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update my fork and fixed conflicts

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This commit is contained in:
Vera Guelpers
2018-03-02 17:08:08 +00:00
parent 315a42843f 550142bd6a
commit aaf39222c3
48 changed files with 1277 additions and 164 deletions
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2
extras/Hadrons/Environment.cc
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@ -270,7 +270,7 @@ int Environment::getObjectModule(const std::string name) const
unsigned int Environment::getObjectLs(const unsigned int address) const
{
if (hasObject(address))
if (hasCreatedObject(address))
{
return object_[address].Ls;
}

20
extras/Hadrons/Global.cc
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@ -37,20 +37,38 @@ HadronsLogger Hadrons::HadronsLogWarning(1,"Warning");
HadronsLogger Hadrons::HadronsLogMessage(1,"Message");
HadronsLogger Hadrons::HadronsLogIterative(1,"Iterative");
HadronsLogger Hadrons::HadronsLogDebug(1,"Debug");
HadronsLogger Hadrons::HadronsLogIRL(1,"IRL");
void Hadrons::initLogger(void)
{
auto w = std::string("Hadrons").length();
auto w = std::string("Hadrons").length();
int cw = 8;
GridLogError.setTopWidth(w);
GridLogWarning.setTopWidth(w);
GridLogMessage.setTopWidth(w);
GridLogIterative.setTopWidth(w);
GridLogDebug.setTopWidth(w);
GridLogIRL.setTopWidth(w);
GridLogError.setChanWidth(cw);
GridLogWarning.setChanWidth(cw);
GridLogMessage.setChanWidth(cw);
GridLogIterative.setChanWidth(cw);
GridLogDebug.setChanWidth(cw);
GridLogIRL.setChanWidth(cw);
HadronsLogError.Active(GridLogError.isActive());
HadronsLogWarning.Active(GridLogWarning.isActive());
HadronsLogMessage.Active(GridLogMessage.isActive());
HadronsLogIterative.Active(GridLogIterative.isActive());
HadronsLogDebug.Active(GridLogDebug.isActive());
HadronsLogIRL.Active(GridLogIRL.isActive());
HadronsLogError.setChanWidth(cw);
HadronsLogWarning.setChanWidth(cw);
HadronsLogMessage.setChanWidth(cw);
HadronsLogIterative.setChanWidth(cw);
HadronsLogDebug.setChanWidth(cw);
HadronsLogIRL.setChanWidth(cw);
}
// type utilities //////////////////////////////////////////////////////////////

16
extras/Hadrons/Global.hpp
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@ -58,6 +58,9 @@ using Grid::operator<<;
#ifndef FIMPL
#define FIMPL WilsonImplR
#endif
#ifndef ZFIMPL
#define ZFIMPL ZWilsonImplR
#endif
#ifndef SIMPL
#define SIMPL ScalarImplCR
#endif
@ -111,6 +114,7 @@ extern HadronsLogger HadronsLogWarning;
extern HadronsLogger HadronsLogMessage;
extern HadronsLogger HadronsLogIterative;
extern HadronsLogger HadronsLogDebug;
extern HadronsLogger HadronsLogIRL;
void initLogger(void);
@ -180,6 +184,18 @@ typedef XmlWriter ResultWriter;
#define RESULT_FILE_NAME(name) \
name + "." + std::to_string(vm().getTrajectory()) + "." + resultFileExt
// default Schur convention
#ifndef HADRONS_DEFAULT_SCHUR
#define HADRONS_DEFAULT_SCHUR DiagMooee
#endif
#define _HADRONS_SCHUR_OP_(conv) Schur##conv##Operator
#define HADRONS_SCHUR_OP(conv) _HADRONS_SCHUR_OP_(conv)
#define HADRONS_DEFAULT_SCHUR_OP HADRONS_SCHUR_OP(HADRONS_DEFAULT_SCHUR)
#define _HADRONS_SCHUR_SOLVE_(conv) SchurRedBlack##conv##Solve
#define HADRONS_SCHUR_SOLVE(conv) _HADRONS_SCHUR_SOLVE_(conv)
#define HADRONS_DEFAULT_SCHUR_SOLVE HADRONS_SCHUR_SOLVE(HADRONS_DEFAULT_SCHUR)
END_HADRONS_NAMESPACE
#include <Grid/Hadrons/Exceptions.hpp>

115
extras/Hadrons/LanczosUtils.hpp Normal file
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@ -0,0 +1,115 @@
/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: extras/Hadrons/LanczosUtils.hpp
Copyright (C) 2015-2018
Author: Antonin Portelli <antonin.portelli@me.com>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#ifndef Hadrons_LanczosUtils_hpp_
#define Hadrons_LanczosUtils_hpp_
#include <Grid/Hadrons/Global.hpp>
#include <Grid/algorithms/iterative/LocalCoherenceLanczos.h>
BEGIN_HADRONS_NAMESPACE
// Lanczos type
#ifndef HADRONS_DEFAULT_LANCZOS_NBASIS
#define HADRONS_DEFAULT_LANCZOS_NBASIS 60
#endif
template <typename T>
struct EigenPack
{
typedef T VectorType;
std::vector<RealD> eval;
std::vector<T> evec;
EigenPack(void) = default;
EigenPack(const size_t size, GridBase *grid)
{
resize(size, grid);
}
void resize(const size_t size, GridBase *grid)
{
eval.resize(size);
evec.resize(size, grid);
}
void read(const std::string fileStem)
{
std::string evecFilename = fileStem + "_evec.bin";
std::string evalFilename = fileStem + "_eval.xml";
emptyUserRecord record;
ScidacReader binReader;
XmlReader xmlReader(evalFilename);
LOG(Message) << "Reading " << evec.size() << " eigenvectors from '"
<< evecFilename << "'" << std::endl;
binReader.open(evecFilename);
for(int k = 0; k < evec.size(); ++k)
{
binReader.readScidacFieldRecord(evec[k], record);
}
binReader.close();
LOG(Message) << "Reading " << eval.size() << " eigenvalues from '"
<< evalFilename << "'" << std::endl;
Grid::read(xmlReader, "evals", eval);
}
void write(const std::string fileStem)
{
std::string evecFilename = fileStem + "_evec.bin";
std::string evalFilename = fileStem + "_eval.xml";
emptyUserRecord record;
ScidacWriter binWriter;
XmlWriter xmlWriter(evalFilename);
LOG(Message) << "Writing " << evec.size() << " eigenvectors to '"
<< evecFilename << "'" << std::endl;
binWriter.open(fileStem + "_evec.bin");
for(int k = 0; k < evec.size(); ++k)
{
binWriter.writeScidacFieldRecord(evec[k], record);
}
binWriter.close();
LOG(Message) << "Writing " << eval.size() << " eigenvalues to '"
<< evalFilename << "'" << std::endl;
Grid::write(xmlWriter, "evals", eval);
}
};
template <typename FImpl>
using FineEigenPack = EigenPack<typename FImpl::FermionField>;
template <typename FImpl, int nBasis>
using CoarseEigenPack = EigenPack<
typename LocalCoherenceLanczos<typename FImpl::SiteSpinor,
typename FImpl::SiteComplex,
nBasis>::CoarseField>;
END_HADRONS_NAMESPACE
#endif // Hadrons_LanczosUtils_hpp_

1
extras/Hadrons/Makefile.am
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@ -21,6 +21,7 @@ nobase_libHadrons_a_HEADERS = \
GeneticScheduler.hpp \
Global.hpp \
Graph.hpp \
LanczosUtils.hpp \
Module.hpp \
Modules.hpp \
ModuleFactory.hpp \

15
extras/Hadrons/Modules.hpp
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@ -1,20 +1,30 @@
/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: extras/Hadrons/Modules.hpp
Copyright (C) 2015-2018
Author: Antonin Portelli <antonin.portelli@me.com>
Author: Guido Cossu <guido.cossu@ed.ac.uk>
Author: Lanny91 <andrew.lawson@gmail.com>
Author: pretidav <david.preti@csic.es>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
@ -35,11 +45,12 @@ See the full license in the file "LICENSE" in the top level distribution directo
#include <Grid/Hadrons/Modules/MSource/SeqConserved.hpp>
#include <Grid/Hadrons/Modules/MSink/Smear.hpp>
#include <Grid/Hadrons/Modules/MSink/Point.hpp>
#include <Grid/Hadrons/Modules/MSolver/LocalCoherenceLanczos.hpp>
#include <Grid/Hadrons/Modules/MSolver/RBPrecCG.hpp>
#include <Grid/Hadrons/Modules/MGauge/Unit.hpp>
#include <Grid/Hadrons/Modules/MGauge/Random.hpp>
#include <Grid/Hadrons/Modules/MGauge/StochEm.hpp>
#include <Grid/Hadrons/Modules/MGauge/FundtoHirep.hpp>
#include <Grid/Hadrons/Modules/MGauge/StochEm.hpp>
#include <Grid/Hadrons/Modules/MUtilities/TestSeqGamma.hpp>
#include <Grid/Hadrons/Modules/MUtilities/TestSeqConserved.hpp>
#include <Grid/Hadrons/Modules/MLoop/NoiseLoop.hpp>
@ -49,9 +60,11 @@ See the full license in the file "LICENSE" in the top level distribution directo
#include <Grid/Hadrons/Modules/MAction/DWF.hpp>
#include <Grid/Hadrons/Modules/MAction/Wilson.hpp>
#include <Grid/Hadrons/Modules/MAction/WilsonClover.hpp>
#include <Grid/Hadrons/Modules/MAction/ZMobiusDWF.hpp>
#include <Grid/Hadrons/Modules/MScalarSUN/Div.hpp>
#include <Grid/Hadrons/Modules/MScalarSUN/TrMag.hpp>
#include <Grid/Hadrons/Modules/MScalarSUN/TwoPoint.hpp>
#include <Grid/Hadrons/Modules/MScalarSUN/TrPhi.hpp>
#include <Grid/Hadrons/Modules/MScalarSUN/TrKinetic.hpp>
#include <Grid/Hadrons/Modules/MIO/LoadNersc.hpp>
#include <Grid/Hadrons/Modules/MIO/LoadBinary.hpp>

7
extras/Hadrons/Modules/MAction/WilsonClover.hpp
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@ -2,12 +2,13 @@
Grid physics library, www.github.com/paboyle/Grid
Source file: extras/Hadrons/Modules/MAction/Wilson.hpp
Source file: extras/Hadrons/Modules/MAction/WilsonClover.hpp
Copyright (C) 2015
Copyright (C) 2016
Copyright (C) 2015-2018
Author: Antonin Portelli <antonin.portelli@me.com>
Author: Guido Cossu <guido.cossu@ed.ac.uk>
Author: pretidav <david.preti@csic.es>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by

143
extras/Hadrons/Modules/MAction/ZMobiusDWF.hpp Normal file
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@ -0,0 +1,143 @@
/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: extras/Hadrons/Modules/MAction/ZMobiusDWF.hpp
Copyright (C) 2015-2018
Author: Antonin Portelli <antonin.portelli@me.com>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#ifndef Hadrons_MAction_ZMobiusDWF_hpp_
#define Hadrons_MAction_ZMobiusDWF_hpp_
#include <Grid/Hadrons/Global.hpp>
#include <Grid/Hadrons/Module.hpp>
#include <Grid/Hadrons/ModuleFactory.hpp>
BEGIN_HADRONS_NAMESPACE
/******************************************************************************
* ZMobiusDWF *
******************************************************************************/
BEGIN_MODULE_NAMESPACE(MAction)
class ZMobiusDWFPar: Serializable
{
public:
GRID_SERIALIZABLE_CLASS_MEMBERS(ZMobiusDWFPar,
std::string , gauge,
unsigned int , Ls,
double , mass,
double , M5,
double , b,
double , c,
std::vector<std::complex<double>>, omega,
std::string , boundary);
};
template <typename FImpl>
class TZMobiusDWF: public Module<ZMobiusDWFPar>
{
public:
FGS_TYPE_ALIASES(FImpl,);
public:
// constructor
TZMobiusDWF(const std::string name);
// destructor
virtual ~TZMobiusDWF(void) = default;
// dependency relation
virtual std::vector<std::string> getInput(void);
virtual std::vector<std::string> getOutput(void);
// setup
virtual void setup(void);
// execution
virtual void execute(void);
};
MODULE_REGISTER_NS(ZMobiusDWF, TZMobiusDWF<ZFIMPL>, MAction);
/******************************************************************************
* TZMobiusDWF implementation *
******************************************************************************/
// constructor /////////////////////////////////////////////////////////////////
template <typename FImpl>
TZMobiusDWF<FImpl>::TZMobiusDWF(const std::string name)
: Module<ZMobiusDWFPar>(name)
{}
// dependencies/products ///////////////////////////////////////////////////////
template <typename FImpl>
std::vector<std::string> TZMobiusDWF<FImpl>::getInput(void)
{
std::vector<std::string> in = {par().gauge};
return in;
}
template <typename FImpl>
std::vector<std::string> TZMobiusDWF<FImpl>::getOutput(void)
{
std::vector<std::string> out = {getName()};
return out;
}
// setup ///////////////////////////////////////////////////////////////////////
template <typename FImpl>
void TZMobiusDWF<FImpl>::setup(void)
{
LOG(Message) << "Setting up z-Mobius domain wall fermion matrix with m= "
<< par().mass << ", M5= " << par().M5 << ", Ls= " << par().Ls
<< ", b= " << par().b << ", c= " << par().c
<< " using gauge field '" << par().gauge << "'"
<< std::endl;
LOG(Message) << "Omegas: " << std::endl;
for (unsigned int i = 0; i < par().omega.size(); ++i)
{
LOG(Message) << " omega[" << i << "]= " << par().omega[i] << std::endl;
}
LOG(Message) << "Fermion boundary conditions: " << par().boundary
<< std::endl;
env().createGrid(par().Ls);
auto &U = envGet(LatticeGaugeField, par().gauge);
auto &g4 = *env().getGrid();
auto &grb4 = *env().getRbGrid();
auto &g5 = *env().getGrid(par().Ls);
auto &grb5 = *env().getRbGrid(par().Ls);
auto omega = par().omega;
std::vector<Complex> boundary = strToVec<Complex>(par().boundary);
typename ZMobiusFermion<FImpl>::ImplParams implParams(boundary);
envCreateDerived(FMat, ZMobiusFermion<FImpl>, getName(), par().Ls, U, g5,
grb5, g4, grb4, par().mass, par().M5, omega,
par().b, par().c, implParams);
}
// execution ///////////////////////////////////////////////////////////////////
template <typename FImpl>
void TZMobiusDWF<FImpl>::execute(void)
{}
END_MODULE_NAMESPACE
END_HADRONS_NAMESPACE
#endif // Hadrons_MAction_ZMobiusDWF_hpp_

2
extras/Hadrons/Modules/MFermion/GaugeProp.hpp
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@ -7,7 +7,9 @@ Source file: extras/Hadrons/Modules/MFermion/GaugeProp.hpp
Copyright (C) 2015-2018
Author: Antonin Portelli <antonin.portelli@me.com>
Author: Guido Cossu <guido.cossu@ed.ac.uk>
Author: Lanny91 <andrew.lawson@gmail.com>
Author: pretidav <david.preti@csic.es>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by

4
extras/Hadrons/Modules/MGauge/FundtoHirep.cc
View File

@ -57,7 +57,7 @@ std::vector<std::string> TFundtoHirep<Rep>::getOutput(void)
template <typename Rep>
void TFundtoHirep<Rep>::setup(void)
{
env().template registerLattice<typename Rep::LatticeField>(getName());
envCreateLat(typename Rep::LatticeField, getName());
}
// execution ///////////////////////////////////////////////////////////////////
@ -70,6 +70,6 @@ void TFundtoHirep<Rep>::execute(void)
Rep TargetRepresentation(U._grid);
TargetRepresentation.update_representation(U);
typename Rep::LatticeField &URep = *env().template createLattice<typename Rep::LatticeField>(getName());
auto &URep = envGet(typename Rep::LatticeField, getName());
URep = TargetRepresentation.U;
}

7
extras/Hadrons/Modules/MGauge/FundtoHirep.hpp
View File

@ -4,11 +4,10 @@ Grid physics library, www.github.com/paboyle/Grid
Source file: extras/Hadrons/Modules/MGauge/FundtoHirep.hpp
Copyright (C) 2015
Copyright (C) 2016
Copyright (C) 2015-2018
Author: David Preti <david.preti@to.infn.it>
Guido Cossu <guido.cossu@ed.ac.uk>
Author: Antonin Portelli <antonin.portelli@me.com>
Author: pretidav <david.preti@csic.es>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by

2
extras/Hadrons/Modules/MIO/LoadNersc.cc
View File

@ -71,6 +71,4 @@ void TLoadNersc::execute(void)
auto &U = envGet(LatticeGaugeField, getName());
NerscIO::readConfiguration(U, header, fileName);
LOG(Message) << "NERSC header:" << std::endl;
dump_meta_data(header, LOG(Message));
}

4
extras/Hadrons/Modules/MScalarSUN/Div.hpp
View File

@ -35,7 +35,7 @@ See the full license in the file "LICENSE" in the top level distribution directo
BEGIN_HADRONS_NAMESPACE
/******************************************************************************
* Div *
* Divergence of a vector field *
******************************************************************************/
BEGIN_MODULE_NAMESPACE(MScalarSUN)
@ -83,7 +83,7 @@ MODULE_REGISTER_NS(DivSU5, TDiv<ScalarNxNAdjImplR<5>>, MScalarSUN);
MODULE_REGISTER_NS(DivSU6, TDiv<ScalarNxNAdjImplR<6>>, MScalarSUN);
/******************************************************************************
* TDiv implementation *
* TDiv implementation *
******************************************************************************/
// constructor /////////////////////////////////////////////////////////////////
template <typename SImpl>

199
extras/Hadrons/Modules/MScalarSUN/TrKinetic.hpp Normal file
View File

@ -0,0 +1,199 @@
/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: extras/Hadrons/Modules/MScalarSUN/TrKinetic.hpp
Copyright (C) 2015-2018
Author: Antonin Portelli <antonin.portelli@me.com>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#ifndef Hadrons_MScalarSUN_TrKinetic_hpp_
#define Hadrons_MScalarSUN_TrKinetic_hpp_
#include <Grid/Hadrons/Global.hpp>
#include <Grid/Hadrons/Module.hpp>
#include <Grid/Hadrons/ModuleFactory.hpp>
BEGIN_HADRONS_NAMESPACE
/******************************************************************************
* Trace of kinetic term *
******************************************************************************/
BEGIN_MODULE_NAMESPACE(MScalarSUN)
class TrKineticPar: Serializable
{
public:
GRID_SERIALIZABLE_ENUM(DiffType, undef, forward, 1, backward, 2, central, 3);
GRID_SERIALIZABLE_CLASS_MEMBERS(TrKineticPar,
std::string, field,
DiffType, type,
std::string, output);
};
template <typename SImpl>
class TTrKinetic: public Module<TrKineticPar>
{
public:
typedef typename SImpl::Field Field;
typedef typename SImpl::ComplexField ComplexField;
class Result: Serializable
{
public:
GRID_SERIALIZABLE_CLASS_MEMBERS(Result,
std::string, op,
Complex , value);
};
public:
// constructor
TTrKinetic(const std::string name);
// destructor
virtual ~TTrKinetic(void) = default;
// dependency relation
virtual std::vector<std::string> getInput(void);
virtual std::vector<std::string> getOutput(void);
// setup
virtual void setup(void);
// execution
virtual void execute(void);
private:
std::string outName(const unsigned int mu, const unsigned int nu);
std::string bufName(const unsigned int mu);
};
MODULE_REGISTER_NS(TrKineticSU2, TTrKinetic<ScalarNxNAdjImplR<2>>, MScalarSUN);
MODULE_REGISTER_NS(TrKineticSU3, TTrKinetic<ScalarNxNAdjImplR<3>>, MScalarSUN);
MODULE_REGISTER_NS(TrKineticSU4, TTrKinetic<ScalarNxNAdjImplR<4>>, MScalarSUN);
MODULE_REGISTER_NS(TrKineticSU5, TTrKinetic<ScalarNxNAdjImplR<5>>, MScalarSUN);
MODULE_REGISTER_NS(TrKineticSU6, TTrKinetic<ScalarNxNAdjImplR<6>>, MScalarSUN);
/******************************************************************************
* TTrKinetic implementation *
******************************************************************************/
// constructor /////////////////////////////////////////////////////////////////
template <typename SImpl>
TTrKinetic<SImpl>::TTrKinetic(const std::string name)
: Module<TrKineticPar>(name)
{}
// dependencies/products ///////////////////////////////////////////////////////
template <typename SImpl>
std::vector<std::string> TTrKinetic<SImpl>::getInput(void)
{
std::vector<std::string> in = {par().field};
return in;
}
template <typename SImpl>
std::vector<std::string> TTrKinetic<SImpl>::getOutput(void)
{
std::vector<std::string> out ;
for (unsigned int mu = 0; mu < env().getNd(); ++mu)
for (unsigned int nu = mu; nu < env().getNd(); ++nu)
{
out.push_back(outName(mu, nu));
}
return out;
}
// setup ///////////////////////////////////////////////////////////////////////
template <typename SImpl>
void TTrKinetic<SImpl>::setup(void)
{
for (unsigned int mu = 0; mu < env().getNd(); ++mu)
for (unsigned int nu = mu; nu < env().getNd(); ++nu)
{
envCreateLat(ComplexField, outName(mu, nu));
}
envTmp(std::vector<Field>, "der", 1, env().getNd(), env().getGrid());
}
// execution ///////////////////////////////////////////////////////////////////
template <typename SImpl>
void TTrKinetic<SImpl>::execute(void)
{
LOG(Message) << "Computing tr(d_mu phi*d_nu phi) using " << par().type
<< " derivative" << std::endl;
std::vector<Result> result;
auto &phi = envGet(Field, par().field);
envGetTmp(std::vector<Field>, der);
for (unsigned int mu = 0; mu < env().getNd(); ++mu)
{
switch(par().type)
{
case TrKineticPar::DiffType::backward:
der[mu] = phi - Cshift(phi, mu, -1);
break;
case TrKineticPar::DiffType::forward:
der[mu] = Cshift(phi, mu, 1) - phi;
break;
case TrKineticPar::DiffType::central:
der[mu] = 0.5*(Cshift(phi, mu, 1) - Cshift(phi, mu, -1));
break;
}
}
for (unsigned int mu = 0; mu < env().getNd(); ++mu)
for (unsigned int nu = mu; nu < env().getNd(); ++nu)
{
auto &out = envGet(ComplexField, outName(mu, nu));
out = -trace(der[mu]*der[nu]);
if (!par().output.empty())
{
Result r;
r.op = "tr(d_" + std::to_string(mu) + "phi*d_"
+ std::to_string(nu) + "phi)";
r.value = TensorRemove(sum(out));
result.push_back(r);
}
}
if (result.size() > 0)
{
saveResult(par().output, "trkinetic", result);
}
}
// variable name generators ////////////////////////////////////////////////////
template <typename SImpl>
std::string TTrKinetic<SImpl>::outName(const unsigned int mu,
const unsigned int nu)
{
return getName() + "_" + std::to_string(mu) + "_" + std::to_string(nu);
}
template <typename SImpl>
std::string TTrKinetic<SImpl>::bufName(const unsigned int mu)
{
return "d_" + std::to_string(mu);
}
END_MODULE_NAMESPACE
END_HADRONS_NAMESPACE
#endif // Hadrons_MScalarSUN_TrKinetic_hpp_

4
extras/Hadrons/Modules/MScalarSUN/TrMag.hpp
View File

@ -35,7 +35,7 @@ See the full license in the file "LICENSE" in the top level distribution directo
BEGIN_HADRONS_NAMESPACE
/******************************************************************************
* Module to compute tr(mag^n) *
* Trace of powers of the magnetisation *
******************************************************************************/
BEGIN_MODULE_NAMESPACE(MScalarSUN)
@ -117,7 +117,7 @@ template <typename SImpl>
void TTrMag<SImpl>::execute(void)
{
LOG(Message) << "Computing tr(mag^n) for n even up to " << par().maxPow
<< "..." << std::endl;
<< std::endl;
std::vector<Result> result;
auto &phi = envGet(Field, par().field);

4
extras/Hadrons/Modules/MScalarSUN/TrPhi.hpp
View File

@ -35,7 +35,7 @@ See the full license in the file "LICENSE" in the top level distribution directo
BEGIN_HADRONS_NAMESPACE
/******************************************************************************
* Module to compute tr(phi^n) *
* Trace of powers of a scalar field *
******************************************************************************/
BEGIN_MODULE_NAMESPACE(MScalarSUN)
@ -136,7 +136,7 @@ template <typename SImpl>
void TTrPhi<SImpl>::execute(void)
{
LOG(Message) << "Computing tr(phi^n) for n even up to " << par().maxPow
<< "..." << std::endl;
<< std::endl;
std::vector<Result> result;
auto &phi = envGet(Field, par().field);

2
extras/Hadrons/Modules/MScalarSUN/TwoPoint.hpp
View File

@ -87,7 +87,7 @@ MODULE_REGISTER_NS(TwoPointSU5, TTwoPoint<ScalarNxNAdjImplR<5>>, MScalarSUN);
MODULE_REGISTER_NS(TwoPointSU6, TTwoPoint<ScalarNxNAdjImplR<6>>, MScalarSUN);
/******************************************************************************
* TTwoPoint implementation *
* TTwoPoint implementation *
******************************************************************************/
// constructor /////////////////////////////////////////////////////////////////
template <typename SImpl>

249
extras/Hadrons/Modules/MSolver/LocalCoherenceLanczos.hpp Normal file
View File

@ -0,0 +1,249 @@
/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: extras/Hadrons/Modules/MSolver/LocalCoherenceLanczos.hpp
Copyright (C) 2015-2018
Author: Antonin Portelli <antonin.portelli@me.com>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#ifndef Hadrons_MSolver_LocalCoherenceLanczos_hpp_
#define Hadrons_MSolver_LocalCoherenceLanczos_hpp_
#include <Grid/Hadrons/Global.hpp>
#include <Grid/Hadrons/Module.hpp>
#include <Grid/Hadrons/ModuleFactory.hpp>
#include <Grid/Hadrons/LanczosUtils.hpp>
BEGIN_HADRONS_NAMESPACE
/******************************************************************************
* Local coherence Lanczos eigensolver *
*****************************************************************************/
BEGIN_MODULE_NAMESPACE(MSolver)
class LocalCoherenceLanczosPar: Serializable
{
public:
GRID_SERIALIZABLE_CLASS_MEMBERS(LocalCoherenceLanczosPar,
std::string, action,
int, doFine,
int, doCoarse,
LanczosParams, fineParams,
LanczosParams, coarseParams,
ChebyParams, smoother,
RealD, coarseRelaxTol,
std::string, blockSize,
std::string, output);
};
template <typename FImpl, int nBasis>
class TLocalCoherenceLanczos: public Module<LocalCoherenceLanczosPar>
{
public:
FERM_TYPE_ALIASES(FImpl,);
typedef LocalCoherenceLanczos<typename FImpl::SiteSpinor,
typename FImpl::SiteComplex,
nBasis> LCL;
typedef FineEigenPack<FImpl> FinePack;
typedef CoarseEigenPack<FImpl, nBasis> CoarsePack;
typedef HADRONS_DEFAULT_SCHUR_OP<FMat, FermionField> SchurFMat;
public:
// constructor
TLocalCoherenceLanczos(const std::string name);
// destructor
virtual ~TLocalCoherenceLanczos(void) = default;
// dependency relation
virtual std::vector<std::string> getInput(void);
virtual std::vector<std::string> getOutput(void);
// setup
virtual void setup(void);
// execution
virtual void execute(void);
private:
void makeCoarseGrid(void);
private:
std::vector<int> coarseDim_;
int Ls_, cLs_{1};
std::unique_ptr<GridCartesian> coarseGrid4_{nullptr};
std::unique_ptr<GridCartesian> coarseGrid_{nullptr};
std::unique_ptr<GridRedBlackCartesian> coarseGrid4Rb_{nullptr};
std::unique_ptr<GridRedBlackCartesian> coarseGridRb_{nullptr};
std::string fineName_, coarseName_;
};
MODULE_REGISTER_NS(LocalCoherenceLanczos,
ARG(TLocalCoherenceLanczos<FIMPL, HADRONS_DEFAULT_LANCZOS_NBASIS>),
MSolver);
MODULE_REGISTER_NS(ZLocalCoherenceLanczos,
ARG(TLocalCoherenceLanczos<ZFIMPL, HADRONS_DEFAULT_LANCZOS_NBASIS>),
MSolver);
/******************************************************************************
* TLocalCoherenceLanczos implementation *
******************************************************************************/
// constructor /////////////////////////////////////////////////////////////////
template <typename FImpl, int nBasis>
TLocalCoherenceLanczos<FImpl, nBasis>::TLocalCoherenceLanczos(const std::string name)
: Module<LocalCoherenceLanczosPar>(name)
{
fineName_ = getName() + "_fine";
coarseName_ = getName() + "_coarse";
}
// dependencies/products ///////////////////////////////////////////////////////
template <typename FImpl, int nBasis>
std::vector<std::string> TLocalCoherenceLanczos<FImpl, nBasis>::getInput(void)
{
std::vector<std::string> in = {par().action};
return in;
}
template <typename FImpl, int nBasis>
std::vector<std::string> TLocalCoherenceLanczos<FImpl, nBasis>::getOutput(void)
{
std::vector<std::string> out = {fineName_, coarseName_};
return out;
}
// setup ///////////////////////////////////////////////////////////////////////
template <typename FImpl, int nBasis>
void TLocalCoherenceLanczos<FImpl, nBasis>::makeCoarseGrid(void)
{
int nd = env().getNd();
std::vector<int> blockSize = strToVec<int>(par().blockSize);
auto fineDim = env().getDim();
Ls_ = env().getObjectLs(par().action);
env().createGrid(Ls_);
coarseDim_.resize(nd);
for (int d = 0; d < coarseDim_.size(); d++)
{
coarseDim_[d] = fineDim[d]/blockSize[d];
if (coarseDim_[d]*blockSize[d] != fineDim[d])
{
HADRON_ERROR(Size, "Fine dimension " + std::to_string(d)
+ " (" + std::to_string(fineDim[d])
+ ") not divisible by coarse dimension ("
+ std::to_string(coarseDim_[d]) + ")");
}
}
if (blockSize.size() > nd)
{
cLs_ = Ls_/blockSize[nd];
if (cLs_*blockSize[nd] != Ls_)
{
HADRON_ERROR(Size, "Fine Ls (" + std::to_string(Ls_)
+ ") not divisible by coarse Ls ("
+ std::to_string(cLs_) + ")");
}
}
if (Ls_ > 1)
{
coarseGrid4_.reset(SpaceTimeGrid::makeFourDimGrid(
coarseDim_, GridDefaultSimd(nd, vComplex::Nsimd()),
GridDefaultMpi()));
coarseGrid4Rb_.reset(SpaceTimeGrid::makeFourDimRedBlackGrid(coarseGrid4_.get()));
coarseGrid_.reset(SpaceTimeGrid::makeFiveDimGrid(cLs_, coarseGrid4_.get()));
coarseGridRb_.reset(SpaceTimeGrid::makeFiveDimRedBlackGrid(cLs_, coarseGrid4_.get()));
}
else
{
coarseGrid_.reset(SpaceTimeGrid::makeFourDimGrid(
coarseDim_, GridDefaultSimd(nd, vComplex::Nsimd()),
GridDefaultMpi()));
coarseGridRb_.reset(SpaceTimeGrid::makeFourDimRedBlackGrid(coarseGrid_.get()));
}
}
template <typename FImpl, int nBasis>
void TLocalCoherenceLanczos<FImpl, nBasis>::setup(void)
{
LOG(Message) << "Setting up local coherence Lanczos eigensolver for"
<< " action '" << par().action << "' (" << nBasis
<< " eigenvectors)..." << std::endl;
if (!coarseGrid_)
{
makeCoarseGrid();
}
LOG(Message) << "Coarse grid: " << coarseGrid_->GlobalDimensions() << std::endl;
envCreate(FinePack, fineName_, Ls_, par().fineParams.Nm, env().getRbGrid(Ls_));
envCreate(CoarsePack, coarseName_, Ls_, par().coarseParams.Nm, coarseGridRb_.get());
auto &fine = envGet(FinePack, fineName_);
auto &coarse = envGet(CoarsePack, coarseName_);
envTmp(SchurFMat, "mat", Ls_, envGet(FMat, par().action));
envGetTmp(SchurFMat, mat);
envTmp(LCL, "solver", Ls_, env().getRbGrid(Ls_), coarseGridRb_.get(), mat,
Odd, fine.evec, coarse.evec, fine.eval, coarse.eval);
}
// execution ///////////////////////////////////////////////////////////////////
template <typename FImpl, int nBasis>
void TLocalCoherenceLanczos<FImpl, nBasis>::execute(void)
{
auto &finePar = par().fineParams;
auto &coarsePar = par().coarseParams;
auto &fine = envGet(FinePack, fineName_);
auto &coarse = envGet(CoarsePack, coarseName_);
envGetTmp(LCL, solver);
if (par().doFine)
{
LOG(Message) << "Performing fine grid IRL -- Nstop= "
<< finePar.Nstop << ", Nk= " << finePar.Nk << ", Nm= "
<< finePar.Nm << std::endl;
solver.calcFine(finePar.Cheby, finePar.Nstop, finePar.Nk, finePar.Nm,
finePar.resid,finePar.MaxIt, finePar.betastp,
finePar.MinRes);
solver.testFine(finePar.resid*100.0);
LOG(Message) << "Orthogonalising" << std::endl;
solver.Orthogonalise();
if (!par().output.empty())
{
fine.write(par().output + "_fine");
}
}
if (par().doCoarse)
{
LOG(Message) << "Performing coarse grid IRL -- Nstop= "
<< coarsePar.Nstop << ", Nk= " << coarsePar.Nk << ", Nm= "
<< coarsePar.Nm << std::endl;
solver.calcCoarse(coarsePar.Cheby, par().smoother, par().coarseRelaxTol,
coarsePar.Nstop, coarsePar.Nk, coarsePar.Nm,
coarsePar.resid, coarsePar.MaxIt, coarsePar.betastp,
coarsePar.MinRes);
solver.testCoarse(coarsePar.resid*100.0, par().smoother,
par().coarseRelaxTol);
if (!par().output.empty())
{
coarse.write(par().output + "_coarse");
}
}
}
END_MODULE_NAMESPACE
END_HADRONS_NAMESPACE
#endif // Hadrons_MSolver_LocalCoherenceLanczos_hpp_

16
extras/Hadrons/Modules/MSolver/RBPrecCG.hpp
View File

@ -43,9 +43,10 @@ BEGIN_MODULE_NAMESPACE(MSolver)
class RBPrecCGPar: Serializable
{
public:
GRID_SERIALIZABLE_CLASS_MEMBERS(RBPrecCGPar,
std::string, action,
double , residual);
GRID_SERIALIZABLE_CLASS_MEMBERS(RBPrecCGPar ,
std::string , action,
unsigned int , maxIteration,
double , residual);
};
template <typename FImpl>
@ -69,7 +70,8 @@ protected:
virtual void execute(void);
};
MODULE_REGISTER_NS(RBPrecCG, TRBPrecCG<FIMPL>, MSolver);
MODULE_REGISTER_NS(RBPrecCG, TRBPrecCG<FIMPL>, MSolver);
MODULE_REGISTER_NS(ZRBPrecCG, TRBPrecCG<ZFIMPL>, MSolver);
/******************************************************************************
* TRBPrecCG template implementation *
@ -117,14 +119,16 @@ void TRBPrecCG<FImpl>::setup(void)
auto &mat = envGet(FMat, par().action);
auto solver = [&mat, this](FermionField &sol, const FermionField &source)
{
ConjugateGradient<FermionField> cg(par().residual, 10000);
SchurRedBlackDiagMooeeSolve<FermionField> schurSolver(cg);
ConjugateGradient<FermionField> cg(par().residual,
par().maxIteration);
HADRONS_DEFAULT_SCHUR_SOLVE<FermionField> schurSolver(cg);
schurSolver(mat, source, sol);
};
envCreate(SolverFn, getName(), Ls, solver);
}
// execution ///////////////////////////////////////////////////////////////////
template <typename FImpl>
void TRBPrecCG<FImpl>::execute(void)

10
extras/Hadrons/VirtualMachine.cc
View File

@ -424,11 +424,17 @@ void VirtualMachine::memoryProfile(const unsigned int address)
cleanEnvironment();
for (auto &in: m->getInput())
{
memoryProfile(env().getObjectModule(in));
if (!env().hasCreatedObject(in))
{
memoryProfile(env().getObjectModule(in));
}
}
for (auto &ref: m->getReference())
{
memoryProfile(env().getObjectModule(ref));
if (!env().hasCreatedObject(ref))
{
memoryProfile(env().getObjectModule(ref));
}
}
m->setup();
updateProfile(address);

7
extras/Hadrons/modules.inc
View File

@ -1,6 +1,4 @@
modules_cc =\
Modules/MScalar/ChargedProp.cc \
Modules/MScalar/FreeProp.cc \
Modules/MContraction/WeakHamiltonianEye.cc \
Modules/MContraction/WeakNeutral4ptDisc.cc \
Modules/MContraction/WeakHamiltonianNonEye.cc \
@ -30,11 +28,12 @@ modules_hpp =\
Modules/MSource/SeqConserved.hpp \
Modules/MSink/Smear.hpp \
Modules/MSink/Point.hpp \
Modules/MSolver/LocalCoherenceLanczos.hpp \
Modules/MSolver/RBPrecCG.hpp \
Modules/MGauge/Unit.hpp \
Modules/MGauge/Random.hpp \
Modules/MGauge/StochEm.hpp \
Modules/MGauge/FundtoHirep.hpp \
Modules/MGauge/StochEm.hpp \
Modules/MUtilities/TestSeqGamma.hpp \
Modules/MUtilities/TestSeqConserved.hpp \
Modules/MLoop/NoiseLoop.hpp \
@ -44,10 +43,12 @@ modules_hpp =\
Modules/MAction/DWF.hpp \
Modules/MAction/Wilson.hpp \
Modules/MAction/WilsonClover.hpp \
Modules/MAction/ZMobiusDWF.hpp \
Modules/MScalarSUN/Div.hpp \
Modules/MScalarSUN/TrMag.hpp \
Modules/MScalarSUN/TwoPoint.hpp \
Modules/MScalarSUN/TrPhi.hpp \
Modules/MScalarSUN/TrKinetic.hpp \
Modules/MIO/LoadNersc.hpp \
Modules/MIO/LoadBinary.hpp