator_hardware = std::string(name.nodename)+"-";
|
||||
header.creator_hardware+= std::string(name.machine)+"-";
|
||||
header.creator_hardware+= std::string(name.sysname)+"-";
|
||||
header.creator_hardware+= std::string(name.release);
|
||||
|
||||
}
|
||||
//////////////////////////////////////////////////////////////////////
|
||||
// Utilities ; these are QCD aware
|
||||
//////////////////////////////////////////////////////////////////////
|
||||
}
|
||||
//////////////////////////////////////////////////////////////////////
|
||||
// Utilities ; these are QCD aware
|
||||
//////////////////////////////////////////////////////////////////////
|
||||
inline void NerscChecksum(uint32_t *buf,uint32_t buf_size_bytes,uint32_t &csum)
|
||||
{
|
||||
BinaryIO::Uint32Checksum(buf,buf_size_bytes,csum);
|
||||
@ -137,9 +137,9 @@ inline void NerscMachineCharacteristics(NerscField &header)
|
||||
const int y=1;
|
||||
const int z=2;
|
||||
for(int mu=0;mu<4;mu++){
|
||||
cm(mu)()(2,x) = adj(cm(mu)()(0,y)*cm(mu)()(1,z)-cm(mu)()(0,z)*cm(mu)()(1,y)); //x= yz-zy
|
||||
cm(mu)()(2,y) = adj(cm(mu)()(0,z)*cm(mu)()(1,x)-cm(mu)()(0,x)*cm(mu)()(1,z)); //y= zx-xz
|
||||
cm(mu)()(2,z) = adj(cm(mu)()(0,x)*cm(mu)()(1,y)-cm(mu)()(0,y)*cm(mu)()(1,x)); //z= xy-yx
|
||||
cm(mu)()(2,x) = adj(cm(mu)()(0,y)*cm(mu)()(1,z)-cm(mu)()(0,z)*cm(mu)()(1,y)); //x= yz-zy
|
||||
cm(mu)()(2,y) = adj(cm(mu)()(0,z)*cm(mu)()(1,x)-cm(mu)()(0,x)*cm(mu)()(1,z)); //y= zx-xz
|
||||
cm(mu)()(2,z) = adj(cm(mu)()(0,x)*cm(mu)()(1,y)-cm(mu)()(0,y)*cm(mu)()(1,x)); //z= xy-yx
|
||||
}
|
||||
}
|
||||
|
||||
@ -175,15 +175,15 @@ inline void NerscMachineCharacteristics(NerscField &header)
|
||||
struct Nersc3x2munger{
|
||||
void operator() (fobj &in,sobj &out,uint32_t &csum){
|
||||
|
||||
NerscChecksum((uint32_t *)&in,sizeof(in),csum);
|
||||
NerscChecksum((uint32_t *)&in,sizeof(in),csum);
|
||||
|
||||
for(int mu=0;mu<4;mu++){
|
||||
for(int i=0;i<2;i++){
|
||||
for(int j=0;j<3;j++){
|
||||
out(mu)()(i,j) = in(mu)(i)(j);
|
||||
}}
|
||||
}
|
||||
reconstruct3(out);
|
||||
for(int mu=0;mu<4;mu++){
|
||||
for(int i=0;i<2;i++){
|
||||
for(int j=0;j<3;j++){
|
||||
out(mu)()(i,j) = in(mu)(i)(j);
|
||||
}}
|
||||
}
|
||||
reconstruct3(out);
|
||||
}
|
||||
};
|
||||
|
||||
@ -193,85 +193,87 @@ inline void NerscMachineCharacteristics(NerscField &header)
|
||||
void operator() (sobj &in,fobj &out,uint32_t &csum){
|
||||
|
||||
|
||||
for(int mu=0;mu<4;mu++){
|
||||
for(int i=0;i<2;i++){
|
||||
for(int j=0;j<3;j++){
|
||||
out(mu)(i)(j) = in(mu)()(i,j);
|
||||
}}
|
||||
}
|
||||
for(int mu=0;mu<4;mu++){
|
||||
for(int i=0;i<2;i++){
|
||||
for(int j=0;j<3;j++){
|
||||
out(mu)(i)(j) = in(mu)()(i,j);
|
||||
}}
|
||||
}
|
||||
|
||||
NerscChecksum((uint32_t *)&out,sizeof(out),csum);
|
||||
NerscChecksum((uint32_t *)&out,sizeof(out),csum);
|
||||
|
||||
}
|
||||
};
|
||||
|
||||
|
||||
////////////////////////////////////////////////////////////////////////////////
|
||||
// Write and read from fstream; comput header offset for payload
|
||||
////////////////////////////////////////////////////////////////////////////////
|
||||
class NerscIO : public BinaryIO {
|
||||
public:
|
||||
////////////////////////////////////////////////////////////////////////////////
|
||||
// Write and read from fstream; comput header offset for payload
|
||||
////////////////////////////////////////////////////////////////////////////////
|
||||
class NerscIO : public BinaryIO {
|
||||
public:
|
||||
|
||||
static inline void truncate(std::string file){
|
||||
std::ofstream fout(file,std::ios::out);
|
||||
}
|
||||
static inline void truncate(std::string file){
|
||||
std::ofstream fout(file,std::ios::out);
|
||||
}
|
||||
|
||||
#define dump_nersc_header(field, s)\
|
||||
s << "BEGIN_HEADER" << std::endl;\
|
||||
s << "HDR_VERSION = " << field.hdr_version << std::endl;\
|
||||
s << "DATATYPE = " << field.data_type << std::endl;\
|
||||
s << "STORAGE_FORMAT = " << field.storage_format << std::endl;\
|
||||
for(int i=0;i<4;i++){\
|
||||
s << "DIMENSION_" << i+1 << " = " << field.dimension[i] << std::endl ;\
|
||||
}\
|
||||
s << "LINK_TRACE = " << std::setprecision(10) << field.link_trace << std::endl;\
|
||||
s << "PLAQUETTE = " << std::setprecision(10) << field.plaquette << std::endl;\
|
||||
for(int i=0;i<4;i++){\
|
||||
s << "BOUNDARY_"<<i+1<<" = " << field.boundary[i] << std::endl;\
|
||||
}\
|
||||
\
|
||||
s << "CHECKSUM = "<< std::hex << std::setw(10) << field.checksum << std::dec<<std::endl;\
|
||||
s << "ENSEMBLE_ID = " << field.ensemble_id << std::endl;\
|
||||
s << "ENSEMBLE_LABEL = " << field.ensemble_label << std::endl;\
|
||||
s << "SEQUENCE_NUMBER = " << field.sequence_number << std::endl;\
|
||||
s << "CREATOR = " << field.creator << std::endl;\
|
||||
s << "CREATOR_HARDWARE = "<< field.creator_hardware << std::endl;\
|
||||
s << "CREATION_DATE = " << field.creation_date << std::endl;\
|
||||
s << "ARCHIVE_DATE = " << field.archive_date << std::endl;\
|
||||
s << "FLOATING_POINT = " << field.floating_point << std::endl;\
|
||||
s << "END_HEADER" << std::endl;
|
||||
#define dump_nersc_header(field, s) \
|
||||
s << "BEGIN_HEADER" << std::endl; \
|
||||
s << "HDR_VERSION = " << field.hdr_version << std::endl; \
|
||||
s << "DATATYPE = " << field.data_type << std::endl; \
|
||||
s << "STORAGE_FORMAT = " << field.storage_format << std::endl; \
|
||||
for(int i=0;i<4;i++){ \
|
||||
s << "DIMENSION_" << i+1 << " = " << field.dimension[i] << std::endl ; \
|
||||
} \
|
||||
s << "LINK_TRACE = " << std::setprecision(10) << field.link_trace << std::endl; \
|
||||
s << "PLAQUETTE = " << std::setprecision(10) << field.plaquette << std::endl; \
|
||||
for(int i=0;i<4;i++){ \
|
||||
s << "BOUNDARY_"<<i+1<<" = " << field.boundary[i] << std::endl; \
|
||||
} \
|
||||
\
|
||||
s << "CHECKSUM = "<< std::hex << std::setw(10) << field.checksum << std::dec<<std::endl; \
|
||||
s << "ENSEMBLE_ID = " << field.ensemble_id << std::endl; \
|
||||
s << "ENSEMBLE_LABEL = " << field.ensemble_label << std::endl; \
|
||||
s << "SEQUENCE_NUMBER = " << field.sequence_number << std::endl; \
|
||||
s << "CREATOR = " << field.creator << std::endl; \
|
||||
s << "CREATOR_HARDWARE = "<< field.creator_hardware << std::endl; \
|
||||
s << "CREATION_DATE = " << field.creation_date << std::endl; \
|
||||
s << "ARCHIVE_DATE = " << field.archive_date << std::endl; \
|
||||
s << "FLOATING_POINT = " << field.floating_point << std::endl; \
|
||||
s << "END_HEADER" << std::endl;
|
||||
|
||||
static inline unsigned int writeHeader(NerscField &field,std::string file)
|
||||
{
|
||||
std::ofstream fout(file,std::ios::out|std::ios::in);
|
||||
|
||||
fout.seekp(0,std::ios::beg);
|
||||
dump_nersc_header(field, fout);
|
||||
field.data_start = fout.tellp();
|
||||
return field.data_start;
|
||||
}
|
||||
static inline unsigned int writeHeader(NerscField &field,std::string file)
|
||||
{
|
||||
std::ofstream fout(file,std::ios::out|std::ios::in);
|
||||
fout.seekp(0,std::ios::beg);
|
||||
dump_nersc_header(field, fout);
|
||||
field.data_start = fout.tellp();
|
||||
return field.data_start;
|
||||
}
|
||||
|
||||
// for the header-reader
|
||||
static inline int readHeader(std::string file,GridBase *grid, NerscField &field)
|
||||
{
|
||||
int offset=0;
|
||||
std::map<std::string,std::string> header;
|
||||
std::string line;
|
||||
// for the header-reader
|
||||
static inline int readHeader(std::string file,GridBase *grid, NerscField &field)
|
||||
{
|
||||
int offset=0;
|
||||
std::map<std::string,std::string> header;
|
||||
std::string line;
|
||||
|
||||
//////////////////////////////////////////////////
|
||||
// read the header
|
||||
//////////////////////////////////////////////////
|
||||
std::ifstream fin(file);
|
||||
//////////////////////////////////////////////////
|
||||
// read the header
|
||||
//////////////////////////////////////////////////
|
||||
std::ifstream fin(file);
|
||||
|
||||
getline(fin,line); // read one line and insist is
|
||||
getline(fin,line); // read one line and insist is
|
||||
|
||||
removeWhitespace(line);
|
||||
assert(line==std::string("BEGIN_HEADER"));
|
||||
removeWhitespace(line);
|
||||
std::cout << GridLogMessage << "* " << line << std::endl;
|
||||
|
||||
do {
|
||||
getline(fin,line); // read one line
|
||||
int eq = line.find("=");
|
||||
if(eq >0) {
|
||||
assert(line==std::string("BEGIN_HEADER"));
|
||||
|
||||
do {
|
||||
getline(fin,line); // read one line
|
||||
std::cout << GridLogMessage << "* "<<line<< std::endl;
|
||||
int eq = line.find("=");
|
||||
if(eq >0) {
|
||||
std::string key=line.substr(0,eq);
|
||||
std::string val=line.substr(eq+1);
|
||||
removeWhitespace(key);
|
||||
@ -279,244 +281,272 @@ static inline int readHeader(std::string file,GridBase *grid, NerscField &field
|
||||
|
||||
header[key] = val;
|
||||
}
|
||||
} while( line.find("END_HEADER") == std::string::npos );
|
||||
} while( line.find("END_HEADER") == std::string::npos );
|
||||
|
||||
field.data_start = fin.tellg();
|
||||
field.data_start = fin.tellg();
|
||||
|
||||
//////////////////////////////////////////////////
|
||||
// chomp the values
|
||||
//////////////////////////////////////////////////
|
||||
field.hdr_version = header["HDR_VERSION"];
|
||||
field.data_type = header["DATATYPE"];
|
||||
field.storage_format = header["STORAGE_FORMAT"];
|
||||
//////////////////////////////////////////////////
|
||||
// chomp the values
|
||||
//////////////////////////////////////////////////
|
||||
field.hdr_version = header["HDR_VERSION"];
|
||||
field.data_type = header["DATATYPE"];
|
||||
field.storage_format = header["STORAGE_FORMAT"];
|
||||
|
||||
field.dimension[0] = std::stol(header["DIMENSION_1"]);
|
||||
field.dimension[1] = std::stol(header["DIMENSION_2"]);
|
||||
field.dimension[2] = std::stol(header["DIMENSION_3"]);
|
||||
field.dimension[3] = std::stol(header["DIMENSION_4"]);
|
||||
field.dimension[0] = std::stol(header["DIMENSION_1"]);
|
||||
field.dimension[1] = std::stol(header["DIMENSION_2"]);
|
||||
field.dimension[2] = std::stol(header["DIMENSION_3"]);
|
||||
field.dimension[3] = std::stol(header["DIMENSION_4"]);
|
||||
|
||||
assert(grid->_ndimension == 4);
|
||||
for(int d=0;d<4;d++){
|
||||
assert(grid->_fdimensions[d]==field.dimension[d]);
|
||||
}
|
||||
|
||||
field.link_trace = std::stod(header["LINK_TRACE"]);
|
||||
field.plaquette = std::stod(header["PLAQUETTE"]);
|
||||
|
||||
field.boundary[0] = header["BOUNDARY_1"];
|
||||
field.boundary[1] = header["BOUNDARY_2"];
|
||||
field.boundary[2] = header["BOUNDARY_3"];
|
||||
field.boundary[3] = header["BOUNDARY_4"];
|
||||
|
||||
field.checksum = std::stoul(header["CHECKSUM"],0,16);
|
||||
field.ensemble_id = header["ENSEMBLE_ID"];
|
||||
field.ensemble_label = header["ENSEMBLE_LABEL"];
|
||||
field.sequence_number = std::stol(header["SEQUENCE_NUMBER"]);
|
||||
field.creator = header["CREATOR"];
|
||||
field.creator_hardware = header["CREATOR_HARDWARE"];
|
||||
field.creation_date = header["CREATION_DATE"];
|
||||
field.archive_date = header["ARCHIVE_DATE"];
|
||||
field.floating_point = header["FLOATING_POINT"];
|
||||
|
||||
return field.data_start;
|
||||
}
|
||||
|
||||
/////////////////////////////////////////////////////////////////////////////////////////////////////////////////////
|
||||
// Now the meat: the object readers
|
||||
/////////////////////////////////////////////////////////////////////////////////////////////////////////////////////
|
||||
|
||||
template<class vsimd>
|
||||
static inline void readConfiguration(Lattice<iLorentzColourMatrix<vsimd> > &Umu,NerscField& header,std::string file)
|
||||
{
|
||||
typedef Lattice<iLorentzColourMatrix<vsimd> > GaugeField;
|
||||
|
||||
GridBase *grid = Umu._grid;
|
||||
int offset = readHeader(file,Umu._grid,header);
|
||||
|
||||
NerscField clone(header);
|
||||
|
||||
std::string format(header.floating_point);
|
||||
|
||||
int ieee32big = (format == std::string("IEEE32BIG"));
|
||||
int ieee32 = (format == std::string("IEEE32"));
|
||||
int ieee64big = (format == std::string("IEEE64BIG"));
|
||||
int ieee64 = (format == std::string("IEEE64"));
|
||||
|
||||
uint32_t csum;
|
||||
// depending on datatype, set up munger;
|
||||
// munger is a function of <floating point, Real, data_type>
|
||||
if ( header.data_type == std::string("4D_SU3_GAUGE") ) {
|
||||
if ( ieee32 || ieee32big ) {
|
||||
// csum=BinaryIO::readObjectSerial<iLorentzColourMatrix<vsimd>, LorentzColour2x3F>
|
||||
csum=BinaryIO::readObjectParallel<iLorentzColourMatrix<vsimd>, LorentzColour2x3F>
|
||||
(Umu,file,Nersc3x2munger<LorentzColour2x3F,LorentzColourMatrix>(), offset,format);
|
||||
assert(grid->_ndimension == 4);
|
||||
for(int d=0;d<4;d++){
|
||||
assert(grid->_fdimensions[d]==field.dimension[d]);
|
||||
}
|
||||
if ( ieee64 || ieee64big ) {
|
||||
//csum=BinaryIO::readObjectSerial<iLorentzColourMatrix<vsimd>, LorentzColour2x3D>
|
||||
csum=BinaryIO::readObjectParallel<iLorentzColourMatrix<vsimd>, LorentzColour2x3D>
|
||||
(Umu,file,Nersc3x2munger<LorentzColour2x3D,LorentzColourMatrix>(),offset,format);
|
||||
|
||||
field.link_trace = std::stod(header["LINK_TRACE"]);
|
||||
field.plaquette = std::stod(header["PLAQUETTE"]);
|
||||
|
||||
field.boundary[0] = header["BOUNDARY_1"];
|
||||
field.boundary[1] = header["BOUNDARY_2"];
|
||||
field.boundary[2] = header["BOUNDARY_3"];
|
||||
field.boundary[3] = header["BOUNDARY_4"];
|
||||
|
||||
field.checksum = std::stoul(header["CHECKSUM"],0,16);
|
||||
field.ensemble_id = header["ENSEMBLE_ID"];
|
||||
field.ensemble_label = header["ENSEMBLE_LABEL"];
|
||||
field.sequence_number = std::stol(header["SEQUENCE_NUMBER"]);
|
||||
field.creator = header["CREATOR"];
|
||||
field.creator_hardware = header["CREATOR_HARDWARE"];
|
||||
field.creation_date = header["CREATION_DATE"];
|
||||
field.archive_date = header["ARCHIVE_DATE"];
|
||||
field.floating_point = header["FLOATING_POINT"];
|
||||
|
||||
return field.data_start;
|
||||
}
|
||||
} else if ( header.data_type == std::string("4D_SU3_GAUGE_3x3") ) {
|
||||
if ( ieee32 || ieee32big ) {
|
||||
//csum=BinaryIO::readObjectSerial<iLorentzColourMatrix<vsimd>,LorentzColourMatrixF>
|
||||
csum=BinaryIO::readObjectParallel<iLorentzColourMatrix<vsimd>,LorentzColourMatrixF>
|
||||
(Umu,file,NerscSimpleMunger<LorentzColourMatrixF,LorentzColourMatrix>(),offset,format);
|
||||
}
|
||||
if ( ieee64 || ieee64big ) {
|
||||
// csum=BinaryIO::readObjectSerial<iLorentzColourMatrix<vsimd>,LorentzColourMatrixD>
|
||||
csum=BinaryIO::readObjectParallel<iLorentzColourMatrix<vsimd>,LorentzColourMatrixD>
|
||||
(Umu,file,NerscSimpleMunger<LorentzColourMatrixD,LorentzColourMatrix>(),offset,format);
|
||||
}
|
||||
} else {
|
||||
assert(0);
|
||||
}
|
||||
|
||||
NerscStatistics<GaugeField>(Umu,clone);
|
||||
/////////////////////////////////////////////////////////////////////////////////////////////////////////////////////
|
||||
// Now the meat: the object readers
|
||||
/////////////////////////////////////////////////////////////////////////////////////////////////////////////////////
|
||||
#define PARALLEL_READ
|
||||
#define PARALLEL_WRITE
|
||||
|
||||
assert(fabs(clone.plaquette -header.plaquette ) < 1.0e-5 );
|
||||
assert(fabs(clone.link_trace-header.link_trace) < 1.0e-6 );
|
||||
template<class vsimd>
|
||||
static inline void readConfiguration(Lattice<iLorentzColourMatrix<vsimd> > &Umu,NerscField& header,std::string file)
|
||||
{
|
||||
typedef Lattice<iLorentzColourMatrix<vsimd> > GaugeField;
|
||||
|
||||
assert(csum == header.checksum );
|
||||
GridBase *grid = Umu._grid;
|
||||
int offset = readHeader(file,Umu._grid,header);
|
||||
|
||||
std::cout<<GridLogMessage <<"Read NERSC Configuration "<<file<< " and plaquette, link trace, and checksum agree"<<std::endl;
|
||||
}
|
||||
NerscField clone(header);
|
||||
|
||||
template<class vsimd>
|
||||
static inline void writeConfiguration(Lattice<iLorentzColourMatrix<vsimd> > &Umu,std::string file, int two_row,int bits32)
|
||||
{
|
||||
typedef Lattice<iLorentzColourMatrix<vsimd> > GaugeField;
|
||||
std::string format(header.floating_point);
|
||||
|
||||
typedef iLorentzColourMatrix<vsimd> vobj;
|
||||
typedef typename vobj::scalar_object sobj;
|
||||
int ieee32big = (format == std::string("IEEE32BIG"));
|
||||
int ieee32 = (format == std::string("IEEE32"));
|
||||
int ieee64big = (format == std::string("IEEE64BIG"));
|
||||
int ieee64 = (format == std::string("IEEE64"));
|
||||
|
||||
// Following should become arguments
|
||||
NerscField header;
|
||||
header.sequence_number = 1;
|
||||
header.ensemble_id = "UKQCD";
|
||||
header.ensemble_label = "DWF";
|
||||
uint32_t csum;
|
||||
// depending on datatype, set up munger;
|
||||
// munger is a function of <floating point, Real, data_type>
|
||||
if ( header.data_type == std::string("4D_SU3_GAUGE") ) {
|
||||
if ( ieee32 || ieee32big ) {
|
||||
#ifdef PARALLEL_READ
|
||||
csum=BinaryIO::readObjectParallel<iLorentzColourMatrix<vsimd>, LorentzColour2x3F>
|
||||
(Umu,file,Nersc3x2munger<LorentzColour2x3F,LorentzColourMatrix>(), offset,format);
|
||||
#else
|
||||
csum=BinaryIO::readObjectSerial<iLorentzColourMatrix<vsimd>, LorentzColour2x3F>
|
||||
(Umu,file,Nersc3x2munger<LorentzColour2x3F,LorentzColourMatrix>(), offset,format);
|
||||
#endif
|
||||
}
|
||||
if ( ieee64 || ieee64big ) {
|
||||
#ifdef PARALLEL_READ
|
||||
csum=BinaryIO::readObjectParallel<iLorentzColourMatrix<vsimd>, LorentzColour2x3D>
|
||||
(Umu,file,Nersc3x2munger<LorentzColour2x3D,LorentzColourMatrix>(),offset,format);
|
||||
#else
|
||||
csum=BinaryIO::readObjectSerial<iLorentzColourMatrix<vsimd>, LorentzColour2x3D>
|
||||
(Umu,file,Nersc3x2munger<LorentzColour2x3D,LorentzColourMatrix>(),offset,format);
|
||||
#endif
|
||||
}
|
||||
} else if ( header.data_type == std::string("4D_SU3_GAUGE_3x3") ) {
|
||||
if ( ieee32 || ieee32big ) {
|
||||
#ifdef PARALLEL_READ
|
||||
csum=BinaryIO::readObjectParallel<iLorentzColourMatrix<vsimd>,LorentzColourMatrixF>
|
||||
(Umu,file,NerscSimpleMunger<LorentzColourMatrixF,LorentzColourMatrix>(),offset,format);
|
||||
#else
|
||||
csum=BinaryIO::readObjectSerial<iLorentzColourMatrix<vsimd>,LorentzColourMatrixF>
|
||||
(Umu,file,NerscSimpleMunger<LorentzColourMatrixF,LorentzColourMatrix>(),offset,format);
|
||||
#endif
|
||||
}
|
||||
if ( ieee64 || ieee64big ) {
|
||||
#ifdef PARALLEL_READ
|
||||
csum=BinaryIO::readObjectParallel<iLorentzColourMatrix<vsimd>,LorentzColourMatrixD>
|
||||
(Umu,file,NerscSimpleMunger<LorentzColourMatrixD,LorentzColourMatrix>(),offset,format);
|
||||
#else
|
||||
csum=BinaryIO::readObjectSerial<iLorentzColourMatrix<vsimd>,LorentzColourMatrixD>
|
||||
(Umu,file,NerscSimpleMunger<LorentzColourMatrixD,LorentzColourMatrix>(),offset,format);
|
||||
#endif
|
||||
}
|
||||
} else {
|
||||
assert(0);
|
||||
}
|
||||
|
||||
typedef LorentzColourMatrixD fobj3D;
|
||||
typedef LorentzColour2x3D fobj2D;
|
||||
NerscStatistics<GaugeField>(Umu,clone);
|
||||
|
||||
std::cout<<GridLogMessage <<"NERSC Configuration "<<file<<" checksum "<<std::hex<< csum<< std::dec
|
||||
<<" header "<<std::hex<<header.checksum<<std::dec <<std::endl;
|
||||
std::cout<<GridLogMessage <<"NERSC Configuration "<<file<<" plaquette "<<clone.plaquette
|
||||
<<" header "<<header.plaquette<<std::endl;
|
||||
std::cout<<GridLogMessage <<"NERSC Configuration "<<file<<" link_trace "<<clone.link_trace
|
||||
<<" header "<<header.link_trace<<std::endl;
|
||||
assert(fabs(clone.plaquette -header.plaquette ) < 1.0e-5 );
|
||||
assert(fabs(clone.link_trace-header.link_trace) < 1.0e-6 );
|
||||
assert(csum == header.checksum );
|
||||
|
||||
std::cout<<GridLogMessage <<"NERSC Configuration "<<file<< " and plaquette, link trace, and checksum agree"<<std::endl;
|
||||
}
|
||||
|
||||
template<class vsimd>
|
||||
static inline void writeConfiguration(Lattice<iLorentzColourMatrix<vsimd> > &Umu,std::string file, int two_row,int bits32)
|
||||
{
|
||||
typedef Lattice<iLorentzColourMatrix<vsimd> > GaugeField;
|
||||
|
||||
typedef iLorentzColourMatrix<vsimd> vobj;
|
||||
typedef typename vobj::scalar_object sobj;
|
||||
|
||||
// Following should become arguments
|
||||
NerscField header;
|
||||
header.sequence_number = 1;
|
||||
header.ensemble_id = "UKQCD";
|
||||
header.ensemble_label = "DWF";
|
||||
|
||||
typedef LorentzColourMatrixD fobj3D;
|
||||
typedef LorentzColour2x3D fobj2D;
|
||||
|
||||
GridBase *grid = Umu._grid;
|
||||
GridBase *grid = Umu._grid;
|
||||
|
||||
NerscGrid(grid,header);
|
||||
NerscStatistics<GaugeField>(Umu,header);
|
||||
NerscMachineCharacteristics(header);
|
||||
NerscGrid(grid,header);
|
||||
NerscStatistics<GaugeField>(Umu,header);
|
||||
NerscMachineCharacteristics(header);
|
||||
|
||||
uint32_t csum;
|
||||
int offset;
|
||||
uint32_t csum;
|
||||
int offset;
|
||||
|
||||
truncate(file);
|
||||
truncate(file);
|
||||
|
||||
if ( two_row ) {
|
||||
if ( two_row ) {
|
||||
|
||||
header.floating_point = std::string("IEEE64BIG");
|
||||
header.data_type = std::string("4D_SU3_GAUGE");
|
||||
Nersc3x2unmunger<fobj2D,sobj> munge;
|
||||
BinaryIO::Uint32Checksum<vobj,fobj2D>(Umu, munge,header.checksum);
|
||||
offset = writeHeader(header,file);
|
||||
csum=BinaryIO::writeObjectSerial<vobj,fobj2D>(Umu,file,munge,offset,header.floating_point);
|
||||
header.floating_point = std::string("IEEE64BIG");
|
||||
header.data_type = std::string("4D_SU3_GAUGE");
|
||||
Nersc3x2unmunger<fobj2D,sobj> munge;
|
||||
BinaryIO::Uint32Checksum<vobj,fobj2D>(Umu, munge,header.checksum);
|
||||
offset = writeHeader(header,file);
|
||||
#ifdef PARALLEL_WRITE
|
||||
csum=BinaryIO::writeObjectParallel<vobj,fobj2D>(Umu,file,munge,offset,header.floating_point);
|
||||
#else
|
||||
csum=BinaryIO::writeObjectSerial<vobj,fobj2D>(Umu,file,munge,offset,header.floating_point);
|
||||
#endif
|
||||
} else {
|
||||
header.floating_point = std::string("IEEE64BIG");
|
||||
header.data_type = std::string("4D_SU3_GAUGE_3x3");
|
||||
NerscSimpleUnmunger<fobj3D,sobj> munge;
|
||||
BinaryIO::Uint32Checksum<vobj,fobj3D>(Umu, munge,header.checksum);
|
||||
offset = writeHeader(header,file);
|
||||
#ifdef PARALLEL_WRITE
|
||||
csum=BinaryIO::writeObjectParallel<vobj,fobj3D>(Umu,file,munge,offset,header.floating_point);
|
||||
#else
|
||||
csum=BinaryIO::writeObjectSerial<vobj,fobj3D>(Umu,file,munge,offset,header.floating_point);
|
||||
#endif
|
||||
}
|
||||
|
||||
std::string file1 = file+"para";
|
||||
int offset1 = writeHeader(header,file1);
|
||||
int csum1=BinaryIO::writeObjectParallel<vobj,fobj2D>(Umu,file1,munge,offset,header.floating_point);
|
||||
//int csum1=BinaryIO::writeObjectSerial<vobj,fobj2D>(Umu,file1,munge,offset,header.floating_point);
|
||||
std::cout<<GridLogMessage <<"Written NERSC Configuration on "<< file << " checksum "<<std::hex<<csum<< std::dec<<" plaq "<< header.plaquette <<std::endl;
|
||||
|
||||
|
||||
//std::cout << GridLogMessage << " TESTING PARALLEL WRITE offsets " << offset1 << " "<< offset << std::endl;
|
||||
//std::cout << GridLogMessage << " TESTING PARALLEL WRITE csums " << csum1 << " "<<std::hex<< csum << std::dec<< std::endl;
|
||||
|
||||
assert(offset1==offset);
|
||||
assert(csum1==csum);
|
||||
|
||||
} else {
|
||||
header.floating_point = std::string("IEEE64BIG");
|
||||
header.data_type = std::string("4D_SU3_GAUGE_3x3");
|
||||
NerscSimpleUnmunger<fobj3D,sobj> munge;
|
||||
BinaryIO::Uint32Checksum<vobj,fobj3D>(Umu, munge,header.checksum);
|
||||
offset = writeHeader(header,file);
|
||||
csum=BinaryIO::writeObjectParallel<vobj,fobj3D>(Umu,file,munge,offset,header.floating_point);
|
||||
}
|
||||
|
||||
std::cout<<GridLogMessage <<"Written NERSC Configuration on "<< file << " checksum "<<std::hex<<csum<< std::dec<<" plaq "<< header.plaquette <<std::endl;
|
||||
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
///////////////////////////////
|
||||
// RNG state
|
||||
///////////////////////////////
|
||||
static inline void writeRNGState(GridSerialRNG &serial,GridParallelRNG ¶llel,std::string file)
|
||||
{
|
||||
typedef typename GridParallelRNG::RngStateType RngStateType;
|
||||
///////////////////////////////
|
||||
// RNG state
|
||||
///////////////////////////////
|
||||
static inline void writeRNGState(GridSerialRNG &serial,GridParallelRNG ¶llel,std::string file)
|
||||
{
|
||||
typedef typename GridParallelRNG::RngStateType RngStateType;
|
||||
|
||||
// Following should become arguments
|
||||
NerscField header;
|
||||
header.sequence_number = 1;
|
||||
header.ensemble_id = "UKQCD";
|
||||
header.ensemble_label = "DWF";
|
||||
// Following should become arguments
|
||||
NerscField header;
|
||||
header.sequence_number = 1;
|
||||
header.ensemble_id = "UKQCD";
|
||||
header.ensemble_label = "DWF";
|
||||
|
||||
GridBase *grid = parallel._grid;
|
||||
GridBase *grid = parallel._grid;
|
||||
|
||||
NerscGrid(grid,header);
|
||||
header.link_trace=0.0;
|
||||
header.plaquette=0.0;
|
||||
NerscMachineCharacteristics(header);
|
||||
NerscGrid(grid,header);
|
||||
header.link_trace=0.0;
|
||||
header.plaquette=0.0;
|
||||
NerscMachineCharacteristics(header);
|
||||
|
||||
uint32_t csum;
|
||||
int offset;
|
||||
uint32_t csum;
|
||||
int offset;
|
||||
|
||||
#ifdef RNG_RANLUX
|
||||
header.floating_point = std::string("UINT64");
|
||||
header.data_type = std::string("RANLUX48");
|
||||
#else
|
||||
header.floating_point = std::string("UINT32");
|
||||
header.data_type = std::string("MT19937");
|
||||
header.floating_point = std::string("UINT64");
|
||||
header.data_type = std::string("RANLUX48");
|
||||
#endif
|
||||
#ifdef RNG_MT19937
|
||||
header.floating_point = std::string("UINT32");
|
||||
header.data_type = std::string("MT19937");
|
||||
#endif
|
||||
#ifdef RNG_SITMO
|
||||
header.floating_point = std::string("UINT64");
|
||||
header.data_type = std::string("SITMO");
|
||||
#endif
|
||||
|
||||
truncate(file);
|
||||
offset = writeHeader(header,file);
|
||||
csum=BinaryIO::writeRNGSerial(serial,parallel,file,offset);
|
||||
header.checksum = csum;
|
||||
offset = writeHeader(header,file);
|
||||
truncate(file);
|
||||
offset = writeHeader(header,file);
|
||||
csum=BinaryIO::writeRNGSerial(serial,parallel,file,offset);
|
||||
header.checksum = csum;
|
||||
offset = writeHeader(header,file);
|
||||
|
||||
std::cout<<GridLogMessage <<"Written NERSC RNG STATE "<<file<< " checksum "<<std::hex<<csum<<std::dec<<std::endl;
|
||||
std::cout<<GridLogMessage <<"Written NERSC RNG STATE "<<file<< " checksum "<<std::hex<<csum<<std::dec<<std::endl;
|
||||
|
||||
}
|
||||
}
|
||||
|
||||
static inline void readRNGState(GridSerialRNG &serial,GridParallelRNG & parallel,NerscField& header,std::string file)
|
||||
{
|
||||
typedef typename GridParallelRNG::RngStateType RngStateType;
|
||||
static inline void readRNGState(GridSerialRNG &serial,GridParallelRNG & parallel,NerscField& header,std::string file)
|
||||
{
|
||||
typedef typename GridParallelRNG::RngStateType RngStateType;
|
||||
|
||||
GridBase *grid = parallel._grid;
|
||||
GridBase *grid = parallel._grid;
|
||||
|
||||
int offset = readHeader(file,grid,header);
|
||||
int offset = readHeader(file,grid,header);
|
||||
|
||||
NerscField clone(header);
|
||||
NerscField clone(header);
|
||||
|
||||
std::string format(header.floating_point);
|
||||
std::string data_type(header.data_type);
|
||||
std::string format(header.floating_point);
|
||||
std::string data_type(header.data_type);
|
||||
|
||||
#ifdef RNG_RANLUX
|
||||
assert(format == std::string("UINT64"));
|
||||
assert(data_type == std::string("RANLUX48"));
|
||||
#else
|
||||
assert(format == std::string("UINT32"));
|
||||
assert(data_type == std::string("MT19937"));
|
||||
assert(format == std::string("UINT64"));
|
||||
assert(data_type == std::string("RANLUX48"));
|
||||
#endif
|
||||
#ifdef RNG_MT19937
|
||||
assert(format == std::string("UINT32"));
|
||||
assert(data_type == std::string("MT19937"));
|
||||
#endif
|
||||
#ifdef RNG_SITMO
|
||||
assert(format == std::string("UINT64"));
|
||||
assert(data_type == std::string("SITMO"));
|
||||
#endif
|
||||
|
||||
// depending on datatype, set up munger;
|
||||
// munger is a function of <floating point, Real, data_type>
|
||||
uint32_t csum=BinaryIO::readRNGSerial(serial,parallel,file,offset);
|
||||
// depending on datatype, set up munger;
|
||||
// munger is a function of <floating point, Real, data_type>
|
||||
uint32_t csum=BinaryIO::readRNGSerial(serial,parallel,file,offset);
|
||||
|
||||
assert(csum == header.checksum );
|
||||
assert(csum == header.checksum );
|
||||
|
||||
std::cout<<GridLogMessage <<"Read NERSC RNG file "<<file<< " format "<< data_type <<std::endl;
|
||||
}
|
||||
std::cout<<GridLogMessage <<"Read NERSC RNG file "<<file<< " format "<< data_type <<std::endl;
|
||||
}
|
||||
|
||||
};
|
||||
};
|
||||
|
||||
|
||||
}}
|
||||
}}
|
||||
#endif
|
||||
|
||||
Reference in New Issue
Block a user