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Merge branch 'develop' of https://github.com/paboyle/Grid into feature/Lanczos

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Chulwoo Jung 2017-07-24 20:35:29 -04:00
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265
README.md
View File

@ -18,10 +18,41 @@
License: GPL v2.
Last update Nov 2016.
Last update June 2017.
_Please do not send pull requests to the `master` branch which is reserved for releases._
### Description
This library provides data parallel C++ container classes with internal memory layout
that is transformed to map efficiently to SIMD architectures. CSHIFT facilities
are provided, similar to HPF and cmfortran, and user control is given over the mapping of
array indices to both MPI tasks and SIMD processing elements.
* Identically shaped arrays then be processed with perfect data parallelisation.
* Such identically shaped arrays are called conformable arrays.
The transformation is based on the observation that Cartesian array processing involves
identical processing to be performed on different regions of the Cartesian array.
The library will both geometrically decompose into MPI tasks and across SIMD lanes.
Local vector loops are parallelised with OpenMP pragmas.
Data parallel array operations can then be specified with a SINGLE data parallel paradigm, but
optimally use MPI, OpenMP and SIMD parallelism under the hood. This is a significant simplification
for most programmers.
The layout transformations are parametrised by the SIMD vector length. This adapts according to the architecture.
Presently SSE4, ARM NEON (128 bits) AVX, AVX2, QPX (256 bits), IMCI and AVX512 (512 bits) targets are supported.
These are presented as `vRealF`, `vRealD`, `vComplexF`, and `vComplexD` internal vector data types.
The corresponding scalar types are named `RealF`, `RealD`, `ComplexF` and `ComplexD`.
MPI, OpenMP, and SIMD parallelism are present in the library.
Please see [this paper](https://arxiv.org/abs/1512.03487) for more detail.
### Compilers
Intel ICPC v16.0.3 and later
@ -56,35 +87,25 @@ When you file an issue, please go though the following checklist:
6. Attach the output of `make V=1`.
7. Describe the issue and any previous attempt to solve it. If relevant, show how to reproduce the issue using a minimal working example.
### Required libraries
Grid requires:
[GMP](https://gmplib.org/),
### Description
This library provides data parallel C++ container classes with internal memory layout
that is transformed to map efficiently to SIMD architectures. CSHIFT facilities
are provided, similar to HPF and cmfortran, and user control is given over the mapping of
array indices to both MPI tasks and SIMD processing elements.
[MPFR](http://www.mpfr.org/)
* Identically shaped arrays then be processed with perfect data parallelisation.
* Such identically shaped arrays are called conformable arrays.
Bootstrapping grid downloads and uses for internal dense matrix (non-QCD operations) the Eigen library.
The transformation is based on the observation that Cartesian array processing involves
identical processing to be performed on different regions of the Cartesian array.
Grid optionally uses:
The library will both geometrically decompose into MPI tasks and across SIMD lanes.
Local vector loops are parallelised with OpenMP pragmas.
[HDF5](https://support.hdfgroup.org/HDF5/)
Data parallel array operations can then be specified with a SINGLE data parallel paradigm, but
optimally use MPI, OpenMP and SIMD parallelism under the hood. This is a significant simplification
for most programmers.
[LIME](http://usqcd-software.github.io/c-lime/) for ILDG and SciDAC file format support.
The layout transformations are parametrised by the SIMD vector length. This adapts according to the architecture.
Presently SSE4 (128 bit) AVX, AVX2, QPX (256 bit), IMCI, and AVX512 (512 bit) targets are supported (ARM NEON on the way).
[FFTW](http://www.fftw.org) either generic version or via the Intel MKL library.
These are presented as `vRealF`, `vRealD`, `vComplexF`, and `vComplexD` internal vector data types. These may be useful in themselves for other programmers.
The corresponding scalar types are named `RealF`, `RealD`, `ComplexF` and `ComplexD`.
LAPACK either generic version or Intel MKL library.
MPI, OpenMP, and SIMD parallelism are present in the library.
Please see https://arxiv.org/abs/1512.03487 for more detail.
### Quick start
First, start by cloning the repository:
@ -155,7 +176,6 @@ The following options can be use with the `--enable-comms=` option to target dif
| `none` | no communications |
| `mpi[-auto]` | MPI communications |
| `mpi3[-auto]` | MPI communications using MPI 3 shared memory |
| `mpi3l[-auto]` | MPI communications using MPI 3 shared memory and leader model |
| `shmem ` | Cray SHMEM communications |
For the MPI interfaces the optional `-auto` suffix instructs the `configure` scripts to determine all the necessary compilation and linking flags. This is done by extracting the informations from the MPI wrapper specified in the environment variable `MPICXX` (if not specified `configure` will scan though a list of default names). The `-auto` suffix is not supported by the Cray environment wrapper scripts. Use the standard versions instead.
@ -173,7 +193,8 @@ The following options can be use with the `--enable-simd=` option to target diff
| `AVXFMA4` | AVX (256 bit) + FMA4 |
| `AVX2` | AVX 2 (256 bit) |
| `AVX512` | AVX 512 bit |
| `QPX` | QPX (256 bit) |
| `NEONv8` | [ARM NEON](http://infocenter.arm.com/help/index.jsp?topic=/com.arm.doc.den0024a/ch07s03.html) (128 bit) |
| `QPX` | IBM QPX (256 bit) |
Alternatively, some CPU codenames can be directly used:
@ -195,21 +216,205 @@ The following configuration is recommended for the Intel Knights Landing platfor
``` bash
../configure --enable-precision=double\
--enable-simd=KNL \
--enable-comms=mpi-auto \
--with-gmp=<path> \
--with-mpfr=<path> \
--enable-comms=mpi-auto \
--enable-mkl \
CXX=icpc MPICXX=mpiicpc
```
The MKL flag enables use of BLAS and FFTW from the Intel Math Kernels Library.
where `<path>` is the UNIX prefix where GMP and MPFR are installed. If you are working on a Cray machine that does not use the `mpiicpc` wrapper, please use:
If you are working on a Cray machine that does not use the `mpiicpc` wrapper, please use:
``` bash
../configure --enable-precision=double\
--enable-simd=KNL \
--enable-comms=mpi \
--with-gmp=<path> \
--with-mpfr=<path> \
--enable-mkl \
CXX=CC CC=cc
```
```
If gmp and mpfr are NOT in standard places (/usr/) these flags may be needed:
``` bash
--with-gmp=<path> \
--with-mpfr=<path> \
```
where `<path>` is the UNIX prefix where GMP and MPFR are installed.
Knight's Landing with Intel Omnipath adapters with two adapters per node
presently performs better with use of more than one rank per node, using shared memory
for interior communication. This is the mpi3 communications implementation.
We recommend four ranks per node for best performance, but optimum is local volume dependent.
``` bash
../configure --enable-precision=double\
--enable-simd=KNL \
--enable-comms=mpi3-auto \
--enable-mkl \
CC=icpc MPICXX=mpiicpc
```
### Build setup for Intel Haswell Xeon platform
The following configuration is recommended for the Intel Haswell platform:
``` bash
../configure --enable-precision=double\
--enable-simd=AVX2 \
--enable-comms=mpi3-auto \
--enable-mkl \
CXX=icpc MPICXX=mpiicpc
```
The MKL flag enables use of BLAS and FFTW from the Intel Math Kernels Library.
If gmp and mpfr are NOT in standard places (/usr/) these flags may be needed:
``` bash
--with-gmp=<path> \
--with-mpfr=<path> \
```
where `<path>` is the UNIX prefix where GMP and MPFR are installed.
If you are working on a Cray machine that does not use the `mpiicpc` wrapper, please use:
``` bash
../configure --enable-precision=double\
--enable-simd=AVX2 \
--enable-comms=mpi3 \
--enable-mkl \
CXX=CC CC=cc
```
Since Dual socket nodes are commonplace, we recommend MPI-3 as the default with the use of
one rank per socket. If using the Intel MPI library, threads should be pinned to NUMA domains using
```
export I_MPI_PIN=1
```
This is the default.
### Build setup for Intel Skylake Xeon platform
The following configuration is recommended for the Intel Skylake platform:
``` bash
../configure --enable-precision=double\
--enable-simd=AVX512 \
--enable-comms=mpi3 \
--enable-mkl \
CXX=mpiicpc
```
The MKL flag enables use of BLAS and FFTW from the Intel Math Kernels Library.
If gmp and mpfr are NOT in standard places (/usr/) these flags may be needed:
``` bash
--with-gmp=<path> \
--with-mpfr=<path> \
```
where `<path>` is the UNIX prefix where GMP and MPFR are installed.
If you are working on a Cray machine that does not use the `mpiicpc` wrapper, please use:
``` bash
../configure --enable-precision=double\
--enable-simd=AVX512 \
--enable-comms=mpi3 \
--enable-mkl \
CXX=CC CC=cc
```
Since Dual socket nodes are commonplace, we recommend MPI-3 as the default with the use of
one rank per socket. If using the Intel MPI library, threads should be pinned to NUMA domains using
```
export I_MPI_PIN=1
```
This is the default.
#### Expected Skylake Gold 6148 dual socket (single prec, single node 20+20 cores) performance using NUMA MPI mapping):
mpirun -n 2 benchmarks/Benchmark_dwf --grid 16.16.16.16 --mpi 2.1.1.1 --cacheblocking 2.2.2.2 --dslash-asm --shm 1024 --threads 18
TBA
### Build setup for AMD EPYC / RYZEN
The AMD EPYC is a multichip module comprising 32 cores spread over four distinct chips each with 8 cores.
So, even with a single socket node there is a quad-chip module. Dual socket nodes with 64 cores total
are common. Each chip within the module exposes a separate NUMA domain.
There are four NUMA domains per socket and we recommend one MPI rank per NUMA domain.
MPI-3 is recommended with the use of four ranks per socket,
and 8 threads per rank.
The following configuration is recommended for the AMD EPYC platform.
``` bash
../configure --enable-precision=double\
--enable-simd=AVX2 \
--enable-comms=mpi3 \
CXX=mpicxx
```
If gmp and mpfr are NOT in standard places (/usr/) these flags may be needed:
``` bash
--with-gmp=<path> \
--with-mpfr=<path> \
```
where `<path>` is the UNIX prefix where GMP and MPFR are installed.
Using MPICH and g++ v4.9.2, best performance can be obtained using explicit GOMP_CPU_AFFINITY flags for each MPI rank.
This can be done by invoking MPI on a wrapper script omp_bind.sh to handle this.
It is recommended to run 8 MPI ranks on a single dual socket AMD EPYC, with 8 threads per rank using MPI3 and
shared memory to communicate within this node:
mpirun -np 8 ./omp_bind.sh ./Benchmark_dwf --mpi 2.2.2.1 --dslash-unroll --threads 8 --grid 16.16.16.16 --cacheblocking 4.4.4.4
Where omp_bind.sh does the following:
```
#!/bin/bash
numanode=` expr $PMI_RANK % 8 `
basecore=`expr $numanode \* 16`
core0=`expr $basecore + 0 `
core1=`expr $basecore + 2 `
core2=`expr $basecore + 4 `
core3=`expr $basecore + 6 `
core4=`expr $basecore + 8 `
core5=`expr $basecore + 10 `
core6=`expr $basecore + 12 `
core7=`expr $basecore + 14 `
export GOMP_CPU_AFFINITY="$core0 $core1 $core2 $core3 $core4 $core5 $core6 $core7"
echo GOMP_CUP_AFFINITY $GOMP_CPU_AFFINITY
$@
```
Performance:
#### Expected AMD EPYC 7601 dual socket (single prec, single node 32+32 cores) performance using NUMA MPI mapping):
mpirun -np 8 ./omp_bind.sh ./Benchmark_dwf --threads 8 --mpi 2.2.2.1 --dslash-unroll --grid 16.16.16.16 --cacheblocking 4.4.4.4
TBA
### Build setup for BlueGene/Q
To be written...
### Build setup for ARM Neon
To be written...
### Build setup for laptops, other compilers, non-cluster builds
Many versions of g++ and clang++ work with Grid, and involve merely replacing CXX (and MPICXX),
and omit the enable-mkl flag.
Single node builds are enabled with
```
--enable-comms=none
```
FFTW support that is not in the default search path may then enabled with
```
--with-fftw=<installpath>
```
BLAS will not be compiled in by default, and Lanczos will default to Eigen diagonalisation.

31
TODO
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@ -1,23 +1,30 @@
TODO:
---------------
Peter's work list:
2)- Precision conversion and sort out localConvert <--
3)- Remove DenseVector, DenseMatrix; Use Eigen instead. <-- started
4)- Binary I/O speed up & x-strips
-- Profile CG, BlockCG, etc... Flop count/rate -- PARTIAL, time but no flop/s yet
-- Physical propagator interface
-- Conserved currents
-- GaugeFix into central location
-- Multigrid Wilson and DWF, compare to other Multigrid implementations
-- HDCR resume
Large item work list:
1)- MultiRHS with spread out extra dim -- Go through filesystem with SciDAC I/O
2)- Christoph's local basis expansion Lanczos
3)- BG/Q port and check
4)- Precision conversion and sort out localConvert <-- partial
- Consistent linear solver flop count/rate -- PARTIAL, time but no flop/s yet
5)- Physical propagator interface
6)- Conserved currents
7)- Multigrid Wilson and DWF, compare to other Multigrid implementations
8)- HDCR resume
Recent DONE
-- Lanczos Remove DenseVector, DenseMatrix; Use Eigen instead. <-- DONE
-- GaugeFix into central location <-- DONE
-- Scidac and Ildg metadata handling <-- DONE
-- Binary I/O MPI2 IO <-- DONE
-- Binary I/O speed up & x-strips <-- DONE
-- Cut down the exterior overhead <-- DONE
-- Interior legs from SHM comms <-- DONE
-- Half-precision comms <-- DONE
-- Merge high precision reduction into develop
-- multiRHS DWF; benchmark on Cori/BNL for comms elimination
-- Merge high precision reduction into develop <-- DONE
-- BlockCG, BCGrQ <-- DONE
-- multiRHS DWF; benchmark on Cori/BNL for comms elimination <-- DONE
-- slice* linalg routines for multiRHS, BlockCG
-----

127
benchmarks/Benchmark_comms.cc
View File

@ -66,7 +66,7 @@ int main (int argc, char ** argv)
int threads = GridThread::GetThreads();
std::cout<<GridLogMessage << "Grid is setup to use "<<threads<<" threads"<<std::endl;
int Nloop=500;
int Nloop=100;
int nmu=0;
int maxlat=24;
for(int mu=0;mu<Nd;mu++) if (mpi_layout[mu]>1) nmu++;
@ -88,6 +88,9 @@ int main (int argc, char ** argv)
lat*mpi_layout[3]});
GridCartesian Grid(latt_size,simd_layout,mpi_layout);
RealD Nrank = Grid._Nprocessors;
RealD Nnode = Grid.NodeCount();
RealD ppn = Nrank/Nnode;
std::vector<std::vector<HalfSpinColourVectorD> > xbuf(8,std::vector<HalfSpinColourVectorD>(lat*lat*lat*Ls));
std::vector<std::vector<HalfSpinColourVectorD> > rbuf(8,std::vector<HalfSpinColourVectorD>(lat*lat*lat*Ls));
@ -132,13 +135,13 @@ int main (int argc, char ** argv)
}
Grid.SendToRecvFromComplete(requests);
Grid.Barrier();
double stop=usecond();
t_time[i] = stop-start; // microseconds
double stop=usecond();
t_time[i] = stop-start; // microseconds
}
timestat.statistics(t_time);
double dbytes = bytes;
double dbytes = bytes*ppn;
double xbytes = dbytes*2.0*ncomm;
double rbytes = xbytes;
double bidibytes = xbytes+rbytes;
@ -165,6 +168,9 @@ int main (int argc, char ** argv)
std::vector<int> latt_size ({lat,lat,lat,lat});
GridCartesian Grid(latt_size,simd_layout,mpi_layout);
RealD Nrank = Grid._Nprocessors;
RealD Nnode = Grid.NodeCount();
RealD ppn = Nrank/Nnode;
std::vector<std::vector<HalfSpinColourVectorD> > xbuf(8,std::vector<HalfSpinColourVectorD>(lat*lat*lat*Ls));
std::vector<std::vector<HalfSpinColourVectorD> > rbuf(8,std::vector<HalfSpinColourVectorD>(lat*lat*lat*Ls));
@ -213,14 +219,14 @@ int main (int argc, char ** argv)
}
}
Grid.Barrier();
double stop=usecond();
t_time[i] = stop-start; // microseconds
double stop=usecond();
t_time[i] = stop-start; // microseconds
}
timestat.statistics(t_time);
double dbytes = bytes;
double dbytes = bytes*ppn;
double xbytes = dbytes*2.0*ncomm;
double rbytes = xbytes;
double bidibytes = xbytes+rbytes;
@ -251,6 +257,9 @@ int main (int argc, char ** argv)
lat*mpi_layout[3]});
GridCartesian Grid(latt_size,simd_layout,mpi_layout);
RealD Nrank = Grid._Nprocessors;
RealD Nnode = Grid.NodeCount();
RealD ppn = Nrank/Nnode;
std::vector<HalfSpinColourVectorD *> xbuf(8);
std::vector<HalfSpinColourVectorD *> rbuf(8);
@ -258,59 +267,66 @@ int main (int argc, char ** argv)
for(int d=0;d<8;d++){
xbuf[d] = (HalfSpinColourVectorD *)Grid.ShmBufferMalloc(lat*lat*lat*Ls*sizeof(HalfSpinColourVectorD));
rbuf[d] = (HalfSpinColourVectorD *)Grid.ShmBufferMalloc(lat*lat*lat*Ls*sizeof(HalfSpinColourVectorD));
bzero((void *)xbuf[d],lat*lat*lat*Ls*sizeof(HalfSpinColourVectorD));
bzero((void *)rbuf[d],lat*lat*lat*Ls*sizeof(HalfSpinColourVectorD));
}
int ncomm;
int bytes=lat*lat*lat*Ls*sizeof(HalfSpinColourVectorD);
double dbytes;
for(int i=0;i<Nloop;i++){
double start=usecond();
double start=usecond();
dbytes=0;
ncomm=0;
std::vector<CartesianCommunicator::CommsRequest_t> requests;
ncomm=0;
for(int mu=0;mu<4;mu++){
if (mpi_layout[mu]>1 ) {
ncomm++;
int comm_proc=1;
int xmit_to_rank;
int recv_from_rank;
Grid.ShiftedRanks(mu,comm_proc,xmit_to_rank,recv_from_rank);
Grid.StencilSendToRecvFromBegin(requests,
(void *)&xbuf[mu][0],
xmit_to_rank,
(void *)&rbuf[mu][0],
recv_from_rank,
bytes);
dbytes+=
Grid.StencilSendToRecvFromBegin(requests,
(void *)&xbuf[mu][0],
xmit_to_rank,
(void *)&rbuf[mu][0],
recv_from_rank,
bytes);
comm_proc = mpi_layout[mu]-1;
Grid.ShiftedRanks(mu,comm_proc,xmit_to_rank,recv_from_rank);
Grid.StencilSendToRecvFromBegin(requests,
(void *)&xbuf[mu+4][0],
xmit_to_rank,
(void *)&rbuf[mu+4][0],
recv_from_rank,
bytes);
dbytes+=
Grid.StencilSendToRecvFromBegin(requests,
(void *)&xbuf[mu+4][0],
xmit_to_rank,
(void *)&rbuf[mu+4][0],
recv_from_rank,
bytes);
}
}
Grid.StencilSendToRecvFromComplete(requests);
Grid.Barrier();
double stop=usecond();
t_time[i] = stop-start; // microseconds
double stop=usecond();
t_time[i] = stop-start; // microseconds
}
timestat.statistics(t_time);
double dbytes = bytes;
double xbytes = dbytes*2.0*ncomm;
double rbytes = xbytes;
double bidibytes = xbytes+rbytes;
dbytes=dbytes*ppn;
double xbytes = dbytes*0.5;
double rbytes = dbytes*0.5;
double bidibytes = dbytes;
std::cout<<GridLogMessage << std::setw(4) << lat<<"\t"<<Ls<<"\t"
<<std::setw(11) << bytes<< std::fixed << std::setprecision(1) << std::setw(7)
@ -338,6 +354,9 @@ int main (int argc, char ** argv)
lat*mpi_layout[3]});
GridCartesian Grid(latt_size,simd_layout,mpi_layout);
RealD Nrank = Grid._Nprocessors;
RealD Nnode = Grid.NodeCount();
RealD ppn = Nrank/Nnode;
std::vector<HalfSpinColourVectorD *> xbuf(8);
std::vector<HalfSpinColourVectorD *> rbuf(8);
@ -345,16 +364,18 @@ int main (int argc, char ** argv)
for(int d=0;d<8;d++){
xbuf[d] = (HalfSpinColourVectorD *)Grid.ShmBufferMalloc(lat*lat*lat*Ls*sizeof(HalfSpinColourVectorD));
rbuf[d] = (HalfSpinColourVectorD *)Grid.ShmBufferMalloc(lat*lat*lat*Ls*sizeof(HalfSpinColourVectorD));
bzero((void *)xbuf[d],lat*lat*lat*Ls*sizeof(HalfSpinColourVectorD));
bzero((void *)rbuf[d],lat*lat*lat*Ls*sizeof(HalfSpinColourVectorD));
}
int ncomm;
int bytes=lat*lat*lat*Ls*sizeof(HalfSpinColourVectorD);
double dbytes;
for(int i=0;i<Nloop;i++){
double start=usecond();
double start=usecond();
std::vector<CartesianCommunicator::CommsRequest_t> requests;
dbytes=0;
ncomm=0;
for(int mu=0;mu<4;mu++){
@ -366,41 +387,43 @@ int main (int argc, char ** argv)
int recv_from_rank;
Grid.ShiftedRanks(mu,comm_proc,xmit_to_rank,recv_from_rank);
Grid.StencilSendToRecvFromBegin(requests,
(void *)&xbuf[mu][0],
xmit_to_rank,
(void *)&rbuf[mu][0],
recv_from_rank,
bytes);
dbytes+=
Grid.StencilSendToRecvFromBegin(requests,
(void *)&xbuf[mu][0],
xmit_to_rank,
(void *)&rbuf[mu][0],
recv_from_rank,
bytes);
Grid.StencilSendToRecvFromComplete(requests);
requests.resize(0);
comm_proc = mpi_layout[mu]-1;
Grid.ShiftedRanks(mu,comm_proc,xmit_to_rank,recv_from_rank);
Grid.StencilSendToRecvFromBegin(requests,
(void *)&xbuf[mu+4][0],
xmit_to_rank,
(void *)&rbuf[mu+4][0],
recv_from_rank,
bytes);
dbytes+=
Grid.StencilSendToRecvFromBegin(requests,
(void *)&xbuf[mu+4][0],
xmit_to_rank,
(void *)&rbuf[mu+4][0],
recv_from_rank,
bytes);
Grid.StencilSendToRecvFromComplete(requests);
requests.resize(0);
}
}
Grid.Barrier();
double stop=usecond();
t_time[i] = stop-start; // microseconds
Grid.Barrier();
double stop=usecond();
t_time[i] = stop-start; // microseconds
}
timestat.statistics(t_time);
double dbytes = bytes;
double xbytes = dbytes*2.0*ncomm;
double rbytes = xbytes;
double bidibytes = xbytes+rbytes;
dbytes=dbytes*ppn;
double xbytes = dbytes*0.5;
double rbytes = dbytes*0.5;
double bidibytes = dbytes;
std::cout<<GridLogMessage << std::setw(4) << lat<<"\t"<<Ls<<"\t"

18
benchmarks/Benchmark_dwf.cc
View File

@ -165,7 +165,7 @@ int main (int argc, char ** argv)
std::cout << GridLogMessage<< "*****************************************************************" <<std::endl;
DomainWallFermionR Dw(Umu,*FGrid,*FrbGrid,*UGrid,*UrbGrid,mass,M5);
int ncall =1000;
int ncall =500;
if (1) {
FGrid->Barrier();
Dw.ZeroCounters();
@ -302,6 +302,7 @@ int main (int argc, char ** argv)
std::cout<< "sD ERR \n " << err <<std::endl;
}
assert(sum < 1.0e-4);
if(1){
std::cout << GridLogMessage<< "*********************************************************" <<std::endl;
@ -381,8 +382,23 @@ int main (int argc, char ** argv)
}
assert(error<1.0e-4);
}
if(0){
std::cout << "Single cache warm call to sDw.Dhop " <<std::endl;
for(int i=0;i< PerformanceCounter::NumTypes(); i++ ){
sDw.Dhop(ssrc,sresult,0);
PerformanceCounter Counter(i);
Counter.Start();
sDw.Dhop(ssrc,sresult,0);
Counter.Stop();
Counter.Report();
}
}
}
if (1)
{ // Naive wilson dag implementation
ref = zero;

60
benchmarks/Benchmark_memory_bandwidth.cc
View File

@ -55,21 +55,21 @@ int main (int argc, char ** argv)
std::cout<<GridLogMessage << "===================================================================================================="<<std::endl;
std::cout<<GridLogMessage << " L "<<"\t\t"<<"bytes"<<"\t\t\t"<<"GB/s"<<"\t\t"<<"Gflop/s"<<"\t\t seconds"<<std::endl;
std::cout<<GridLogMessage << "----------------------------------------------------------"<<std::endl;
uint64_t lmax=44;
#define NLOOP (1*lmax*lmax*lmax*lmax/vol)
for(int lat=4;lat<=lmax;lat+=4){
uint64_t lmax=96;
#define NLOOP (10*lmax*lmax*lmax*lmax/vol)
for(int lat=8;lat<=lmax;lat+=8){
std::vector<int> latt_size ({lat*mpi_layout[0],lat*mpi_layout[1],lat*mpi_layout[2],lat*mpi_layout[3]});
int vol = latt_size[0]*latt_size[1]*latt_size[2]*latt_size[3];
int64_t vol= latt_size[0]*latt_size[1]*latt_size[2]*latt_size[3];
GridCartesian Grid(latt_size,simd_layout,mpi_layout);
uint64_t Nloop=NLOOP;
// GridParallelRNG pRNG(&Grid); pRNG.SeedFixedIntegers(std::vector<int>({45,12,81,9});
// GridParallelRNG pRNG(&Grid); pRNG.SeedFixedIntegers(std::vector<int>({45,12,81,9}));
LatticeVec z(&Grid); //random(pRNG,z);
LatticeVec x(&Grid); //random(pRNG,x);
LatticeVec y(&Grid); //random(pRNG,y);
LatticeVec z(&Grid);// random(pRNG,z);
LatticeVec x(&Grid);// random(pRNG,x);
LatticeVec y(&Grid);// random(pRNG,y);
double a=2.0;
@ -83,7 +83,7 @@ int main (int argc, char ** argv)
double time = (stop-start)/Nloop*1000;
double flops=vol*Nvec*2;// mul,add
double bytes=3*vol*Nvec*sizeof(Real);
double bytes=3.0*vol*Nvec*sizeof(Real);
std::cout<<GridLogMessage<<std::setprecision(3) << lat<<"\t\t"<<bytes<<" \t\t"<<bytes/time<<"\t\t"<<flops/time<<"\t\t"<<(stop-start)/1000./1000.<<std::endl;
}
@ -94,17 +94,17 @@ int main (int argc, char ** argv)
std::cout<<GridLogMessage << " L "<<"\t\t"<<"bytes"<<"\t\t\t"<<"GB/s"<<"\t\t"<<"Gflop/s"<<"\t\t seconds"<<std::endl;
std::cout<<GridLogMessage << "----------------------------------------------------------"<<std::endl;
for(int lat=4;lat<=lmax;lat+=4){
for(int lat=8;lat<=lmax;lat+=8){
std::vector<int> latt_size ({lat*mpi_layout[0],lat*mpi_layout[1],lat*mpi_layout[2],lat*mpi_layout[3]});
int vol = latt_size[0]*latt_size[1]*latt_size[2]*latt_size[3];
int64_t vol= latt_size[0]*latt_size[1]*latt_size[2]*latt_size[3];
GridCartesian Grid(latt_size,simd_layout,mpi_layout);
// GridParallelRNG pRNG(&Grid); pRNG.SeedFixedIntegers(std::vector<int>({45,12,81,9});
// GridParallelRNG pRNG(&Grid); pRNG.SeedFixedIntegers(std::vector<int>({45,12,81,9}));
LatticeVec z(&Grid); //random(pRNG,z);
LatticeVec x(&Grid); //random(pRNG,x);
LatticeVec y(&Grid); //random(pRNG,y);
LatticeVec z(&Grid);// random(pRNG,z);
LatticeVec x(&Grid);// random(pRNG,x);
LatticeVec y(&Grid);// random(pRNG,y);
double a=2.0;
uint64_t Nloop=NLOOP;
@ -119,7 +119,7 @@ int main (int argc, char ** argv)
double time = (stop-start)/Nloop*1000;
double flops=vol*Nvec*2;// mul,add
double bytes=3*vol*Nvec*sizeof(Real);
double bytes=3.0*vol*Nvec*sizeof(Real);
std::cout<<GridLogMessage<<std::setprecision(3) << lat<<"\t\t"<<bytes<<" \t\t"<<bytes/time<<"\t\t"<<flops/time<<"\t\t"<<(stop-start)/1000./1000.<<std::endl;
}
@ -129,20 +129,20 @@ int main (int argc, char ** argv)
std::cout<<GridLogMessage << "===================================================================================================="<<std::endl;
std::cout<<GridLogMessage << " L "<<"\t\t"<<"bytes"<<"\t\t\t"<<"GB/s"<<"\t\t"<<"Gflop/s"<<"\t\t seconds"<<std::endl;
for(int lat=4;lat<=lmax;lat+=4){
for(int lat=8;lat<=lmax;lat+=8){
std::vector<int> latt_size ({lat*mpi_layout[0],lat*mpi_layout[1],lat*mpi_layout[2],lat*mpi_layout[3]});
int vol = latt_size[0]*latt_size[1]*latt_size[2]*latt_size[3];
int64_t vol= latt_size[0]*latt_size[1]*latt_size[2]*latt_size[3];
uint64_t Nloop=NLOOP;
GridCartesian Grid(latt_size,simd_layout,mpi_layout);
// GridParallelRNG pRNG(&Grid); pRNG.SeedFixedIntegers(std::vector<int>({45,12,81,9});
// GridParallelRNG pRNG(&Grid); pRNG.SeedFixedIntegers(std::vector<int>({45,12,81,9}));
LatticeVec z(&Grid); //random(pRNG,z);
LatticeVec x(&Grid); //random(pRNG,x);
LatticeVec y(&Grid); //random(pRNG,y);
LatticeVec z(&Grid);// random(pRNG,z);
LatticeVec x(&Grid);// random(pRNG,x);
LatticeVec y(&Grid);// random(pRNG,y);
RealD a=2.0;
@ -154,7 +154,7 @@ int main (int argc, char ** argv)
double stop=usecond();
double time = (stop-start)/Nloop*1000;
double bytes=2*vol*Nvec*sizeof(Real);
double bytes=2.0*vol*Nvec*sizeof(Real);
double flops=vol*Nvec*1;// mul
std::cout<<GridLogMessage <<std::setprecision(3) << lat<<"\t\t"<<bytes<<" \t\t"<<bytes/time<<"\t\t"<<flops/time<<"\t\t"<<(stop-start)/1000./1000.<<std::endl;
@ -166,17 +166,17 @@ int main (int argc, char ** argv)
std::cout<<GridLogMessage << " L "<<"\t\t"<<"bytes"<<"\t\t\t"<<"GB/s"<<"\t\t"<<"Gflop/s"<<"\t\t seconds"<<std::endl;
std::cout<<GridLogMessage << "----------------------------------------------------------"<<std::endl;
for(int lat=4;lat<=lmax;lat+=4){
for(int lat=8;lat<=lmax;lat+=8){
std::vector<int> latt_size ({lat*mpi_layout[0],lat*mpi_layout[1],lat*mpi_layout[2],lat*mpi_layout[3]});
int vol = latt_size[0]*latt_size[1]*latt_size[2]*latt_size[3];
int64_t vol= latt_size[0]*latt_size[1]*latt_size[2]*latt_size[3];
uint64_t Nloop=NLOOP;
GridCartesian Grid(latt_size,simd_layout,mpi_layout);
// GridParallelRNG pRNG(&Grid); pRNG.SeedFixedIntegers(std::vector<int>({45,12,81,9});
LatticeVec z(&Grid); //random(pRNG,z);
LatticeVec x(&Grid); //random(pRNG,x);
LatticeVec y(&Grid); //random(pRNG,y);
// GridParallelRNG pRNG(&Grid); pRNG.SeedFixedIntegers(std::vector<int>({45,12,81,9}));
LatticeVec z(&Grid);// random(pRNG,z);
LatticeVec x(&Grid);// random(pRNG,x);
LatticeVec y(&Grid);// random(pRNG,y);
RealD a=2.0;
Real nn;
double start=usecond();
@ -187,7 +187,7 @@ int main (int argc, char ** argv)
double stop=usecond();
double time = (stop-start)/Nloop*1000;
double bytes=vol*Nvec*sizeof(Real);
double bytes=1.0*vol*Nvec*sizeof(Real);
double flops=vol*Nvec*2;// mul,add
std::cout<<GridLogMessage<<std::setprecision(3) << lat<<"\t\t"<<bytes<<" \t\t"<<bytes/time<<"\t\t"<<flops/time<< "\t\t"<<(stop-start)/1000./1000.<< "\t\t " <<std::endl;

54
benchmarks/Benchmark_su3.cc
View File

@ -35,14 +35,14 @@ using namespace Grid::QCD;
int main (int argc, char ** argv)
{
Grid_init(&argc,&argv);
#define LMAX (32)
#define LMAX (64)
int Nloop=200;
int64_t Nloop=20;
std::vector<int> simd_layout = GridDefaultSimd(Nd,vComplex::Nsimd());
std::vector<int> mpi_layout = GridDefaultMpi();
int threads = GridThread::GetThreads();
int64_t threads = GridThread::GetThreads();
std::cout<<GridLogMessage << "Grid is setup to use "<<threads<<" threads"<<std::endl;
std::cout<<GridLogMessage << "===================================================================================================="<<std::endl;
@ -54,16 +54,16 @@ int main (int argc, char ** argv)
for(int lat=2;lat<=LMAX;lat+=2){
std::vector<int> latt_size ({lat*mpi_layout[0],lat*mpi_layout[1],lat*mpi_layout[2],lat*mpi_layout[3]});
int vol = latt_size[0]*latt_size[1]*latt_size[2]*latt_size[3];
int64_t vol = latt_size[0]*latt_size[1]*latt_size[2]*latt_size[3];
GridCartesian Grid(latt_size,simd_layout,mpi_layout);
// GridParallelRNG pRNG(&Grid); pRNG.SeedFixedIntegers(std::vector<int>({45,12,81,9});
GridParallelRNG pRNG(&Grid); pRNG.SeedFixedIntegers(std::vector<int>({45,12,81,9}));
LatticeColourMatrix z(&Grid);// random(pRNG,z);
LatticeColourMatrix x(&Grid);// random(pRNG,x);
LatticeColourMatrix y(&Grid);// random(pRNG,y);
LatticeColourMatrix z(&Grid); random(pRNG,z);
LatticeColourMatrix x(&Grid); random(pRNG,x);
LatticeColourMatrix y(&Grid); random(pRNG,y);
double start=usecond();
for(int i=0;i<Nloop;i++){
for(int64_t i=0;i<Nloop;i++){
x=x*y;
}
double stop=usecond();
@ -86,17 +86,17 @@ int main (int argc, char ** argv)
for(int lat=2;lat<=LMAX;lat+=2){
std::vector<int> latt_size ({lat*mpi_layout[0],lat*mpi_layout[1],lat*mpi_layout[2],lat*mpi_layout[3]});
int vol = latt_size[0]*latt_size[1]*latt_size[2]*latt_size[3];
int64_t vol = latt_size[0]*latt_size[1]*latt_size[2]*latt_size[3];
GridCartesian Grid(latt_size,simd_layout,mpi_layout);
// GridParallelRNG pRNG(&Grid); pRNG.SeedFixedIntegers(std::vector<int>({45,12,81,9});
GridParallelRNG pRNG(&Grid); pRNG.SeedFixedIntegers(std::vector<int>({45,12,81,9}));
LatticeColourMatrix z(&Grid); //random(pRNG,z);
LatticeColourMatrix x(&Grid); //random(pRNG,x);
LatticeColourMatrix y(&Grid); //random(pRNG,y);
LatticeColourMatrix z(&Grid); random(pRNG,z);
LatticeColourMatrix x(&Grid); random(pRNG,x);
LatticeColourMatrix y(&Grid); random(pRNG,y);
double start=usecond();
for(int i=0;i<Nloop;i++){
for(int64_t i=0;i<Nloop;i++){
z=x*y;
}
double stop=usecond();
@ -117,17 +117,17 @@ int main (int argc, char ** argv)
for(int lat=2;lat<=LMAX;lat+=2){
std::vector<int> latt_size ({lat*mpi_layout[0],lat*mpi_layout[1],lat*mpi_layout[2],lat*mpi_layout[3]});
int vol = latt_size[0]*latt_size[1]*latt_size[2]*latt_size[3];
int64_t vol = latt_size[0]*latt_size[1]*latt_size[2]*latt_size[3];
GridCartesian Grid(latt_size,simd_layout,mpi_layout);
// GridParallelRNG pRNG(&Grid); pRNG.SeedFixedIntegers(std::vector<int>({45,12,81,9});
GridParallelRNG pRNG(&Grid); pRNG.SeedFixedIntegers(std::vector<int>({45,12,81,9}));
LatticeColourMatrix z(&Grid); //random(pRNG,z);
LatticeColourMatrix x(&Grid); //random(pRNG,x);
LatticeColourMatrix y(&Grid); //random(pRNG,y);
LatticeColourMatrix z(&Grid); random(pRNG,z);
LatticeColourMatrix x(&Grid); random(pRNG,x);
LatticeColourMatrix y(&Grid); random(pRNG,y);
double start=usecond();
for(int i=0;i<Nloop;i++){
for(int64_t i=0;i<Nloop;i++){
mult(z,x,y);
}
double stop=usecond();
@ -148,17 +148,17 @@ int main (int argc, char ** argv)
for(int lat=2;lat<=LMAX;lat+=2){
std::vector<int> latt_size ({lat*mpi_layout[0],lat*mpi_layout[1],lat*mpi_layout[2],lat*mpi_layout[3]});
int vol = latt_size[0]*latt_size[1]*latt_size[2]*latt_size[3];
int64_t vol = latt_size[0]*latt_size[1]*latt_size[2]*latt_size[3];
GridCartesian Grid(latt_size,simd_layout,mpi_layout);
// GridParallelRNG pRNG(&Grid); pRNG.SeedFixedIntegers(std::vector<int>({45,12,81,9});
GridParallelRNG pRNG(&Grid); pRNG.SeedFixedIntegers(std::vector<int>({45,12,81,9}));
LatticeColourMatrix z(&Grid); //random(pRNG,z);
LatticeColourMatrix x(&Grid); //random(pRNG,x);
LatticeColourMatrix y(&Grid); //random(pRNG,y);
LatticeColourMatrix z(&Grid); random(pRNG,z);
LatticeColourMatrix x(&Grid); random(pRNG,x);
LatticeColourMatrix y(&Grid); random(pRNG,y);
double start=usecond();
for(int i=0;i<Nloop;i++){
for(int64_t i=0;i<Nloop;i++){
mac(z,x,y);
}
double stop=usecond();

2
bootstrap.sh
View File

@ -3,7 +3,7 @@
EIGEN_URL='http://bitbucket.org/eigen/eigen/get/3.3.3.tar.bz2'
echo "-- deploying Eigen source..."
#wget ${EIGEN_URL} --no-check-certificate
wget ${EIGEN_URL} --no-check-certificate
./scripts/update_eigen.sh `basename ${EIGEN_URL}`
#rm `basename ${EIGEN_URL}`

15
configure.ac
View File

@ -51,6 +51,7 @@ AC_CHECK_HEADERS(malloc/malloc.h)
AC_CHECK_HEADERS(malloc.h)
AC_CHECK_HEADERS(endian.h)
AC_CHECK_HEADERS(execinfo.h)
AC_CHECK_HEADERS(numaif.h)
AC_CHECK_DECLS([ntohll],[], [], [[#include <arpa/inet.h>]])
AC_CHECK_DECLS([be64toh],[], [], [[#include <arpa/inet.h>]])
@ -184,6 +185,15 @@ AC_SEARCH_LIBS([limeCreateReader], [lime],
In order to use ILGG file format please install or provide the correct path to your installation
Info at: http://usqcd.jlab.org/usqcd-docs/c-lime/)])
AC_SEARCH_LIBS([crc32], [z],
[AC_DEFINE([HAVE_ZLIB], [1], [Define to 1 if you have the `LIBZ' library])]
[have_zlib=true] [LIBS="${LIBS} -lz"],
[AC_MSG_ERROR(zlib library was not found in your system.)])
AC_SEARCH_LIBS([move_pages], [numa],
[AC_DEFINE([HAVE_LIBNUMA], [1], [Define to 1 if you have the `LIBNUMA' library])]
[have_libnuma=true] [LIBS="${LIBS} -lnuma"],
[AC_MSG_WARN(libnuma library was not found in your system. Some optimisations will not apply)])
AC_SEARCH_LIBS([H5Fopen], [hdf5_cpp],
[AC_DEFINE([HAVE_HDF5], [1], [Define to 1 if you have the `HDF5' library])]
@ -237,6 +247,7 @@ case ${ax_cv_cxx_compiler_vendor} in
SIMD_FLAGS='';;
KNL)
AC_DEFINE([AVX512],[1],[AVX512 intrinsics])
AC_DEFINE([KNL],[1],[Knights landing processor])
SIMD_FLAGS='-march=knl';;
GEN)
AC_DEFINE([GEN],[1],[generic vector code])
@ -244,6 +255,9 @@ case ${ax_cv_cxx_compiler_vendor} in
[generic SIMD vector width (in bytes)])
SIMD_GEN_WIDTH_MSG=" (width= $ac_gen_simd_width)"
SIMD_FLAGS='';;
NEONv8)
AC_DEFINE([NEONV8],[1],[ARMv8 NEON])
SIMD_FLAGS='-march=armv8-a';;
QPX|BGQ)
AC_DEFINE([QPX],[1],[QPX intrinsics for BG/Q])
SIMD_FLAGS='';;
@ -272,6 +286,7 @@ case ${ax_cv_cxx_compiler_vendor} in
SIMD_FLAGS='';;
KNL)
AC_DEFINE([AVX512],[1],[AVX512 intrinsics for Knights Landing])
AC_DEFINE([KNL],[1],[Knights landing processor])
SIMD_FLAGS='-xmic-avx512';;
GEN)
AC_DEFINE([GEN],[1],[generic vector code])

56
extras/Hadrons/Environment.cc
View File

@ -41,9 +41,10 @@ using namespace Hadrons;
// constructor /////////////////////////////////////////////////////////////////
Environment::Environment(void)
{
nd_ = GridDefaultLatt().size();
dim_ = GridDefaultLatt();
nd_ = dim_.size();
grid4d_.reset(SpaceTimeGrid::makeFourDimGrid(
GridDefaultLatt(), GridDefaultSimd(nd_, vComplex::Nsimd()),
dim_, GridDefaultSimd(nd_, vComplex::Nsimd()),
GridDefaultMpi()));
gridRb4d_.reset(SpaceTimeGrid::makeFourDimRedBlackGrid(grid4d_.get()));
auto loc = getGrid()->LocalDimensions();
@ -132,6 +133,16 @@ unsigned int Environment::getNd(void) const
return nd_;
}
std::vector<int> Environment::getDim(void) const
{
return dim_;
}
int Environment::getDim(const unsigned int mu) const
{
return dim_[mu];
}
// random number generator /////////////////////////////////////////////////////
void Environment::setSeed(const std::vector<int> &seed)
{
@ -271,6 +282,21 @@ std::string Environment::getModuleType(const std::string name) const
return getModuleType(getModuleAddress(name));
}
std::string Environment::getModuleNamespace(const unsigned int address) const
{
std::string type = getModuleType(address), ns;
auto pos2 = type.rfind("::");
auto pos1 = type.rfind("::", pos2 - 2);
return type.substr(pos1 + 2, pos2 - pos1 - 2);
}
std::string Environment::getModuleNamespace(const std::string name) const
{
return getModuleNamespace(getModuleAddress(name));
}
bool Environment::hasModule(const unsigned int address) const
{
return (address < module_.size());
@ -492,7 +518,14 @@ std::string Environment::getObjectType(const unsigned int address) const
{
if (hasRegisteredObject(address))
{
return typeName(object_[address].type);
if (object_[address].type)
{
return typeName(object_[address].type);
}
else
{
return "<no type>";
}
}
else if (hasObject(address))
{
@ -532,6 +565,23 @@ Environment::Size Environment::getObjectSize(const std::string name) const
return getObjectSize(getObjectAddress(name));
}
unsigned int Environment::getObjectModule(const unsigned int address) const
{
if (hasObject(address))
{
return object_[address].module;
}
else
{
HADRON_ERROR("no object with address " + std::to_string(address));
}
}
unsigned int Environment::getObjectModule(const std::string name) const
{
return getObjectModule(getObjectAddress(name));
}
unsigned int Environment::getObjectLs(const unsigned int address) const
{
if (hasRegisteredObject(address))

44
extras/Hadrons/Environment.hpp
View File

@ -106,6 +106,8 @@ public:
void createGrid(const unsigned int Ls);
GridCartesian * getGrid(const unsigned int Ls = 1) const;
GridRedBlackCartesian * getRbGrid(const unsigned int Ls = 1) const;
std::vector<int> getDim(void) const;
int getDim(const unsigned int mu) const;
unsigned int getNd(void) const;
// random number generator
void setSeed(const std::vector<int> &seed);
@ -131,6 +133,8 @@ public:
std::string getModuleName(const unsigned int address) const;
std::string getModuleType(const unsigned int address) const;
std::string getModuleType(const std::string name) const;
std::string getModuleNamespace(const unsigned int address) const;
std::string getModuleNamespace(const std::string name) const;
bool hasModule(const unsigned int address) const;
bool hasModule(const std::string name) const;
Graph<unsigned int> makeModuleGraph(void) const;
@ -171,6 +175,8 @@ public:
std::string getObjectType(const std::string name) const;
Size getObjectSize(const unsigned int address) const;
Size getObjectSize(const std::string name) const;
unsigned int getObjectModule(const unsigned int address) const;
unsigned int getObjectModule(const std::string name) const;
unsigned int getObjectLs(const unsigned int address) const;
unsigned int getObjectLs(const std::string name) const;
bool hasObject(const unsigned int address) const;
@ -181,6 +187,10 @@ public:
bool hasCreatedObject(const std::string name) const;
bool isObject5d(const unsigned int address) const;
bool isObject5d(const std::string name) const;
template <typename T>
bool isObjectOfType(const unsigned int address) const;
template <typename T>
bool isObjectOfType(const std::string name) const;
Environment::Size getTotalSize(void) const;
void addOwnership(const unsigned int owner,
const unsigned int property);
@ -197,6 +207,7 @@ private:
bool dryRun_{false};
unsigned int traj_, locVol_;
// grids
std::vector<int> dim_;
GridPt grid4d_;
std::map<unsigned int, GridPt> grid5d_;
GridRbPt gridRb4d_;
@ -343,7 +354,7 @@ T * Environment::getObject(const unsigned int address) const
else
{
HADRON_ERROR("object with address " + std::to_string(address) +
" does not have type '" + typeid(T).name() +
" does not have type '" + typeName(&typeid(T)) +
"' (has type '" + getObjectType(address) + "')");
}
}
@ -380,6 +391,37 @@ T * Environment::createLattice(const std::string name)
return createLattice<T>(getObjectAddress(name));
}
template <typename T>
bool Environment::isObjectOfType(const unsigned int address) const
{
if (hasRegisteredObject(address))
{
if (auto h = dynamic_cast<Holder<T> *>(object_[address].data.get()))
{
return true;
}
else
{
return false;
}
}
else if (hasObject(address))
{
HADRON_ERROR("object with address " + std::to_string(address) +
" exists but is not registered");
}
else
{
HADRON_ERROR("no object with address " + std::to_string(address));
}
}
template <typename T>
bool Environment::isObjectOfType(const std::string name) const
{
return isObjectOfType<T>(getObjectAddress(name));
}
END_HADRONS_NAMESPACE
#endif // Hadrons_Environment_hpp_

28
extras/Hadrons/Global.hpp
View File

@ -51,23 +51,43 @@ using Grid::operator<<;
* error with GCC 5 (clang & GCC 6 compile fine without it).
*/
// FIXME: find a way to do that in a more general fashion
#ifndef FIMPL
#define FIMPL WilsonImplR
#endif
#ifndef SIMPL
#define SIMPL ScalarImplCR
#endif
BEGIN_HADRONS_NAMESPACE
// type aliases
#define TYPE_ALIASES(FImpl, suffix)\
#define FERM_TYPE_ALIASES(FImpl, suffix)\
typedef FermionOperator<FImpl> FMat##suffix; \
typedef typename FImpl::FermionField FermionField##suffix; \
typedef typename FImpl::PropagatorField PropagatorField##suffix; \
typedef typename FImpl::SitePropagator SitePropagator##suffix; \
typedef typename FImpl::DoubledGaugeField DoubledGaugeField##suffix;\
typedef std::function<void(FermionField##suffix &, \
typedef std::vector<typename FImpl::SitePropagator::scalar_object> \
SlicedPropagator##suffix;
#define GAUGE_TYPE_ALIASES(FImpl, suffix)\
typedef typename FImpl::DoubledGaugeField DoubledGaugeField##suffix;
#define SCALAR_TYPE_ALIASES(SImpl, suffix)\
typedef typename SImpl::Field ScalarField##suffix;\
typedef typename SImpl::Field PropagatorField##suffix;
#define SOLVER_TYPE_ALIASES(FImpl, suffix)\
typedef std::function<void(FermionField##suffix &,\
const FermionField##suffix &)> SolverFn##suffix;
#define SINK_TYPE_ALIASES(suffix)\
typedef std::function<SlicedPropagator##suffix(const PropagatorField##suffix &)> SinkFn##suffix;
#define FGS_TYPE_ALIASES(FImpl, suffix)\
FERM_TYPE_ALIASES(FImpl, suffix)\
GAUGE_TYPE_ALIASES(FImpl, suffix)\
SOLVER_TYPE_ALIASES(FImpl, suffix)
// logger
class HadronsLogger: public Logger
{

35
extras/Hadrons/Modules.hpp
View File

@ -1,31 +1,3 @@
/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: extras/Hadrons/Modules.hpp
Copyright (C) 2015
Copyright (C) 2016
Author: Antonin Portelli <antonin.portelli@me.com>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#include <Grid/Hadrons/Modules/MAction/DWF.hpp>
#include <Grid/Hadrons/Modules/MAction/Wilson.hpp>
#include <Grid/Hadrons/Modules/MContraction/Baryon.hpp>
@ -36,13 +8,18 @@ See the full license in the file "LICENSE" in the top level distribution directo
#include <Grid/Hadrons/Modules/MContraction/WeakHamiltonianEye.hpp>
#include <Grid/Hadrons/Modules/MContraction/WeakHamiltonianNonEye.hpp>
#include <Grid/Hadrons/Modules/MContraction/WeakNeutral4ptDisc.hpp>
#include <Grid/Hadrons/Modules/MFermion/GaugeProp.hpp>
#include <Grid/Hadrons/Modules/MGauge/Load.hpp>
#include <Grid/Hadrons/Modules/MGauge/Random.hpp>
#include <Grid/Hadrons/Modules/MGauge/StochEm.hpp>
#include <Grid/Hadrons/Modules/MGauge/Unit.hpp>
#include <Grid/Hadrons/Modules/MLoop/NoiseLoop.hpp>
#include <Grid/Hadrons/Modules/MScalar/ChargedProp.hpp>
#include <Grid/Hadrons/Modules/MScalar/FreeProp.hpp>
#include <Grid/Hadrons/Modules/MScalar/Scalar.hpp>
#include <Grid/Hadrons/Modules/MSink/Point.hpp>
#include <Grid/Hadrons/Modules/MSolver/RBPrecCG.hpp>
#include <Grid/Hadrons/Modules/MSource/Point.hpp>
#include <Grid/Hadrons/Modules/MSource/SeqGamma.hpp>
#include <Grid/Hadrons/Modules/MSource/Wall.hpp>
#include <Grid/Hadrons/Modules/MSource/Z2.hpp>
#include <Grid/Hadrons/Modules/Quark.hpp>

18
extras/Hadrons/Modules/MAction/DWF.hpp
View File

@ -27,8 +27,8 @@ See the full license in the file "LICENSE" in the top level distribution directo
*************************************************************************************/
/* END LEGAL */
#ifndef Hadrons_DWF_hpp_
#define Hadrons_DWF_hpp_
#ifndef Hadrons_MAction_DWF_hpp_
#define Hadrons_MAction_DWF_hpp_
#include <Grid/Hadrons/Global.hpp>
#include <Grid/Hadrons/Module.hpp>
@ -48,14 +48,15 @@ public:
std::string, gauge,
unsigned int, Ls,
double , mass,
double , M5);
double , M5,
std::string , boundary);
};
template <typename FImpl>
class TDWF: public Module<DWFPar>
{
public:
TYPE_ALIASES(FImpl,);
FGS_TYPE_ALIASES(FImpl,);
public:
// constructor
TDWF(const std::string name);
@ -116,14 +117,19 @@ void TDWF<FImpl>::execute(void)
<< par().mass << ", M5= " << par().M5 << " and Ls= "
<< par().Ls << " using gauge field '" << par().gauge << "'"
<< std::endl;
LOG(Message) << "Fermion boundary conditions: " << par().boundary
<< std::endl;
env().createGrid(par().Ls);
auto &U = *env().template getObject<LatticeGaugeField>(par().gauge);
auto &g4 = *env().getGrid();
auto &grb4 = *env().getRbGrid();
auto &g5 = *env().getGrid(par().Ls);
auto &grb5 = *env().getRbGrid(par().Ls);
std::vector<Complex> boundary = strToVec<Complex>(par().boundary);
typename DomainWallFermion<FImpl>::ImplParams implParams(boundary);
FMat *fMatPt = new DomainWallFermion<FImpl>(U, g5, grb5, g4, grb4,
par().mass, par().M5);
par().mass, par().M5,
implParams);
env().setObject(getName(), fMatPt);
}
@ -131,4 +137,4 @@ END_MODULE_NAMESPACE
END_HADRONS_NAMESPACE
#endif // Hadrons_DWF_hpp_
#endif // Hadrons_MAction_DWF_hpp_

16
extras/Hadrons/Modules/MAction/Wilson.hpp
View File

@ -27,8 +27,8 @@ See the full license in the file "LICENSE" in the top level distribution directo
*************************************************************************************/
/* END LEGAL */
#ifndef Hadrons_Wilson_hpp_
#define Hadrons_Wilson_hpp_
#ifndef Hadrons_MAction_Wilson_hpp_
#define Hadrons_MAction_Wilson_hpp_
#include <Grid/Hadrons/Global.hpp>
#include <Grid/Hadrons/Module.hpp>
@ -46,14 +46,15 @@ class WilsonPar: Serializable
public:
GRID_SERIALIZABLE_CLASS_MEMBERS(WilsonPar,
std::string, gauge,
double , mass);
double , mass,
std::string, boundary);
};
template <typename FImpl>
class TWilson: public Module<WilsonPar>
{
public:
TYPE_ALIASES(FImpl,);
FGS_TYPE_ALIASES(FImpl,);
public:
// constructor
TWilson(const std::string name);
@ -112,10 +113,15 @@ void TWilson<FImpl>::execute()
{
LOG(Message) << "Setting up TWilson fermion matrix with m= " << par().mass
<< " using gauge field '" << par().gauge << "'" << std::endl;
LOG(Message) << "Fermion boundary conditions: " << par().boundary
<< std::endl;
auto &U = *env().template getObject<LatticeGaugeField>(par().gauge);
auto &grid = *env().getGrid();
auto &gridRb = *env().getRbGrid();
FMat *fMatPt = new WilsonFermion<FImpl>(U, grid, gridRb, par().mass);
std::vector<Complex> boundary = strToVec<Complex>(par().boundary);
typename WilsonFermion<FImpl>::ImplParams implParams(boundary);
FMat *fMatPt = new WilsonFermion<FImpl>(U, grid, gridRb, par().mass,
implParams);
env().setObject(getName(), fMatPt);
}

14
extras/Hadrons/Modules/MContraction/Baryon.hpp
View File

@ -27,8 +27,8 @@ See the full license in the file "LICENSE" in the top level distribution directo
*************************************************************************************/
/* END LEGAL */
#ifndef Hadrons_Baryon_hpp_
#define Hadrons_Baryon_hpp_
#ifndef Hadrons_MContraction_Baryon_hpp_
#define Hadrons_MContraction_Baryon_hpp_
#include <Grid/Hadrons/Global.hpp>
#include <Grid/Hadrons/Module.hpp>
@ -55,9 +55,9 @@ template <typename FImpl1, typename FImpl2, typename FImpl3>
class TBaryon: public Module<BaryonPar>
{
public:
TYPE_ALIASES(FImpl1, 1);
TYPE_ALIASES(FImpl2, 2);
TYPE_ALIASES(FImpl3, 3);
FERM_TYPE_ALIASES(FImpl1, 1);
FERM_TYPE_ALIASES(FImpl2, 2);
FERM_TYPE_ALIASES(FImpl3, 3);
class Result: Serializable
{
public:
@ -121,11 +121,11 @@ void TBaryon<FImpl1, FImpl2, FImpl3>::execute(void)
// FIXME: do contractions
write(writer, "meson", result);
// write(writer, "meson", result);
}
END_MODULE_NAMESPACE
END_HADRONS_NAMESPACE
#endif // Hadrons_Baryon_hpp_
#endif // Hadrons_MContraction_Baryon_hpp_

8
extras/Hadrons/Modules/MContraction/DiscLoop.hpp
View File

@ -26,8 +26,8 @@ See the full license in the file "LICENSE" in the top level distribution directo
*************************************************************************************/
/* END LEGAL */
#ifndef Hadrons_DiscLoop_hpp_
#define Hadrons_DiscLoop_hpp_
#ifndef Hadrons_MContraction_DiscLoop_hpp_
#define Hadrons_MContraction_DiscLoop_hpp_
#include <Grid/Hadrons/Global.hpp>
#include <Grid/Hadrons/Module.hpp>
@ -52,7 +52,7 @@ public:
template <typename FImpl>
class TDiscLoop: public Module<DiscLoopPar>
{
TYPE_ALIASES(FImpl,);
FERM_TYPE_ALIASES(FImpl,);
class Result: Serializable
{
public:
@ -141,4 +141,4 @@ END_MODULE_NAMESPACE
END_HADRONS_NAMESPACE
#endif // Hadrons_DiscLoop_hpp_
#endif // Hadrons_MContraction_DiscLoop_hpp_

12
extras/Hadrons/Modules/MContraction/Gamma3pt.hpp
View File

@ -26,8 +26,8 @@ See the full license in the file "LICENSE" in the top level distribution directo
*************************************************************************************/
/* END LEGAL */
#ifndef Hadrons_Gamma3pt_hpp_
#define Hadrons_Gamma3pt_hpp_
#ifndef Hadrons_MContraction_Gamma3pt_hpp_
#define Hadrons_MContraction_Gamma3pt_hpp_
#include <Grid/Hadrons/Global.hpp>
#include <Grid/Hadrons/Module.hpp>
@ -72,9 +72,9 @@ public:
template <typename FImpl1, typename FImpl2, typename FImpl3>
class TGamma3pt: public Module<Gamma3ptPar>
{
TYPE_ALIASES(FImpl1, 1);
TYPE_ALIASES(FImpl2, 2);
TYPE_ALIASES(FImpl3, 3);
FERM_TYPE_ALIASES(FImpl1, 1);
FERM_TYPE_ALIASES(FImpl2, 2);
FERM_TYPE_ALIASES(FImpl3, 3);
class Result: Serializable
{
public:
@ -167,4 +167,4 @@ END_MODULE_NAMESPACE
END_HADRONS_NAMESPACE
#endif // Hadrons_Gamma3pt_hpp_
#endif // Hadrons_MContraction_Gamma3pt_hpp_

105
extras/Hadrons/Modules/MContraction/Meson.hpp
View File

@ -29,8 +29,8 @@ See the full license in the file "LICENSE" in the top level distribution directo
*************************************************************************************/
/* END LEGAL */
#ifndef Hadrons_Meson_hpp_
#define Hadrons_Meson_hpp_
#ifndef Hadrons_MContraction_Meson_hpp_
#define Hadrons_MContraction_Meson_hpp_
#include <Grid/Hadrons/Global.hpp>
#include <Grid/Hadrons/Module.hpp>
@ -69,7 +69,7 @@ public:
std::string, q1,
std::string, q2,
std::string, gammas,
std::string, mom,
std::string, sink,
std::string, output);
};
@ -77,8 +77,10 @@ template <typename FImpl1, typename FImpl2>
class TMeson: public Module<MesonPar>
{
public:
TYPE_ALIASES(FImpl1, 1);
TYPE_ALIASES(FImpl2, 2);
FERM_TYPE_ALIASES(FImpl1, 1);
FERM_TYPE_ALIASES(FImpl2, 2);
FERM_TYPE_ALIASES(ScalarImplCR, Scalar);
SINK_TYPE_ALIASES(Scalar);
class Result: Serializable
{
public:
@ -115,7 +117,7 @@ TMeson<FImpl1, FImpl2>::TMeson(const std::string name)
template <typename FImpl1, typename FImpl2>
std::vector<std::string> TMeson<FImpl1, FImpl2>::getInput(void)
{
std::vector<std::string> input = {par().q1, par().q2};
std::vector<std::string> input = {par().q1, par().q2, par().sink};
return input;
}
@ -131,12 +133,11 @@ std::vector<std::string> TMeson<FImpl1, FImpl2>::getOutput(void)
template <typename FImpl1, typename FImpl2>
void TMeson<FImpl1, FImpl2>::parseGammaString(std::vector<GammaPair> &gammaList)
{
gammaList.clear();
// Determine gamma matrices to insert at source/sink.
if (par().gammas.compare("all") == 0)
{
// Do all contractions.
unsigned int n_gam = Ns * Ns;
gammaList.resize(n_gam*n_gam);
for (unsigned int i = 1; i < Gamma::nGamma; i += 2)
{
for (unsigned int j = 1; j < Gamma::nGamma; j += 2)
@ -155,6 +156,9 @@ void TMeson<FImpl1, FImpl2>::parseGammaString(std::vector<GammaPair> &gammaList)
// execution ///////////////////////////////////////////////////////////////////
#define mesonConnected(q1, q2, gSnk, gSrc) \
(g5*(gSnk))*(q1)*(adj(gSrc)*g5)*adj(q2)
template <typename FImpl1, typename FImpl2>
void TMeson<FImpl1, FImpl2>::execute(void)
{
@ -162,43 +166,72 @@ void TMeson<FImpl1, FImpl2>::execute(void)
<< " quarks '" << par().q1 << "' and '" << par().q2 << "'"
<< std::endl;
CorrWriter writer(par().output);
PropagatorField1 &q1 = *env().template getObject<PropagatorField1>(par().q1);
PropagatorField2 &q2 = *env().template getObject<PropagatorField2>(par().q2);
LatticeComplex c(env().getGrid());
Gamma g5(Gamma::Algebra::Gamma5);
std::vector<GammaPair> gammaList;
CorrWriter writer(par().output);
std::vector<TComplex> buf;
std::vector<Result> result;
std::vector<Real> p;
p = strToVec<Real>(par().mom);
LatticeComplex ph(env().getGrid()), coor(env().getGrid());
Complex i(0.0,1.0);
ph = zero;
for(unsigned int mu = 0; mu < env().getNd(); mu++)
{
LatticeCoordinate(coor, mu);
ph = ph + p[mu]*coor*((1./(env().getGrid()->_fdimensions[mu])));
}
ph = exp((Real)(2*M_PI)*i*ph);
Gamma g5(Gamma::Algebra::Gamma5);
std::vector<GammaPair> gammaList;
int nt = env().getDim(Tp);
parseGammaString(gammaList);
result.resize(gammaList.size());
for (unsigned int i = 0; i < result.size(); ++i)
{
Gamma gSnk(gammaList[i].first);
Gamma gSrc(gammaList[i].second);
c = trace((g5*gSnk)*q1*(adj(gSrc)*g5)*adj(q2))*ph;
sliceSum(c, buf, Tp);
result[i].gamma_snk = gammaList[i].first;
result[i].gamma_src = gammaList[i].second;
result[i].corr.resize(buf.size());
for (unsigned int t = 0; t < buf.size(); ++t)
result[i].corr.resize(nt);
}
if (env().template isObjectOfType<SlicedPropagator1>(par().q1) and
env().template isObjectOfType<SlicedPropagator2>(par().q2))
{
SlicedPropagator1 &q1 = *env().template getObject<SlicedPropagator1>(par().q1);
SlicedPropagator2 &q2 = *env().template getObject<SlicedPropagator2>(par().q2);
LOG(Message) << "(propagator already sinked)" << std::endl;
for (unsigned int i = 0; i < result.size(); ++i)
{
result[i].corr[t] = TensorRemove(buf[t]);
Gamma gSnk(gammaList[i].first);
Gamma gSrc(gammaList[i].second);
for (unsigned int t = 0; t < buf.size(); ++t)
{
result[i].corr[t] = TensorRemove(trace(mesonConnected(q1[t], q2[t], gSnk, gSrc)));
}
}
}
else
{
PropagatorField1 &q1 = *env().template getObject<PropagatorField1>(par().q1);
PropagatorField2 &q2 = *env().template getObject<PropagatorField2>(par().q2);
LatticeComplex c(env().getGrid());
LOG(Message) << "(using sink '" << par().sink << "')" << std::endl;
for (unsigned int i = 0; i < result.size(); ++i)
{
Gamma gSnk(gammaList[i].first);
Gamma gSrc(gammaList[i].second);
std::string ns;
ns = env().getModuleNamespace(env().getObjectModule(par().sink));
if (ns == "MSource")
{
PropagatorField1 &sink =
*env().template getObject<PropagatorField1>(par().sink);
c = trace(mesonConnected(q1, q2, gSnk, gSrc)*sink);
sliceSum(c, buf, Tp);
}
else if (ns == "MSink")
{
SinkFnScalar &sink = *env().template getObject<SinkFnScalar>(par().sink);
c = trace(mesonConnected(q1, q2, gSnk, gSrc));
buf = sink(c);
}
for (unsigned int t = 0; t < buf.size(); ++t)
{
result[i].corr[t] = TensorRemove(buf[t]);
}
}
}
write(writer, "meson", result);
@ -208,4 +241,4 @@ END_MODULE_NAMESPACE
END_HADRONS_NAMESPACE
#endif // Hadrons_Meson_hpp_
#endif // Hadrons_MContraction_Meson_hpp_

8
extras/Hadrons/Modules/MContraction/WeakHamiltonian.hpp
View File

@ -26,8 +26,8 @@ See the full license in the file "LICENSE" in the top level distribution directo
*************************************************************************************/
/* END LEGAL */
#ifndef Hadrons_WeakHamiltonian_hpp_
#define Hadrons_WeakHamiltonian_hpp_
#ifndef Hadrons_MContraction_WeakHamiltonian_hpp_
#define Hadrons_MContraction_WeakHamiltonian_hpp_
#include <Grid/Hadrons/Global.hpp>
#include <Grid/Hadrons/Module.hpp>
@ -83,7 +83,7 @@ public:
class T##modname: public Module<WeakHamiltonianPar>\
{\
public:\
TYPE_ALIASES(FIMPL,)\
FERM_TYPE_ALIASES(FIMPL,)\
class Result: Serializable\
{\
public:\
@ -111,4 +111,4 @@ END_MODULE_NAMESPACE
END_HADRONS_NAMESPACE
#endif // Hadrons_WeakHamiltonian_hpp_
#endif // Hadrons_MContraction_WeakHamiltonian_hpp_

6
extras/Hadrons/Modules/MContraction/WeakHamiltonianEye.hpp
View File

@ -26,8 +26,8 @@ See the full license in the file "LICENSE" in the top level distribution directo
*************************************************************************************/
/* END LEGAL */
#ifndef Hadrons_WeakHamiltonianEye_hpp_
#define Hadrons_WeakHamiltonianEye_hpp_
#ifndef Hadrons_MContraction_WeakHamiltonianEye_hpp_
#define Hadrons_MContraction_WeakHamiltonianEye_hpp_
#include <Grid/Hadrons/Modules/MContraction/WeakHamiltonian.hpp>
@ -55,4 +55,4 @@ END_MODULE_NAMESPACE
END_HADRONS_NAMESPACE
#endif // Hadrons_WeakHamiltonianEye_hpp_
#endif // Hadrons_MContraction_WeakHamiltonianEye_hpp_

6
extras/Hadrons/Modules/MContraction/WeakHamiltonianNonEye.hpp
View File

@ -26,8 +26,8 @@ See the full license in the file "LICENSE" in the top level distribution directo
*************************************************************************************/
/* END LEGAL */
#ifndef Hadrons_WeakHamiltonianNonEye_hpp_
#define Hadrons_WeakHamiltonianNonEye_hpp_
#ifndef Hadrons_MContraction_WeakHamiltonianNonEye_hpp_
#define Hadrons_MContraction_WeakHamiltonianNonEye_hpp_
#include <Grid/Hadrons/Modules/MContraction/WeakHamiltonian.hpp>
@ -54,4 +54,4 @@ END_MODULE_NAMESPACE
END_HADRONS_NAMESPACE
#endif // Hadrons_WeakHamiltonianNonEye_hpp_
#endif // Hadrons_MContraction_WeakHamiltonianNonEye_hpp_

6
extras/Hadrons/Modules/MContraction/WeakNeutral4ptDisc.hpp
View File

@ -26,8 +26,8 @@ See the full license in the file "LICENSE" in the top level distribution directo
*************************************************************************************/
/* END LEGAL */
#ifndef Hadrons_WeakNeutral4ptDisc_hpp_
#define Hadrons_WeakNeutral4ptDisc_hpp_
#ifndef Hadrons_MContraction_WeakNeutral4ptDisc_hpp_
#define Hadrons_MContraction_WeakNeutral4ptDisc_hpp_
#include <Grid/Hadrons/Modules/MContraction/WeakHamiltonian.hpp>
@ -56,4 +56,4 @@ END_MODULE_NAMESPACE
END_HADRONS_NAMESPACE
#endif // Hadrons_WeakNeutral4ptDisc_hpp_
#endif // Hadrons_MContraction_WeakNeutral4ptDisc_hpp_

79
extras/Hadrons/Modules/Quark.hpp → extras/Hadrons/Modules/MFermion/GaugeProp.hpp
View File

@ -1,34 +1,5 @@
/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: extras/Hadrons/Modules/Quark.hpp
Copyright (C) 2015
Copyright (C) 2016
Author: Antonin Portelli <antonin.portelli@me.com>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#ifndef Hadrons_Quark_hpp_
#define Hadrons_Quark_hpp_
#ifndef Hadrons_MFermion_GaugeProp_hpp_
#define Hadrons_MFermion_GaugeProp_hpp_
#include <Grid/Hadrons/Global.hpp>
#include <Grid/Hadrons/Module.hpp>
@ -37,27 +8,29 @@ See the full license in the file "LICENSE" in the top level distribution directo
BEGIN_HADRONS_NAMESPACE
/******************************************************************************
* TQuark *
* GaugeProp *
******************************************************************************/
class QuarkPar: Serializable
BEGIN_MODULE_NAMESPACE(MFermion)
class GaugePropPar: Serializable
{
public:
GRID_SERIALIZABLE_CLASS_MEMBERS(QuarkPar,
GRID_SERIALIZABLE_CLASS_MEMBERS(GaugePropPar,
std::string, source,
std::string, solver);
};
template <typename FImpl>
class TQuark: public Module<QuarkPar>
class TGaugeProp: public Module<GaugePropPar>
{
public:
TYPE_ALIASES(FImpl,);
FGS_TYPE_ALIASES(FImpl,);
public:
// constructor
TQuark(const std::string name);
TGaugeProp(const std::string name);
// destructor
virtual ~TQuark(void) = default;
// dependencies/products
virtual ~TGaugeProp(void) = default;
// dependency relation
virtual std::vector<std::string> getInput(void);
virtual std::vector<std::string> getOutput(void);
// setup
@ -69,20 +42,20 @@ private:
SolverFn *solver_{nullptr};
};
MODULE_REGISTER(Quark, TQuark<FIMPL>);
MODULE_REGISTER_NS(GaugeProp, TGaugeProp<FIMPL>, MFermion);
/******************************************************************************
* TQuark implementation *
* TGaugeProp implementation *
******************************************************************************/
// constructor /////////////////////////////////////////////////////////////////
template <typename FImpl>
TQuark<FImpl>::TQuark(const std::string name)
: Module(name)
TGaugeProp<FImpl>::TGaugeProp(const std::string name)
: Module<GaugePropPar>(name)
{}
// dependencies/products ///////////////////////////////////////////////////////
template <typename FImpl>
std::vector<std::string> TQuark<FImpl>::getInput(void)
std::vector<std::string> TGaugeProp<FImpl>::getInput(void)
{
std::vector<std::string> in = {par().source, par().solver};
@ -90,7 +63,7 @@ std::vector<std::string> TQuark<FImpl>::getInput(void)
}
template <typename FImpl>
std::vector<std::string> TQuark<FImpl>::getOutput(void)
std::vector<std::string> TGaugeProp<FImpl>::getOutput(void)
{
std::vector<std::string> out = {getName(), getName() + "_5d"};
@ -99,7 +72,7 @@ std::vector<std::string> TQuark<FImpl>::getOutput(void)
// setup ///////////////////////////////////////////////////////////////////////
template <typename FImpl>
void TQuark<FImpl>::setup(void)
void TGaugeProp<FImpl>::setup(void)
{
Ls_ = env().getObjectLs(par().solver);
env().template registerLattice<PropagatorField>(getName());
@ -111,13 +84,13 @@ void TQuark<FImpl>::setup(void)
// execution ///////////////////////////////////////////////////////////////////
template <typename FImpl>
void TQuark<FImpl>::execute(void)
void TGaugeProp<FImpl>::execute(void)
{
LOG(Message) << "Computing quark propagator '" << getName() << "'"
<< std::endl;
<< std::endl;
FermionField source(env().getGrid(Ls_)), sol(env().getGrid(Ls_)),
tmp(env().getGrid());
tmp(env().getGrid());
std::string propName = (Ls_ == 1) ? getName() : (getName() + "_5d");
PropagatorField &prop = *env().template createLattice<PropagatorField>(propName);
PropagatorField &fullSrc = *env().template getObject<PropagatorField>(par().source);
@ -128,7 +101,7 @@ void TQuark<FImpl>::execute(void)
}
LOG(Message) << "Inverting using solver '" << par().solver
<< "' on source '" << par().source << "'" << std::endl;
<< "' on source '" << par().source << "'" << std::endl;
for (unsigned int s = 0; s < Ns; ++s)
for (unsigned int c = 0; c < Nc; ++c)
{
@ -170,7 +143,7 @@ void TQuark<FImpl>::execute(void)
if (Ls_ > 1)
{
PropagatorField &p4d =
*env().template getObject<PropagatorField>(getName());
*env().template getObject<PropagatorField>(getName());
axpby_ssp_pminus(sol, 0., sol, 1., sol, 0, 0);
axpby_ssp_pplus(sol, 1., sol, 1., sol, 0, Ls_-1);
@ -180,6 +153,8 @@ void TQuark<FImpl>::execute(void)
}
}
END_MODULE_NAMESPACE
END_HADRONS_NAMESPACE
#endif // Hadrons_Quark_hpp_
#endif // Hadrons_MFermion_GaugeProp_hpp_

4
extras/Hadrons/Modules/MGauge/Load.cc
View File

@ -65,7 +65,7 @@ void TLoad::setup(void)
// execution ///////////////////////////////////////////////////////////////////
void TLoad::execute(void)
{
NerscField header;
FieldMetaData header;
std::string fileName = par().file + "."
+ std::to_string(env().getTrajectory());
@ -74,5 +74,5 @@ void TLoad::execute(void)
LatticeGaugeField &U = *env().createLattice<LatticeGaugeField>(getName());
NerscIO::readConfiguration(U, header, fileName);
LOG(Message) << "NERSC header:" << std::endl;
dump_nersc_header(header, LOG(Message));
dump_meta_data(header, LOG(Message));
}

6
extras/Hadrons/Modules/MGauge/Load.hpp
View File

@ -27,8 +27,8 @@ See the full license in the file "LICENSE" in the top level distribution directo
*************************************************************************************/
/* END LEGAL */
#ifndef Hadrons_Load_hpp_
#define Hadrons_Load_hpp_
#ifndef Hadrons_MGauge_Load_hpp_
#define Hadrons_MGauge_Load_hpp_
#include <Grid/Hadrons/Global.hpp>
#include <Grid/Hadrons/Module.hpp>
@ -70,4 +70,4 @@ END_MODULE_NAMESPACE
END_HADRONS_NAMESPACE
#endif // Hadrons_Load_hpp_
#endif // Hadrons_MGauge_Load_hpp_

6
extras/Hadrons/Modules/MGauge/Random.hpp
View File

@ -27,8 +27,8 @@ See the full license in the file "LICENSE" in the top level distribution directo
*************************************************************************************/
/* END LEGAL */
#ifndef Hadrons_Random_hpp_
#define Hadrons_Random_hpp_
#ifndef Hadrons_MGauge_Random_hpp_
#define Hadrons_MGauge_Random_hpp_
#include <Grid/Hadrons/Global.hpp>
#include <Grid/Hadrons/Module.hpp>
@ -63,4 +63,4 @@ END_MODULE_NAMESPACE
END_HADRONS_NAMESPACE
#endif // Hadrons_Random_hpp_
#endif // Hadrons_MGauge_Random_hpp_

88
extras/Hadrons/Modules/MGauge/StochEm.cc Normal file
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@ -0,0 +1,88 @@
/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: extras/Hadrons/Modules/MGauge/StochEm.cc
Copyright (C) 2015
Copyright (C) 2016
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#include <Grid/Hadrons/Modules/MGauge/StochEm.hpp>
using namespace Grid;
using namespace Hadrons;
using namespace MGauge;
/******************************************************************************
* TStochEm implementation *
******************************************************************************/
// constructor /////////////////////////////////////////////////////////////////
TStochEm::TStochEm(const std::string name)
: Module<StochEmPar>(name)
{}
// dependencies/products ///////////////////////////////////////////////////////
std::vector<std::string> TStochEm::getInput(void)
{
std::vector<std::string> in;
return in;
}
std::vector<std::string> TStochEm::getOutput(void)
{
std::vector<std::string> out = {getName()};
return out;
}
// setup ///////////////////////////////////////////////////////////////////////
void TStochEm::setup(void)
{
if (!env().hasRegisteredObject("_" + getName() + "_weight"))
{
env().registerLattice<EmComp>("_" + getName() + "_weight");
}
env().registerLattice<EmField>(getName());
}
// execution ///////////////////////////////////////////////////////////////////
void TStochEm::execute(void)
{
PhotonR photon(par().gauge, par().zmScheme);
EmField &a = *env().createLattice<EmField>(getName());
EmComp *w;
if (!env().hasCreatedObject("_" + getName() + "_weight"))
{
LOG(Message) << "Caching stochatic EM potential weight (gauge: "
<< par().gauge << ", zero-mode scheme: "
<< par().zmScheme << ")..." << std::endl;
w = env().createLattice<EmComp>("_" + getName() + "_weight");
photon.StochasticWeight(*w);
}
else
{
w = env().getObject<EmComp>("_" + getName() + "_weight");
}
LOG(Message) << "Generating stochatic EM potential..." << std::endl;
photon.StochasticField(a, *env().get4dRng(), *w);
}

75
extras/Hadrons/Modules/MGauge/StochEm.hpp Normal file
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@ -0,0 +1,75 @@
/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: extras/Hadrons/Modules/MGauge/StochEm.hpp
Copyright (C) 2015
Copyright (C) 2016
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#ifndef Hadrons_MGauge_StochEm_hpp_
#define Hadrons_MGauge_StochEm_hpp_
#include <Grid/Hadrons/Global.hpp>
#include <Grid/Hadrons/Module.hpp>
#include <Grid/Hadrons/ModuleFactory.hpp>
BEGIN_HADRONS_NAMESPACE
/******************************************************************************
* StochEm *
******************************************************************************/
BEGIN_MODULE_NAMESPACE(MGauge)
class StochEmPar: Serializable
{
public:
GRID_SERIALIZABLE_CLASS_MEMBERS(StochEmPar,
PhotonR::Gauge, gauge,
PhotonR::ZmScheme, zmScheme);
};
class TStochEm: public Module<StochEmPar>
{
public:
typedef PhotonR::GaugeField EmField;
typedef PhotonR::GaugeLinkField EmComp;
public:
// constructor
TStochEm(const std::string name);
// destructor
virtual ~TStochEm(void) = default;
// dependency relation
virtual std::vector<std::string> getInput(void);
virtual std::vector<std::string> getOutput(void);
// setup
virtual void setup(void);
// execution
virtual void execute(void);
};
MODULE_REGISTER_NS(StochEm, TStochEm, MGauge);
END_MODULE_NAMESPACE
END_HADRONS_NAMESPACE
#endif // Hadrons_MGauge_StochEm_hpp_

6
extras/Hadrons/Modules/MGauge/Unit.hpp
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@ -27,8 +27,8 @@ See the full license in the file "LICENSE" in the top level distribution directo
*************************************************************************************/
/* END LEGAL */
#ifndef Hadrons_Unit_hpp_
#define Hadrons_Unit_hpp_
#ifndef Hadrons_MGauge_Unit_hpp_
#define Hadrons_MGauge_Unit_hpp_
#include <Grid/Hadrons/Global.hpp>
#include <Grid/Hadrons/Module.hpp>
@ -63,4 +63,4 @@ END_MODULE_NAMESPACE
END_HADRONS_NAMESPACE
#endif // Hadrons_Unit_hpp_
#endif // Hadrons_MGauge_Unit_hpp_

8
extras/Hadrons/Modules/MLoop/NoiseLoop.hpp
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@ -26,8 +26,8 @@ See the full license in the file "LICENSE" in the top level distribution directo
*************************************************************************************/
/* END LEGAL */
#ifndef Hadrons_NoiseLoop_hpp_
#define Hadrons_NoiseLoop_hpp_
#ifndef Hadrons_MLoop_NoiseLoop_hpp_
#define Hadrons_MLoop_NoiseLoop_hpp_
#include <Grid/Hadrons/Global.hpp>
#include <Grid/Hadrons/Module.hpp>
@ -65,7 +65,7 @@ template <typename FImpl>
class TNoiseLoop: public Module<NoiseLoopPar>
{
public:
TYPE_ALIASES(FImpl,);
FERM_TYPE_ALIASES(FImpl,);
public:
// constructor
TNoiseLoop(const std::string name);
@ -129,4 +129,4 @@ END_MODULE_NAMESPACE
END_HADRONS_NAMESPACE
#endif // Hadrons_NoiseLoop_hpp_
#endif // Hadrons_MLoop_NoiseLoop_hpp_

226
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@ -0,0 +1,226 @@
#include <Grid/Hadrons/Modules/MScalar/ChargedProp.hpp>
#include <Grid/Hadrons/Modules/MScalar/Scalar.hpp>
using namespace Grid;
using namespace Hadrons;
using namespace MScalar;
/******************************************************************************
* TChargedProp implementation *
******************************************************************************/
// constructor /////////////////////////////////////////////////////////////////
TChargedProp::TChargedProp(const std::string name)
: Module<ChargedPropPar>(name)
{}
// dependencies/products ///////////////////////////////////////////////////////
std::vector<std::string> TChargedProp::getInput(void)
{
std::vector<std::string> in = {par().source, par().emField};
return in;
}
std::vector<std::string> TChargedProp::getOutput(void)
{
std::vector<std::string> out = {getName()};
return out;
}
// setup ///////////////////////////////////////////////////////////////////////
void TChargedProp::setup(void)
{
freeMomPropName_ = FREEMOMPROP(par().mass);
phaseName_.clear();
for (unsigned int mu = 0; mu < env().getNd(); ++mu)
{
phaseName_.push_back("_shiftphase_" + std::to_string(mu));
}
GFSrcName_ = "_" + getName() + "_DinvSrc";
if (!env().hasRegisteredObject(freeMomPropName_))
{
env().registerLattice<ScalarField>(freeMomPropName_);
}
if (!env().hasRegisteredObject(phaseName_[0]))
{
for (unsigned int mu = 0; mu < env().getNd(); ++mu)
{
env().registerLattice<ScalarField>(phaseName_[mu]);
}
}
if (!env().hasRegisteredObject(GFSrcName_))
{
env().registerLattice<ScalarField>(GFSrcName_);
}
env().registerLattice<ScalarField>(getName());
}
// execution ///////////////////////////////////////////////////////////////////
void TChargedProp::execute(void)
{
// CACHING ANALYTIC EXPRESSIONS
ScalarField &source = *env().getObject<ScalarField>(par().source);
Complex ci(0.0,1.0);
FFT fft(env().getGrid());
// cache free scalar propagator
if (!env().hasCreatedObject(freeMomPropName_))
{
LOG(Message) << "Caching momentum space free scalar propagator"
<< " (mass= " << par().mass << ")..." << std::endl;
freeMomProp_ = env().createLattice<ScalarField>(freeMomPropName_);
SIMPL::MomentumSpacePropagator(*freeMomProp_, par().mass);
}
else
{
freeMomProp_ = env().getObject<ScalarField>(freeMomPropName_);
}
// cache G*F*src
if (!env().hasCreatedObject(GFSrcName_))
{
GFSrc_ = env().createLattice<ScalarField>(GFSrcName_);
fft.FFT_all_dim(*GFSrc_, source, FFT::forward);
*GFSrc_ = (*freeMomProp_)*(*GFSrc_);
}
else
{
GFSrc_ = env().getObject<ScalarField>(GFSrcName_);
}
// cache phases
if (!env().hasCreatedObject(phaseName_[0]))
{
std::vector<int> &l = env().getGrid()->_fdimensions;
LOG(Message) << "Caching shift phases..." << std::endl;
for (unsigned int mu = 0; mu < env().getNd(); ++mu)
{
Real twoPiL = M_PI*2./l[mu];
phase_.push_back(env().createLattice<ScalarField>(phaseName_[mu]));
LatticeCoordinate(*(phase_[mu]), mu);
*(phase_[mu]) = exp(ci*twoPiL*(*(phase_[mu])));
}
}
else
{
for (unsigned int mu = 0; mu < env().getNd(); ++mu)
{
phase_.push_back(env().getObject<ScalarField>(phaseName_[mu]));
}
}
// PROPAGATOR CALCULATION
LOG(Message) << "Computing charged scalar propagator"
<< " (mass= " << par().mass
<< ", charge= " << par().charge << ")..." << std::endl;
ScalarField &prop = *env().createLattice<ScalarField>(getName());
ScalarField buf(env().getGrid());
ScalarField &GFSrc = *GFSrc_, &G = *freeMomProp_;
double q = par().charge;
// G*F*Src
prop = GFSrc;
// - q*G*momD1*G*F*Src (momD1 = F*D1*Finv)
buf = GFSrc;
momD1(buf, fft);
buf = G*buf;
prop = prop - q*buf;
// + q^2*G*momD1*G*momD1*G*F*Src (here buf = G*momD1*G*F*Src)
momD1(buf, fft);
prop = prop + q*q*G*buf;
// - q^2*G*momD2*G*F*Src (momD2 = F*D2*Finv)
buf = GFSrc;
momD2(buf, fft);
prop = prop - q*q*G*buf;
// final FT
fft.FFT_all_dim(prop, prop, FFT::backward);
// OUTPUT IF NECESSARY
if (!par().output.empty())
{
std::string filename = par().output + "." +
std::to_string(env().getTrajectory());
LOG(Message) << "Saving zero-momentum projection to '"
<< filename << "'..." << std::endl;
CorrWriter writer(filename);
std::vector<TComplex> vecBuf;
std::vector<Complex> result;
sliceSum(prop, vecBuf, Tp);
result.resize(vecBuf.size());
for (unsigned int t = 0; t < vecBuf.size(); ++t)
{
result[t] = TensorRemove(vecBuf[t]);
}
write(writer, "charge", q);
write(writer, "prop", result);
}
}
void TChargedProp::momD1(ScalarField &s, FFT &fft)
{
EmField &A = *env().getObject<EmField>(par().emField);
ScalarField buf(env().getGrid()), result(env().getGrid()),
Amu(env().getGrid());
Complex ci(0.0,1.0);
result = zero;
for (unsigned int mu = 0; mu < env().getNd(); ++mu)
{
Amu = peekLorentz(A, mu);
buf = (*phase_[mu])*s;
fft.FFT_all_dim(buf, buf, FFT::backward);
buf = Amu*buf;
fft.FFT_all_dim(buf, buf, FFT::forward);
result = result - ci*buf;
}
fft.FFT_all_dim(s, s, FFT::backward);
for (unsigned int mu = 0; mu < env().getNd(); ++mu)
{
Amu = peekLorentz(A, mu);
buf = Amu*s;
fft.FFT_all_dim(buf, buf, FFT::forward);
result = result + ci*adj(*phase_[mu])*buf;
}
s = result;
}
void TChargedProp::momD2(ScalarField &s, FFT &fft)
{
EmField &A = *env().getObject<EmField>(par().emField);
ScalarField buf(env().getGrid()), result(env().getGrid()),
Amu(env().getGrid());
result = zero;
for (unsigned int mu = 0; mu < env().getNd(); ++mu)
{
Amu = peekLorentz(A, mu);
buf = (*phase_[mu])*s;
fft.FFT_all_dim(buf, buf, FFT::backward);
buf = Amu*Amu*buf;
fft.FFT_all_dim(buf, buf, FFT::forward);
result = result + .5*buf;
}
fft.FFT_all_dim(s, s, FFT::backward);
for (unsigned int mu = 0; mu < env().getNd(); ++mu)
{
Amu = peekLorentz(A, mu);
buf = Amu*Amu*s;
fft.FFT_all_dim(buf, buf, FFT::forward);
result = result + .5*adj(*phase_[mu])*buf;
}
s = result;
}

61
extras/Hadrons/Modules/MScalar/ChargedProp.hpp Normal file
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@ -0,0 +1,61 @@
#ifndef Hadrons_MScalar_ChargedProp_hpp_
#define Hadrons_MScalar_ChargedProp_hpp_
#include <Grid/Hadrons/Global.hpp>
#include <Grid/Hadrons/Module.hpp>
#include <Grid/Hadrons/ModuleFactory.hpp>
BEGIN_HADRONS_NAMESPACE
/******************************************************************************
* Charged scalar propagator *
******************************************************************************/
BEGIN_MODULE_NAMESPACE(MScalar)
class ChargedPropPar: Serializable
{
public:
GRID_SERIALIZABLE_CLASS_MEMBERS(ChargedPropPar,
std::string, emField,
std::string, source,
double, mass,
double, charge,
std::string, output);
};
class TChargedProp: public Module<ChargedPropPar>
{
public:
SCALAR_TYPE_ALIASES(SIMPL,);
typedef PhotonR::GaugeField EmField;
typedef PhotonR::GaugeLinkField EmComp;
public:
// constructor
TChargedProp(const std::string name);
// destructor
virtual ~TChargedProp(void) = default;
// dependency relation
virtual std::vector<std::string> getInput(void);
virtual std::vector<std::string> getOutput(void);
// setup
virtual void setup(void);
// execution
virtual void execute(void);
private:
void momD1(ScalarField &s, FFT &fft);
void momD2(ScalarField &s, FFT &fft);
private:
std::string freeMomPropName_, GFSrcName_;
std::vector<std::string> phaseName_;
ScalarField *freeMomProp_, *GFSrc_;
std::vector<ScalarField *> phase_;
EmField *A;
};
MODULE_REGISTER_NS(ChargedProp, TChargedProp, MScalar);
END_MODULE_NAMESPACE
END_HADRONS_NAMESPACE
#endif // Hadrons_MScalar_ChargedProp_hpp_

79
extras/Hadrons/Modules/MScalar/FreeProp.cc Normal file
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@ -0,0 +1,79 @@
#include <Grid/Hadrons/Modules/MScalar/FreeProp.hpp>
#include <Grid/Hadrons/Modules/MScalar/Scalar.hpp>
using namespace Grid;
using namespace Hadrons;
using namespace MScalar;
/******************************************************************************
* TFreeProp implementation *
******************************************************************************/
// constructor /////////////////////////////////////////////////////////////////
TFreeProp::TFreeProp(const std::string name)
: Module<FreePropPar>(name)
{}
// dependencies/products ///////////////////////////////////////////////////////
std::vector<std::string> TFreeProp::getInput(void)
{
std::vector<std::string> in = {par().source};
return in;
}
std::vector<std::string> TFreeProp::getOutput(void)
{
std::vector<std::string> out = {getName()};
return out;
}
// setup ///////////////////////////////////////////////////////////////////////
void TFreeProp::setup(void)
{
freeMomPropName_ = FREEMOMPROP(par().mass);
if (!env().hasRegisteredObject(freeMomPropName_))
{
env().registerLattice<ScalarField>(freeMomPropName_);
}
env().registerLattice<ScalarField>(getName());
}
// execution ///////////////////////////////////////////////////////////////////
void TFreeProp::execute(void)
{
ScalarField &prop = *env().createLattice<ScalarField>(getName());
ScalarField &source = *env().getObject<ScalarField>(par().source);
ScalarField *freeMomProp;
if (!env().hasCreatedObject(freeMomPropName_))
{
LOG(Message) << "Caching momentum space free scalar propagator"
<< " (mass= " << par().mass << ")..." << std::endl;
freeMomProp = env().createLattice<ScalarField>(freeMomPropName_);
SIMPL::MomentumSpacePropagator(*freeMomProp, par().mass);
}
else
{
freeMomProp = env().getObject<ScalarField>(freeMomPropName_);
}
LOG(Message) << "Computing free scalar propagator..." << std::endl;
SIMPL::FreePropagator(source, prop, *freeMomProp);
if (!par().output.empty())
{
TextWriter writer(par().output + "." +
std::to_string(env().getTrajectory()));
std::vector<TComplex> buf;
std::vector<Complex> result;
sliceSum(prop, buf, Tp);
result.resize(buf.size());
for (unsigned int t = 0; t < buf.size(); ++t)
{
result[t] = TensorRemove(buf[t]);
}
write(writer, "prop", result);
}
}

50
extras/Hadrons/Modules/MScalar/FreeProp.hpp Normal file
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@ -0,0 +1,50 @@
#ifndef Hadrons_MScalar_FreeProp_hpp_
#define Hadrons_MScalar_FreeProp_hpp_
#include <Grid/Hadrons/Global.hpp>
#include <Grid/Hadrons/Module.hpp>
#include <Grid/Hadrons/ModuleFactory.hpp>
BEGIN_HADRONS_NAMESPACE
/******************************************************************************
* FreeProp *
******************************************************************************/
BEGIN_MODULE_NAMESPACE(MScalar)
class FreePropPar: Serializable
{
public:
GRID_SERIALIZABLE_CLASS_MEMBERS(FreePropPar,
std::string, source,
double, mass,
std::string, output);
};
class TFreeProp: public Module<FreePropPar>
{
public:
SCALAR_TYPE_ALIASES(SIMPL,);
public:
// constructor
TFreeProp(const std::string name);
// destructor
virtual ~TFreeProp(void) = default;
// dependency relation
virtual std::vector<std::string> getInput(void);
virtual std::vector<std::string> getOutput(void);
// setup
virtual void setup(void);
// execution
virtual void execute(void);
private:
std::string freeMomPropName_;
};
MODULE_REGISTER_NS(FreeProp, TFreeProp, MScalar);
END_MODULE_NAMESPACE
END_HADRONS_NAMESPACE
#endif // Hadrons_MScalar_FreeProp_hpp_

6
extras/Hadrons/Modules/MScalar/Scalar.hpp Normal file
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@ -0,0 +1,6 @@
#ifndef Hadrons_Scalar_hpp_
#define Hadrons_Scalar_hpp_
#define FREEMOMPROP(m) "_scalar_mom_prop_" + std::to_string(m)
#endif // Hadrons_Scalar_hpp_

114
extras/Hadrons/Modules/MSink/Point.hpp Normal file
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@ -0,0 +1,114 @@
#ifndef Hadrons_MSink_Point_hpp_
#define Hadrons_MSink_Point_hpp_
#include <Grid/Hadrons/Global.hpp>
#include <Grid/Hadrons/Module.hpp>
#include <Grid/Hadrons/ModuleFactory.hpp>
BEGIN_HADRONS_NAMESPACE
/******************************************************************************
* Point *
******************************************************************************/
BEGIN_MODULE_NAMESPACE(MSink)
class PointPar: Serializable
{
public:
GRID_SERIALIZABLE_CLASS_MEMBERS(PointPar,
std::string, mom);
};
template <typename FImpl>
class TPoint: public Module<PointPar>
{
public:
FERM_TYPE_ALIASES(FImpl,);
SINK_TYPE_ALIASES();
public:
// constructor
TPoint(const std::string name);
// destructor
virtual ~TPoint(void) = default;
// dependency relation
virtual std::vector<std::string> getInput(void);
virtual std::vector<std::string> getOutput(void);
// setup
virtual void setup(void);
// execution
virtual void execute(void);
};
MODULE_REGISTER_NS(Point, TPoint<FIMPL>, MSink);
MODULE_REGISTER_NS(ScalarPoint, TPoint<ScalarImplCR>, MSink);
/******************************************************************************
* TPoint implementation *
******************************************************************************/
// constructor /////////////////////////////////////////////////////////////////
template <typename FImpl>
TPoint<FImpl>::TPoint(const std::string name)
: Module<PointPar>(name)
{}
// dependencies/products ///////////////////////////////////////////////////////
template <typename FImpl>
std::vector<std::string> TPoint<FImpl>::getInput(void)
{
std::vector<std::string> in;
return in;
}
template <typename FImpl>
std::vector<std::string> TPoint<FImpl>::getOutput(void)
{
std::vector<std::string> out = {getName()};
return out;
}
// setup ///////////////////////////////////////////////////////////////////////
template <typename FImpl>
void TPoint<FImpl>::setup(void)
{
unsigned int size;
size = env().template lattice4dSize<LatticeComplex>();
env().registerObject(getName(), size);
}
// execution ///////////////////////////////////////////////////////////////////
template <typename FImpl>
void TPoint<FImpl>::execute(void)
{
std::vector<Real> p = strToVec<Real>(par().mom);
LatticeComplex ph(env().getGrid()), coor(env().getGrid());
Complex i(0.0,1.0);
LOG(Message) << "Setting up point sink function for momentum ["
<< par().mom << "]" << std::endl;
ph = zero;
for(unsigned int mu = 0; mu < env().getNd(); mu++)
{
LatticeCoordinate(coor, mu);
ph = ph + (p[mu]/env().getGrid()->_fdimensions[mu])*coor;
}
ph = exp((Real)(2*M_PI)*i*ph);
auto sink = [ph](const PropagatorField &field)
{
SlicedPropagator res;
PropagatorField tmp = ph*field;
sliceSum(tmp, res, Tp);
return res;
};
env().setObject(getName(), new SinkFn(sink));
}
END_MODULE_NAMESPACE
END_HADRONS_NAMESPACE
#endif // Hadrons_MSink_Point_hpp_

8
extras/Hadrons/Modules/MSolver/RBPrecCG.hpp
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@ -27,8 +27,8 @@ See the full license in the file "LICENSE" in the top level distribution directo
*************************************************************************************/
/* END LEGAL */
#ifndef Hadrons_RBPrecCG_hpp_
#define Hadrons_RBPrecCG_hpp_
#ifndef Hadrons_MSolver_RBPrecCG_hpp_
#define Hadrons_MSolver_RBPrecCG_hpp_
#include <Grid/Hadrons/Global.hpp>
#include <Grid/Hadrons/Module.hpp>
@ -53,7 +53,7 @@ template <typename FImpl>
class TRBPrecCG: public Module<RBPrecCGPar>
{
public:
TYPE_ALIASES(FImpl,);
FGS_TYPE_ALIASES(FImpl,);
public:
// constructor
TRBPrecCG(const std::string name);
@ -129,4 +129,4 @@ END_MODULE_NAMESPACE
END_HADRONS_NAMESPACE
#endif // Hadrons_RBPrecCG_hpp_
#endif // Hadrons_MSolver_RBPrecCG_hpp_

11
extras/Hadrons/Modules/MSource/Point.hpp
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@ -27,8 +27,8 @@ See the full license in the file "LICENSE" in the top level distribution directo
*************************************************************************************/
/* END LEGAL */
#ifndef Hadrons_Point_hpp_
#define Hadrons_Point_hpp_
#ifndef Hadrons_MSource_Point_hpp_
#define Hadrons_MSource_Point_hpp_
#include <Grid/Hadrons/Global.hpp>
#include <Grid/Hadrons/Module.hpp>
@ -63,7 +63,7 @@ template <typename FImpl>
class TPoint: public Module<PointPar>
{
public:
TYPE_ALIASES(FImpl,);
FERM_TYPE_ALIASES(FImpl,);
public:
// constructor
TPoint(const std::string name);
@ -78,7 +78,8 @@ public:
virtual void execute(void);
};
MODULE_REGISTER_NS(Point, TPoint<FIMPL>, MSource);
MODULE_REGISTER_NS(Point, TPoint<FIMPL>, MSource);
MODULE_REGISTER_NS(ScalarPoint, TPoint<ScalarImplCR>, MSource);
/******************************************************************************
* TPoint template implementation *
@ -132,4 +133,4 @@ END_MODULE_NAMESPACE
END_HADRONS_NAMESPACE
#endif // Hadrons_Point_hpp_
#endif // Hadrons_MSource_Point_hpp_

8
extras/Hadrons/Modules/MSource/SeqGamma.hpp
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@ -28,8 +28,8 @@ See the full license in the file "LICENSE" in the top level distribution directo
*************************************************************************************/
/* END LEGAL */
#ifndef Hadrons_SeqGamma_hpp_
#define Hadrons_SeqGamma_hpp_
#ifndef Hadrons_MSource_SeqGamma_hpp_
#define Hadrons_MSource_SeqGamma_hpp_
#include <Grid/Hadrons/Global.hpp>
#include <Grid/Hadrons/Module.hpp>
@ -72,7 +72,7 @@ template <typename FImpl>
class TSeqGamma: public Module<SeqGammaPar>
{
public:
TYPE_ALIASES(FImpl,);
FGS_TYPE_ALIASES(FImpl,);
public:
// constructor
TSeqGamma(const std::string name);
@ -161,4 +161,4 @@ END_MODULE_NAMESPACE
END_HADRONS_NAMESPACE
#endif // Hadrons_SeqGamma_hpp_
#endif // Hadrons_MSource_SeqGamma_hpp_

8
extras/Hadrons/Modules/MSource/Wall.hpp
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@ -26,8 +26,8 @@ See the full license in the file "LICENSE" in the top level distribution directo
*************************************************************************************/
/* END LEGAL */
#ifndef Hadrons_WallSource_hpp_
#define Hadrons_WallSource_hpp_
#ifndef Hadrons_MSource_WallSource_hpp_
#define Hadrons_MSource_WallSource_hpp_
#include <Grid/Hadrons/Global.hpp>
#include <Grid/Hadrons/Module.hpp>
@ -64,7 +64,7 @@ template <typename FImpl>
class TWall: public Module<WallPar>
{
public:
TYPE_ALIASES(FImpl,);
FERM_TYPE_ALIASES(FImpl,);
public:
// constructor
TWall(const std::string name);
@ -144,4 +144,4 @@ END_MODULE_NAMESPACE
END_HADRONS_NAMESPACE
#endif // Hadrons_WallSource_hpp_
#endif // Hadrons_MSource_WallSource_hpp_

11
extras/Hadrons/Modules/MSource/Z2.hpp
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@ -27,8 +27,8 @@ See the full license in the file "LICENSE" in the top level distribution directo
*************************************************************************************/
/* END LEGAL */
#ifndef Hadrons_Z2_hpp_
#define Hadrons_Z2_hpp_
#ifndef Hadrons_MSource_Z2_hpp_
#define Hadrons_MSource_Z2_hpp_
#include <Grid/Hadrons/Global.hpp>
#include <Grid/Hadrons/Module.hpp>
@ -67,7 +67,7 @@ template <typename FImpl>
class TZ2: public Module<Z2Par>
{
public:
TYPE_ALIASES(FImpl,);
FERM_TYPE_ALIASES(FImpl,);
public:
// constructor
TZ2(const std::string name);
@ -82,7 +82,8 @@ public:
virtual void execute(void);
};
MODULE_REGISTER_NS(Z2, TZ2<FIMPL>, MSource);
MODULE_REGISTER_NS(Z2, TZ2<FIMPL>, MSource);
MODULE_REGISTER_NS(ScalarZ2, TZ2<ScalarImplCR>, MSource);
/******************************************************************************
* TZ2 template implementation *
@ -148,4 +149,4 @@ END_MODULE_NAMESPACE
END_HADRONS_NAMESPACE
#endif // Hadrons_Z2_hpp_
#endif // Hadrons_MSource_Z2_hpp_

6
extras/Hadrons/Modules/templates/Module_in_NS.hpp.template
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@ -1,5 +1,5 @@
#ifndef Hadrons____FILEBASENAME____hpp_
#define Hadrons____FILEBASENAME____hpp_
#ifndef Hadrons____NAMESPACE_______FILEBASENAME____hpp_
#define Hadrons____NAMESPACE_______FILEBASENAME____hpp_
#include <Grid/Hadrons/Global.hpp>
#include <Grid/Hadrons/Module.hpp>
@ -41,4 +41,4 @@ END_MODULE_NAMESPACE
END_HADRONS_NAMESPACE
#endif // Hadrons____FILEBASENAME____hpp_
#endif // Hadrons____NAMESPACE_______FILEBASENAME____hpp_

6
extras/Hadrons/Modules/templates/Module_tmp_in_NS.hpp.template
View File

@ -1,5 +1,5 @@
#ifndef Hadrons____FILEBASENAME____hpp_
#define Hadrons____FILEBASENAME____hpp_
#ifndef Hadrons____NAMESPACE_______FILEBASENAME____hpp_
#define Hadrons____NAMESPACE_______FILEBASENAME____hpp_
#include <Grid/Hadrons/Global.hpp>
#include <Grid/Hadrons/Module.hpp>
@ -82,4 +82,4 @@ END_MODULE_NAMESPACE
END_HADRONS_NAMESPACE
#endif // Hadrons____FILEBASENAME____hpp_
#endif // Hadrons____NAMESPACE_______FILEBASENAME____hpp_

14
extras/Hadrons/modules.inc
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@ -4,7 +4,10 @@ modules_cc =\
Modules/MContraction/WeakNeutral4ptDisc.cc \
Modules/MGauge/Load.cc \
Modules/MGauge/Random.cc \
Modules/MGauge/Unit.cc
Modules/MGauge/StochEm.cc \
Modules/MGauge/Unit.cc \
Modules/MScalar/ChargedProp.cc \
Modules/MScalar/FreeProp.cc
modules_hpp =\
Modules/MAction/DWF.hpp \
@ -17,14 +20,19 @@ modules_hpp =\
Modules/MContraction/WeakHamiltonianEye.hpp \
Modules/MContraction/WeakHamiltonianNonEye.hpp \
Modules/MContraction/WeakNeutral4ptDisc.hpp \
Modules/MFermion/GaugeProp.hpp \
Modules/MGauge/Load.hpp \
Modules/MGauge/Random.hpp \
Modules/MGauge/StochEm.hpp \
Modules/MGauge/Unit.hpp \
Modules/MLoop/NoiseLoop.hpp \
Modules/MScalar/ChargedProp.hpp \
Modules/MScalar/FreeProp.hpp \
Modules/MScalar/Scalar.hpp \
Modules/MSink/Point.hpp \
Modules/MSolver/RBPrecCG.hpp \
Modules/MSource/Point.hpp \
Modules/MSource/SeqGamma.hpp \
Modules/MSource/Wall.hpp \
Modules/MSource/Z2.hpp \
Modules/Quark.hpp
Modules/MSource/Z2.hpp

11
extras/qed-fvol/Global.cc Normal file
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@ -0,0 +1,11 @@
#include <qed-fvol/Global.hpp>
using namespace Grid;
using namespace QCD;
using namespace QedFVol;
QedFVolLogger QedFVol::QedFVolLogError(1,"Error");
QedFVolLogger QedFVol::QedFVolLogWarning(1,"Warning");
QedFVolLogger QedFVol::QedFVolLogMessage(1,"Message");
QedFVolLogger QedFVol::QedFVolLogIterative(1,"Iterative");
QedFVolLogger QedFVol::QedFVolLogDebug(1,"Debug");

42
extras/qed-fvol/Global.hpp Normal file
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@ -0,0 +1,42 @@
#ifndef QedFVol_Global_hpp_
#define QedFVol_Global_hpp_
#include <Grid/Grid.h>
#define BEGIN_QEDFVOL_NAMESPACE \
namespace Grid {\
using namespace QCD;\
namespace QedFVol {\
using Grid::operator<<;
#define END_QEDFVOL_NAMESPACE }}
/* the 'using Grid::operator<<;' statement prevents a very nasty compilation
* error with GCC (clang compiles fine without it).
*/
BEGIN_QEDFVOL_NAMESPACE
class QedFVolLogger: public Logger
{
public:
QedFVolLogger(int on, std::string nm): Logger("QedFVol", on, nm,
GridLogColours, "BLACK"){};
};
#define LOG(channel) std::cout << QedFVolLog##channel
#define QEDFVOL_ERROR(msg)\
LOG(Error) << msg << " (" << __FUNCTION__ << " at " << __FILE__ << ":"\
<< __LINE__ << ")" << std::endl;\
abort();
#define DEBUG_VAR(var) LOG(Debug) << #var << "= " << (var) << std::endl;
extern QedFVolLogger QedFVolLogError;
extern QedFVolLogger QedFVolLogWarning;
extern QedFVolLogger QedFVolLogMessage;
extern QedFVolLogger QedFVolLogIterative;
extern QedFVolLogger QedFVolLogDebug;
END_QEDFVOL_NAMESPACE
#endif // QedFVol_Global_hpp_

9
extras/qed-fvol/Makefile.am Normal file
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@ -0,0 +1,9 @@
AM_CXXFLAGS += -I$(top_srcdir)/extras
bin_PROGRAMS = qed-fvol
qed_fvol_SOURCES = \
qed-fvol.cc \
Global.cc
qed_fvol_LDADD = -lGrid

265
extras/qed-fvol/WilsonLoops.h Normal file
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@ -0,0 +1,265 @@
#ifndef QEDFVOL_WILSONLOOPS_H
#define QEDFVOL_WILSONLOOPS_H
#include <Global.hpp>
BEGIN_QEDFVOL_NAMESPACE
template <class Gimpl> class NewWilsonLoops : public Gimpl {
public:
INHERIT_GIMPL_TYPES(Gimpl);
typedef typename Gimpl::GaugeLinkField GaugeMat;
typedef typename Gimpl::GaugeField GaugeLorentz;
//////////////////////////////////////////////////
// directed plaquette oriented in mu,nu plane
//////////////////////////////////////////////////
static void dirPlaquette(GaugeMat &plaq, const std::vector<GaugeMat> &U,
const int mu, const int nu) {
// Annoyingly, must use either scope resolution to find dependent base
// class,
// or this-> ; there is no "this" in a static method. This forces explicit
// Gimpl scope
// resolution throughout the usage in this file, and rather defeats the
// purpose of deriving
// from Gimpl.
plaq = Gimpl::CovShiftBackward(
U[mu], mu, Gimpl::CovShiftBackward(
U[nu], nu, Gimpl::CovShiftForward(U[mu], mu, U[nu])));
}
//////////////////////////////////////////////////
// trace of directed plaquette oriented in mu,nu plane
//////////////////////////////////////////////////
static void traceDirPlaquette(LatticeComplex &plaq,
const std::vector<GaugeMat> &U, const int mu,
const int nu) {
GaugeMat sp(U[0]._grid);
dirPlaquette(sp, U, mu, nu);
plaq = trace(sp);
}
//////////////////////////////////////////////////
// sum over all planes of plaquette
//////////////////////////////////////////////////
static void sitePlaquette(LatticeComplex &Plaq,
const std::vector<GaugeMat> &U) {
LatticeComplex sitePlaq(U[0]._grid);
Plaq = zero;
for (int mu = 1; mu < U[0]._grid->_ndimension; mu++) {
for (int nu = 0; nu < mu; nu++) {
traceDirPlaquette(sitePlaq, U, mu, nu);
Plaq = Plaq + sitePlaq;
}
}
}
//////////////////////////////////////////////////
// sum over all x,y,z,t and over all planes of plaquette
//////////////////////////////////////////////////
static Real sumPlaquette(const GaugeLorentz &Umu) {
std::vector<GaugeMat> U(4, Umu._grid);
for (int mu = 0; mu < Umu._grid->_ndimension; mu++) {
U[mu] = PeekIndex<LorentzIndex>(Umu, mu);
}
LatticeComplex Plaq(Umu._grid);
sitePlaquette(Plaq, U);
TComplex Tp = sum(Plaq);
Complex p = TensorRemove(Tp);
return p.real();
}
//////////////////////////////////////////////////
// average over all x,y,z,t and over all planes of plaquette
//////////////////////////////////////////////////
static Real avgPlaquette(const GaugeLorentz &Umu) {
int ndim = Umu._grid->_ndimension;
Real sumplaq = sumPlaquette(Umu);
Real vol = Umu._grid->gSites();
Real faces = (1.0 * ndim * (ndim - 1)) / 2.0;
return sumplaq / vol / faces / Nc; // Nc dependent... FIXME
}
//////////////////////////////////////////////////
// Wilson loop of size (R1, R2), oriented in mu,nu plane
//////////////////////////////////////////////////
static void wilsonLoop(GaugeMat &wl, const std::vector<GaugeMat> &U,
const int Rmu, const int Rnu,
const int mu, const int nu) {
wl = U[nu];
for(int i = 0; i < Rnu-1; i++){
wl = Gimpl::CovShiftForward(U[nu], nu, wl);
}
for(int i = 0; i < Rmu; i++){
wl = Gimpl::CovShiftForward(U[mu], mu, wl);
}
for(int i = 0; i < Rnu; i++){
wl = Gimpl::CovShiftBackward(U[nu], nu, wl);
}
for(int i = 0; i < Rmu; i++){
wl = Gimpl::CovShiftBackward(U[mu], mu, wl);
}
}
//////////////////////////////////////////////////
// trace of Wilson Loop oriented in mu,nu plane
//////////////////////////////////////////////////
static void traceWilsonLoop(LatticeComplex &wl,
const std::vector<GaugeMat> &U,
const int Rmu, const int Rnu,
const int mu, const int nu) {
GaugeMat sp(U[0]._grid);
wilsonLoop(sp, U, Rmu, Rnu, mu, nu);
wl = trace(sp);
}
//////////////////////////////////////////////////
// sum over all planes of Wilson loop
//////////////////////////////////////////////////
static void siteWilsonLoop(LatticeComplex &Wl,
const std::vector<GaugeMat> &U,
const int R1, const int R2) {
LatticeComplex siteWl(U[0]._grid);
Wl = zero;
for (int mu = 1; mu < U[0]._grid->_ndimension; mu++) {
for (int nu = 0; nu < mu; nu++) {
traceWilsonLoop(siteWl, U, R1, R2, mu, nu);
Wl = Wl + siteWl;
traceWilsonLoop(siteWl, U, R2, R1, mu, nu);
Wl = Wl + siteWl;
}
}
}
//////////////////////////////////////////////////
// sum over planes of Wilson loop with length R1
// in the time direction
//////////////////////////////////////////////////
static void siteTimelikeWilsonLoop(LatticeComplex &Wl,
const std::vector<GaugeMat> &U,
const int R1, const int R2) {
LatticeComplex siteWl(U[0]._grid);
int ndim = U[0]._grid->_ndimension;
Wl = zero;
for (int nu = 0; nu < ndim - 1; nu++) {
traceWilsonLoop(siteWl, U, R1, R2, ndim-1, nu);
Wl = Wl + siteWl;
}
}
//////////////////////////////////////////////////
// sum Wilson loop over all planes orthogonal to the time direction
//////////////////////////////////////////////////
static void siteSpatialWilsonLoop(LatticeComplex &Wl,
const std::vector<GaugeMat> &U,
const int R1, const int R2) {
LatticeComplex siteWl(U[0]._grid);
Wl = zero;
for (int mu = 1; mu < U[0]._grid->_ndimension - 1; mu++) {
for (int nu = 0; nu < mu; nu++) {
traceWilsonLoop(siteWl, U, R1, R2, mu, nu);
Wl = Wl + siteWl;
traceWilsonLoop(siteWl, U, R2, R1, mu, nu);
Wl = Wl + siteWl;
}
}
}
//////////////////////////////////////////////////
// sum over all x,y,z,t and over all planes of Wilson loop
//////////////////////////////////////////////////
static Real sumWilsonLoop(const GaugeLorentz &Umu,
const int R1, const int R2) {
std::vector<GaugeMat> U(4, Umu._grid);
for (int mu = 0; mu < Umu._grid->_ndimension; mu++) {
U[mu] = PeekIndex<LorentzIndex>(Umu, mu);
}
LatticeComplex Wl(Umu._grid);
siteWilsonLoop(Wl, U, R1, R2);
TComplex Tp = sum(Wl);
Complex p = TensorRemove(Tp);
return p.real();
}
//////////////////////////////////////////////////
// sum over all x,y,z,t and over all planes of timelike Wilson loop
//////////////////////////////////////////////////
static Real sumTimelikeWilsonLoop(const GaugeLorentz &Umu,
const int R1, const int R2) {
std::vector<GaugeMat> U(4, Umu._grid);
for (int mu = 0; mu < Umu._grid->_ndimension; mu++) {
U[mu] = PeekIndex<LorentzIndex>(Umu, mu);
}
LatticeComplex Wl(Umu._grid);
siteTimelikeWilsonLoop(Wl, U, R1, R2);
TComplex Tp = sum(Wl);
Complex p = TensorRemove(Tp);
return p.real();
}
//////////////////////////////////////////////////
// sum over all x,y,z,t and over all planes of spatial Wilson loop
//////////////////////////////////////////////////
static Real sumSpatialWilsonLoop(const GaugeLorentz &Umu,
const int R1, const int R2) {
std::vector<GaugeMat> U(4, Umu._grid);
for (int mu = 0; mu < Umu._grid->_ndimension; mu++) {
U[mu] = PeekIndex<LorentzIndex>(Umu, mu);
}
LatticeComplex Wl(Umu._grid);
siteSpatialWilsonLoop(Wl, U, R1, R2);
TComplex Tp = sum(Wl);
Complex p = TensorRemove(Tp);
return p.real();
}
//////////////////////////////////////////////////
// average over all x,y,z,t and over all planes of Wilson loop
//////////////////////////////////////////////////
static Real avgWilsonLoop(const GaugeLorentz &Umu,
const int R1, const int R2) {
int ndim = Umu._grid->_ndimension;
Real sumWl = sumWilsonLoop(Umu, R1, R2);
Real vol = Umu._grid->gSites();
Real faces = 1.0 * ndim * (ndim - 1);
return sumWl / vol / faces / Nc; // Nc dependent... FIXME
}
//////////////////////////////////////////////////
// average over all x,y,z,t and over all planes of timelike Wilson loop
//////////////////////////////////////////////////
static Real avgTimelikeWilsonLoop(const GaugeLorentz &Umu,
const int R1, const int R2) {
int ndim = Umu._grid->_ndimension;
Real sumWl = sumTimelikeWilsonLoop(Umu, R1, R2);
Real vol = Umu._grid->gSites();
Real faces = 1.0 * (ndim - 1);
return sumWl / vol / faces / Nc; // Nc dependent... FIXME
}
//////////////////////////////////////////////////
// average over all x,y,z,t and over all planes of spatial Wilson loop
//////////////////////////////////////////////////
static Real avgSpatialWilsonLoop(const GaugeLorentz &Umu,
const int R1, const int R2) {
int ndim = Umu._grid->_ndimension;
Real sumWl = sumSpatialWilsonLoop(Umu, R1, R2);
Real vol = Umu._grid->gSites();
Real faces = 1.0 * (ndim - 1) * (ndim - 2);
return sumWl / vol / faces / Nc; // Nc dependent... FIXME
}
};
END_QEDFVOL_NAMESPACE
#endif // QEDFVOL_WILSONLOOPS_H

88
extras/qed-fvol/qed-fvol.cc Normal file
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@ -0,0 +1,88 @@
#include <Global.hpp>
#include <WilsonLoops.h>
using namespace Grid;
using namespace QCD;
using namespace QedFVol;
typedef PeriodicGaugeImpl<QedGimplR> QedPeriodicGimplR;
typedef PhotonR::GaugeField EmField;
typedef PhotonR::GaugeLinkField EmComp;
const int NCONFIGS = 10;
const int NWILSON = 10;
int main(int argc, char *argv[])
{
// parse command line
std::string parameterFileName;
if (argc < 2)
{
std::cerr << "usage: " << argv[0] << " <parameter file> [Grid options]";
std::cerr << std::endl;
std::exit(EXIT_FAILURE);
}
parameterFileName = argv[1];
// initialization
Grid_init(&argc, &argv);
QedFVolLogError.Active(GridLogError.isActive());
QedFVolLogWarning.Active(GridLogWarning.isActive());
QedFVolLogMessage.Active(GridLogMessage.isActive());
QedFVolLogIterative.Active(GridLogIterative.isActive());
QedFVolLogDebug.Active(GridLogDebug.isActive());
LOG(Message) << "Grid initialized" << std::endl;
// QED stuff
std::vector<int> latt_size = GridDefaultLatt();
std::vector<int> simd_layout = GridDefaultSimd(4, vComplex::Nsimd());
std::vector<int> mpi_layout = GridDefaultMpi();
GridCartesian grid(latt_size,simd_layout,mpi_layout);
GridParallelRNG pRNG(&grid);
PhotonR photon(PhotonR::Gauge::feynman,
PhotonR::ZmScheme::qedL);
EmField a(&grid);
EmField expA(&grid);
Complex imag_unit(0, 1);
Real wlA;
std::vector<Real> logWlAvg(NWILSON, 0.0), logWlTime(NWILSON, 0.0), logWlSpace(NWILSON, 0.0);
pRNG.SeedRandomDevice();
LOG(Message) << "Wilson loop calculation beginning" << std::endl;
for(int ic = 0; ic < NCONFIGS; ic++){
LOG(Message) << "Configuration " << ic <<std::endl;
photon.StochasticField(a, pRNG);
// Exponentiate photon field
expA = exp(imag_unit*a);
// Calculate Wilson loops
for(int iw=1; iw<=NWILSON; iw++){
wlA = NewWilsonLoops<QedPeriodicGimplR>::avgWilsonLoop(expA, iw, iw) * 3;
logWlAvg[iw-1] -= 2*log(wlA);
wlA = NewWilsonLoops<QedPeriodicGimplR>::avgTimelikeWilsonLoop(expA, iw, iw) * 3;
logWlTime[iw-1] -= 2*log(wlA);
wlA = NewWilsonLoops<QedPeriodicGimplR>::avgSpatialWilsonLoop(expA, iw, iw) * 3;
logWlSpace[iw-1] -= 2*log(wlA);
}
}
LOG(Message) << "Wilson loop calculation completed" << std::endl;
// Calculate Wilson loops
for(int iw=1; iw<=10; iw++){
LOG(Message) << iw << 'x' << iw << " Wilson loop" << std::endl;
LOG(Message) << "-2log(W) average: " << logWlAvg[iw-1]/NCONFIGS << std::endl;
LOG(Message) << "-2log(W) timelike: " << logWlTime[iw-1]/NCONFIGS << std::endl;
LOG(Message) << "-2log(W) spatial: " << logWlSpace[iw-1]/NCONFIGS << std::endl;
}
// epilogue
LOG(Message) << "Grid is finalizing now" << std::endl;
Grid_finalize();
return EXIT_SUCCESS;
}

2
lib/Grid.h
View File

@ -41,7 +41,9 @@ Author: paboyle <paboyle@ph.ed.ac.uk>
#include <Grid/GridCore.h>
#include <Grid/GridQCDcore.h>
#include <Grid/qcd/action/Action.h>
#include <Grid/qcd/utils/GaugeFix.h>
#include <Grid/qcd/smearing/Smearing.h>
#include <Grid/parallelIO/MetaData.h>
#include <Grid/qcd/hmc/HMC_aggregate.h>
#endif

2
lib/GridStd.h
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@ -7,6 +7,7 @@
#include <cassert>
#include <complex>
#include <vector>
#include <string>
#include <iostream>
#include <iomanip>
#include <random>
@ -18,6 +19,7 @@
#include <ctime>
#include <sys/time.h>
#include <chrono>
#include <zlib.h>
///////////////////
// Grid config

137
lib/algorithms/densematrix/DenseMatrix.h
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@ -1,137 +0,0 @@
/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: ./lib/algorithms/iterative/DenseMatrix.h
Copyright (C) 2015
Author: Peter Boyle <paboyle@ph.ed.ac.uk>
Author: paboyle <paboyle@ph.ed.ac.uk>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#ifndef GRID_DENSE_MATRIX_H
#define GRID_DENSE_MATRIX_H
namespace Grid {
/////////////////////////////////////////////////////////////
// Matrix untils
/////////////////////////////////////////////////////////////
template<class T> using DenseVector = std::vector<T>;
template<class T> using DenseMatrix = DenseVector<DenseVector<T> >;
template<class T> void Size(DenseVector<T> & vec, int &N)
{
N= vec.size();
}
template<class T> void Size(DenseMatrix<T> & mat, int &N,int &M)
{
N= mat.size();
M= mat[0].size();
}
template<class T> void SizeSquare(DenseMatrix<T> & mat, int &N)
{
int M; Size(mat,N,M);
assert(N==M);
}
template<class T> void Resize(DenseVector<T > & mat, int N) {
mat.resize(N);
}
template<class T> void Resize(DenseMatrix<T > & mat, int N, int M) {
mat.resize(N);
for(int i=0;i<N;i++){
mat[i].resize(M);
}
}
template<class T> void Fill(DenseMatrix<T> & mat, T&val) {
int N,M;
Size(mat,N,M);
for(int i=0;i<N;i++){
for(int j=0;j<M;j++){
mat[i][j] = val;
}}
}
/** Transpose of a matrix **/
template<class T> DenseMatrix<T> Transpose(DenseMatrix<T> & mat){
int N,M;
Size(mat,N,M);
DenseMatrix<T> C; Resize(C,M,N);
for(int i=0;i<M;i++){
for(int j=0;j<N;j++){
C[i][j] = mat[j][i];
}}
return C;
}
/** Set DenseMatrix to unit matrix **/
template<class T> void Unity(DenseMatrix<T> &A){
int N; SizeSquare(A,N);
for(int i=0;i<N;i++){
for(int j=0;j<N;j++){
if ( i==j ) A[i][j] = 1;
else A[i][j] = 0;
}
}
}
/** Add C * I to matrix **/
template<class T>
void PlusUnit(DenseMatrix<T> & A,T c){
int dim; SizeSquare(A,dim);
for(int i=0;i<dim;i++){A[i][i] = A[i][i] + c;}
}
/** return the Hermitian conjugate of matrix **/
template<class T>
DenseMatrix<T> HermitianConj(DenseMatrix<T> &mat){
int dim; SizeSquare(mat,dim);
DenseMatrix<T> C; Resize(C,dim,dim);
for(int i=0;i<dim;i++){
for(int j=0;j<dim;j++){
C[i][j] = conj(mat[j][i]);
}
}
return C;
}
/**Get a square submatrix**/
template <class T>
DenseMatrix<T> GetSubMtx(DenseMatrix<T> &A,int row_st, int row_end, int col_st, int col_end)
{
DenseMatrix<T> H; Resize(H,row_end - row_st,col_end-col_st);
for(int i = row_st; i<row_end; i++){
for(int j = col_st; j<col_end; j++){
H[i-row_st][j-col_st]=A[i][j];
}}
return H;
}
}
#include "Householder.h"
#include "Francis.h"
#endif

525
lib/algorithms/densematrix/Francis.h
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@ -1,525 +0,0 @@
/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: ./lib/algorithms/iterative/Francis.h
Copyright (C) 2015
Author: Peter Boyle <paboyle@ph.ed.ac.uk>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#ifndef FRANCIS_H
#define FRANCIS_H
#include <cstdlib>
#include <string>
#include <cmath>
#include <iostream>
#include <sstream>
#include <stdexcept>
#include <fstream>
#include <complex>
#include <algorithm>
//#include <timer.h>
//#include <lapacke.h>
//#include <Eigen/Dense>
namespace Grid {
template <class T> int SymmEigensystem(DenseMatrix<T > &Ain, DenseVector<T> &evals, DenseMatrix<T> &evecs, RealD small);
template <class T> int Eigensystem(DenseMatrix<T > &Ain, DenseVector<T> &evals, DenseMatrix<T> &evecs, RealD small);
/**
Find the eigenvalues of an upper hessenberg matrix using the Francis QR algorithm.
H =
x x x x x x x x x
x x x x x x x x x
0 x x x x x x x x
0 0 x x x x x x x
0 0 0 x x x x x x
0 0 0 0 x x x x x
0 0 0 0 0 x x x x
0 0 0 0 0 0 x x x
0 0 0 0 0 0 0 x x
Factorization is P T P^H where T is upper triangular (mod cc blocks) and P is orthagonal/unitary.
**/
template <class T>
int QReigensystem(DenseMatrix<T> &Hin, DenseVector<T> &evals, DenseMatrix<T> &evecs, RealD small)
{
DenseMatrix<T> H = Hin;
int N ; SizeSquare(H,N);
int M = N;
Fill(evals,0);
Fill(evecs,0);
T s,t,x=0,y=0,z=0;
T u,d;
T apd,amd,bc;
DenseVector<T> p(N,0);
T nrm = Norm(H); ///DenseMatrix Norm
int n, m;
int e = 0;
int it = 0;
int tot_it = 0;
int l = 0;
int r = 0;
DenseMatrix<T> P; Resize(P,N,N); Unity(P);
DenseVector<int> trows(N,0);
/// Check if the matrix is really hessenberg, if not abort
RealD sth = 0;
for(int j=0;j<N;j++){
for(int i=j+2;i<N;i++){
sth = abs(H[i][j]);
if(sth > small){
std::cout << "Non hessenberg H = " << sth << " > " << small << std::endl;
exit(1);
}
}
}
do{
std::cout << "Francis QR Step N = " << N << std::endl;
/** Check for convergence
x x x x x
0 x x x x
0 0 x x x
0 0 x x x
0 0 0 0 x
for this matrix l = 4
**/
do{
l = Chop_subdiag(H,nrm,e,small);
r = 0; ///May have converged on more than one eval
///Single eval
if(l == N-1){
evals[e] = H[l][l];
N--; e++; r++; it = 0;
}
///RealD eval
if(l == N-2){
trows[l+1] = 1; ///Needed for UTSolve
apd = H[l][l] + H[l+1][l+1];
amd = H[l][l] - H[l+1][l+1];
bc = (T)4.0*H[l+1][l]*H[l][l+1];
evals[e] = (T)0.5*( apd + sqrt(amd*amd + bc) );
evals[e+1] = (T)0.5*( apd - sqrt(amd*amd + bc) );
N-=2; e+=2; r++; it = 0;
}
} while(r>0);
if(N ==0) break;
DenseVector<T > ck; Resize(ck,3);
DenseVector<T> v; Resize(v,3);
for(int m = N-3; m >= l; m--){
///Starting vector essentially random shift.
if(it%10 == 0 && N >= 3 && it > 0){
s = (T)1.618033989*( abs( H[N-1][N-2] ) + abs( H[N-2][N-3] ) );
t = (T)0.618033989*( abs( H[N-1][N-2] ) + abs( H[N-2][N-3] ) );
x = H[m][m]*H[m][m] + H[m][m+1]*H[m+1][m] - s*H[m][m] + t;
y = H[m+1][m]*(H[m][m] + H[m+1][m+1] - s);
z = H[m+1][m]*H[m+2][m+1];
}
///Starting vector implicit Q theorem
else{
s = (H[N-2][N-2] + H[N-1][N-1]);
t = (H[N-2][N-2]*H[N-1][N-1] - H[N-2][N-1]*H[N-1][N-2]);
x = H[m][m]*H[m][m] + H[m][m+1]*H[m+1][m] - s*H[m][m] + t;
y = H[m+1][m]*(H[m][m] + H[m+1][m+1] - s);
z = H[m+1][m]*H[m+2][m+1];
}
ck[0] = x; ck[1] = y; ck[2] = z;
if(m == l) break;
/** Some stupid thing from numerical recipies, seems to work**/
// PAB.. for heaven's sake quote page, purpose, evidence it works.
// what sort of comment is that!?!?!?
u=abs(H[m][m-1])*(abs(y)+abs(z));
d=abs(x)*(abs(H[m-1][m-1])+abs(H[m][m])+abs(H[m+1][m+1]));
if ((T)abs(u+d) == (T)abs(d) ){
l = m; break;
}
//if (u < small){l = m; break;}
}
if(it > 100000){
std::cout << "QReigensystem: bugger it got stuck after 100000 iterations" << std::endl;
std::cout << "got " << e << " evals " << l << " " << N << std::endl;
exit(1);
}
normalize(ck); ///Normalization cancels in PHP anyway
T beta;
Householder_vector<T >(ck, 0, 2, v, beta);
Householder_mult<T >(H,v,beta,0,l,l+2,0);
Householder_mult<T >(H,v,beta,0,l,l+2,1);
///Accumulate eigenvector
Householder_mult<T >(P,v,beta,0,l,l+2,1);
int sw = 0; ///Are we on the last row?
for(int k=l;k<N-2;k++){
x = H[k+1][k];
y = H[k+2][k];
z = (T)0.0;
if(k+3 <= N-1){
z = H[k+3][k];
} else{
sw = 1;
v[2] = (T)0.0;
}
ck[0] = x; ck[1] = y; ck[2] = z;
normalize(ck);
Householder_vector<T >(ck, 0, 2-sw, v, beta);
Householder_mult<T >(H,v, beta,0,k+1,k+3-sw,0);
Householder_mult<T >(H,v, beta,0,k+1,k+3-sw,1);
///Accumulate eigenvector
Householder_mult<T >(P,v, beta,0,k+1,k+3-sw,1);
}
it++;
tot_it++;
}while(N > 1);
N = evals.size();
///Annoying - UT solves in reverse order;
DenseVector<T> tmp; Resize(tmp,N);
for(int i=0;i<N;i++){
tmp[i] = evals[N-i-1];
}
evals = tmp;
UTeigenvectors(H, trows, evals, evecs);
for(int i=0;i<evals.size();i++){evecs[i] = P*evecs[i]; normalize(evecs[i]);}
return tot_it;
}
template <class T>
int my_Wilkinson(DenseMatrix<T> &Hin, DenseVector<T> &evals, DenseMatrix<T> &evecs, RealD small)
{
/**
Find the eigenvalues of an upper Hessenberg matrix using the Wilkinson QR algorithm.
H =
x x 0 0 0 0
x x x 0 0 0
0 x x x 0 0
0 0 x x x 0
0 0 0 x x x
0 0 0 0 x x
Factorization is P T P^H where T is upper triangular (mod cc blocks) and P is orthagonal/unitary. **/
return my_Wilkinson(Hin, evals, evecs, small, small);
}
template <class T>
int my_Wilkinson(DenseMatrix<T> &Hin, DenseVector<T> &evals, DenseMatrix<T> &evecs, RealD small, RealD tol)
{
int N; SizeSquare(Hin,N);
int M = N;
///I don't want to modify the input but matricies must be passed by reference
//Scale a matrix by its "norm"
//RealD Hnorm = abs( Hin.LargestDiag() ); H = H*(1.0/Hnorm);
DenseMatrix<T> H; H = Hin;
RealD Hnorm = abs(Norm(Hin));
H = H * (1.0 / Hnorm);
// TODO use openmp and memset
Fill(evals,0);
Fill(evecs,0);
T s, t, x = 0, y = 0, z = 0;
T u, d;
T apd, amd, bc;
DenseVector<T> p; Resize(p,N); Fill(p,0);
T nrm = Norm(H); ///DenseMatrix Norm
int n, m;
int e = 0;
int it = 0;
int tot_it = 0;
int l = 0;
int r = 0;
DenseMatrix<T> P; Resize(P,N,N);
Unity(P);
DenseVector<int> trows(N, 0);
/// Check if the matrix is really symm tridiag
RealD sth = 0;
for(int j = 0; j < N; ++j)
{
for(int i = j + 2; i < N; ++i)
{
if(abs(H[i][j]) > tol || abs(H[j][i]) > tol)
{
std::cout << "Non Tridiagonal H(" << i << ","<< j << ") = |" << Real( real( H[j][i] ) ) << "| > " << tol << std::endl;
std::cout << "Warning tridiagonalize and call again" << std::endl;
// exit(1); // see what is going on
//return;
}
}
}
do{
do{
//Jasper
//Check if the subdiagonal term is small enough (<small)
//if true then it is converged.
//check start from H.dim - e - 1
//How to deal with more than 2 are converged?
//What if Chop_symm_subdiag return something int the middle?
//--------------
l = Chop_symm_subdiag(H,nrm, e, small);
r = 0; ///May have converged on more than one eval
//Jasper
//In this case
// x x 0 0 0 0
// x x x 0 0 0
// 0 x x x 0 0
// 0 0 x x x 0
// 0 0 0 x x 0
// 0 0 0 0 0 x <- l
//--------------
///Single eval
if(l == N - 1)
{
evals[e] = H[l][l];
N--;
e++;
r++;
it = 0;
}
//Jasper
// x x 0 0 0 0
// x x x 0 0 0
// 0 x x x 0 0
// 0 0 x x 0 0
// 0 0 0 0 x x <- l
// 0 0 0 0 x x
//--------------
///RealD eval
if(l == N - 2)
{
trows[l + 1] = 1; ///Needed for UTSolve
apd = H[l][l] + H[l + 1][ l + 1];
amd = H[l][l] - H[l + 1][l + 1];
bc = (T) 4.0 * H[l + 1][l] * H[l][l + 1];
evals[e] = (T) 0.5 * (apd + sqrt(amd * amd + bc));
evals[e + 1] = (T) 0.5 * (apd - sqrt(amd * amd + bc));
N -= 2;
e += 2;
r++;
it = 0;
}
}while(r > 0);
//Jasper
//Already converged
//--------------
if(N == 0) break;
DenseVector<T> ck,v; Resize(ck,2); Resize(v,2);
for(int m = N - 3; m >= l; m--)
{
///Starting vector essentially random shift.
if(it%10 == 0 && N >= 3 && it > 0)
{
t = abs(H[N - 1][N - 2]) + abs(H[N - 2][N - 3]);
x = H[m][m] - t;
z = H[m + 1][m];
} else {
///Starting vector implicit Q theorem
d = (H[N - 2][N - 2] - H[N - 1][N - 1]) * (T) 0.5;
t = H[N - 1][N - 1] - H[N - 1][N - 2] * H[N - 1][N - 2]
/ (d + sign(d) * sqrt(d * d + H[N - 1][N - 2] * H[N - 1][N - 2]));
x = H[m][m] - t;
z = H[m + 1][m];
}
//Jasper
//why it is here????
//-----------------------
if(m == l)
break;
u = abs(H[m][m - 1]) * (abs(y) + abs(z));
d = abs(x) * (abs(H[m - 1][m - 1]) + abs(H[m][m]) + abs(H[m + 1][m + 1]));
if ((T)abs(u + d) == (T)abs(d))
{
l = m;
break;
}
}
//Jasper
if(it > 1000000)
{
std::cout << "Wilkinson: bugger it got stuck after 100000 iterations" << std::endl;
std::cout << "got " << e << " evals " << l << " " << N << std::endl;
exit(1);
}
//
T s, c;
Givens_calc<T>(x, z, c, s);
Givens_mult<T>(H, l, l + 1, c, -s, 0);
Givens_mult<T>(H, l, l + 1, c, s, 1);
Givens_mult<T>(P, l, l + 1, c, s, 1);
//
for(int k = l; k < N - 2; ++k)
{
x = H.A[k + 1][k];
z = H.A[k + 2][k];
Givens_calc<T>(x, z, c, s);
Givens_mult<T>(H, k + 1, k + 2, c, -s, 0);
Givens_mult<T>(H, k + 1, k + 2, c, s, 1);
Givens_mult<T>(P, k + 1, k + 2, c, s, 1);
}
it++;
tot_it++;
}while(N > 1);
N = evals.size();
///Annoying - UT solves in reverse order;
DenseVector<T> tmp(N);
for(int i = 0; i < N; ++i)
tmp[i] = evals[N-i-1];
evals = tmp;
//
UTeigenvectors(H, trows, evals, evecs);
//UTSymmEigenvectors(H, trows, evals, evecs);
for(int i = 0; i < evals.size(); ++i)
{
evecs[i] = P * evecs[i];
normalize(evecs[i]);
evals[i] = evals[i] * Hnorm;
}
// // FIXME this is to test
// Hin.write("evecs3", evecs);
// Hin.write("evals3", evals);
// // check rsd
// for(int i = 0; i < M; i++) {
// vector<T> Aevec = Hin * evecs[i];
// RealD norm2(0.);
// for(int j = 0; j < M; j++) {
// norm2 += (Aevec[j] - evals[i] * evecs[i][j]) * (Aevec[j] - evals[i] * evecs[i][j]);
// }
// }
return tot_it;
}
template <class T>
void Hess(DenseMatrix<T > &A, DenseMatrix<T> &Q, int start){
/**
turn a matrix A =
x x x x x
x x x x x
x x x x x
x x x x x
x x x x x
into
x x x x x
x x x x x
0 x x x x
0 0 x x x
0 0 0 x x
with householder rotations
Slow.
*/
int N ; SizeSquare(A,N);
DenseVector<T > p; Resize(p,N); Fill(p,0);
for(int k=start;k<N-2;k++){
//cerr << "hess" << k << std::endl;
DenseVector<T > ck,v; Resize(ck,N-k-1); Resize(v,N-k-1);
for(int i=k+1;i<N;i++){ck[i-k-1] = A(i,k);} ///kth column
normalize(ck); ///Normalization cancels in PHP anyway
T beta;
Householder_vector<T >(ck, 0, ck.size()-1, v, beta); ///Householder vector
Householder_mult<T>(A,v,beta,start,k+1,N-1,0); ///A -> PA
Householder_mult<T >(A,v,beta,start,k+1,N-1,1); ///PA -> PAP^H
///Accumulate eigenvector
Householder_mult<T >(Q,v,beta,start,k+1,N-1,1); ///Q -> QP^H
}
/*for(int l=0;l<N-2;l++){
for(int k=l+2;k<N;k++){
A(0,k,l);
}
}*/
}
template <class T>
void Tri(DenseMatrix<T > &A, DenseMatrix<T> &Q, int start){
///Tridiagonalize a matrix
int N; SizeSquare(A,N);
Hess(A,Q,start);
/*for(int l=0;l<N-2;l++){
for(int k=l+2;k<N;k++){
A(0,l,k);
}
}*/
}
template <class T>
void ForceTridiagonal(DenseMatrix<T> &A){
///Tridiagonalize a matrix
int N ; SizeSquare(A,N);
for(int l=0;l<N-2;l++){
for(int k=l+2;k<N;k++){
A[l][k]=0;
A[k][l]=0;
}
}
}
template <class T>
int my_SymmEigensystem(DenseMatrix<T > &Ain, DenseVector<T> &evals, DenseVector<DenseVector<T> > &evecs, RealD small){
///Solve a symmetric eigensystem, not necessarily in tridiagonal form
int N; SizeSquare(Ain,N);
DenseMatrix<T > A; A = Ain;
DenseMatrix<T > Q; Resize(Q,N,N); Unity(Q);
Tri(A,Q,0);
int it = my_Wilkinson<T>(A, evals, evecs, small);
for(int k=0;k<N;k++){evecs[k] = Q*evecs[k];}
return it;
}
template <class T>
int Wilkinson(DenseMatrix<T> &Ain, DenseVector<T> &evals, DenseVector<DenseVector<T> > &evecs, RealD small){
return my_Wilkinson(Ain, evals, evecs, small);
}
template <class T>
int SymmEigensystem(DenseMatrix<T> &Ain, DenseVector<T> &evals, DenseVector<DenseVector<T> > &evecs, RealD small){
return my_SymmEigensystem(Ain, evals, evecs, small);
}
template <class T>
int Eigensystem(DenseMatrix<T > &Ain, DenseVector<T> &evals, DenseVector<DenseVector<T> > &evecs, RealD small){
///Solve a general eigensystem, not necessarily in tridiagonal form
int N = Ain.dim;
DenseMatrix<T > A(N); A = Ain;
DenseMatrix<T > Q(N);Q.Unity();
Hess(A,Q,0);
int it = QReigensystem<T>(A, evals, evecs, small);
for(int k=0;k<N;k++){evecs[k] = Q*evecs[k];}
return it;
}
}
#endif

242
lib/algorithms/densematrix/Householder.h
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@ -1,242 +0,0 @@
/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: ./lib/algorithms/iterative/Householder.h
Copyright (C) 2015
Author: Peter Boyle <paboyle@ph.ed.ac.uk>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#ifndef HOUSEHOLDER_H
#define HOUSEHOLDER_H
#define TIMER(A) std::cout << GridLogMessage << __FUNC__ << " file "<< __FILE__ <<" line " << __LINE__ << std::endl;
#define ENTER() std::cout << GridLogMessage << "ENTRY "<<__FUNC__ << " file "<< __FILE__ <<" line " << __LINE__ << std::endl;
#define LEAVE() std::cout << GridLogMessage << "EXIT "<<__FUNC__ << " file "<< __FILE__ <<" line " << __LINE__ << std::endl;
#include <cstdlib>
#include <string>
#include <cmath>
#include <iostream>
#include <sstream>
#include <stdexcept>
#include <fstream>
#include <complex>
#include <algorithm>
namespace Grid {
/** Comparison function for finding the max element in a vector **/
template <class T> bool cf(T i, T j) {
return abs(i) < abs(j);
}
/**
Calculate a real Givens angle
**/
template <class T> inline void Givens_calc(T y, T z, T &c, T &s){
RealD mz = (RealD)abs(z);
if(mz==0.0){
c = 1; s = 0;
}
if(mz >= (RealD)abs(y)){
T t = -y/z;
s = (T)1.0 / sqrt ((T)1.0 + t * t);
c = s * t;
} else {
T t = -z/y;
c = (T)1.0 / sqrt ((T)1.0 + t * t);
s = c * t;
}
}
template <class T> inline void Givens_mult(DenseMatrix<T> &A, int i, int k, T c, T s, int dir)
{
int q ; SizeSquare(A,q);
if(dir == 0){
for(int j=0;j<q;j++){
T nu = A[i][j];
T w = A[k][j];
A[i][j] = (c*nu + s*w);
A[k][j] = (-s*nu + c*w);
}
}
if(dir == 1){
for(int j=0;j<q;j++){
T nu = A[j][i];
T w = A[j][k];
A[j][i] = (c*nu - s*w);
A[j][k] = (s*nu + c*w);
}
}
}
/**
from input = x;
Compute the complex Householder vector, v, such that
P = (I - b v transpose(v) )
b = 2/v.v
P | x | | x | k = 0
| x | | 0 |
| x | = | 0 |
| x | | 0 | j = 3
| x | | x |
These are the "Unreduced" Householder vectors.
**/
template <class T> inline void Householder_vector(DenseVector<T> input, int k, int j, DenseVector<T> &v, T &beta)
{
int N ; Size(input,N);
T m = *max_element(input.begin() + k, input.begin() + j + 1, cf<T> );
if(abs(m) > 0.0){
T alpha = 0;
for(int i=k; i<j+1; i++){
v[i] = input[i]/m;
alpha = alpha + v[i]*conj(v[i]);
}
alpha = sqrt(alpha);
beta = (T)1.0/(alpha*(alpha + abs(v[k]) ));
if(abs(v[k]) > 0.0) v[k] = v[k] + (v[k]/abs(v[k]))*alpha;
else v[k] = -alpha;
} else{
for(int i=k; i<j+1; i++){
v[i] = 0.0;
}
}
}
/**
from input = x;
Compute the complex Householder vector, v, such that
P = (I - b v transpose(v) )
b = 2/v.v
Px = alpha*e_dir
These are the "Unreduced" Householder vectors.
**/
template <class T> inline void Householder_vector(DenseVector<T> input, int k, int j, int dir, DenseVector<T> &v, T &beta)
{
int N = input.size();
T m = *max_element(input.begin() + k, input.begin() + j + 1, cf);
if(abs(m) > 0.0){
T alpha = 0;
for(int i=k; i<j+1; i++){
v[i] = input[i]/m;
alpha = alpha + v[i]*conj(v[i]);
}
alpha = sqrt(alpha);
beta = 1.0/(alpha*(alpha + abs(v[dir]) ));
if(abs(v[dir]) > 0.0) v[dir] = v[dir] + (v[dir]/abs(v[dir]))*alpha;
else v[dir] = -alpha;
}else{
for(int i=k; i<j+1; i++){
v[i] = 0.0;
}
}
}
/**
Compute the product PA if trans = 0
AP if trans = 1
P = (I - b v transpose(v) )
b = 2/v.v
start at element l of matrix A
v is of length j - k + 1 of v are nonzero
**/
template <class T> inline void Householder_mult(DenseMatrix<T> &A , DenseVector<T> v, T beta, int l, int k, int j, int trans)
{
int N ; SizeSquare(A,N);
if(abs(beta) > 0.0){
for(int p=l; p<N; p++){
T s = 0;
if(trans==0){
for(int i=k;i<j+1;i++) s += conj(v[i-k])*A[i][p];
s *= beta;
for(int i=k;i<j+1;i++){ A[i][p] = A[i][p]-s*conj(v[i-k]);}
} else {
for(int i=k;i<j+1;i++){ s += conj(v[i-k])*A[p][i];}
s *= beta;
for(int i=k;i<j+1;i++){ A[p][i]=A[p][i]-s*conj(v[i-k]);}
}
}
}
}
/**
Compute the product PA if trans = 0
AP if trans = 1
P = (I - b v transpose(v) )
b = 2/v.v
start at element l of matrix A
v is of length j - k + 1 of v are nonzero
A is tridiagonal
**/
template <class T> inline void Householder_mult_tri(DenseMatrix<T> &A , DenseVector<T> v, T beta, int l, int M, int k, int j, int trans)
{
if(abs(beta) > 0.0){
int N ; SizeSquare(A,N);
DenseMatrix<T> tmp; Resize(tmp,N,N); Fill(tmp,0);
T s;
for(int p=l; p<M; p++){
s = 0;
if(trans==0){
for(int i=k;i<j+1;i++) s = s + conj(v[i-k])*A[i][p];
}else{
for(int i=k;i<j+1;i++) s = s + v[i-k]*A[p][i];
}
s = beta*s;
if(trans==0){
for(int i=k;i<j+1;i++) tmp[i][p] = tmp(i,p) - s*v[i-k];
}else{
for(int i=k;i<j+1;i++) tmp[p][i] = tmp[p][i] - s*conj(v[i-k]);
}
}
for(int p=l; p<M; p++){
if(trans==0){
for(int i=k;i<j+1;i++) A[i][p] = A[i][p] + tmp[i][p];
}else{
for(int i=k;i<j+1;i++) A[p][i] = A[p][i] + tmp[p][i];
}
}
}
}
}
#endif

307
lib/algorithms/iterative/BlockConjugateGradient.h
View File

@ -33,6 +33,8 @@ directory
namespace Grid {
enum BlockCGtype { BlockCG, BlockCGrQ, CGmultiRHS };
//////////////////////////////////////////////////////////////////////////
// Block conjugate gradient. Dimension zero should be the block direction
//////////////////////////////////////////////////////////////////////////
@ -40,25 +42,273 @@ template <class Field>
class BlockConjugateGradient : public OperatorFunction<Field> {
public:
typedef typename Field::scalar_type scomplex;
const int blockDim = 0;
int blockDim ;
int Nblock;
BlockCGtype CGtype;
bool ErrorOnNoConverge; // throw an assert when the CG fails to converge.
// Defaults true.
RealD Tolerance;
Integer MaxIterations;
Integer IterationsToComplete; //Number of iterations the CG took to finish. Filled in upon completion
BlockConjugateGradient(RealD tol, Integer maxit, bool err_on_no_conv = true)
: Tolerance(tol),
MaxIterations(maxit),
ErrorOnNoConverge(err_on_no_conv){};
BlockConjugateGradient(BlockCGtype cgtype,int _Orthog,RealD tol, Integer maxit, bool err_on_no_conv = true)
: Tolerance(tol), CGtype(cgtype), blockDim(_Orthog), MaxIterations(maxit), ErrorOnNoConverge(err_on_no_conv)
{};
////////////////////////////////////////////////////////////////////////////////////////////////////
// Thin QR factorisation (google it)
////////////////////////////////////////////////////////////////////////////////////////////////////
void ThinQRfact (Eigen::MatrixXcd &m_rr,
Eigen::MatrixXcd &C,
Eigen::MatrixXcd &Cinv,
Field & Q,
const Field & R)
{
int Orthog = blockDim; // First dimension is block dim; this is an assumption
////////////////////////////////////////////////////////////////////////////////////////////////////
//Dimensions
// R_{ferm x Nblock} = Q_{ferm x Nblock} x C_{Nblock x Nblock} -> ferm x Nblock
//
// Rdag R = m_rr = Herm = L L^dag <-- Cholesky decomposition (LLT routine in Eigen)
//
// Q C = R => Q = R C^{-1}
//
// Want Ident = Q^dag Q = C^{-dag} R^dag R C^{-1} = C^{-dag} L L^dag C^{-1} = 1_{Nblock x Nblock}
//
// Set C = L^{dag}, and then Q^dag Q = ident
//
// Checks:
// Cdag C = Rdag R ; passes.
// QdagQ = 1 ; passes
////////////////////////////////////////////////////////////////////////////////////////////////////
sliceInnerProductMatrix(m_rr,R,R,Orthog);
////////////////////////////////////////////////////////////////////////////////////////////////////
// Cholesky from Eigen
// There exists a ldlt that is documented as more stable
////////////////////////////////////////////////////////////////////////////////////////////////////
Eigen::MatrixXcd L = m_rr.llt().matrixL();
C = L.adjoint();
Cinv = C.inverse();
////////////////////////////////////////////////////////////////////////////////////////////////////
// Q = R C^{-1}
//
// Q_j = R_i Cinv(i,j)
//
// NB maddMatrix conventions are Right multiplication X[j] a[j,i] already
////////////////////////////////////////////////////////////////////////////////////////////////////
// FIXME:: make a sliceMulMatrix to avoid zero vector
sliceMulMatrix(Q,Cinv,R,Orthog);
}
////////////////////////////////////////////////////////////////////////////////////////////////////
// Call one of several implementations
////////////////////////////////////////////////////////////////////////////////////////////////////
void operator()(LinearOperatorBase<Field> &Linop, const Field &Src, Field &Psi)
{
int Orthog = 0; // First dimension is block dim
if ( CGtype == BlockCGrQ ) {
BlockCGrQsolve(Linop,Src,Psi);
} else if (CGtype == BlockCG ) {
BlockCGsolve(Linop,Src,Psi);
} else if (CGtype == CGmultiRHS ) {
CGmultiRHSsolve(Linop,Src,Psi);
} else {
assert(0);
}
}
////////////////////////////////////////////////////////////////////////////
// BlockCGrQ implementation:
//--------------------------
// X is guess/Solution
// B is RHS
// Solve A X_i = B_i ; i refers to Nblock index
////////////////////////////////////////////////////////////////////////////
void BlockCGrQsolve(LinearOperatorBase<Field> &Linop, const Field &B, Field &X)
{
int Orthog = blockDim; // First dimension is block dim; this is an assumption
Nblock = B._grid->_fdimensions[Orthog];
std::cout<<GridLogMessage<<" Block Conjugate Gradient : Orthog "<<Orthog<<" Nblock "<<Nblock<<std::endl;
X.checkerboard = B.checkerboard;
conformable(X, B);
Field tmp(B);
Field Q(B);
Field D(B);
Field Z(B);
Field AD(B);
Eigen::MatrixXcd m_DZ = Eigen::MatrixXcd::Identity(Nblock,Nblock);
Eigen::MatrixXcd m_M = Eigen::MatrixXcd::Identity(Nblock,Nblock);
Eigen::MatrixXcd m_rr = Eigen::MatrixXcd::Zero(Nblock,Nblock);
Eigen::MatrixXcd m_C = Eigen::MatrixXcd::Zero(Nblock,Nblock);
Eigen::MatrixXcd m_Cinv = Eigen::MatrixXcd::Zero(Nblock,Nblock);
Eigen::MatrixXcd m_S = Eigen::MatrixXcd::Zero(Nblock,Nblock);
Eigen::MatrixXcd m_Sinv = Eigen::MatrixXcd::Zero(Nblock,Nblock);
Eigen::MatrixXcd m_tmp = Eigen::MatrixXcd::Identity(Nblock,Nblock);
Eigen::MatrixXcd m_tmp1 = Eigen::MatrixXcd::Identity(Nblock,Nblock);
// Initial residual computation & set up
std::vector<RealD> residuals(Nblock);
std::vector<RealD> ssq(Nblock);
sliceNorm(ssq,B,Orthog);
RealD sssum=0;
for(int b=0;b<Nblock;b++) sssum+=ssq[b];
sliceNorm(residuals,B,Orthog);
for(int b=0;b<Nblock;b++){ assert(std::isnan(residuals[b])==0); }
sliceNorm(residuals,X,Orthog);
for(int b=0;b<Nblock;b++){ assert(std::isnan(residuals[b])==0); }
/************************************************************************
* Block conjugate gradient rQ (Sebastien Birk Thesis, after Dubrulle 2001)
************************************************************************
* Dimensions:
*
* X,B==(Nferm x Nblock)
* A==(Nferm x Nferm)
*
* Nferm = Nspin x Ncolour x Ncomplex x Nlattice_site
*
* QC = R = B-AX, D = Q ; QC => Thin QR factorisation (google it)
* for k:
* Z = AD
* M = [D^dag Z]^{-1}
* X = X + D MC
* QS = Q - ZM
* D = Q + D S^dag
* C = S C
*/
///////////////////////////////////////
// Initial block: initial search dir is guess
///////////////////////////////////////
std::cout << GridLogMessage<<"BlockCGrQ algorithm initialisation " <<std::endl;
//1. QC = R = B-AX, D = Q ; QC => Thin QR factorisation (google it)
Linop.HermOp(X, AD);
tmp = B - AD;
ThinQRfact (m_rr, m_C, m_Cinv, Q, tmp);
D=Q;
std::cout << GridLogMessage<<"BlockCGrQ computed initial residual and QR fact " <<std::endl;
///////////////////////////////////////
// Timers
///////////////////////////////////////
GridStopWatch sliceInnerTimer;
GridStopWatch sliceMaddTimer;
GridStopWatch QRTimer;
GridStopWatch MatrixTimer;
GridStopWatch SolverTimer;
SolverTimer.Start();
int k;
for (k = 1; k <= MaxIterations; k++) {
//3. Z = AD
MatrixTimer.Start();
Linop.HermOp(D, Z);
MatrixTimer.Stop();
//4. M = [D^dag Z]^{-1}
sliceInnerTimer.Start();
sliceInnerProductMatrix(m_DZ,D,Z,Orthog);
sliceInnerTimer.Stop();
m_M = m_DZ.inverse();
//5. X = X + D MC
m_tmp = m_M * m_C;
sliceMaddTimer.Start();
sliceMaddMatrix(X,m_tmp, D,X,Orthog);
sliceMaddTimer.Stop();
//6. QS = Q - ZM
sliceMaddTimer.Start();
sliceMaddMatrix(tmp,m_M,Z,Q,Orthog,-1.0);
sliceMaddTimer.Stop();
QRTimer.Start();
ThinQRfact (m_rr, m_S, m_Sinv, Q, tmp);
QRTimer.Stop();
//7. D = Q + D S^dag
m_tmp = m_S.adjoint();
sliceMaddTimer.Start();
sliceMaddMatrix(D,m_tmp,D,Q,Orthog);
sliceMaddTimer.Stop();
//8. C = S C
m_C = m_S*m_C;
/*********************
* convergence monitor
*********************
*/
m_rr = m_C.adjoint() * m_C;
RealD max_resid=0;
RealD rrsum=0;
RealD rr;
for(int b=0;b<Nblock;b++) {
rrsum+=real(m_rr(b,b));
rr = real(m_rr(b,b))/ssq[b];
if ( rr > max_resid ) max_resid = rr;
}
std::cout << GridLogIterative << "\titeration "<<k<<" rr_sum "<<rrsum<<" ssq_sum "<< sssum
<<" ave "<<std::sqrt(rrsum/sssum) << " max "<< max_resid <<std::endl;
if ( max_resid < Tolerance*Tolerance ) {
SolverTimer.Stop();
std::cout << GridLogMessage<<"BlockCGrQ converged in "<<k<<" iterations"<<std::endl;
for(int b=0;b<Nblock;b++){
std::cout << GridLogMessage<< "\t\tblock "<<b<<" computed resid "
<< std::sqrt(real(m_rr(b,b))/ssq[b])<<std::endl;
}
std::cout << GridLogMessage<<"\tMax residual is "<<std::sqrt(max_resid)<<std::endl;
Linop.HermOp(X, AD);
AD = AD-B;
std::cout << GridLogMessage <<"\t True residual is " << std::sqrt(norm2(AD)/norm2(B)) <<std::endl;
std::cout << GridLogMessage << "Time Breakdown "<<std::endl;
std::cout << GridLogMessage << "\tElapsed " << SolverTimer.Elapsed() <<std::endl;
std::cout << GridLogMessage << "\tMatrix " << MatrixTimer.Elapsed() <<std::endl;
std::cout << GridLogMessage << "\tInnerProd " << sliceInnerTimer.Elapsed() <<std::endl;
std::cout << GridLogMessage << "\tMaddMatrix " << sliceMaddTimer.Elapsed() <<std::endl;
std::cout << GridLogMessage << "\tThinQRfact " << QRTimer.Elapsed() <<std::endl;
IterationsToComplete = k;
return;
}
}
std::cout << GridLogMessage << "BlockConjugateGradient(rQ) did NOT converge" << std::endl;
if (ErrorOnNoConverge) assert(0);
IterationsToComplete = k;
}
//////////////////////////////////////////////////////////////////////////
// Block conjugate gradient; Original O'Leary Dimension zero should be the block direction
//////////////////////////////////////////////////////////////////////////
void BlockCGsolve(LinearOperatorBase<Field> &Linop, const Field &Src, Field &Psi)
{
int Orthog = blockDim; // First dimension is block dim; this is an assumption
Nblock = Src._grid->_fdimensions[Orthog];
std::cout<<GridLogMessage<<" Block Conjugate Gradient : Orthog "<<Orthog<<" Nblock "<<Nblock<<std::endl;
@ -162,8 +412,9 @@ void operator()(LinearOperatorBase<Field> &Linop, const Field &Src, Field &Psi)
*********************
*/
RealD max_resid=0;
RealD rr;
for(int b=0;b<Nblock;b++){
RealD rr = real(m_rr(b,b))/ssq[b];
rr = real(m_rr(b,b))/ssq[b];
if ( rr > max_resid ) max_resid = rr;
}
@ -173,13 +424,14 @@ void operator()(LinearOperatorBase<Field> &Linop, const Field &Src, Field &Psi)
std::cout << GridLogMessage<<"BlockCG converged in "<<k<<" iterations"<<std::endl;
for(int b=0;b<Nblock;b++){
std::cout << GridLogMessage<< "\t\tblock "<<b<<" resid "<< std::sqrt(real(m_rr(b,b))/ssq[b])<<std::endl;
std::cout << GridLogMessage<< "\t\tblock "<<b<<" computed resid "
<< std::sqrt(real(m_rr(b,b))/ssq[b])<<std::endl;
}
std::cout << GridLogMessage<<"\tMax residual is "<<std::sqrt(max_resid)<<std::endl;
Linop.HermOp(Psi, AP);
AP = AP-Src;
std::cout << GridLogMessage <<"\tTrue residual is " << std::sqrt(norm2(AP)/norm2(Src)) <<std::endl;
std::cout << GridLogMessage <<"\t True residual is " << std::sqrt(norm2(AP)/norm2(Src)) <<std::endl;
std::cout << GridLogMessage << "Time Breakdown "<<std::endl;
std::cout << GridLogMessage << "\tElapsed " << SolverTimer.Elapsed() <<std::endl;
@ -197,35 +449,13 @@ void operator()(LinearOperatorBase<Field> &Linop, const Field &Src, Field &Psi)
if (ErrorOnNoConverge) assert(0);
IterationsToComplete = k;
}
};
//////////////////////////////////////////////////////////////////////////
// multiRHS conjugate gradient. Dimension zero should be the block direction
// Use this for spread out across nodes
//////////////////////////////////////////////////////////////////////////
template <class Field>
class MultiRHSConjugateGradient : public OperatorFunction<Field> {
public:
typedef typename Field::scalar_type scomplex;
const int blockDim = 0;
int Nblock;
bool ErrorOnNoConverge; // throw an assert when the CG fails to converge.
// Defaults true.
RealD Tolerance;
Integer MaxIterations;
Integer IterationsToComplete; //Number of iterations the CG took to finish. Filled in upon completion
MultiRHSConjugateGradient(RealD tol, Integer maxit, bool err_on_no_conv = true)
: Tolerance(tol),
MaxIterations(maxit),
ErrorOnNoConverge(err_on_no_conv){};
void operator()(LinearOperatorBase<Field> &Linop, const Field &Src, Field &Psi)
void CGmultiRHSsolve(LinearOperatorBase<Field> &Linop, const Field &Src, Field &Psi)
{
int Orthog = 0; // First dimension is block dim
int Orthog = blockDim; // First dimension is block dim
Nblock = Src._grid->_fdimensions[Orthog];
std::cout<<GridLogMessage<<"MultiRHS Conjugate Gradient : Orthog "<<Orthog<<" Nblock "<<Nblock<<std::endl;
@ -285,12 +515,10 @@ void operator()(LinearOperatorBase<Field> &Linop, const Field &Src, Field &Psi)
MatrixTimer.Stop();
// Alpha
// sliceInnerProductVectorTest(v_pAp_test,P,AP,Orthog);
sliceInnerTimer.Start();
sliceInnerProductVector(v_pAp,P,AP,Orthog);
sliceInnerTimer.Stop();
for(int b=0;b<Nblock;b++){
// std::cout << " "<< v_pAp[b]<<" "<< v_pAp_test[b]<<std::endl;
v_alpha[b] = v_rr[b]/real(v_pAp[b]);
}
@ -332,7 +560,7 @@ void operator()(LinearOperatorBase<Field> &Linop, const Field &Src, Field &Psi)
std::cout << GridLogMessage<<"MultiRHS solver converged in " <<k<<" iterations"<<std::endl;
for(int b=0;b<Nblock;b++){
std::cout << GridLogMessage<< "\t\tBlock "<<b<<" resid "<< std::sqrt(v_rr[b]/ssq[b])<<std::endl;
std::cout << GridLogMessage<< "\t\tBlock "<<b<<" computed resid "<< std::sqrt(v_rr[b]/ssq[b])<<std::endl;
}
std::cout << GridLogMessage<<"\tMax residual is "<<std::sqrt(max_resid)<<std::endl;
@ -358,9 +586,8 @@ void operator()(LinearOperatorBase<Field> &Linop, const Field &Src, Field &Psi)
if (ErrorOnNoConverge) assert(0);
IterationsToComplete = k;
}
};
}
#endif

81
lib/algorithms/iterative/EigenSort.h
View File

@ -1,81 +0,0 @@
/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: ./lib/algorithms/iterative/EigenSort.h
Copyright (C) 2015
Author: Peter Boyle <paboyle@ph.ed.ac.uk>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#ifndef GRID_EIGENSORT_H
#define GRID_EIGENSORT_H
namespace Grid {
/////////////////////////////////////////////////////////////
// Eigen sorter to begin with
/////////////////////////////////////////////////////////////
template<class Field>
class SortEigen {
private:
//hacking for testing for now
private:
static bool less_lmd(RealD left,RealD right){
return left > right;
}
static bool less_pair(std::pair<RealD,Field const*>& left,
std::pair<RealD,Field const*>& right){
return left.first > (right.first);
}
public:
void push(DenseVector<RealD>& lmd,
DenseVector<Field>& evec,int N) {
DenseVector<Field> cpy(lmd.size(),evec[0]._grid);
for(int i=0;i<lmd.size();i++) cpy[i] = evec[i];
DenseVector<std::pair<RealD, Field const*> > emod(lmd.size());
for(int i=0;i<lmd.size();++i)
emod[i] = std::pair<RealD,Field const*>(lmd[i],&cpy[i]);
partial_sort(emod.begin(),emod.begin()+N,emod.end(),less_pair);
typename DenseVector<std::pair<RealD, Field const*> >::iterator it = emod.begin();
for(int i=0;i<N;++i){
lmd[i]=it->first;
evec[i]=*(it->second);
++it;
}
}
void push(DenseVector<RealD>& lmd,int N) {
std::partial_sort(lmd.begin(),lmd.begin()+N,lmd.end(),less_lmd);
}
bool saturated(RealD lmd, RealD thrs) {
return fabs(lmd) > fabs(thrs);
}
};
}
#endif

3
lib/algorithms/iterative/ImplicitlyRestartedLanczos.h → lib/algorithms/iterative/ImplicitlyRestartedLanczosCJ.h
View File

@ -57,9 +57,10 @@ namespace Grid {
// Implicitly restarted lanczos
/////////////////////////////////////////////////////////////
// creating a seaprate instance to avoid conflicts for the time being
template<class Field>
class ImplicitlyRestartedLanczos {
class ImplicitlyRestartedLanczosCJ {
const RealD small = 1.0e-16;
public:

16
lib/allocator/AlignedAllocator.h
View File

@ -98,7 +98,14 @@ public:
#else
if ( ptr == (_Tp *) NULL ) ptr = (_Tp *) memalign(128,bytes);
#endif
// First touch optimise in threaded loop
uint8_t *cp = (uint8_t *)ptr;
#ifdef GRID_OMP
#pragma omp parallel for
#endif
for(size_type n=0;n<bytes;n+=4096){
cp[n]=0;
}
return ptr;
}
@ -186,6 +193,13 @@ public:
#else
_Tp * ptr = (_Tp *) memalign(128,__n*sizeof(_Tp));
#endif
size_type bytes = __n*sizeof(_Tp);
uint8_t *cp = (uint8_t *)ptr;
// One touch per 4k page, static OMP loop to catch same loop order
#pragma omp parallel for schedule(static)
for(size_type n=0;n<bytes;n+=4096){
cp[n]=0;
}
return ptr;
}
void deallocate(pointer __p, size_type) {

9
lib/cartesian/Cartesian_base.h
View File

@ -50,7 +50,6 @@ public:
GridBase(const std::vector<int> & processor_grid) : CartesianCommunicator(processor_grid) {};
// Physics Grid information.
std::vector<int> _simd_layout;// Which dimensions get relayed out over simd lanes.
std::vector<int> _fdimensions;// (full) Global dimensions of array prior to cb removal
@ -63,13 +62,12 @@ public:
int _isites;
int _fsites; // _isites*_osites = product(dimensions).
int _gsites;
std::vector<int> _slice_block; // subslice information
std::vector<int> _slice_block;// subslice information
std::vector<int> _slice_stride;
std::vector<int> _slice_nblock;
// Might need these at some point
// std::vector<int> _lstart; // local start of array in gcoors. _processor_coor[d]*_ldimensions[d]
// std::vector<int> _lend; // local end of array in gcoors _processor_coor[d]*_ldimensions[d]+_ldimensions_[d]-1
std::vector<int> _lstart; // local start of array in gcoors _processor_coor[d]*_ldimensions[d]
std::vector<int> _lend ; // local end of array in gcoors _processor_coor[d]*_ldimensions[d]+_ldimensions_[d]-1
public:
@ -176,6 +174,7 @@ public:
inline int gSites(void) const { return _isites*_osites*_Nprocessors; };
inline int Nd (void) const { return _ndimension;};
inline const std::vector<int> LocalStarts(void) { return _lstart; };
inline const std::vector<int> &FullDimensions(void) { return _fdimensions;};
inline const std::vector<int> &GlobalDimensions(void) { return _gdimensions;};
inline const std::vector<int> &LocalDimensions(void) { return _ldimensions;};

8
lib/cartesian/Cartesian_full.h
View File

@ -76,6 +76,8 @@ public:
_ldimensions.resize(_ndimension);
_rdimensions.resize(_ndimension);
_simd_layout.resize(_ndimension);
_lstart.resize(_ndimension);
_lend.resize(_ndimension);
_ostride.resize(_ndimension);
_istride.resize(_ndimension);
@ -94,8 +96,10 @@ public:
// Use a reduced simd grid
_ldimensions[d]= _gdimensions[d]/_processors[d]; //local dimensions
_rdimensions[d]= _ldimensions[d]/_simd_layout[d]; //overdecomposition
_osites *= _rdimensions[d];
_isites *= _simd_layout[d];
_lstart[d] = _processor_coor[d]*_ldimensions[d];
_lend[d] = _processor_coor[d]*_ldimensions[d]+_ldimensions[d]-1;
_osites *= _rdimensions[d];
_isites *= _simd_layout[d];
// Addressing support
if ( d==0 ) {

4
lib/cartesian/Cartesian_red_black.h
View File

@ -151,6 +151,8 @@ public:
_ldimensions.resize(_ndimension);
_rdimensions.resize(_ndimension);
_simd_layout.resize(_ndimension);
_lstart.resize(_ndimension);
_lend.resize(_ndimension);
_ostride.resize(_ndimension);
_istride.resize(_ndimension);
@ -169,6 +171,8 @@ public:
_gdimensions[d] = _gdimensions[d]/2; // Remove a checkerboard
}
_ldimensions[d] = _gdimensions[d]/_processors[d];
_lstart[d] = _processor_coor[d]*_ldimensions[d];
_lend[d] = _processor_coor[d]*_ldimensions[d]+_ldimensions[d]-1;
// Use a reduced simd grid
_simd_layout[d] = simd_layout[d];

2
lib/communicator/Communicator_base.cc
View File

@ -60,6 +60,7 @@ void CartesianCommunicator::ShmBufferFreeAll(void) {
/////////////////////////////////
// Grid information queries
/////////////////////////////////
int CartesianCommunicator::Dimensions(void) { return _ndimension; };
int CartesianCommunicator::IsBoss(void) { return _processor==0; };
int CartesianCommunicator::BossRank(void) { return 0; };
int CartesianCommunicator::ThisRank(void) { return _processor; };
@ -91,6 +92,7 @@ void CartesianCommunicator::GlobalSumVector(ComplexD *c,int N)
#if !defined( GRID_COMMS_MPI3) && !defined (GRID_COMMS_MPI3L)
int CartesianCommunicator::NodeCount(void) { return ProcessorCount();};
int CartesianCommunicator::RankCount(void) { return ProcessorCount();};
double CartesianCommunicator::StencilSendToRecvFromBegin(std::vector<CommsRequest_t> &list,
void *xmit,

4
lib/communicator/Communicator_base.h
View File

@ -148,6 +148,7 @@ class CartesianCommunicator {
int RankFromProcessorCoor(std::vector<int> &coor);
void ProcessorCoorFromRank(int rank,std::vector<int> &coor);
int Dimensions(void) ;
int IsBoss(void) ;
int BossRank(void) ;
int ThisRank(void) ;
@ -155,6 +156,7 @@ class CartesianCommunicator {
const std::vector<int> & ProcessorGrid(void) ;
int ProcessorCount(void) ;
int NodeCount(void) ;
int RankCount(void) ;
////////////////////////////////////////////////////////////////////////////////
// very VERY rarely (Log, serial RNG) we need world without a grid
@ -175,6 +177,8 @@ class CartesianCommunicator {
void GlobalSumVector(ComplexF *c,int N);
void GlobalSum(ComplexD &c);
void GlobalSumVector(ComplexD *c,int N);
void GlobalXOR(uint32_t &);
void GlobalXOR(uint64_t &);
template<class obj> void GlobalSum(obj &o){
typedef typename obj::scalar_type scalar_type;

8
lib/communicator/Communicator_mpi.cc
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@ -83,6 +83,14 @@ void CartesianCommunicator::GlobalSum(uint64_t &u){
int ierr=MPI_Allreduce(MPI_IN_PLACE,&u,1,MPI_UINT64_T,MPI_SUM,communicator);
assert(ierr==0);
}
void CartesianCommunicator::GlobalXOR(uint32_t &u){
int ierr=MPI_Allreduce(MPI_IN_PLACE,&u,1,MPI_UINT32_T,MPI_BXOR,communicator);
assert(ierr==0);
}
void CartesianCommunicator::GlobalXOR(uint64_t &u){
int ierr=MPI_Allreduce(MPI_IN_PLACE,&u,1,MPI_UINT64_T,MPI_BXOR,communicator);
assert(ierr==0);
}
void CartesianCommunicator::GlobalSum(float &f){
int ierr=MPI_Allreduce(MPI_IN_PLACE,&f,1,MPI_FLOAT,MPI_SUM,communicator);
assert(ierr==0);

33
lib/communicator/Communicator_mpi3.cc
View File

@ -37,7 +37,10 @@ Author: Peter Boyle <paboyle@ph.ed.ac.uk>
#include <sys/ipc.h>
#include <sys/shm.h>
#include <sys/mman.h>
//#include <zlib.h>
#include <zlib.h>
#ifdef HAVE_NUMAIF_H
#include <numaif.h>
#endif
#ifndef SHM_HUGETLB
#define SHM_HUGETLB 04000
#endif
@ -65,6 +68,7 @@ std::vector<int> CartesianCommunicator::MyGroup;
std::vector<void *> CartesianCommunicator::ShmCommBufs;
int CartesianCommunicator::NodeCount(void) { return GroupSize;};
int CartesianCommunicator::RankCount(void) { return WorldSize;};
#undef FORCE_COMMS
@ -213,6 +217,25 @@ void CartesianCommunicator::Init(int *argc, char ***argv) {
void * ptr = mmap(NULL,size, PROT_READ | PROT_WRITE, MAP_SHARED, fd, 0);
if ( ptr == MAP_FAILED ) { perror("failed mmap"); assert(0); }
assert(((uint64_t)ptr&0x3F)==0);
// Try to force numa domain on the shm segment if we have numaif.h
#ifdef HAVE_NUMAIF_H
int status;
int flags=MPOL_MF_MOVE;
#ifdef KNL
int nodes=1; // numa domain == MCDRAM
// Find out if in SNC2,SNC4 mode ?
#else
int nodes=r; // numa domain == MPI ID
#endif
unsigned long count=1;
for(uint64_t page=0;page<size;page+=4096){
void *pages = (void *) ( page + (uint64_t)ptr );
uint64_t *cow_it = (uint64_t *)pages; *cow_it = 1;
ierr= move_pages(0,count, &pages,&nodes,&status,flags);
if (ierr && (page==0)) perror("numa relocate command failed");
}
#endif
ShmCommBufs[r] =ptr;
}
@ -509,6 +532,14 @@ void CartesianCommunicator::GlobalSum(uint64_t &u){
int ierr=MPI_Allreduce(MPI_IN_PLACE,&u,1,MPI_UINT64_T,MPI_SUM,communicator);
assert(ierr==0);
}
void CartesianCommunicator::GlobalXOR(uint32_t &u){
int ierr=MPI_Allreduce(MPI_IN_PLACE,&u,1,MPI_UINT32_T,MPI_BXOR,communicator);
assert(ierr==0);
}
void CartesianCommunicator::GlobalXOR(uint64_t &u){
int ierr=MPI_Allreduce(MPI_IN_PLACE,&u,1,MPI_UINT64_T,MPI_BXOR,communicator);
assert(ierr==0);
}
void CartesianCommunicator::GlobalSum(float &f){
int ierr=MPI_Allreduce(MPI_IN_PLACE,&f,1,MPI_FLOAT,MPI_SUM,communicator);
assert(ierr==0);

2
lib/communicator/Communicator_none.cc
View File

@ -59,6 +59,8 @@ void CartesianCommunicator::GlobalSum(double &){}
void CartesianCommunicator::GlobalSum(uint32_t &){}
void CartesianCommunicator::GlobalSum(uint64_t &){}
void CartesianCommunicator::GlobalSumVector(double *,int N){}
void CartesianCommunicator::GlobalXOR(uint32_t &){}
void CartesianCommunicator::GlobalXOR(uint64_t &){}
void CartesianCommunicator::SendRecvPacket(void *xmit,
void *recv,

225
lib/lattice/Lattice_reduction.h
View File

@ -1,4 +1,4 @@
/*************************************************************************************
/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: ./lib/lattice/Lattice_reduction.h
Copyright (C) 2015
@ -369,71 +369,6 @@ static void sliceMaddVector(Lattice<vobj> &R,std::vector<RealD> &a,const Lattice
}
};
/*
template<class vobj>
static void sliceMaddVectorSlow (Lattice<vobj> &R,std::vector<RealD> &a,const Lattice<vobj> &X,const Lattice<vobj> &Y,
int Orthog,RealD scale=1.0)
{
// FIXME: Implementation is slow
// Best base the linear combination by constructing a
// set of vectors of size grid->_rdimensions[Orthog].
typedef typename vobj::scalar_object sobj;
typedef typename vobj::scalar_type scalar_type;
typedef typename vobj::vector_type vector_type;
int Nblock = X._grid->GlobalDimensions()[Orthog];
GridBase *FullGrid = X._grid;
GridBase *SliceGrid = makeSubSliceGrid(FullGrid,Orthog);
Lattice<vobj> Xslice(SliceGrid);
Lattice<vobj> Rslice(SliceGrid);
// If we based this on Cshift it would work for spread out
// but it would be even slower
for(int i=0;i<Nblock;i++){
ExtractSlice(Rslice,Y,i,Orthog);
ExtractSlice(Xslice,X,i,Orthog);
Rslice = Rslice + Xslice*(scale*a[i]);
InsertSlice(Rslice,R,i,Orthog);
}
};
template<class vobj>
static void sliceInnerProductVectorSlow( std::vector<ComplexD> & vec, const Lattice<vobj> &lhs,const Lattice<vobj> &rhs,int Orthog)
{
// FIXME: Implementation is slow
// Look at localInnerProduct implementation,
// and do inside a site loop with block strided iterators
typedef typename vobj::scalar_object sobj;
typedef typename vobj::scalar_type scalar_type;
typedef typename vobj::vector_type vector_type;
typedef typename vobj::tensor_reduced scalar;
typedef typename scalar::scalar_object scomplex;
int Nblock = lhs._grid->GlobalDimensions()[Orthog];
vec.resize(Nblock);
std::vector<scomplex> sip(Nblock);
Lattice<scalar> IP(lhs._grid);
IP=localInnerProduct(lhs,rhs);
sliceSum(IP,sip,Orthog);
for(int ss=0;ss<Nblock;ss++){
vec[ss] = TensorRemove(sip[ss]);
}
}
*/
//////////////////////////////////////////////////////////////////////////////////////////
// FIXME: Implementation is slow
// If we based this on Cshift it would work for spread out
// but it would be even slower
//
// Repeated extract slice is inefficient
//
// Best base the linear combination by constructing a
// set of vectors of size grid->_rdimensions[Orthog].
//////////////////////////////////////////////////////////////////////////////////////////
inline GridBase *makeSubSliceGrid(const GridBase *BlockSolverGrid,int Orthog)
{
int NN = BlockSolverGrid->_ndimension;
@ -453,7 +388,6 @@ inline GridBase *makeSubSliceGrid(const GridBase *BlockSolverGrid,int Or
return (GridBase *)new GridCartesian(latt_phys,simd_phys,mpi_phys);
}
template<class vobj>
static void sliceMaddMatrix (Lattice<vobj> &R,Eigen::MatrixXcd &aa,const Lattice<vobj> &X,const Lattice<vobj> &Y,int Orthog,RealD scale=1.0)
{
@ -462,28 +396,103 @@ static void sliceMaddMatrix (Lattice<vobj> &R,Eigen::MatrixXcd &aa,const Lattice
typedef typename vobj::vector_type vector_type;
int Nblock = X._grid->GlobalDimensions()[Orthog];
GridBase *FullGrid = X._grid;
GridBase *SliceGrid = makeSubSliceGrid(FullGrid,Orthog);
Lattice<vobj> Xslice(SliceGrid);
Lattice<vobj> Rslice(SliceGrid);
for(int i=0;i<Nblock;i++){
ExtractSlice(Rslice,Y,i,Orthog);
for(int j=0;j<Nblock;j++){
ExtractSlice(Xslice,X,j,Orthog);
Rslice = Rslice + Xslice*(scale*aa(j,i));
}
InsertSlice(Rslice,R,i,Orthog);
assert( FullGrid->_simd_layout[Orthog]==1);
int nh = FullGrid->_ndimension;
int nl = SliceGrid->_ndimension;
//FIXME package in a convenient iterator
//Should loop over a plane orthogonal to direction "Orthog"
int stride=FullGrid->_slice_stride[Orthog];
int block =FullGrid->_slice_block [Orthog];
int nblock=FullGrid->_slice_nblock[Orthog];
int ostride=FullGrid->_ostride[Orthog];
#pragma omp parallel
{
std::vector<vobj> s_x(Nblock);
#pragma omp for collapse(2)
for(int n=0;n<nblock;n++){
for(int b=0;b<block;b++){
int o = n*stride + b;
for(int i=0;i<Nblock;i++){
s_x[i] = X[o+i*ostride];
}
vobj dot;
for(int i=0;i<Nblock;i++){
dot = Y[o+i*ostride];
for(int j=0;j<Nblock;j++){
dot = dot + s_x[j]*(scale*aa(j,i));
}
R[o+i*ostride]=dot;
}
}}
}
};
template<class vobj>
static void sliceMulMatrix (Lattice<vobj> &R,Eigen::MatrixXcd &aa,const Lattice<vobj> &X,int Orthog,RealD scale=1.0)
{
typedef typename vobj::scalar_object sobj;
typedef typename vobj::scalar_type scalar_type;
typedef typename vobj::vector_type vector_type;
int Nblock = X._grid->GlobalDimensions()[Orthog];
GridBase *FullGrid = X._grid;
GridBase *SliceGrid = makeSubSliceGrid(FullGrid,Orthog);
Lattice<vobj> Xslice(SliceGrid);
Lattice<vobj> Rslice(SliceGrid);
assert( FullGrid->_simd_layout[Orthog]==1);
int nh = FullGrid->_ndimension;
int nl = SliceGrid->_ndimension;
//FIXME package in a convenient iterator
//Should loop over a plane orthogonal to direction "Orthog"
int stride=FullGrid->_slice_stride[Orthog];
int block =FullGrid->_slice_block [Orthog];
int nblock=FullGrid->_slice_nblock[Orthog];
int ostride=FullGrid->_ostride[Orthog];
#pragma omp parallel
{
std::vector<vobj> s_x(Nblock);
#pragma omp for collapse(2)
for(int n=0;n<nblock;n++){
for(int b=0;b<block;b++){
int o = n*stride + b;
for(int i=0;i<Nblock;i++){
s_x[i] = X[o+i*ostride];
}
vobj dot;
for(int i=0;i<Nblock;i++){
dot = s_x[0]*(scale*aa(0,i));
for(int j=1;j<Nblock;j++){
dot = dot + s_x[j]*(scale*aa(j,i));
}
R[o+i*ostride]=dot;
}
}}
}
};
template<class vobj>
static void sliceInnerProductMatrix( Eigen::MatrixXcd &mat, const Lattice<vobj> &lhs,const Lattice<vobj> &rhs,int Orthog)
{
// FIXME: Implementation is slow
// Not sure of best solution.. think about it
typedef typename vobj::scalar_object sobj;
typedef typename vobj::scalar_type scalar_type;
typedef typename vobj::vector_type vector_type;
@ -497,22 +506,50 @@ static void sliceInnerProductMatrix( Eigen::MatrixXcd &mat, const Lattice<vobj>
Lattice<vobj> Rslice(SliceGrid);
mat = Eigen::MatrixXcd::Zero(Nblock,Nblock);
for(int i=0;i<Nblock;i++){
ExtractSlice(Lslice,lhs,i,Orthog);
for(int j=0;j<Nblock;j++){
ExtractSlice(Rslice,rhs,j,Orthog);
mat(i,j) = innerProduct(Lslice,Rslice);
}
assert( FullGrid->_simd_layout[Orthog]==1);
int nh = FullGrid->_ndimension;
int nl = SliceGrid->_ndimension;
//FIXME package in a convenient iterator
//Should loop over a plane orthogonal to direction "Orthog"
int stride=FullGrid->_slice_stride[Orthog];
int block =FullGrid->_slice_block [Orthog];
int nblock=FullGrid->_slice_nblock[Orthog];
int ostride=FullGrid->_ostride[Orthog];
typedef typename vobj::vector_typeD vector_typeD;
#pragma omp parallel
{
std::vector<vobj> Left(Nblock);
std::vector<vobj> Right(Nblock);
Eigen::MatrixXcd mat_thread = Eigen::MatrixXcd::Zero(Nblock,Nblock);
#pragma omp for collapse(2)
for(int n=0;n<nblock;n++){
for(int b=0;b<block;b++){
int o = n*stride + b;
for(int i=0;i<Nblock;i++){
Left [i] = lhs[o+i*ostride];
Right[i] = rhs[o+i*ostride];
}
for(int i=0;i<Nblock;i++){
for(int j=0;j<Nblock;j++){
auto tmp = innerProduct(Left[i],Right[j]);
// vector_typeD rtmp = TensorRemove(tmp);
auto rtmp = TensorRemove(tmp);
mat_thread(i,j) += Reduce(rtmp);
}}
}}
#pragma omp critical
{
mat += mat_thread;
}
}
#undef FORCE_DIAG
#ifdef FORCE_DIAG
for(int i=0;i<Nblock;i++){
for(int j=0;j<Nblock;j++){
if ( i != j ) mat(i,j)=0.0;
}
}
#endif
return;
}

55
lib/lattice/Lattice_transfer.h
View File

@ -551,7 +551,10 @@ void Replicate(Lattice<vobj> &coarse,Lattice<vobj> & fine)
//Copy SIMD-vectorized lattice to array of scalar objects in lexicographic order
template<typename vobj, typename sobj>
typename std::enable_if<isSIMDvectorized<vobj>::value && !isSIMDvectorized<sobj>::value, void>::type unvectorizeToLexOrdArray(std::vector<sobj> &out, const Lattice<vobj> &in){
typename std::enable_if<isSIMDvectorized<vobj>::value && !isSIMDvectorized<sobj>::value, void>::type
unvectorizeToLexOrdArray(std::vector<sobj> &out, const Lattice<vobj> &in)
{
typedef typename vobj::vector_type vtype;
GridBase* in_grid = in._grid;
@ -590,6 +593,54 @@ typename std::enable_if<isSIMDvectorized<vobj>::value && !isSIMDvectorized<sobj>
extract1(in_vobj, out_ptrs, 0);
}
}
//Copy SIMD-vectorized lattice to array of scalar objects in lexicographic order
template<typename vobj, typename sobj>
typename std::enable_if<isSIMDvectorized<vobj>::value
&& !isSIMDvectorized<sobj>::value, void>::type
vectorizeFromLexOrdArray( std::vector<sobj> &in, Lattice<vobj> &out)
{
typedef typename vobj::vector_type vtype;
GridBase* grid = out._grid;
assert(in.size()==grid->lSites());
int ndim = grid->Nd();
int nsimd = vtype::Nsimd();
std::vector<std::vector<int> > icoor(nsimd);
for(int lane=0; lane < nsimd; lane++){
icoor[lane].resize(ndim);
grid->iCoorFromIindex(icoor[lane],lane);
}
parallel_for(uint64_t oidx = 0; oidx < grid->oSites(); oidx++){ //loop over outer index
//Assemble vector of pointers to output elements
std::vector<sobj*> ptrs(nsimd);
std::vector<int> ocoor(ndim);
grid->oCoorFromOindex(ocoor, oidx);
std::vector<int> lcoor(grid->Nd());
for(int lane=0; lane < nsimd; lane++){
for(int mu=0;mu<ndim;mu++){
lcoor[mu] = ocoor[mu] + grid->_rdimensions[mu]*icoor[lane][mu];
}
int lex;
Lexicographic::IndexFromCoor(lcoor, lex, grid->_ldimensions);
ptrs[lane] = &in[lex];
}
//pack from those ptrs
vobj vecobj;
merge1(vecobj, ptrs, 0);
out._odata[oidx] = vecobj;
}
}
//Convert a Lattice from one precision to another
template<class VobjOut, class VobjIn>
@ -615,7 +666,7 @@ void precisionChange(Lattice<VobjOut> &out, const Lattice<VobjIn> &in){
std::vector<SobjOut> in_slex_conv(in_grid->lSites());
unvectorizeToLexOrdArray(in_slex_conv, in);
parallel_for(int out_oidx=0;out_oidx<out_grid->oSites();out_oidx++){
parallel_for(uint64_t out_oidx=0;out_oidx<out_grid->oSites();out_oidx++){
std::vector<int> out_ocoor(ndim);
out_grid->oCoorFromOindex(out_ocoor, out_oidx);

1137
lib/parallelIO/BinaryIO.h
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File diff suppressed because it is too large Load Diff

787
lib/parallelIO/IldgIO.h
View File

@ -27,6 +27,7 @@ directory
#ifndef GRID_ILDG_IO_H
#define GRID_ILDG_IO_H
#ifdef HAVE_LIME
#include <algorithm>
#include <fstream>
#include <iomanip>
@ -37,213 +38,677 @@ directory
#include <sys/utsname.h>
#include <unistd.h>
#ifdef HAVE_LIME
extern "C" { // for linkage
//C-Lime is a must have for this functionality
extern "C" {
#include "lime.h"
}
namespace Grid {
namespace QCD {
inline void ILDGGrid(GridBase *grid, ILDGField &header) {
assert(grid->_ndimension == 4); // emit error if not
header.dimension.resize(4);
header.boundary.resize(4);
for (int d = 0; d < 4; d++) {
header.dimension[d] = grid->_fdimensions[d];
// Read boundary conditions from ... ?
header.boundary[d] = std::string("periodic");
}
}
/////////////////////////////////
// Encode word types as strings
/////////////////////////////////
template<class word> inline std::string ScidacWordMnemonic(void){ return std::string("unknown"); }
template<> inline std::string ScidacWordMnemonic<double> (void){ return std::string("D"); }
template<> inline std::string ScidacWordMnemonic<float> (void){ return std::string("F"); }
template<> inline std::string ScidacWordMnemonic< int32_t>(void){ return std::string("I32_t"); }
template<> inline std::string ScidacWordMnemonic<uint32_t>(void){ return std::string("U32_t"); }
template<> inline std::string ScidacWordMnemonic< int64_t>(void){ return std::string("I64_t"); }
template<> inline std::string ScidacWordMnemonic<uint64_t>(void){ return std::string("U64_t"); }
inline void ILDGChecksum(uint32_t *buf, uint32_t buf_size_bytes,
uint32_t &csum) {
BinaryIO::Uint32Checksum(buf, buf_size_bytes, csum);
}
/////////////////////////////////////////
// Encode a generic tensor as a string
/////////////////////////////////////////
template<class vobj> std::string ScidacRecordTypeString(int &colors, int &spins, int & typesize,int &datacount) {
//////////////////////////////////////////////////////////////////////
// Utilities ; these are QCD aware
//////////////////////////////////////////////////////////////////////
template <class GaugeField>
inline void ILDGStatistics(GaugeField &data, ILDGField &header) {
// How to convert data precision etc...
header.link_trace = Grid::QCD::WilsonLoops<PeriodicGimplR>::linkTrace(data);
header.plaquette = Grid::QCD::WilsonLoops<PeriodicGimplR>::avgPlaquette(data);
// header.polyakov =
}
typedef typename getPrecision<vobj>::real_scalar_type stype;
// Forcing QCD here
template <class fobj, class sobj>
struct ILDGMunger {
void operator()(fobj &in, sobj &out, uint32_t &csum) {
for (int mu = 0; mu < 4; mu++) {
for (int i = 0; i < 3; i++) {
for (int j = 0; j < 3; j++) {
out(mu)()(i, j) = in(mu)()(i, j);
}
}
}
ILDGChecksum((uint32_t *)&in, sizeof(in), csum);
};
};
int _ColourN = indexRank<ColourIndex,vobj>();
int _ColourScalar = isScalar<ColourIndex,vobj>();
int _ColourVector = isVector<ColourIndex,vobj>();
int _ColourMatrix = isMatrix<ColourIndex,vobj>();
template <class fobj, class sobj>
struct ILDGUnmunger {
void operator()(sobj &in, fobj &out, uint32_t &csum) {
for (int mu = 0; mu < 4; mu++) {
for (int i = 0; i < 3; i++) {
for (int j = 0; j < 3; j++) {
out(mu)()(i, j) = in(mu)()(i, j);
}
}
}
ILDGChecksum((uint32_t *)&out, sizeof(out), csum);
};
};
int _SpinN = indexRank<SpinIndex,vobj>();
int _SpinScalar = isScalar<SpinIndex,vobj>();
int _SpinVector = isVector<SpinIndex,vobj>();
int _SpinMatrix = isMatrix<SpinIndex,vobj>();
////////////////////////////////////////////////////////////////////////////////
// Write and read from fstream; compute header offset for payload
////////////////////////////////////////////////////////////////////////////////
enum ILDGstate {ILDGread, ILDGwrite};
int _LorentzN = indexRank<LorentzIndex,vobj>();
int _LorentzScalar = isScalar<LorentzIndex,vobj>();
int _LorentzVector = isVector<LorentzIndex,vobj>();
int _LorentzMatrix = isMatrix<LorentzIndex,vobj>();
class ILDGIO : public BinaryIO {
FILE *File;
LimeWriter *LimeW;
LimeRecordHeader *LimeHeader;
LimeReader *LimeR;
std::string filename;
std::stringstream stream;
stream << "GRID_";
stream << ScidacWordMnemonic<stype>();
// std::cout << " Lorentz N/S/V/M : " << _LorentzN<<" "<<_LorentzScalar<<"/"<<_LorentzVector<<"/"<<_LorentzMatrix<<std::endl;
// std::cout << " Spin N/S/V/M : " << _SpinN <<" "<<_SpinScalar <<"/"<<_SpinVector <<"/"<<_SpinMatrix<<std::endl;
// std::cout << " Colour N/S/V/M : " << _ColourN <<" "<<_ColourScalar <<"/"<<_ColourVector <<"/"<<_ColourMatrix<<std::endl;
if ( _LorentzVector ) stream << "_LorentzVector"<<_LorentzN;
if ( _LorentzMatrix ) stream << "_LorentzMatrix"<<_LorentzN;
if ( _SpinVector ) stream << "_SpinVector"<<_SpinN;
if ( _SpinMatrix ) stream << "_SpinMatrix"<<_SpinN;
if ( _ColourVector ) stream << "_ColourVector"<<_ColourN;
if ( _ColourMatrix ) stream << "_ColourMatrix"<<_ColourN;
if ( _ColourScalar && _LorentzScalar && _SpinScalar ) stream << "_Complex";
typesize = sizeof(typename vobj::scalar_type);
if ( _ColourMatrix ) typesize*= _ColourN*_ColourN;
else typesize*= _ColourN;
if ( _SpinMatrix ) typesize*= _SpinN*_SpinN;
else typesize*= _SpinN;
colors = _ColourN;
spins = _SpinN;
datacount = _LorentzN;
return stream.str();
}
template<class vobj> std::string ScidacRecordTypeString(Lattice<vobj> & lat,int &colors, int &spins, int & typesize,int &datacount) {
return ScidacRecordTypeString<vobj>(colors,spins,typesize,datacount);
};
////////////////////////////////////////////////////////////
// Helper to fill out metadata
////////////////////////////////////////////////////////////
template<class vobj> void ScidacMetaData(Lattice<vobj> & field,
FieldMetaData &header,
scidacRecord & _scidacRecord,
scidacFile & _scidacFile)
{
typedef typename getPrecision<vobj>::real_scalar_type stype;
/////////////////////////////////////
// Pull Grid's metadata
/////////////////////////////////////
PrepareMetaData(field,header);
/////////////////////////////////////
// Scidac Private File structure
/////////////////////////////////////
_scidacFile = scidacFile(field._grid);
/////////////////////////////////////
// Scidac Private Record structure
/////////////////////////////////////
scidacRecord sr;
sr.datatype = ScidacRecordTypeString(field,sr.colors,sr.spins,sr.typesize,sr.datacount);
sr.date = header.creation_date;
sr.precision = ScidacWordMnemonic<stype>();
sr.recordtype = GRID_IO_FIELD;
_scidacRecord = sr;
std::cout << GridLogMessage << "Build SciDAC datatype " <<sr.datatype<<std::endl;
}
///////////////////////////////////////////////////////
// Scidac checksum
///////////////////////////////////////////////////////
static int scidacChecksumVerify(scidacChecksum &scidacChecksum_,uint32_t scidac_csuma,uint32_t scidac_csumb)
{
uint32_t scidac_checksuma = stoull(scidacChecksum_.suma,0,16);
uint32_t scidac_checksumb = stoull(scidacChecksum_.sumb,0,16);
if ( scidac_csuma !=scidac_checksuma) return 0;
if ( scidac_csumb !=scidac_checksumb) return 0;
return 1;
}
////////////////////////////////////////////////////////////////////////////////////
// Lime, ILDG and Scidac I/O classes
////////////////////////////////////////////////////////////////////////////////////
class GridLimeReader : public BinaryIO {
public:
ILDGIO(std::string file, ILDGstate RW) {
filename = file;
if (RW == ILDGwrite){
File = fopen(file.c_str(), "w");
// check if opened correctly
///////////////////////////////////////////////////
// FIXME: format for RNG? Now just binary out instead
///////////////////////////////////////////////////
LimeW = limeCreateWriter(File);
} else {
File = fopen(file.c_str(), "r");
// check if opened correctly
FILE *File;
LimeReader *LimeR;
std::string filename;
LimeR = limeCreateReader(File);
/////////////////////////////////////////////
// Open the file
/////////////////////////////////////////////
void open(std::string &_filename)
{
filename= _filename;
File = fopen(filename.c_str(), "r");
LimeR = limeCreateReader(File);
}
/////////////////////////////////////////////
// Close the file
/////////////////////////////////////////////
void close(void){
fclose(File);
// limeDestroyReader(LimeR);
}
////////////////////////////////////////////
// Read a generic lattice field and verify checksum
////////////////////////////////////////////
template<class vobj>
void readLimeLatticeBinaryObject(Lattice<vobj> &field,std::string record_name)
{
typedef typename vobj::scalar_object sobj;
scidacChecksum scidacChecksum_;
uint32_t nersc_csum,scidac_csuma,scidac_csumb;
std::string format = getFormatString<vobj>();
while ( limeReaderNextRecord(LimeR) == LIME_SUCCESS ) {
std::cout << GridLogMessage << limeReaderType(LimeR) <<std::endl;
if ( strncmp(limeReaderType(LimeR), record_name.c_str(),strlen(record_name.c_str()) ) ) {
off_t offset= ftell(File);
BinarySimpleMunger<sobj,sobj> munge;
BinaryIO::readLatticeObject< sobj, sobj >(field, filename, munge, offset, format,nersc_csum,scidac_csuma,scidac_csumb);
/////////////////////////////////////////////
// Insist checksum is next record
/////////////////////////////////////////////
readLimeObject(scidacChecksum_,std::string("scidacChecksum"),record_name);
/////////////////////////////////////////////
// Verify checksums
/////////////////////////////////////////////
scidacChecksumVerify(scidacChecksum_,scidac_csuma,scidac_csumb);
return;
}
}
}
////////////////////////////////////////////
// Read a generic serialisable object
////////////////////////////////////////////
template<class serialisable_object>
void readLimeObject(serialisable_object &object,std::string object_name,std::string record_name)
{
std::string xmlstring;
// should this be a do while; can we miss a first record??
while ( limeReaderNextRecord(LimeR) == LIME_SUCCESS ) {
~ILDGIO() { fclose(File); }
uint64_t nbytes = limeReaderBytes(LimeR);//size of this record (configuration)
int createHeader(std::string message, int MB, int ME, size_t PayloadSize, LimeWriter* L){
if ( strncmp(limeReaderType(LimeR), record_name.c_str(),strlen(record_name.c_str()) ) ) {
std::vector<char> xmlc(nbytes+1,'\0');
limeReaderReadData((void *)&xmlc[0], &nbytes, LimeR);
XmlReader RD(&xmlc[0],"");
read(RD,object_name,object);
return;
}
}
assert(0);
}
};
class GridLimeWriter : public BinaryIO {
public:
///////////////////////////////////////////////////
// FIXME: format for RNG? Now just binary out instead
///////////////////////////////////////////////////
FILE *File;
LimeWriter *LimeW;
std::string filename;
void open(std::string &_filename) {
filename= _filename;
File = fopen(filename.c_str(), "w");
LimeW = limeCreateWriter(File); assert(LimeW != NULL );
}
/////////////////////////////////////////////
// Close the file
/////////////////////////////////////////////
void close(void) {
fclose(File);
// limeDestroyWriter(LimeW);
}
///////////////////////////////////////////////////////
// Lime utility functions
///////////////////////////////////////////////////////
int createLimeRecordHeader(std::string message, int MB, int ME, size_t PayloadSize)
{
LimeRecordHeader *h;
h = limeCreateHeader(MB, ME, const_cast<char *>(message.c_str()), PayloadSize);
int status = limeWriteRecordHeader(h, L);
if (status < 0) {
std::cerr << "ILDG Header error\n";
return status;
}
assert(limeWriteRecordHeader(h, LimeW) >= 0);
limeDestroyHeader(h);
return LIME_SUCCESS;
}
////////////////////////////////////////////
// Write a generic serialisable object
////////////////////////////////////////////
template<class serialisable_object>
void writeLimeObject(int MB,int ME,serialisable_object &object,std::string object_name,std::string record_name)
{
std::string xmlstring;
{
XmlWriter WR("","");
write(WR,object_name,object);
xmlstring = WR.XmlString();
}
uint64_t nbytes = xmlstring.size();
int err;
LimeRecordHeader *h = limeCreateHeader(MB, ME,(char *)record_name.c_str(), nbytes); assert(h!= NULL);
unsigned int writeHeader(ILDGField &header) {
// write header in LIME
n_uint64_t nbytes;
int MB_flag = 1, ME_flag = 0;
err=limeWriteRecordHeader(h, LimeW); assert(err>=0);
err=limeWriteRecordData(&xmlstring[0], &nbytes, LimeW); assert(err>=0);
err=limeWriterCloseRecord(LimeW); assert(err>=0);
limeDestroyHeader(h);
}
////////////////////////////////////////////
// Write a generic lattice field and csum
////////////////////////////////////////////
template<class vobj>
void writeLimeLatticeBinaryObject(Lattice<vobj> &field,std::string record_name)
{
////////////////////////////////////////////
// Create record header
////////////////////////////////////////////
typedef typename vobj::scalar_object sobj;
int err;
uint32_t nersc_csum,scidac_csuma,scidac_csumb;
uint64_t PayloadSize = sizeof(sobj) * field._grid->_gsites;
createLimeRecordHeader(record_name, 0, 0, PayloadSize);
char message[] = "ildg-format";
nbytes = strlen(message);
LimeHeader = limeCreateHeader(MB_flag, ME_flag, message, nbytes);
limeWriteRecordHeader(LimeHeader, LimeW);
limeDestroyHeader(LimeHeader);
// save the xml header here
// use the xml_writer to c++ streams in pugixml
// and convert to char message
limeWriteRecordData(message, &nbytes, LimeW);
limeWriterCloseRecord(LimeW);
////////////////////////////////////////////////////////////////////
// NB: FILE and iostream are jointly writing disjoint sequences in the
// the same file through different file handles (integer units).
//
// These are both buffered, so why I think this code is right is as follows.
//
// i) write record header to FILE *File, telegraphing the size.
// ii) ftell reads the offset from FILE *File .
// iii) iostream / MPI Open independently seek this offset. Write sequence direct to disk.
// Closes iostream and flushes.
// iv) fseek on FILE * to end of this disjoint section.
// v) Continue writing scidac record.
////////////////////////////////////////////////////////////////////
off_t offset = ftell(File);
std::string format = getFormatString<vobj>();
BinarySimpleMunger<sobj,sobj> munge;
BinaryIO::writeLatticeObject<vobj,sobj>(field, filename, munge, offset, format,nersc_csum,scidac_csuma,scidac_csumb);
err=limeWriterCloseRecord(LimeW); assert(err>=0);
////////////////////////////////////////
// Write checksum element, propagaing forward from the BinaryIO
// Always pair a checksum with a binary object, and close message
////////////////////////////////////////
scidacChecksum checksum;
std::stringstream streama; streama << std::hex << scidac_csuma;
std::stringstream streamb; streamb << std::hex << scidac_csumb;
checksum.suma= streama.str();
checksum.sumb= streamb.str();
std::cout << GridLogMessage<<" writing scidac checksums "<<std::hex<<scidac_csuma<<"/"<<scidac_csumb<<std::dec<<std::endl;
writeLimeObject(0,1,checksum,std::string("scidacChecksum" ),std::string(SCIDAC_CHECKSUM));
}
};
return 0;
}
unsigned int readHeader(ILDGField &header) {
return 0;
class ScidacWriter : public GridLimeWriter {
public:
template<class SerialisableUserFile>
void writeScidacFileRecord(GridBase *grid,SerialisableUserFile &_userFile)
{
scidacFile _scidacFile(grid);
writeLimeObject(1,0,_scidacFile,_scidacFile.SerialisableClassName(),std::string(SCIDAC_PRIVATE_FILE_XML));
writeLimeObject(0,1,_userFile,_userFile.SerialisableClassName(),std::string(SCIDAC_FILE_XML));
}
////////////////////////////////////////////////
// Write generic lattice field in scidac format
////////////////////////////////////////////////
template <class vobj, class userRecord>
void writeScidacFieldRecord(Lattice<vobj> &field,userRecord _userRecord)
{
typedef typename vobj::scalar_object sobj;
uint64_t nbytes;
GridBase * grid = field._grid;
////////////////////////////////////////
// fill the Grid header
////////////////////////////////////////
FieldMetaData header;
scidacRecord _scidacRecord;
scidacFile _scidacFile;
ScidacMetaData(field,header,_scidacRecord,_scidacFile);
//////////////////////////////////////////////
// Fill the Lime file record by record
//////////////////////////////////////////////
writeLimeObject(1,0,header ,std::string("FieldMetaData"),std::string(GRID_FORMAT)); // Open message
writeLimeObject(0,0,_userRecord,_userRecord.SerialisableClassName(),std::string(SCIDAC_RECORD_XML));
writeLimeObject(0,0,_scidacRecord,_scidacRecord.SerialisableClassName(),std::string(SCIDAC_PRIVATE_RECORD_XML));
writeLimeLatticeBinaryObject(field,std::string(ILDG_BINARY_DATA)); // Closes message with checksum
}
};
class IldgWriter : public ScidacWriter {
public:
///////////////////////////////////
// A little helper
///////////////////////////////////
void writeLimeIldgLFN(std::string &LFN)
{
uint64_t PayloadSize = LFN.size();
int err;
createLimeRecordHeader(ILDG_DATA_LFN, 0 , 0, PayloadSize);
err=limeWriteRecordData(const_cast<char*>(LFN.c_str()), &PayloadSize,LimeW); assert(err>=0);
err=limeWriterCloseRecord(LimeW); assert(err>=0);
}
////////////////////////////////////////////////////////////////
// Special ILDG operations ; gauge configs only.
// Don't require scidac records EXCEPT checksum
// Use Grid MetaData object if present.
////////////////////////////////////////////////////////////////
template <class vsimd>
uint32_t readConfiguration(Lattice<iLorentzColourMatrix<vsimd> > &Umu) {
typedef Lattice<iLorentzColourMatrix<vsimd> > GaugeField;
typedef LorentzColourMatrixD sobjd;
typedef LorentzColourMatrixF sobjf;
typedef iLorentzColourMatrix<vsimd> itype;
typedef LorentzColourMatrix sobj;
GridBase *grid = Umu._grid;
ILDGField header;
readHeader(header);
// now just the conf, ignore the header
std::string format = std::string("IEEE64BIG");
do {limeReaderNextRecord(LimeR);}
while (strncmp(limeReaderType(LimeR), "ildg-binary-data",16));
n_uint64_t nbytes = limeReaderBytes(LimeR);//size of this record (configuration)
ILDGtype ILDGt(true, LimeR);
// this is special for double prec data, just for the moment
uint32_t csum = BinaryIO::readObjectParallel< itype, sobjd >(
Umu, filename, ILDGMunger<sobjd, sobj>(), 0, format, ILDGt);
// Check configuration
// todo
return csum;
}
template <class vsimd>
uint32_t writeConfiguration(Lattice<iLorentzColourMatrix<vsimd> > &Umu, std::string format) {
void writeConfiguration(Lattice<iLorentzColourMatrix<vsimd> > &Umu,int sequence,std::string LFN,std::string description)
{
GridBase * grid = Umu._grid;
typedef Lattice<iLorentzColourMatrix<vsimd> > GaugeField;
typedef iLorentzColourMatrix<vsimd> vobj;
typedef typename vobj::scalar_object sobj;
typedef LorentzColourMatrixD fobj;
ILDGField header;
// fill the header
header.floating_point = format;
uint64_t nbytes;
ILDGUnmunger<fobj, sobj> munge;
unsigned int offset = writeHeader(header);
////////////////////////////////////////
// fill the Grid header
////////////////////////////////////////
FieldMetaData header;
scidacRecord _scidacRecord;
scidacFile _scidacFile;
BinaryIO::Uint32Checksum<vobj, fobj>(Umu, munge, header.checksum);
ScidacMetaData(Umu,header,_scidacRecord,_scidacFile);
// Write data record header
n_uint64_t PayloadSize = sizeof(fobj) * Umu._grid->_gsites;
createHeader("ildg-binary-data", 0, 1, PayloadSize, LimeW);
std::string format = header.floating_point;
header.ensemble_id = description;
header.ensemble_label = description;
header.sequence_number = sequence;
header.ildg_lfn = LFN;
ILDGtype ILDGt(true, LimeW);
uint32_t csum = BinaryIO::writeObjectParallel<vobj, fobj>(
Umu, filename, munge, 0, header.floating_point, ILDGt);
assert ( (format == std::string("IEEE32BIG"))
||(format == std::string("IEEE64BIG")) );
limeWriterCloseRecord(LimeW);
//////////////////////////////////////////////////////
// Fill ILDG header data struct
//////////////////////////////////////////////////////
ildgFormat ildgfmt ;
ildgfmt.field = std::string("su3gauge");
// Last record
// the logical file name LNF
// look into documentation on how to generate this string
std::string LNF = "empty";
if ( format == std::string("IEEE32BIG") ) {
ildgfmt.precision = 32;
} else {
ildgfmt.precision = 64;
}
ildgfmt.version = 1.0;
ildgfmt.lx = header.dimension[0];
ildgfmt.ly = header.dimension[1];
ildgfmt.lz = header.dimension[2];
ildgfmt.lt = header.dimension[3];
assert(header.nd==4);
assert(header.nd==header.dimension.size());
//////////////////////////////////////////////////////////////////////////////
// Fill the USQCD info field
//////////////////////////////////////////////////////////////////////////////
usqcdInfo info;
info.version=1.0;
info.plaq = header.plaquette;
info.linktr = header.link_trace;
PayloadSize = sizeof(LNF);
createHeader("ildg-binary-lfn", 1 , 1, PayloadSize, LimeW);
limeWriteRecordData(const_cast<char*>(LNF.c_str()), &PayloadSize, LimeW);
limeWriterCloseRecord(LimeW);
return csum;
std::cout << GridLogMessage << " Writing config; IldgIO "<<std::endl;
//////////////////////////////////////////////
// Fill the Lime file record by record
//////////////////////////////////////////////
writeLimeObject(1,0,header ,std::string("FieldMetaData"),std::string(GRID_FORMAT)); // Open message
writeLimeObject(0,0,_scidacFile,_scidacFile.SerialisableClassName(),std::string(SCIDAC_PRIVATE_FILE_XML));
writeLimeObject(0,1,info,info.SerialisableClassName(),std::string(SCIDAC_FILE_XML));
writeLimeObject(1,0,_scidacRecord,_scidacRecord.SerialisableClassName(),std::string(SCIDAC_PRIVATE_RECORD_XML));
writeLimeObject(0,0,info,info.SerialisableClassName(),std::string(SCIDAC_RECORD_XML));
writeLimeObject(0,0,ildgfmt,std::string("ildgFormat") ,std::string(ILDG_FORMAT)); // rec
writeLimeIldgLFN(header.ildg_lfn); // rec
writeLimeLatticeBinaryObject(Umu,std::string(ILDG_BINARY_DATA)); // Closes message with checksum
// limeDestroyWriter(LimeW);
fclose(File);
}
// format for RNG? Now just binary out
};
}
}
class IldgReader : public GridLimeReader {
public:
////////////////////////////////////////////////////////////////
// Read either Grid/SciDAC/ILDG configuration
// Don't require scidac records EXCEPT checksum
// Use Grid MetaData object if present.
// Else use ILDG MetaData object if present.
// Else use SciDAC MetaData object if present.
////////////////////////////////////////////////////////////////
template <class vsimd>
void readConfiguration(Lattice<iLorentzColourMatrix<vsimd> > &Umu, FieldMetaData &FieldMetaData_) {
typedef Lattice<iLorentzColourMatrix<vsimd> > GaugeField;
typedef typename GaugeField::vector_object vobj;
typedef typename vobj::scalar_object sobj;
typedef LorentzColourMatrixF fobj;
typedef LorentzColourMatrixD dobj;
GridBase *grid = Umu._grid;
std::vector<int> dims = Umu._grid->FullDimensions();
assert(dims.size()==4);
// Metadata holders
ildgFormat ildgFormat_ ;
std::string ildgLFN_ ;
scidacChecksum scidacChecksum_;
usqcdInfo usqcdInfo_ ;
// track what we read from file
int found_ildgFormat =0;
int found_ildgLFN =0;
int found_scidacChecksum=0;
int found_usqcdInfo =0;
int found_ildgBinary =0;
int found_FieldMetaData =0;
uint32_t nersc_csum;
uint32_t scidac_csuma;
uint32_t scidac_csumb;
// Binary format
std::string format;
//////////////////////////////////////////////////////////////////////////
// Loop over all records
// -- Order is poorly guaranteed except ILDG header preceeds binary section.
// -- Run like an event loop.
// -- Impose trust hierarchy. Grid takes precedence & look for ILDG, and failing
// that Scidac.
// -- Insist on Scidac checksum record.
//////////////////////////////////////////////////////////////////////////
while ( limeReaderNextRecord(LimeR) == LIME_SUCCESS ) {
uint64_t nbytes = limeReaderBytes(LimeR);//size of this record (configuration)
//////////////////////////////////////////////////////////////////
// If not BINARY_DATA read a string and parse
//////////////////////////////////////////////////////////////////
if ( strncmp(limeReaderType(LimeR), ILDG_BINARY_DATA,strlen(ILDG_BINARY_DATA) ) ) {
// Copy out the string
std::vector<char> xmlc(nbytes+1,'\0');
limeReaderReadData((void *)&xmlc[0], &nbytes, LimeR);
std::cout << GridLogMessage<< "Non binary record :" <<limeReaderType(LimeR) <<std::endl; //<<"\n"<<(&xmlc[0])<<std::endl;
//////////////////////////////////
// ILDG format record
if ( !strncmp(limeReaderType(LimeR), ILDG_FORMAT,strlen(ILDG_FORMAT)) ) {
XmlReader RD(&xmlc[0],"");
read(RD,"ildgFormat",ildgFormat_);
if ( ildgFormat_.precision == 64 ) format = std::string("IEEE64BIG");
if ( ildgFormat_.precision == 32 ) format = std::string("IEEE32BIG");
assert( ildgFormat_.lx == dims[0]);
assert( ildgFormat_.ly == dims[1]);
assert( ildgFormat_.lz == dims[2]);
assert( ildgFormat_.lt == dims[3]);
found_ildgFormat = 1;
}
if ( !strncmp(limeReaderType(LimeR), ILDG_DATA_LFN,strlen(ILDG_DATA_LFN)) ) {
FieldMetaData_.ildg_lfn = std::string(&xmlc[0]);
found_ildgLFN = 1;
}
if ( !strncmp(limeReaderType(LimeR), GRID_FORMAT,strlen(ILDG_FORMAT)) ) {
XmlReader RD(&xmlc[0],"");
read(RD,"FieldMetaData",FieldMetaData_);
format = FieldMetaData_.floating_point;
assert(FieldMetaData_.dimension[0] == dims[0]);
assert(FieldMetaData_.dimension[1] == dims[1]);
assert(FieldMetaData_.dimension[2] == dims[2]);
assert(FieldMetaData_.dimension[3] == dims[3]);
found_FieldMetaData = 1;
}
if ( !strncmp(limeReaderType(LimeR), SCIDAC_RECORD_XML,strlen(SCIDAC_RECORD_XML)) ) {
std::string xmls(&xmlc[0]);
// is it a USQCD info field
if ( xmls.find(std::string("usqcdInfo")) != std::string::npos ) {
std::cout << GridLogMessage<<"...found a usqcdInfo field"<<std::endl;
XmlReader RD(&xmlc[0],"");
read(RD,"usqcdInfo",usqcdInfo_);
found_usqcdInfo = 1;
}
}
if ( !strncmp(limeReaderType(LimeR), SCIDAC_CHECKSUM,strlen(SCIDAC_CHECKSUM)) ) {
XmlReader RD(&xmlc[0],"");
read(RD,"scidacChecksum",scidacChecksum_);
found_scidacChecksum = 1;
}
} else {
/////////////////////////////////
// Binary data
/////////////////////////////////
std::cout << GridLogMessage << "ILDG Binary record found : " ILDG_BINARY_DATA << std::endl;
off_t offset= ftell(File);
if ( format == std::string("IEEE64BIG") ) {
GaugeSimpleMunger<dobj, sobj> munge;
BinaryIO::readLatticeObject< vobj, dobj >(Umu, filename, munge, offset, format,nersc_csum,scidac_csuma,scidac_csumb);
} else {
GaugeSimpleMunger<fobj, sobj> munge;
BinaryIO::readLatticeObject< vobj, fobj >(Umu, filename, munge, offset, format,nersc_csum,scidac_csuma,scidac_csumb);
}
found_ildgBinary = 1;
}
}
//////////////////////////////////////////////////////
// Minimally must find binary segment and checksum
// Since this is an ILDG reader require ILDG format
//////////////////////////////////////////////////////
assert(found_ildgBinary);
assert(found_ildgFormat);
assert(found_scidacChecksum);
// Must find something with the lattice dimensions
assert(found_FieldMetaData||found_ildgFormat);
if ( found_FieldMetaData ) {
std::cout << GridLogMessage<<"Grid MetaData was record found: configuration was probably written by Grid ! Yay ! "<<std::endl;
} else {
assert(found_ildgFormat);
assert ( ildgFormat_.field == std::string("su3gauge") );
///////////////////////////////////////////////////////////////////////////////////////
// Populate our Grid metadata as best we can
///////////////////////////////////////////////////////////////////////////////////////
std::ostringstream vers; vers << ildgFormat_.version;
FieldMetaData_.hdr_version = vers.str();
FieldMetaData_.data_type = std::string("4D_SU3_GAUGE_3X3");
FieldMetaData_.nd=4;
FieldMetaData_.dimension.resize(4);
FieldMetaData_.dimension[0] = ildgFormat_.lx ;
FieldMetaData_.dimension[1] = ildgFormat_.ly ;
FieldMetaData_.dimension[2] = ildgFormat_.lz ;
FieldMetaData_.dimension[3] = ildgFormat_.lt ;
if ( found_usqcdInfo ) {
FieldMetaData_.plaquette = usqcdInfo_.plaq;
FieldMetaData_.link_trace= usqcdInfo_.linktr;
std::cout << GridLogMessage <<"This configuration was probably written by USQCD "<<std::endl;
std::cout << GridLogMessage <<"USQCD xml record Plaquette : "<<FieldMetaData_.plaquette<<std::endl;
std::cout << GridLogMessage <<"USQCD xml record LinkTrace : "<<FieldMetaData_.link_trace<<std::endl;
} else {
FieldMetaData_.plaquette = 0.0;
FieldMetaData_.link_trace= 0.0;
std::cout << GridLogWarning << "This configuration is unsafe with no plaquette records that can verify it !!! "<<std::endl;
}
}
////////////////////////////////////////////////////////////
// Really really want to mandate a scidac checksum
////////////////////////////////////////////////////////////
if ( found_scidacChecksum ) {
FieldMetaData_.scidac_checksuma = stoull(scidacChecksum_.suma,0,16);
FieldMetaData_.scidac_checksumb = stoull(scidacChecksum_.sumb,0,16);
scidacChecksumVerify(scidacChecksum_,scidac_csuma,scidac_csumb);
assert( scidac_csuma ==FieldMetaData_.scidac_checksuma);
assert( scidac_csumb ==FieldMetaData_.scidac_checksumb);
std::cout << GridLogMessage<<"SciDAC checksums match " << std::endl;
} else {
std::cout << GridLogWarning<<"SciDAC checksums not found. This is unsafe. " << std::endl;
assert(0); // Can I insist always checksum ?
}
if ( found_FieldMetaData || found_usqcdInfo ) {
FieldMetaData checker;
GaugeStatistics(Umu,checker);
assert(fabs(checker.plaquette - FieldMetaData_.plaquette )<1.0e-5);
assert(fabs(checker.link_trace - FieldMetaData_.link_trace)<1.0e-5);
std::cout << GridLogMessage<<"Plaquette and link trace match " << std::endl;
}
}
};
}}
//HAVE_LIME
#endif

225
lib/parallelIO/IldgIOtypes.h
View File

@ -34,47 +34,198 @@ extern "C" { // for linkage
namespace Grid {
struct ILDGtype {
bool is_ILDG;
LimeWriter* LW;
LimeReader* LR;
/////////////////////////////////////////////////////////////////////////////////
// Data representation of records that enter ILDG and SciDac formats
/////////////////////////////////////////////////////////////////////////////////
ILDGtype(bool is, LimeWriter* L) : is_ILDG(is), LW(L), LR(NULL) {}
ILDGtype(bool is, LimeReader* L) : is_ILDG(is), LW(NULL), LR(L) {}
ILDGtype() : is_ILDG(false), LW(NULL), LR(NULL) {}
};
#define GRID_FORMAT "grid-format"
#define ILDG_FORMAT "ildg-format"
#define ILDG_BINARY_DATA "ildg-binary-data"
#define ILDG_DATA_LFN "ildg-data-lfn"
#define SCIDAC_CHECKSUM "scidac-checksum"
#define SCIDAC_PRIVATE_FILE_XML "scidac-private-file-xml"
#define SCIDAC_FILE_XML "scidac-file-xml"
#define SCIDAC_PRIVATE_RECORD_XML "scidac-private-record-xml"
#define SCIDAC_RECORD_XML "scidac-record-xml"
#define SCIDAC_BINARY_DATA "scidac-binary-data"
// Unused SCIDAC records names; could move to support this functionality
#define SCIDAC_SITELIST "scidac-sitelist"
class ILDGField {
////////////////////////////////////////////////////////////
const int GRID_IO_SINGLEFILE = 0; // hardcode lift from QIO compat
const int GRID_IO_MULTIFILE = 1; // hardcode lift from QIO compat
const int GRID_IO_FIELD = 0; // hardcode lift from QIO compat
const int GRID_IO_GLOBAL = 1; // hardcode lift from QIO compat
////////////////////////////////////////////////////////////
/////////////////////////////////////////////////////////////////////////////////
// QIO uses mandatory "private" records fixed format
// Private is in principle "opaque" however it can't be changed now because that would break existing
// file compatability, so should be correct to assume the undocumented but defacto file structure.
/////////////////////////////////////////////////////////////////////////////////
////////////////////////
// Scidac private file xml
// <?xml version="1.0" encoding="UTF-8"?><scidacFile><version>1.1</version><spacetime>4</spacetime><dims>16 16 16 32 </dims><volfmt>0</volfmt></scidacFile>
////////////////////////
struct scidacFile : Serializable {
public:
// header strings (not in order)
std::vector<int> dimension;
std::vector<std::string> boundary;
int data_start;
std::string hdr_version;
std::string storage_format;
// Checks on data
double link_trace;
double plaquette;
uint32_t checksum;
unsigned int sequence_number;
std::string data_type;
std::string ensemble_id;
std::string ensemble_label;
std::string creator;
std::string creator_hardware;
std::string creation_date;
std::string archive_date;
std::string floating_point;
};
}
#else
namespace Grid {
GRID_SERIALIZABLE_CLASS_MEMBERS(scidacFile,
double, version,
int, spacetime,
std::string, dims, // must convert to int
int, volfmt);
struct ILDGtype {
bool is_ILDG;
ILDGtype() : is_ILDG(false) {}
};
}
std::vector<int> getDimensions(void) {
std::stringstream stream(dims);
std::vector<int> dimensions;
int n;
while(stream >> n){
dimensions.push_back(n);
}
return dimensions;
}
void setDimensions(std::vector<int> dimensions) {
char delimiter = ' ';
std::stringstream stream;
for(int i=0;i<dimensions.size();i++){
stream << dimensions[i];
if ( i != dimensions.size()-1) {
stream << delimiter <<std::endl;
}
}
dims = stream.str();
}
// Constructor provides Grid
scidacFile() =default; // default constructor
scidacFile(GridBase * grid){
version = 1.0;
spacetime = grid->_ndimension;
setDimensions(grid->FullDimensions());
volfmt = GRID_IO_SINGLEFILE;
}
};
///////////////////////////////////////////////////////////////////////
// scidac-private-record-xml : example
// <scidacRecord>
// <version>1.1</version><date>Tue Jul 26 21:14:44 2011 UTC</date><recordtype>0</recordtype>
// <datatype>QDP_D3_ColorMatrix</datatype><precision>D</precision><colors>3</colors><spins>4</spins>
// <typesize>144</typesize><datacount>4</datacount>
// </scidacRecord>
///////////////////////////////////////////////////////////////////////
struct scidacRecord : Serializable {
public:
GRID_SERIALIZABLE_CLASS_MEMBERS(scidacRecord,
double, version,
std::string, date,
int, recordtype,
std::string, datatype,
std::string, precision,
int, colors,
int, spins,
int, typesize,
int, datacount);
scidacRecord() { version =1.0; }
};
////////////////////////
// ILDG format
////////////////////////
struct ildgFormat : Serializable {
public:
GRID_SERIALIZABLE_CLASS_MEMBERS(ildgFormat,
double, version,
std::string, field,
int, precision,
int, lx,
int, ly,
int, lz,
int, lt);
ildgFormat() { version=1.0; };
};
////////////////////////
// USQCD info
////////////////////////
struct usqcdInfo : Serializable {
public:
GRID_SERIALIZABLE_CLASS_MEMBERS(usqcdInfo,
double, version,
double, plaq,
double, linktr,
std::string, info);
usqcdInfo() {
version=1.0;
};
};
////////////////////////
// Scidac Checksum
////////////////////////
struct scidacChecksum : Serializable {
public:
GRID_SERIALIZABLE_CLASS_MEMBERS(scidacChecksum,
double, version,
std::string, suma,
std::string, sumb);
scidacChecksum() {
version=1.0;
};
};
////////////////////////////////////////////////////////////////////////////////////////////////////////////////
// Type: scidac-file-xml <title>MILC ILDG archival gauge configuration</title>
////////////////////////////////////////////////////////////////////////////////////////////////////////////////
////////////////////////////////////////////////////////////////////////////////////////////////////////////////
// Type:
////////////////////////////////////////////////////////////////////////////////////////////////////////////////
////////////////////////
// Scidac private file xml
// <?xml version="1.0" encoding="UTF-8"?><scidacFile><version>1.1</version><spacetime>4</spacetime><dims>16 16 16 32 </dims><volfmt>0</volfmt></scidacFile>
////////////////////////
#if 0
////////////////////////////////////////////////////////////////////////////////////////
// From http://www.physics.utah.edu/~detar/scidac/qio_2p3.pdf
////////////////////////////////////////////////////////////////////////////////////////
struct usqcdPropFile : Serializable {
public:
GRID_SERIALIZABLE_CLASS_MEMBERS(usqcdPropFile,
double, version,
std::string, type,
std::string, info);
usqcdPropFile() {
version=1.0;
};
};
struct usqcdSourceInfo : Serializable {
public:
GRID_SERIALIZABLE_CLASS_MEMBERS(usqcdSourceInfo,
double, version,
std::string, info);
usqcdSourceInfo() {
version=1.0;
};
};
struct usqcdPropInfo : Serializable {
public:
GRID_SERIALIZABLE_CLASS_MEMBERS(usqcdPropInfo,
double, version,
int, spin,
int, color,
std::string, info);
usqcdPropInfo() {
version=1.0;
};
};
#endif
}
#endif
#endif

325
lib/parallelIO/MetaData.h Normal file
View File

@ -0,0 +1,325 @@
/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: ./lib/parallelIO/NerscIO.h
Copyright (C) 2015
Author: Peter Boyle <paboyle@ph.ed.ac.uk>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#include <algorithm>
#include <iostream>
#include <iomanip>
#include <fstream>
#include <map>
#include <unistd.h>
#include <sys/utsname.h>
#include <pwd.h>
namespace Grid {
///////////////////////////////////////////////////////
// Precision mapping
///////////////////////////////////////////////////////
template<class vobj> static std::string getFormatString (void)
{
std::string format;
typedef typename getPrecision<vobj>::real_scalar_type stype;
if ( sizeof(stype) == sizeof(float) ) {
format = std::string("IEEE32BIG");
}
if ( sizeof(stype) == sizeof(double) ) {
format = std::string("IEEE64BIG");
}
return format;
}
////////////////////////////////////////////////////////////////////////////////
// header specification/interpretation
////////////////////////////////////////////////////////////////////////////////
class FieldMetaData : Serializable {
public:
GRID_SERIALIZABLE_CLASS_MEMBERS(FieldMetaData,
int, nd,
std::vector<int>, dimension,
std::vector<std::string>, boundary,
int, data_start,
std::string, hdr_version,
std::string, storage_format,
double, link_trace,
double, plaquette,
uint32_t, checksum,
uint32_t, scidac_checksuma,
uint32_t, scidac_checksumb,
unsigned int, sequence_number,
std::string, data_type,
std::string, ensemble_id,
std::string, ensemble_label,
std::string, ildg_lfn,
std::string, creator,
std::string, creator_hardware,
std::string, creation_date,
std::string, archive_date,
std::string, floating_point);
FieldMetaData(void) {
nd=4;
dimension.resize(4);
boundary.resize(4);
}
};
namespace QCD {
using namespace Grid;
//////////////////////////////////////////////////////////////////////
// Bit and Physical Checksumming and QA of data
//////////////////////////////////////////////////////////////////////
inline void GridMetaData(GridBase *grid,FieldMetaData &header)
{
int nd = grid->_ndimension;
header.nd = nd;
header.dimension.resize(nd);
header.boundary.resize(nd);
for(int d=0;d<nd;d++) {
header.dimension[d] = grid->_fdimensions[d];
}
for(int d=0;d<nd;d++) {
header.boundary[d] = std::string("PERIODIC");
}
}
inline void MachineCharacteristics(FieldMetaData &header)
{
// Who
struct passwd *pw = getpwuid (getuid());
if (pw) header.creator = std::string(pw->pw_name);
// When
std::time_t t = std::time(nullptr);
std::tm tm_ = *std::localtime(&t);
std::ostringstream oss;
// oss << std::put_time(&tm_, "%c %Z");
header.creation_date = oss.str();
header.archive_date = header.creation_date;
// What
struct utsname name; uname(&name);
header.creator_hardware = std::string(name.nodename)+"-";
header.creator_hardware+= std::string(name.machine)+"-";
header.creator_hardware+= std::string(name.sysname)+"-";
header.creator_hardware+= std::string(name.release);
}
#define dump_meta_data(field, s) \
s << "BEGIN_HEADER" << std::endl; \
s << "HDR_VERSION = " << field.hdr_version << std::endl; \
s << "DATATYPE = " << field.data_type << std::endl; \
s << "STORAGE_FORMAT = " << field.storage_format << std::endl; \
for(int i=0;i<4;i++){ \
s << "DIMENSION_" << i+1 << " = " << field.dimension[i] << std::endl ; \
} \
s << "LINK_TRACE = " << std::setprecision(10) << field.link_trace << std::endl; \
s << "PLAQUETTE = " << std::setprecision(10) << field.plaquette << std::endl; \
for(int i=0;i<4;i++){ \
s << "BOUNDARY_"<<i+1<<" = " << field.boundary[i] << std::endl; \
} \
\
s << "CHECKSUM = "<< std::hex << std::setw(10) << field.checksum << std::dec<<std::endl; \
s << "SCIDAC_CHECKSUMA = "<< std::hex << std::setw(10) << field.scidac_checksuma << std::dec<<std::endl; \
s << "SCIDAC_CHECKSUMB = "<< std::hex << std::setw(10) << field.scidac_checksumb << std::dec<<std::endl; \
s << "ENSEMBLE_ID = " << field.ensemble_id << std::endl; \
s << "ENSEMBLE_LABEL = " << field.ensemble_label << std::endl; \
s << "SEQUENCE_NUMBER = " << field.sequence_number << std::endl; \
s << "CREATOR = " << field.creator << std::endl; \
s << "CREATOR_HARDWARE = "<< field.creator_hardware << std::endl; \
s << "CREATION_DATE = " << field.creation_date << std::endl; \
s << "ARCHIVE_DATE = " << field.archive_date << std::endl; \
s << "FLOATING_POINT = " << field.floating_point << std::endl; \
s << "END_HEADER" << std::endl;
template<class vobj> inline void PrepareMetaData(Lattice<vobj> & field, FieldMetaData &header)
{
GridBase *grid = field._grid;
std::string format = getFormatString<vobj>();
header.floating_point = format;
header.checksum = 0x0; // Nersc checksum unused in ILDG, Scidac
GridMetaData(grid,header);
MachineCharacteristics(header);
}
inline void GaugeStatistics(Lattice<vLorentzColourMatrixF> & data,FieldMetaData &header)
{
// How to convert data precision etc...
header.link_trace=Grid::QCD::WilsonLoops<PeriodicGimplF>::linkTrace(data);
header.plaquette =Grid::QCD::WilsonLoops<PeriodicGimplF>::avgPlaquette(data);
}
inline void GaugeStatistics(Lattice<vLorentzColourMatrixD> & data,FieldMetaData &header)
{
// How to convert data precision etc...
header.link_trace=Grid::QCD::WilsonLoops<PeriodicGimplD>::linkTrace(data);
header.plaquette =Grid::QCD::WilsonLoops<PeriodicGimplD>::avgPlaquette(data);
}
template<> inline void PrepareMetaData<vLorentzColourMatrixF>(Lattice<vLorentzColourMatrixF> & field, FieldMetaData &header)
{
GridBase *grid = field._grid;
std::string format = getFormatString<vLorentzColourMatrixF>();
header.floating_point = format;
header.checksum = 0x0; // Nersc checksum unused in ILDG, Scidac
GridMetaData(grid,header);
GaugeStatistics(field,header);
MachineCharacteristics(header);
}
template<> inline void PrepareMetaData<vLorentzColourMatrixD>(Lattice<vLorentzColourMatrixD> & field, FieldMetaData &header)
{
GridBase *grid = field._grid;
std::string format = getFormatString<vLorentzColourMatrixD>();
header.floating_point = format;
header.checksum = 0x0; // Nersc checksum unused in ILDG, Scidac
GridMetaData(grid,header);
GaugeStatistics(field,header);
MachineCharacteristics(header);
}
//////////////////////////////////////////////////////////////////////
// Utilities ; these are QCD aware
//////////////////////////////////////////////////////////////////////
inline void reconstruct3(LorentzColourMatrix & cm)
{
const int x=0;
const int y=1;
const int z=2;
for(int mu=0;mu<Nd;mu++){
cm(mu)()(2,x) = adj(cm(mu)()(0,y)*cm(mu)()(1,z)-cm(mu)()(0,z)*cm(mu)()(1,y)); //x= yz-zy
cm(mu)()(2,y) = adj(cm(mu)()(0,z)*cm(mu)()(1,x)-cm(mu)()(0,x)*cm(mu)()(1,z)); //y= zx-xz
cm(mu)()(2,z) = adj(cm(mu)()(0,x)*cm(mu)()(1,y)-cm(mu)()(0,y)*cm(mu)()(1,x)); //z= xy-yx
}
}
////////////////////////////////////////////////////////////////////////////////
// Some data types for intermediate storage
////////////////////////////////////////////////////////////////////////////////
template<typename vtype> using iLorentzColour2x3 = iVector<iVector<iVector<vtype, Nc>, 2>, Nd >;
typedef iLorentzColour2x3<Complex> LorentzColour2x3;
typedef iLorentzColour2x3<ComplexF> LorentzColour2x3F;
typedef iLorentzColour2x3<ComplexD> LorentzColour2x3D;
/////////////////////////////////////////////////////////////////////////////////
// Simple classes for precision conversion
/////////////////////////////////////////////////////////////////////////////////
template <class fobj, class sobj>
struct BinarySimpleUnmunger {
typedef typename getPrecision<fobj>::real_scalar_type fobj_stype;
typedef typename getPrecision<sobj>::real_scalar_type sobj_stype;
void operator()(sobj &in, fobj &out) {
// take word by word and transform accoding to the status
fobj_stype *out_buffer = (fobj_stype *)&out;
sobj_stype *in_buffer = (sobj_stype *)&in;
size_t fobj_words = sizeof(out) / sizeof(fobj_stype);
size_t sobj_words = sizeof(in) / sizeof(sobj_stype);
assert(fobj_words == sobj_words);
for (unsigned int word = 0; word < sobj_words; word++)
out_buffer[word] = in_buffer[word]; // type conversion on the fly
}
};
template <class fobj, class sobj>
struct BinarySimpleMunger {
typedef typename getPrecision<fobj>::real_scalar_type fobj_stype;
typedef typename getPrecision<sobj>::real_scalar_type sobj_stype;
void operator()(fobj &in, sobj &out) {
// take word by word and transform accoding to the status
fobj_stype *in_buffer = (fobj_stype *)&in;
sobj_stype *out_buffer = (sobj_stype *)&out;
size_t fobj_words = sizeof(in) / sizeof(fobj_stype);
size_t sobj_words = sizeof(out) / sizeof(sobj_stype);
assert(fobj_words == sobj_words);
for (unsigned int word = 0; word < sobj_words; word++)
out_buffer[word] = in_buffer[word]; // type conversion on the fly
}
};
template<class fobj,class sobj>
struct GaugeSimpleMunger{
void operator()(fobj &in, sobj &out) {
for (int mu = 0; mu < Nd; mu++) {
for (int i = 0; i < Nc; i++) {
for (int j = 0; j < Nc; j++) {
out(mu)()(i, j) = in(mu)()(i, j);
}}
}
};
};
template <class fobj, class sobj>
struct GaugeSimpleUnmunger {
void operator()(sobj &in, fobj &out) {
for (int mu = 0; mu < Nd; mu++) {
for (int i = 0; i < Nc; i++) {
for (int j = 0; j < Nc; j++) {
out(mu)()(i, j) = in(mu)()(i, j);
}}
}
};
};
template<class fobj,class sobj>
struct Gauge3x2munger{
void operator() (fobj &in,sobj &out){
for(int mu=0;mu<Nd;mu++){
for(int i=0;i<2;i++){
for(int j=0;j<3;j++){
out(mu)()(i,j) = in(mu)(i)(j);
}}
}
reconstruct3(out);
}
};
template<class fobj,class sobj>
struct Gauge3x2unmunger{
void operator() (sobj &in,fobj &out){
for(int mu=0;mu<Nd;mu++){
for(int i=0;i<2;i++){
for(int j=0;j<3;j++){
out(mu)(i)(j) = in(mu)()(i,j);
}}
}
}
};
}
}

383
lib/parallelIO/NerscIO.h
View File

@ -30,182 +30,11 @@
#ifndef GRID_NERSC_IO_H
#define GRID_NERSC_IO_H
#include <algorithm>
#include <iostream>
#include <iomanip>
#include <fstream>
#include <map>
#include <unistd.h>
#include <sys/utsname.h>
#include <pwd.h>
namespace Grid {
namespace QCD {
using namespace Grid;
////////////////////////////////////////////////////////////////////////////////
// Some data types for intermediate storage
////////////////////////////////////////////////////////////////////////////////
template<typename vtype> using iLorentzColour2x3 = iVector<iVector<iVector<vtype, Nc>, 2>, 4 >;
typedef iLorentzColour2x3<Complex> LorentzColour2x3;
typedef iLorentzColour2x3<ComplexF> LorentzColour2x3F;
typedef iLorentzColour2x3<ComplexD> LorentzColour2x3D;
////////////////////////////////////////////////////////////////////////////////
// header specification/interpretation
////////////////////////////////////////////////////////////////////////////////
class NerscField {
public:
// header strings (not in order)
int dimension[4];
std::string boundary[4];
int data_start;
std::string hdr_version;
std::string storage_format;
// Checks on data
double link_trace;
double plaquette;
uint32_t checksum;
unsigned int sequence_number;
std::string data_type;
std::string ensemble_id ;
std::string ensemble_label ;
std::string creator ;
std::string creator_hardware ;
std::string creation_date ;
std::string archive_date ;
std::string floating_point;
};
//////////////////////////////////////////////////////////////////////
// Bit and Physical Checksumming and QA of data
//////////////////////////////////////////////////////////////////////
inline void NerscGrid(GridBase *grid,NerscField &header)
{
assert(grid->_ndimension==4);
for(int d=0;d<4;d++) {
header.dimension[d] = grid->_fdimensions[d];
}
for(int d=0;d<4;d++) {
header.boundary[d] = std::string("PERIODIC");
}
}
template<class GaugeField>
inline void NerscStatistics(GaugeField & data,NerscField &header)
{
// How to convert data precision etc...
header.link_trace=Grid::QCD::WilsonLoops<PeriodicGimplR>::linkTrace(data);
header.plaquette =Grid::QCD::WilsonLoops<PeriodicGimplR>::avgPlaquette(data);
}
inline void NerscMachineCharacteristics(NerscField &header)
{
// Who
struct passwd *pw = getpwuid (getuid());
if (pw) header.creator = std::string(pw->pw_name);
// When
std::time_t t = std::time(nullptr);
std::tm tm = *std::localtime(&t);
std::ostringstream oss;
// oss << std::put_time(&tm, "%c %Z");
header.creation_date = oss.str();
header.archive_date = header.creation_date;
// What
struct utsname name; uname(&name);
header.creator_hardware = std::string(name.nodename)+"-";
header.creator_hardware+= std::string(name.machine)+"-";
header.creator_hardware+= std::string(name.sysname)+"-";
header.creator_hardware+= std::string(name.release);
}
//////////////////////////////////////////////////////////////////////
// Utilities ; these are QCD aware
//////////////////////////////////////////////////////////////////////
inline void NerscChecksum(uint32_t *buf,uint32_t buf_size_bytes,uint32_t &csum)
{
BinaryIO::Uint32Checksum(buf,buf_size_bytes,csum);
}
inline void reconstruct3(LorentzColourMatrix & cm)
{
const int x=0;
const int y=1;
const int z=2;
for(int mu=0;mu<4;mu++){
cm(mu)()(2,x) = adj(cm(mu)()(0,y)*cm(mu)()(1,z)-cm(mu)()(0,z)*cm(mu)()(1,y)); //x= yz-zy
cm(mu)()(2,y) = adj(cm(mu)()(0,z)*cm(mu)()(1,x)-cm(mu)()(0,x)*cm(mu)()(1,z)); //y= zx-xz
cm(mu)()(2,z) = adj(cm(mu)()(0,x)*cm(mu)()(1,y)-cm(mu)()(0,y)*cm(mu)()(1,x)); //z= xy-yx
}
}
template<class fobj,class sobj>
struct NerscSimpleMunger{
void operator()(fobj &in, sobj &out, uint32_t &csum) {
for (int mu = 0; mu < Nd; mu++) {
for (int i = 0; i < Nc; i++) {
for (int j = 0; j < Nc; j++) {
out(mu)()(i, j) = in(mu)()(i, j);
}
}
}
NerscChecksum((uint32_t *)&in, sizeof(in), csum);
};
};
template <class fobj, class sobj>
struct NerscSimpleUnmunger {
void operator()(sobj &in, fobj &out, uint32_t &csum) {
for (int mu = 0; mu < Nd; mu++) {
for (int i = 0; i < Nc; i++) {
for (int j = 0; j < Nc; j++) {
out(mu)()(i, j) = in(mu)()(i, j);
}
}
}
NerscChecksum((uint32_t *)&out, sizeof(out), csum);
};
};
template<class fobj,class sobj>
struct Nersc3x2munger{
void operator() (fobj &in,sobj &out,uint32_t &csum){
NerscChecksum((uint32_t *)&in,sizeof(in),csum);
for(int mu=0;mu<4;mu++){
for(int i=0;i<2;i++){
for(int j=0;j<3;j++){
out(mu)()(i,j) = in(mu)(i)(j);
}}
}
reconstruct3(out);
}
};
template<class fobj,class sobj>
struct Nersc3x2unmunger{
void operator() (sobj &in,fobj &out,uint32_t &csum){
for(int mu=0;mu<4;mu++){
for(int i=0;i<2;i++){
for(int j=0;j<3;j++){
out(mu)(i)(j) = in(mu)()(i,j);
}}
}
NerscChecksum((uint32_t *)&out,sizeof(out),csum);
}
};
////////////////////////////////////////////////////////////////////////////////
// Write and read from fstream; comput header offset for payload
////////////////////////////////////////////////////////////////////////////////
@ -216,42 +45,17 @@ namespace Grid {
std::ofstream fout(file,std::ios::out);
}
#define dump_nersc_header(field, s) \
s << "BEGIN_HEADER" << std::endl; \
s << "HDR_VERSION = " << field.hdr_version << std::endl; \
s << "DATATYPE = " << field.data_type << std::endl; \
s << "STORAGE_FORMAT = " << field.storage_format << std::endl; \
for(int i=0;i<4;i++){ \
s << "DIMENSION_" << i+1 << " = " << field.dimension[i] << std::endl ; \
} \
s << "LINK_TRACE = " << std::setprecision(10) << field.link_trace << std::endl; \
s << "PLAQUETTE = " << std::setprecision(10) << field.plaquette << std::endl; \
for(int i=0;i<4;i++){ \
s << "BOUNDARY_"<<i+1<<" = " << field.boundary[i] << std::endl; \
} \
\
s << "CHECKSUM = "<< std::hex << std::setw(10) << field.checksum << std::dec<<std::endl; \
s << "ENSEMBLE_ID = " << field.ensemble_id << std::endl; \
s << "ENSEMBLE_LABEL = " << field.ensemble_label << std::endl; \
s << "SEQUENCE_NUMBER = " << field.sequence_number << std::endl; \
s << "CREATOR = " << field.creator << std::endl; \
s << "CREATOR_HARDWARE = "<< field.creator_hardware << std::endl; \
s << "CREATION_DATE = " << field.creation_date << std::endl; \
s << "ARCHIVE_DATE = " << field.archive_date << std::endl; \
s << "FLOATING_POINT = " << field.floating_point << std::endl; \
s << "END_HEADER" << std::endl;
static inline unsigned int writeHeader(NerscField &field,std::string file)
static inline unsigned int writeHeader(FieldMetaData &field,std::string file)
{
std::ofstream fout(file,std::ios::out|std::ios::in);
fout.seekp(0,std::ios::beg);
dump_nersc_header(field, fout);
dump_meta_data(field, fout);
field.data_start = fout.tellp();
return field.data_start;
}
// for the header-reader
static inline int readHeader(std::string file,GridBase *grid, NerscField &field)
static inline int readHeader(std::string file,GridBase *grid, FieldMetaData &field)
{
int offset=0;
std::map<std::string,std::string> header;
@ -323,21 +127,21 @@ namespace Grid {
return field.data_start;
}
/////////////////////////////////////////////////////////////////////////////////////////////////////////////////////
// Now the meat: the object readers
/////////////////////////////////////////////////////////////////////////////////////////////////////////////////////
#define PARALLEL_READ
#define PARALLEL_WRITE
/////////////////////////////////////////////////////////////////////////////////////////////////////////////////////
// Now the meat: the object readers
/////////////////////////////////////////////////////////////////////////////////////////////////////////////////////
template<class vsimd>
static inline void readConfiguration(Lattice<iLorentzColourMatrix<vsimd> > &Umu,NerscField& header,std::string file)
{
template<class vsimd>
static inline void readConfiguration(Lattice<iLorentzColourMatrix<vsimd> > &Umu,
FieldMetaData& header,
std::string file)
{
typedef Lattice<iLorentzColourMatrix<vsimd> > GaugeField;
GridBase *grid = Umu._grid;
int offset = readHeader(file,Umu._grid,header);
NerscField clone(header);
FieldMetaData clone(header);
std::string format(header.floating_point);
@ -346,76 +150,78 @@ namespace Grid {
int ieee64big = (format == std::string("IEEE64BIG"));
int ieee64 = (format == std::string("IEEE64"));
uint32_t csum;
uint32_t nersc_csum,scidac_csuma,scidac_csumb;
// depending on datatype, set up munger;
// munger is a function of <floating point, Real, data_type>
if ( header.data_type == std::string("4D_SU3_GAUGE") ) {
if ( ieee32 || ieee32big ) {
#ifdef PARALLEL_READ
csum=BinaryIO::readObjectParallel<iLorentzColourMatrix<vsimd>, LorentzColour2x3F>
(Umu,file,Nersc3x2munger<LorentzColour2x3F,LorentzColourMatrix>(), offset,format);
#else
csum=BinaryIO::readObjectSerial<iLorentzColourMatrix<vsimd>, LorentzColour2x3F>
(Umu,file,Nersc3x2munger<LorentzColour2x3F,LorentzColourMatrix>(), offset,format);
#endif
}
if ( ieee64 || ieee64big ) {
#ifdef PARALLEL_READ
csum=BinaryIO::readObjectParallel<iLorentzColourMatrix<vsimd>, LorentzColour2x3D>
(Umu,file,Nersc3x2munger<LorentzColour2x3D,LorentzColourMatrix>(),offset,format);
#else
csum=BinaryIO::readObjectSerial<iLorentzColourMatrix<vsimd>, LorentzColour2x3D>
(Umu,file,Nersc3x2munger<LorentzColour2x3D,LorentzColourMatrix>(),offset,format);
#endif
}
} else if ( header.data_type == std::string("4D_SU3_GAUGE_3x3") ) {
if ( ieee32 || ieee32big ) {
#ifdef PARALLEL_READ
csum=BinaryIO::readObjectParallel<iLorentzColourMatrix<vsimd>,LorentzColourMatrixF>
(Umu,file,NerscSimpleMunger<LorentzColourMatrixF,LorentzColourMatrix>(),offset,format);
#else
csum=BinaryIO::readObjectSerial<iLorentzColourMatrix<vsimd>,LorentzColourMatrixF>
(Umu,file,NerscSimpleMunger<LorentzColourMatrixF,LorentzColourMatrix>(),offset,format);
#endif
BinaryIO::readLatticeObject<iLorentzColourMatrix<vsimd>, LorentzColour2x3F>
(Umu,file,Gauge3x2munger<LorentzColour2x3F,LorentzColourMatrix>(), offset,format,
nersc_csum,scidac_csuma,scidac_csumb);
}
if ( ieee64 || ieee64big ) {
#ifdef PARALLEL_READ
csum=BinaryIO::readObjectParallel<iLorentzColourMatrix<vsimd>,LorentzColourMatrixD>
(Umu,file,NerscSimpleMunger<LorentzColourMatrixD,LorentzColourMatrix>(),offset,format);
#else
csum=BinaryIO::readObjectSerial<iLorentzColourMatrix<vsimd>,LorentzColourMatrixD>
(Umu,file,NerscSimpleMunger<LorentzColourMatrixD,LorentzColourMatrix>(),offset,format);
#endif
BinaryIO::readLatticeObject<iLorentzColourMatrix<vsimd>, LorentzColour2x3D>
(Umu,file,Gauge3x2munger<LorentzColour2x3D,LorentzColourMatrix>(),offset,format,
nersc_csum,scidac_csuma,scidac_csumb);
}
} else if ( header.data_type == std::string("4D_SU3_GAUGE_3x3") ) {
if ( ieee32 || ieee32big ) {
BinaryIO::readLatticeObject<iLorentzColourMatrix<vsimd>,LorentzColourMatrixF>
(Umu,file,GaugeSimpleMunger<LorentzColourMatrixF,LorentzColourMatrix>(),offset,format,
nersc_csum,scidac_csuma,scidac_csumb);
}
if ( ieee64 || ieee64big ) {
BinaryIO::readLatticeObject<iLorentzColourMatrix<vsimd>,LorentzColourMatrixD>
(Umu,file,GaugeSimpleMunger<LorentzColourMatrixD,LorentzColourMatrix>(),offset,format,
nersc_csum,scidac_csuma,scidac_csumb);
}
} else {
assert(0);
}
NerscStatistics<GaugeField>(Umu,clone);
GaugeStatistics(Umu,clone);
std::cout<<GridLogMessage <<"NERSC Configuration "<<file<<" checksum "<<std::hex<< csum<< std::dec
std::cout<<GridLogMessage <<"NERSC Configuration "<<file<<" checksum "<<std::hex<<nersc_csum<< std::dec
<<" header "<<std::hex<<header.checksum<<std::dec <<std::endl;
std::cout<<GridLogMessage <<"NERSC Configuration "<<file<<" plaquette "<<clone.plaquette
<<" header "<<header.plaquette<<std::endl;
std::cout<<GridLogMessage <<"NERSC Configuration "<<file<<" link_trace "<<clone.link_trace
<<" header "<<header.link_trace<<std::endl;
if ( fabs(clone.plaquette -header.plaquette ) >= 1.0e-5 ) {
std::cout << " Plaquette mismatch "<<std::endl;
std::cout << Umu[0]<<std::endl;
std::cout << Umu[1]<<std::endl;
}
if ( nersc_csum != header.checksum ) {
std::cerr << " checksum mismatch " << std::endl;
std::cerr << " plaqs " << clone.plaquette << " " << header.plaquette << std::endl;
std::cerr << " trace " << clone.link_trace<< " " << header.link_trace<< std::endl;
std::cerr << " nersc_csum " <<std::hex<< nersc_csum << " " << header.checksum<< std::dec<< std::endl;
exit(0);
}
assert(fabs(clone.plaquette -header.plaquette ) < 1.0e-5 );
assert(fabs(clone.link_trace-header.link_trace) < 1.0e-6 );
assert(csum == header.checksum );
assert(nersc_csum == header.checksum );
std::cout<<GridLogMessage <<"NERSC Configuration "<<file<< " and plaquette, link trace, and checksum agree"<<std::endl;
}
}
template<class vsimd>
static inline void writeConfiguration(Lattice<iLorentzColourMatrix<vsimd> > &Umu,std::string file, int two_row,int bits32)
static inline void writeConfiguration(Lattice<iLorentzColourMatrix<vsimd> > &Umu,
std::string file,
int two_row,
int bits32)
{
typedef Lattice<iLorentzColourMatrix<vsimd> > GaugeField;
typedef iLorentzColourMatrix<vsimd> vobj;
typedef typename vobj::scalar_object sobj;
FieldMetaData header;
///////////////////////////////////////////
// Following should become arguments
NerscField header;
///////////////////////////////////////////
header.sequence_number = 1;
header.ensemble_id = "UKQCD";
header.ensemble_label = "DWF";
@ -425,45 +231,32 @@ namespace Grid {
GridBase *grid = Umu._grid;
NerscGrid(grid,header);
NerscStatistics<GaugeField>(Umu,header);
NerscMachineCharacteristics(header);
GridMetaData(grid,header);
assert(header.nd==4);
GaugeStatistics(Umu,header);
MachineCharacteristics(header);
uint32_t csum;
int offset;
truncate(file);
if ( two_row ) {
// Sod it -- always write 3x3 double
header.floating_point = std::string("IEEE64BIG");
header.data_type = std::string("4D_SU3_GAUGE_3x3");
GaugeSimpleUnmunger<fobj3D,sobj> munge;
offset = writeHeader(header,file);
header.floating_point = std::string("IEEE64BIG");
header.data_type = std::string("4D_SU3_GAUGE");
Nersc3x2unmunger<fobj2D,sobj> munge;
BinaryIO::Uint32Checksum<vobj,fobj2D>(Umu, munge,header.checksum);
offset = writeHeader(header,file);
#ifdef PARALLEL_WRITE
csum=BinaryIO::writeObjectParallel<vobj,fobj2D>(Umu,file,munge,offset,header.floating_point);
#else
csum=BinaryIO::writeObjectSerial<vobj,fobj2D>(Umu,file,munge,offset,header.floating_point);
#endif
} else {
header.floating_point = std::string("IEEE64BIG");
header.data_type = std::string("4D_SU3_GAUGE_3x3");
NerscSimpleUnmunger<fobj3D,sobj> munge;
BinaryIO::Uint32Checksum<vobj,fobj3D>(Umu, munge,header.checksum);
offset = writeHeader(header,file);
#ifdef PARALLEL_WRITE
csum=BinaryIO::writeObjectParallel<vobj,fobj3D>(Umu,file,munge,offset,header.floating_point);
#else
csum=BinaryIO::writeObjectSerial<vobj,fobj3D>(Umu,file,munge,offset,header.floating_point);
#endif
}
uint32_t nersc_csum,scidac_csuma,scidac_csumb;
BinaryIO::writeLatticeObject<vobj,fobj3D>(Umu,file,munge,offset,header.floating_point,
nersc_csum,scidac_csuma,scidac_csumb);
header.checksum = nersc_csum;
writeHeader(header,file);
std::cout<<GridLogMessage <<"Written NERSC Configuration on "<< file << " checksum "<<std::hex<<csum<< std::dec<<" plaq "<< header.plaquette <<std::endl;
std::cout<<GridLogMessage <<"Written NERSC Configuration on "<< file << " checksum "
<<std::hex<<header.checksum
<<std::dec<<" plaq "<< header.plaquette <<std::endl;
}
///////////////////////////////
// RNG state
///////////////////////////////
@ -472,19 +265,19 @@ namespace Grid {
typedef typename GridParallelRNG::RngStateType RngStateType;
// Following should become arguments
NerscField header;
FieldMetaData header;
header.sequence_number = 1;
header.ensemble_id = "UKQCD";
header.ensemble_label = "DWF";
GridBase *grid = parallel._grid;
NerscGrid(grid,header);
GridMetaData(grid,header);
assert(header.nd==4);
header.link_trace=0.0;
header.plaquette=0.0;
NerscMachineCharacteristics(header);
MachineCharacteristics(header);
uint32_t csum;
int offset;
#ifdef RNG_RANLUX
@ -502,15 +295,19 @@ namespace Grid {
truncate(file);
offset = writeHeader(header,file);
csum=BinaryIO::writeRNGSerial(serial,parallel,file,offset);
header.checksum = csum;
uint32_t nersc_csum,scidac_csuma,scidac_csumb;
BinaryIO::writeRNG(serial,parallel,file,offset,nersc_csum,scidac_csuma,scidac_csumb);
header.checksum = nersc_csum;
offset = writeHeader(header,file);
std::cout<<GridLogMessage <<"Written NERSC RNG STATE "<<file<< " checksum "<<std::hex<<csum<<std::dec<<std::endl;
std::cout<<GridLogMessage
<<"Written NERSC RNG STATE "<<file<< " checksum "
<<std::hex<<header.checksum
<<std::dec<<std::endl;
}
static inline void readRNGState(GridSerialRNG &serial,GridParallelRNG & parallel,NerscField& header,std::string file)
static inline void readRNGState(GridSerialRNG &serial,GridParallelRNG & parallel,FieldMetaData& header,std::string file)
{
typedef typename GridParallelRNG::RngStateType RngStateType;
@ -518,7 +315,7 @@ namespace Grid {
int offset = readHeader(file,grid,header);
NerscField clone(header);
FieldMetaData clone(header);
std::string format(header.floating_point);
std::string data_type(header.data_type);
@ -538,15 +335,19 @@ namespace Grid {
// depending on datatype, set up munger;
// munger is a function of <floating point, Real, data_type>
uint32_t csum=BinaryIO::readRNGSerial(serial,parallel,file,offset);
uint32_t nersc_csum,scidac_csuma,scidac_csumb;
BinaryIO::readRNG(serial,parallel,file,offset,nersc_csum,scidac_csuma,scidac_csumb);
assert(csum == header.checksum );
if ( nersc_csum != header.checksum ) {
std::cerr << "checksum mismatch "<<std::hex<< nersc_csum <<" "<<header.checksum<<std::dec<<std::endl;
exit(0);
}
assert(nersc_csum == header.checksum );
std::cout<<GridLogMessage <<"Read NERSC RNG file "<<file<< " format "<< data_type <<std::endl;
}
};
}}
#endif

2
lib/perfmon/PerfCount.cc
View File

@ -40,7 +40,7 @@ const PerformanceCounter::PerformanceCounterConfig PerformanceCounter::Performan
{ PERF_TYPE_HARDWARE, PERF_COUNT_HW_CPU_CYCLES , "CPUCYCLES.........." , INSTRUCTIONS},
{ PERF_TYPE_HARDWARE, PERF_COUNT_HW_INSTRUCTIONS , "INSTRUCTIONS......." , CPUCYCLES },
// 4
#ifdef AVX512
#ifdef KNL
{ PERF_TYPE_RAW, RawConfig(0x40,0x04), "ALL_LOADS..........", CPUCYCLES },
{ PERF_TYPE_RAW, RawConfig(0x01,0x04), "L1_MISS_LOADS......", L1D_READ_ACCESS },
{ PERF_TYPE_RAW, RawConfig(0x40,0x04), "ALL_LOADS..........", L1D_READ_ACCESS },

7
lib/qcd/action/fermion/Fermion.h
View File

@ -237,4 +237,11 @@ typedef ImprovedStaggeredFermion5D<StaggeredVec5dImplD> ImprovedStaggeredFermion
}}
////////////////////
// Scalar QED actions
// TODO: this needs to move to another header after rename to Fermion.h
////////////////////
#include <Grid/qcd/action/scalar/Scalar.h>
#include <Grid/qcd/action/gauge/Photon.h>
#endif

6
lib/qcd/action/fermion/FermionOperatorImpl.h
View File

@ -644,19 +644,16 @@ class StaggeredImpl : public PeriodicGaugeImpl<GaugeImplTypes<S, Representation:
INHERIT_GIMPL_TYPES(Gimpl);
template <typename vtype> using iImplScalar = iScalar<iScalar<iScalar<vtype> > >;
template <typename vtype> using iImplSpinor = iScalar<iScalar<iVector<vtype, Dimension> > >;
template <typename vtype> using iImplHalfSpinor = iScalar<iScalar<iVector<vtype, Dimension> > >;
template <typename vtype> using iImplDoubledGaugeField = iVector<iScalar<iMatrix<vtype, Dimension> >, Nds>;
template <typename vtype> using iImplPropagator = iScalar<iScalar<iMatrix<vtype, Dimension> > >;
typedef iImplScalar<Simd> SiteComplex;
typedef iImplSpinor<Simd> SiteSpinor;
typedef iImplHalfSpinor<Simd> SiteHalfSpinor;
typedef iImplDoubledGaugeField<Simd> SiteDoubledGaugeField;
typedef iImplPropagator<Simd> SitePropagator;
typedef Lattice<SiteComplex> ComplexField;
typedef Lattice<SiteSpinor> FermionField;
typedef Lattice<SiteDoubledGaugeField> DoubledGaugeField;
typedef Lattice<SitePropagator> PropagatorField;
@ -775,7 +772,6 @@ class StaggeredImpl : public PeriodicGaugeImpl<GaugeImplTypes<S, Representation:
INHERIT_GIMPL_TYPES(Gimpl);
template <typename vtype> using iImplScalar = iScalar<iScalar<iScalar<vtype> > >;
template <typename vtype> using iImplSpinor = iScalar<iScalar<iVector<vtype, Dimension> > >;
template <typename vtype> using iImplHalfSpinor = iScalar<iScalar<iVector<vtype, Dimension> > >;
template <typename vtype> using iImplDoubledGaugeField = iVector<iScalar<iMatrix<vtype, Dimension> >, Nds>;
@ -792,12 +788,10 @@ class StaggeredImpl : public PeriodicGaugeImpl<GaugeImplTypes<S, Representation:
typedef Lattice<SiteDoubledGaugeField> DoubledGaugeField;
typedef Lattice<SitePropagator> PropagatorField;
typedef iImplScalar<Simd> SiteComplex;
typedef iImplSpinor<Simd> SiteSpinor;
typedef iImplHalfSpinor<Simd> SiteHalfSpinor;
typedef Lattice<SiteComplex> ComplexField;
typedef Lattice<SiteSpinor> FermionField;
typedef SimpleCompressor<SiteSpinor> Compressor;

20
lib/qcd/action/gauge/GaugeImplTypes.h
View File

@ -40,12 +40,15 @@ namespace QCD {
typedef typename GImpl::Simd Simd; \
typedef typename GImpl::LinkField GaugeLinkField; \
typedef typename GImpl::Field GaugeField; \
typedef typename GImpl::ComplexField ComplexField;\
typedef typename GImpl::SiteField SiteGaugeField; \
typedef typename GImpl::SiteComplex SiteComplex; \
typedef typename GImpl::SiteLink SiteGaugeLink;
#define INHERIT_FIELD_TYPES(Impl) \
typedef typename Impl::Simd Simd; \
typedef typename Impl::SiteField SiteField; \
#define INHERIT_FIELD_TYPES(Impl) \
typedef typename Impl::Simd Simd; \
typedef typename Impl::ComplexField ComplexField; \
typedef typename Impl::SiteField SiteField; \
typedef typename Impl::Field Field;
// hardcodes the exponential approximation in the template
@ -53,14 +56,17 @@ template <class S, int Nrepresentation = Nc, int Nexp = 12 > class GaugeImplType
public:
typedef S Simd;
template <typename vtype> using iImplGaugeLink = iScalar<iScalar<iMatrix<vtype, Nrepresentation>>>;
template <typename vtype> using iImplGaugeField = iVector<iScalar<iMatrix<vtype, Nrepresentation>>, Nd>;
template <typename vtype> using iImplScalar = iScalar<iScalar<iScalar<vtype> > >;
template <typename vtype> using iImplGaugeLink = iScalar<iScalar<iMatrix<vtype, Nrepresentation> > >;
template <typename vtype> using iImplGaugeField = iVector<iScalar<iMatrix<vtype, Nrepresentation> >, Nd>;
typedef iImplScalar<Simd> SiteComplex;
typedef iImplGaugeLink<Simd> SiteLink;
typedef iImplGaugeField<Simd> SiteField;
typedef Lattice<SiteLink> LinkField;
typedef Lattice<SiteField> Field;
typedef Lattice<SiteComplex> ComplexField;
typedef Lattice<SiteLink> LinkField;
typedef Lattice<SiteField> Field;
// Guido: we can probably separate the types from the HMC functions
// this will create 2 kind of implementations

286
lib/qcd/action/gauge/Photon.h Normal file
View File

@ -0,0 +1,286 @@
/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: ./lib/qcd/action/gauge/Photon.h
Copyright (C) 2015
Author: Peter Boyle <paboyle@ph.ed.ac.uk>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#ifndef QCD_PHOTON_ACTION_H
#define QCD_PHOTON_ACTION_H
namespace Grid{
namespace QCD{
template <class S>
class QedGimpl
{
public:
typedef S Simd;
template <typename vtype>
using iImplGaugeLink = iScalar<iScalar<iScalar<vtype>>>;
template <typename vtype>
using iImplGaugeField = iVector<iScalar<iScalar<vtype>>, Nd>;
typedef iImplGaugeLink<Simd> SiteLink;
typedef iImplGaugeField<Simd> SiteField;
typedef SiteField SiteComplex;
typedef Lattice<SiteLink> LinkField;
typedef Lattice<SiteField> Field;
typedef Field ComplexField;
};
typedef QedGimpl<vComplex> QedGimplR;
template<class Gimpl>
class Photon
{
public:
INHERIT_GIMPL_TYPES(Gimpl);
GRID_SERIALIZABLE_ENUM(Gauge, undef, feynman, 1, coulomb, 2, landau, 3);
GRID_SERIALIZABLE_ENUM(ZmScheme, undef, qedL, 1, qedTL, 2);
public:
Photon(Gauge gauge, ZmScheme zmScheme);
virtual ~Photon(void) = default;
void FreePropagator(const GaugeField &in, GaugeField &out);
void MomentumSpacePropagator(const GaugeField &in, GaugeField &out);
void StochasticWeight(GaugeLinkField &weight);
void StochasticField(GaugeField &out, GridParallelRNG &rng);
void StochasticField(GaugeField &out, GridParallelRNG &rng,
const GaugeLinkField &weight);
private:
void invKHatSquared(GaugeLinkField &out);
void zmSub(GaugeLinkField &out);
private:
Gauge gauge_;
ZmScheme zmScheme_;
};
typedef Photon<QedGimplR> PhotonR;
template<class Gimpl>
Photon<Gimpl>::Photon(Gauge gauge, ZmScheme zmScheme)
: gauge_(gauge), zmScheme_(zmScheme)
{}
template<class Gimpl>
void Photon<Gimpl>::FreePropagator (const GaugeField &in,GaugeField &out)
{
FFT theFFT(in._grid);
GaugeField in_k(in._grid);
GaugeField prop_k(in._grid);
theFFT.FFT_all_dim(in_k,in,FFT::forward);
MomentumSpacePropagator(prop_k,in_k);
theFFT.FFT_all_dim(out,prop_k,FFT::backward);
}
template<class Gimpl>
void Photon<Gimpl>::invKHatSquared(GaugeLinkField &out)
{
GridBase *grid = out._grid;
GaugeLinkField kmu(grid), one(grid);
const unsigned int nd = grid->_ndimension;
std::vector<int> &l = grid->_fdimensions;
std::vector<int> zm(nd,0);
TComplex Tone = Complex(1.0,0.0);
TComplex Tzero= Complex(0.0,0.0);
one = Complex(1.0,0.0);
out = zero;
for(int mu = 0; mu < nd; mu++)
{
Real twoPiL = M_PI*2./l[mu];
LatticeCoordinate(kmu,mu);
kmu = 2.*sin(.5*twoPiL*kmu);
out = out + kmu*kmu;
}
pokeSite(Tone, out, zm);
out = one/out;
pokeSite(Tzero, out, zm);
}
template<class Gimpl>
void Photon<Gimpl>::zmSub(GaugeLinkField &out)
{
GridBase *grid = out._grid;
const unsigned int nd = grid->_ndimension;
switch (zmScheme_)
{
case ZmScheme::qedTL:
{
std::vector<int> zm(nd,0);
TComplex Tzero = Complex(0.0,0.0);
pokeSite(Tzero, out, zm);
break;
}
case ZmScheme::qedL:
{
LatticeInteger spNrm(grid), coor(grid);
GaugeLinkField z(grid);
spNrm = zero;
for(int d = 0; d < grid->_ndimension - 1; d++)
{
LatticeCoordinate(coor,d);
spNrm = spNrm + coor*coor;
}
out = where(spNrm == Integer(0), 0.*out, out);
break;
}
default:
break;
}
}
template<class Gimpl>
void Photon<Gimpl>::MomentumSpacePropagator(const GaugeField &in,
GaugeField &out)
{
GridBase *grid = out._grid;
LatticeComplex k2Inv(grid);
invKHatSquared(k2Inv);
zmSub(k2Inv);
out = in*k2Inv;
}
template<class Gimpl>
void Photon<Gimpl>::StochasticWeight(GaugeLinkField &weight)
{
auto *grid = dynamic_cast<GridCartesian *>(weight._grid);
const unsigned int nd = grid->_ndimension;
std::vector<int> latt_size = grid->_fdimensions;
Integer vol = 1;
for(int d = 0; d < nd; d++)
{
vol = vol * latt_size[d];
}
invKHatSquared(weight);
weight = sqrt(vol*real(weight));
zmSub(weight);
}
template<class Gimpl>
void Photon<Gimpl>::StochasticField(GaugeField &out, GridParallelRNG &rng)
{
auto *grid = dynamic_cast<GridCartesian *>(out._grid);
GaugeLinkField weight(grid);
StochasticWeight(weight);
StochasticField(out, rng, weight);
}
template<class Gimpl>
void Photon<Gimpl>::StochasticField(GaugeField &out, GridParallelRNG &rng,
const GaugeLinkField &weight)
{
auto *grid = dynamic_cast<GridCartesian *>(out._grid);
const unsigned int nd = grid->_ndimension;
GaugeLinkField r(grid);
GaugeField aTilde(grid);
FFT fft(grid);
for(int mu = 0; mu < nd; mu++)
{
gaussian(rng, r);
r = weight*r;
pokeLorentz(aTilde, r, mu);
}
fft.FFT_all_dim(out, aTilde, FFT::backward);
out = real(out);
}
// template<class Gimpl>
// void Photon<Gimpl>::FeynmanGaugeMomentumSpacePropagator_L(GaugeField &out,
// const GaugeField &in)
// {
//
// FeynmanGaugeMomentumSpacePropagator_TL(out,in);
//
// GridBase *grid = out._grid;
// LatticeInteger coor(grid);
// GaugeField zz(grid); zz=zero;
//
// // xyzt
// for(int d = 0; d < grid->_ndimension-1;d++){
// LatticeCoordinate(coor,d);
// out = where(coor==Integer(0),zz,out);
// }
// }
//
// template<class Gimpl>
// void Photon<Gimpl>::FeynmanGaugeMomentumSpacePropagator_TL(GaugeField &out,
// const GaugeField &in)
// {
//
// // what type LatticeComplex
// GridBase *grid = out._grid;
// int nd = grid->_ndimension;
//
// typedef typename GaugeField::vector_type vector_type;
// typedef typename GaugeField::scalar_type ScalComplex;
// typedef Lattice<iSinglet<vector_type> > LatComplex;
//
// std::vector<int> latt_size = grid->_fdimensions;
//
// LatComplex denom(grid); denom= zero;
// LatComplex one(grid); one = ScalComplex(1.0,0.0);
// LatComplex kmu(grid);
//
// ScalComplex ci(0.0,1.0);
// // momphase = n * 2pi / L
// for(int mu=0;mu<Nd;mu++) {
//
// LatticeCoordinate(kmu,mu);
//
// RealD TwoPiL = M_PI * 2.0/ latt_size[mu];
//
// kmu = TwoPiL * kmu ;
//
// denom = denom + 4.0*sin(kmu*0.5)*sin(kmu*0.5); // Wilson term
// }
// std::vector<int> zero_mode(nd,0);
// TComplexD Tone = ComplexD(1.0,0.0);
// TComplexD Tzero= ComplexD(0.0,0.0);
//
// pokeSite(Tone,denom,zero_mode);
//
// denom= one/denom;
//
// pokeSite(Tzero,denom,zero_mode);
//
// out = zero;
// out = in*denom;
// };
}}
#endif

12
lib/qcd/action/gauge/WilsonGaugeAction.h
View File

@ -71,14 +71,18 @@ class WilsonGaugeAction : public Action<typename Gimpl::GaugeField> {
RealD factor = 0.5 * beta / RealD(Nc);
GaugeLinkField Umu(U._grid);
//GaugeLinkField Umu(U._grid);
GaugeLinkField dSdU_mu(U._grid);
for (int mu = 0; mu < Nd; mu++) {
Umu = PeekIndex<LorentzIndex>(U, mu);
//Umu = PeekIndex<LorentzIndex>(U, mu);
// Staple in direction mu
WilsonLoops<Gimpl>::Staple(dSdU_mu, U, mu);
dSdU_mu = Ta(Umu * dSdU_mu) * factor;
//WilsonLoops<Gimpl>::Staple(dSdU_mu, U, mu);
//dSdU_mu = Ta(Umu * dSdU_mu) * factor;
WilsonLoops<Gimpl>::StapleMult(dSdU_mu, U, mu);
dSdU_mu = Ta(dSdU_mu) * factor;
PokeIndex<LorentzIndex>(dSdU, dSdU_mu, mu);
}

5
lib/qcd/action/scalar/Scalar.h
View File

@ -31,6 +31,7 @@ directory
#include <Grid/qcd/action/scalar/ScalarImpl.h>
#include <Grid/qcd/action/scalar/ScalarAction.h>
#include <Grid/qcd/action/scalar/ScalarInteractionAction.h>
namespace Grid {
namespace QCD {
@ -39,6 +40,10 @@ namespace QCD {
typedef ScalarAction<ScalarImplF> ScalarActionF;
typedef ScalarAction<ScalarImplD> ScalarActionD;
template <int Colours, int Dimensions> using ScalarAdjActionR = ScalarInteractionAction<ScalarNxNAdjImplR<Colours>, Dimensions>;
template <int Colours, int Dimensions> using ScalarAdjActionF = ScalarInteractionAction<ScalarNxNAdjImplF<Colours>, Dimensions>;
template <int Colours, int Dimensions> using ScalarAdjActionD = ScalarInteractionAction<ScalarNxNAdjImplD<Colours>, Dimensions>;
}
}

61
lib/qcd/action/scalar/ScalarAction.h
View File

@ -6,10 +6,10 @@
Copyright (C) 2015
Author: Azusa Yamaguchi <ayamaguc@staffmail.ed.ac.uk>
Author: Peter Boyle <paboyle@ph.ed.ac.uk>
Author: neo <cossu@post.kek.jp>
Author: paboyle <paboyle@ph.ed.ac.uk>
Author: Azusa Yamaguchi <ayamaguc@staffmail.ed.ac.uk>
Author: Peter Boyle <paboyle@ph.ed.ac.uk>
Author: neo <cossu@post.kek.jp>
Author: paboyle <paboyle@ph.ed.ac.uk>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
@ -35,50 +35,49 @@ directory
namespace Grid {
// FIXME drop the QCD namespace everywhere here
template <class Impl>
class ScalarAction : public QCD::Action<typename Impl::Field> {
public:
template <class Impl>
class ScalarAction : public QCD::Action<typename Impl::Field> {
public:
INHERIT_FIELD_TYPES(Impl);
private:
private:
RealD mass_square;
RealD lambda;
public:
ScalarAction(RealD ms, RealD l) : mass_square(ms), lambda(l){};
virtual std::string LogParameters(){
public:
ScalarAction(RealD ms, RealD l) : mass_square(ms), lambda(l) {}
virtual std::string LogParameters() {
std::stringstream sstream;
sstream << GridLogMessage << "[ScalarAction] lambda : " << lambda << std::endl;
sstream << GridLogMessage << "[ScalarAction] mass_square : " << mass_square << std::endl;
return sstream.str();
}
virtual std::string action_name(){return "ScalarAction";}
virtual void refresh(const Field &U,
GridParallelRNG &pRNG){}; // noop as no pseudoferms
virtual std::string action_name() {return "ScalarAction";}
virtual void refresh(const Field &U, GridParallelRNG &pRNG) {} // noop as no pseudoferms
virtual RealD S(const Field &p) {
return (mass_square * 0.5 + QCD::Nd) * ScalarObs<Impl>::sumphisquared(p) +
(lambda / 24.) * ScalarObs<Impl>::sumphifourth(p) +
ScalarObs<Impl>::sumphider(p);
(lambda / 24.) * ScalarObs<Impl>::sumphifourth(p) +
ScalarObs<Impl>::sumphider(p);
};
virtual void deriv(const Field &p,
Field &force) {
Field &force) {
Field tmp(p._grid);
Field p2(p._grid);
ScalarObs<Impl>::phisquared(p2, p);
tmp = -(Cshift(p, 0, -1) + Cshift(p, 0, 1));
for (int mu = 1; mu < QCD::Nd; mu++) tmp -= Cshift(p, mu, -1) + Cshift(p, mu, 1);
force=+(mass_square + 2. * QCD::Nd) * p + (lambda / 6.) * p2 * p + tmp;
};
};
} // Grid
force =+(mass_square + 2. * QCD::Nd) * p + (lambda / 6.) * p2 * p + tmp;
}
};
} // namespace Grid
#endif // SCALAR_ACTION_H

144
lib/qcd/action/scalar/ScalarImpl.h
View File

@ -5,96 +5,158 @@
namespace Grid {
//namespace QCD {
template <class S>
class ScalarImplTypes {
public:
template <class S>
class ScalarImplTypes {
public:
typedef S Simd;
template <typename vtype>
using iImplField = iScalar<iScalar<iScalar<vtype> > >;
typedef iImplField<Simd> SiteField;
typedef SiteField SitePropagator;
typedef SiteField SiteComplex;
typedef Lattice<SiteField> Field;
typedef Field ComplexField;
typedef Field FermionField;
typedef Field PropagatorField;
static inline void generate_momenta(Field& P, GridParallelRNG& pRNG){
gaussian(pRNG, P);
}
static inline Field projectForce(Field& P){return P;}
static inline void update_field(Field& P, Field& U, double ep){
static inline void update_field(Field& P, Field& U, double ep) {
U += P*ep;
}
static inline RealD FieldSquareNorm(Field& U){
static inline RealD FieldSquareNorm(Field& U) {
return (- sum(trace(U*U))/2.0);
}
static inline void HotConfiguration(GridParallelRNG &pRNG, Field &U) {
gaussian(pRNG, U);
}
static inline void TepidConfiguration(GridParallelRNG &pRNG, Field &U) {
gaussian(pRNG, U);
}
static inline void ColdConfiguration(GridParallelRNG &pRNG, Field &U) {
U = 1.0;
}
static void MomentumSpacePropagator(Field &out, RealD m)
{
GridBase *grid = out._grid;
Field kmu(grid), one(grid);
const unsigned int nd = grid->_ndimension;
std::vector<int> &l = grid->_fdimensions;
one = Complex(1.0,0.0);
out = m*m;
for(int mu = 0; mu < nd; mu++)
{
Real twoPiL = M_PI*2./l[mu];
LatticeCoordinate(kmu,mu);
kmu = 2.*sin(.5*twoPiL*kmu);
out = out + kmu*kmu;
}
out = one/out;
}
static void FreePropagator(const Field &in, Field &out,
const Field &momKernel)
{
FFT fft((GridCartesian *)in._grid);
Field inFT(in._grid);
fft.FFT_all_dim(inFT, in, FFT::forward);
inFT = inFT*momKernel;
fft.FFT_all_dim(out, inFT, FFT::backward);
}
static void FreePropagator(const Field &in, Field &out, RealD m)
{
Field momKernel(in._grid);
MomentumSpacePropagator(momKernel, m);
FreePropagator(in, out, momKernel);
}
};
template <class S, unsigned int N>
class ScalarMatrixImplTypes {
class ScalarAdjMatrixImplTypes {
public:
typedef S Simd;
typedef QCD::SU<N> Group;
template <typename vtype>
using iImplField = iScalar<iScalar<iMatrix<vtype, N> > >;
using iImplField = iScalar<iScalar<iMatrix<vtype, N>>>;
template <typename vtype>
using iImplComplex = iScalar<iScalar<iScalar<vtype>>>;
typedef iImplField<Simd> SiteField;
typedef SiteField SitePropagator;
typedef iImplComplex<Simd> SiteComplex;
typedef iImplField<Simd> SiteField;
typedef Lattice<SiteField> Field;
static inline void generate_momenta(Field& P, GridParallelRNG& pRNG){
gaussian(pRNG, P);
typedef Lattice<SiteField> Field;
typedef Lattice<SiteComplex> ComplexField;
typedef Field FermionField;
typedef Field PropagatorField;
static inline void generate_momenta(Field& P, GridParallelRNG& pRNG) {
Group::GaussianFundamentalLieAlgebraMatrix(pRNG, P);
}
static inline Field projectForce(Field& P){return P;}
static inline void update_field(Field& P, Field& U, double ep){
static inline Field projectForce(Field& P) {return P;}
static inline void update_field(Field& P, Field& U, double ep) {
U += P*ep;
}
static inline RealD FieldSquareNorm(Field& U){
return (TensorRemove(- sum(trace(U*U))*0.5).real());
static inline RealD FieldSquareNorm(Field& U) {
return (TensorRemove(sum(trace(U*U))).real());
}
static inline void HotConfiguration(GridParallelRNG &pRNG, Field &U) {
gaussian(pRNG, U);
Group::GaussianFundamentalLieAlgebraMatrix(pRNG, U);
}
static inline void TepidConfiguration(GridParallelRNG &pRNG, Field &U) {
gaussian(pRNG, U);
Group::GaussianFundamentalLieAlgebraMatrix(pRNG, U, 0.01);
}
static inline void ColdConfiguration(GridParallelRNG &pRNG, Field &U) {
U = 1.0;
U = zero;
}
};
typedef ScalarImplTypes<vReal> ScalarImplR;
typedef ScalarImplTypes<vRealF> ScalarImplF;
typedef ScalarImplTypes<vRealD> ScalarImplD;
typedef ScalarImplTypes<vComplex> ScalarImplCR;
typedef ScalarImplTypes<vComplexF> ScalarImplCF;
typedef ScalarImplTypes<vComplexD> ScalarImplCD;
// Hardcoding here the size of the matrices
typedef ScalarAdjMatrixImplTypes<vComplex, QCD::Nc> ScalarAdjImplR;
typedef ScalarAdjMatrixImplTypes<vComplexF, QCD::Nc> ScalarAdjImplF;
typedef ScalarAdjMatrixImplTypes<vComplexD, QCD::Nc> ScalarAdjImplD;
template <int Colours > using ScalarNxNAdjImplR = ScalarAdjMatrixImplTypes<vComplex, Colours >;
template <int Colours > using ScalarNxNAdjImplF = ScalarAdjMatrixImplTypes<vComplexF, Colours >;
template <int Colours > using ScalarNxNAdjImplD = ScalarAdjMatrixImplTypes<vComplexD, Colours >;
//}
}
//}
}
#endif

134
lib/qcd/action/scalar/ScalarInteractionAction.h
View File

@ -6,10 +6,7 @@
Copyright (C) 2015
Author: Azusa Yamaguchi <ayamaguc@staffmail.ed.ac.uk>
Author: Peter Boyle <paboyle@ph.ed.ac.uk>
Author: neo <cossu@post.kek.jp>
Author: paboyle <paboyle@ph.ed.ac.uk>
Author: Guido Cossu <guido,cossu@ed.ac.uk>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
@ -30,55 +27,122 @@ directory
*************************************************************************************/
/* END LEGAL */
#ifndef SCALAR_ACTION_H
#define SCALAR_ACTION_H
#ifndef SCALAR_INT_ACTION_H
#define SCALAR_INT_ACTION_H
// Note: this action can completely absorb the ScalarAction for real float fields
// use the scalarObjs to generalise the structure
namespace Grid {
// FIXME drop the QCD namespace everywhere here
template <class Impl>
template <class Impl, int Ndim >
class ScalarInteractionAction : public QCD::Action<typename Impl::Field> {
public:
INHERIT_FIELD_TYPES(Impl);
private:
RealD mass_square;
RealD lambda;
public:
ScalarAction(RealD ms, RealD l) : mass_square(ms), lambda(l){};
virtual std::string LogParameters(){
typedef typename Field::vector_object vobj;
typedef CartesianStencil<vobj,vobj> Stencil;
SimpleCompressor<vobj> compressor;
int npoint = 2*Ndim;
std::vector<int> directions;// = {0,1,2,3,0,1,2,3}; // forcing 4 dimensions
std::vector<int> displacements;// = {1,1,1,1, -1,-1,-1,-1};
public:
ScalarInteractionAction(RealD ms, RealD l) : mass_square(ms), lambda(l), displacements(2*Ndim,0), directions(2*Ndim,0){
for (int mu = 0 ; mu < Ndim; mu++){
directions[mu] = mu; directions[mu+Ndim] = mu;
displacements[mu] = 1; displacements[mu+Ndim] = -1;
}
}
virtual std::string LogParameters() {
std::stringstream sstream;
sstream << GridLogMessage << "[ScalarAction] lambda : " << lambda << std::endl;
sstream << GridLogMessage << "[ScalarAction] mass_square : " << mass_square << std::endl;
return sstream.str();
}
virtual std::string action_name(){return "ScalarAction";}
virtual void refresh(const Field &U,
GridParallelRNG &pRNG){}; // noop as no pseudoferms
virtual std::string action_name() {return "ScalarAction";}
virtual void refresh(const Field &U, GridParallelRNG &pRNG) {}
virtual RealD S(const Field &p) {
return (mass_square * 0.5 + QCD::Nd) * ScalarObs<Impl>::sumphisquared(p) +
(lambda / 24.) * ScalarObs<Impl>::sumphifourth(p) +
ScalarObs<Impl>::sumphider(p);
assert(p._grid->Nd() == Ndim);
static Stencil phiStencil(p._grid, npoint, 0, directions, displacements);
phiStencil.HaloExchange(p, compressor);
Field action(p._grid), pshift(p._grid), phisquared(p._grid);
phisquared = p*p;
action = (2.0*Ndim + mass_square)*phisquared - lambda/24.*phisquared*phisquared;
for (int mu = 0; mu < Ndim; mu++) {
// pshift = Cshift(p, mu, +1); // not efficient, implement with stencils
parallel_for (int i = 0; i < p._grid->oSites(); i++) {
int permute_type;
StencilEntry *SE;
vobj temp2;
const vobj *temp, *t_p;
SE = phiStencil.GetEntry(permute_type, mu, i);
t_p = &p._odata[i];
if ( SE->_is_local ) {
temp = &p._odata[SE->_offset];
if ( SE->_permute ) {
permute(temp2, *temp, permute_type);
action._odata[i] -= temp2*(*t_p) + (*t_p)*temp2;
} else {
action._odata[i] -= (*temp)*(*t_p) + (*t_p)*(*temp);
}
} else {
action._odata[i] -= phiStencil.CommBuf()[SE->_offset]*(*t_p) + (*t_p)*phiStencil.CommBuf()[SE->_offset];
}
}
// action -= pshift*p + p*pshift;
}
// NB the trace in the algebra is normalised to 1/2
// minus sign coming from the antihermitian fields
return -(TensorRemove(sum(trace(action)))).real();
};
virtual void deriv(const Field &p,
Field &force) {
Field tmp(p._grid);
Field p2(p._grid);
ScalarObs<Impl>::phisquared(p2, p);
tmp = -(Cshift(p, 0, -1) + Cshift(p, 0, 1));
for (int mu = 1; mu < QCD::Nd; mu++) tmp -= Cshift(p, mu, -1) + Cshift(p, mu, 1);
virtual void deriv(const Field &p, Field &force) {
assert(p._grid->Nd() == Ndim);
force = (2.0*Ndim + mass_square)*p - lambda/12.*p*p*p;
// move this outside
static Stencil phiStencil(p._grid, npoint, 0, directions, displacements);
phiStencil.HaloExchange(p, compressor);
force=+(mass_square + 2. * QCD::Nd) * p + (lambda / 6.) * p2 * p + tmp;
};
//for (int mu = 0; mu < QCD::Nd; mu++) force -= Cshift(p, mu, -1) + Cshift(p, mu, 1);
for (int point = 0; point < npoint; point++) {
parallel_for (int i = 0; i < p._grid->oSites(); i++) {
const vobj *temp;
vobj temp2;
int permute_type;
StencilEntry *SE;
SE = phiStencil.GetEntry(permute_type, point, i);
if ( SE->_is_local ) {
temp = &p._odata[SE->_offset];
if ( SE->_permute ) {
permute(temp2, *temp, permute_type);
force._odata[i] -= temp2;
} else {
force._odata[i] -= *temp;
}
} else {
force._odata[i] -= phiStencil.CommBuf()[SE->_offset];
}
}
}
}
};
} // Grid
} // namespace Grid
#endif // SCALAR_ACTION_H
#endif // SCALAR_INT_ACTION_H

6
lib/qcd/hmc/GenericHMCrunner.h
View File

@ -207,6 +207,12 @@ using GenericHMCRunnerTemplate = HMCWrapperTemplate<Implementation, Integrator,
typedef HMCWrapperTemplate<ScalarImplR, MinimumNorm2, ScalarFields>
ScalarGenericHMCRunner;
typedef HMCWrapperTemplate<ScalarAdjImplR, MinimumNorm2, ScalarMatrixFields>
ScalarAdjGenericHMCRunner;
template <int Colours>
using ScalarNxNAdjGenericHMCRunner = HMCWrapperTemplate < ScalarNxNAdjImplR<Colours>, MinimumNorm2, ScalarNxNMatrixFields<Colours> >;
} // namespace QCD
} // namespace Grid

2
lib/qcd/hmc/HMC.h
View File

@ -76,7 +76,7 @@ struct HMCparameters: Serializable {
template < class ReaderClass >
void initialize(Reader<ReaderClass> &TheReader){
std::cout << "Reading HMC\n";
std::cout << GridLogMessage << "Reading HMC\n";
read(TheReader, "HMC", *this);
}

3
lib/qcd/hmc/HMCResourceManager.h
View File

@ -253,6 +253,7 @@ class HMCResourceManager {
template<class T, class... Types>
void AddObservable(Types&&... Args){
ObservablesList.push_back(std::unique_ptr<T>(new T(std::forward<Types>(Args)...)));
ObservablesList.back()->print_parameters();
}
std::vector<HmcObservable<typename ImplementationPolicy::Field>* > GetObservables(){
@ -297,4 +298,4 @@ private:
}
}
#endif // HMC_RESOURCE_MANAGER_H
#endif // HMC_RESOURCE_MANAGER_H

42
lib/qcd/hmc/checkpointers/BinaryCheckpointer.h
View File

@ -62,36 +62,50 @@ class BinaryHmcCheckpointer : public BaseHmcCheckpointer<Impl> {
fout.close();
}
void TrajectoryComplete(int traj, Field &U, GridSerialRNG &sRNG,
GridParallelRNG &pRNG) {
void TrajectoryComplete(int traj, Field &U, GridSerialRNG &sRNG, GridParallelRNG &pRNG) {
if ((traj % Params.saveInterval) == 0) {
std::string config, rng;
this->build_filenames(traj, Params, config, rng);
BinaryIO::BinarySimpleUnmunger<sobj_double, sobj> munge;
uint32_t nersc_csum;
uint32_t scidac_csuma;
uint32_t scidac_csumb;
BinarySimpleUnmunger<sobj_double, sobj> munge;
truncate(rng);
BinaryIO::writeRNGSerial(sRNG, pRNG, rng, 0);
BinaryIO::writeRNG(sRNG, pRNG, rng, 0,nersc_csum,scidac_csuma,scidac_csumb);
truncate(config);
uint32_t csum = BinaryIO::writeObjectParallel<vobj, sobj_double>(
U, config, munge, 0, Params.format);
BinaryIO::writeLatticeObject<vobj, sobj_double>(U, config, munge, 0, Params.format,
nersc_csum,scidac_csuma,scidac_csumb);
std::cout << GridLogMessage << "Written Binary Configuration " << config
<< " checksum " << std::hex << csum << std::dec << std::endl;
<< " checksum " << std::hex
<< nersc_csum <<"/"
<< scidac_csuma <<"/"
<< scidac_csumb
<< std::dec << std::endl;
}
};
void CheckpointRestore(int traj, Field &U, GridSerialRNG &sRNG,
GridParallelRNG &pRNG) {
void CheckpointRestore(int traj, Field &U, GridSerialRNG &sRNG, GridParallelRNG &pRNG) {
std::string config, rng;
this->build_filenames(traj, Params, config, rng);
BinaryIO::BinarySimpleMunger<sobj_double, sobj> munge;
BinaryIO::readRNGSerial(sRNG, pRNG, rng, 0);
uint32_t csum = BinaryIO::readObjectParallel<vobj, sobj_double>(
U, config, munge, 0, Params.format);
BinarySimpleMunger<sobj_double, sobj> munge;
uint32_t nersc_csum;
uint32_t scidac_csuma;
uint32_t scidac_csumb;
BinaryIO::readRNG(sRNG, pRNG, rng, 0,nersc_csum,scidac_csuma,scidac_csumb);
BinaryIO::readLatticeObject<vobj, sobj_double>(U, config, munge, 0, Params.format,
nersc_csum,scidac_csuma,scidac_csumb);
std::cout << GridLogMessage << "Read Binary Configuration " << config
<< " checksum " << std::hex << csum << std::dec << std::endl;
<< " checksums " << std::hex << nersc_csum<<"/"<<scidac_csuma<<"/"<<scidac_csumb
<< std::dec << std::endl;
};
};
}

38
lib/qcd/hmc/checkpointers/ILDGCheckpointer.h
View File

@ -54,9 +54,9 @@ class ILDGHmcCheckpointer : public BaseHmcCheckpointer<Implementation> {
// check here that the format is valid
int ieee32big = (Params.format == std::string("IEEE32BIG"));
int ieee32 = (Params.format == std::string("IEEE32"));
int ieee32 = (Params.format == std::string("IEEE32"));
int ieee64big = (Params.format == std::string("IEEE64BIG"));
int ieee64 = (Params.format == std::string("IEEE64"));
int ieee64 = (Params.format == std::string("IEEE64"));
if (!(ieee64big || ieee32 || ieee32big || ieee64)) {
std::cout << GridLogError << "Unrecognized file format " << Params.format
@ -74,13 +74,20 @@ class ILDGHmcCheckpointer : public BaseHmcCheckpointer<Implementation> {
if ((traj % Params.saveInterval) == 0) {
std::string config, rng;
this->build_filenames(traj, Params, config, rng);
ILDGIO IO(config, ILDGwrite);
BinaryIO::writeRNGSerial(sRNG, pRNG, rng, 0);
uint32_t csum = IO.writeConfiguration(U, Params.format);
uint32_t nersc_csum,scidac_csuma,scidac_csumb;
BinaryIO::writeRNG(sRNG, pRNG, rng, 0,nersc_csum,scidac_csuma,scidac_csumb);
IldgWriter _IldgWriter;
_IldgWriter.open(config);
_IldgWriter.writeConfiguration(U, traj, config, config);
_IldgWriter.close();
std::cout << GridLogMessage << "Written ILDG Configuration on " << config
<< " checksum " << std::hex << csum << std::dec << std::endl;
<< " checksum " << std::hex
<< nersc_csum<<"/"
<< scidac_csuma<<"/"
<< scidac_csumb
<< std::dec << std::endl;
}
};
@ -89,12 +96,21 @@ class ILDGHmcCheckpointer : public BaseHmcCheckpointer<Implementation> {
std::string config, rng;
this->build_filenames(traj, Params, config, rng);
ILDGIO IO(config, ILDGread);
BinaryIO::readRNGSerial(sRNG, pRNG, rng, 0);
uint32_t csum = IO.readConfiguration(U); // format from the header
uint32_t nersc_csum,scidac_csuma,scidac_csumb;
BinaryIO::readRNG(sRNG, pRNG, rng, 0,nersc_csum,scidac_csuma,scidac_csumb);
FieldMetaData header;
IldgReader _IldgReader;
_IldgReader.open(config);
_IldgReader.readConfiguration(U,header); // format from the header
_IldgReader.close();
std::cout << GridLogMessage << "Read ILDG Configuration from " << config
<< " checksum " << std::hex << csum << std::dec << std::endl;
<< " checksum " << std::hex
<< nersc_csum<<"/"
<< scidac_csuma<<"/"
<< scidac_csumb
<< std::dec << std::endl;
};
};
}

2
lib/qcd/hmc/checkpointers/NerscCheckpointer.h
View File

@ -70,7 +70,7 @@ class NerscHmcCheckpointer : public BaseHmcCheckpointer<Gimpl> {
std::string config, rng;
this->build_filenames(traj, Params, config, rng);
NerscField header;
FieldMetaData header;
NerscIO::readRNGState(sRNG, pRNG, header, rng);
NerscIO::readConfiguration(U, header, config);
};

5
lib/qcd/representations/hmc_types.h
View File

@ -62,7 +62,10 @@ class Representations {
typedef Representations<FundamentalRepresentation> NoHirep;
typedef Representations<EmptyRep<typename ScalarImplR::Field> > ScalarFields;
//typedef Representations<EmptyRep<typename ScalarMatrixImplR::Field> > ScalarMatrixFields;
typedef Representations<EmptyRep<typename ScalarAdjImplR::Field> > ScalarMatrixFields;
template < int Colours>
using ScalarNxNMatrixFields = Representations<EmptyRep<typename ScalarNxNAdjImplR<Colours>::Field> >;
// Helper classes to access the elements
// Strips the first N parameters from the tuple

102
lib/qcd/smearing/WilsonFlow.h
View File

@ -36,20 +36,23 @@ namespace QCD {
template <class Gimpl>
class WilsonFlow: public Smear<Gimpl>{
unsigned int Nstep;
RealD epsilon;
unsigned int measure_interval;
mutable RealD epsilon, taus;
mutable WilsonGaugeAction<Gimpl> SG;
void evolve_step(typename Gimpl::GaugeField&) const;
void evolve_step_adaptive(typename Gimpl::GaugeField&, RealD);
RealD tau(unsigned int t)const {return epsilon*(t+1.0); }
public:
INHERIT_GIMPL_TYPES(Gimpl)
explicit WilsonFlow(unsigned int Nstep, RealD epsilon):
explicit WilsonFlow(unsigned int Nstep, RealD epsilon, unsigned int interval = 1):
Nstep(Nstep),
epsilon(epsilon),
measure_interval(interval),
SG(WilsonGaugeAction<Gimpl>(3.0)) {
// WilsonGaugeAction with beta 3.0
assert(epsilon > 0.0);
@ -72,7 +75,9 @@ class WilsonFlow: public Smear<Gimpl>{
// undefined for WilsonFlow
}
void smear_adaptive(GaugeField&, const GaugeField&, RealD maxTau);
RealD energyDensityPlaquette(unsigned int step, const GaugeField& U) const;
RealD energyDensityPlaquette(const GaugeField& U) const;
};
@ -98,23 +103,110 @@ void WilsonFlow<Gimpl>::evolve_step(typename Gimpl::GaugeField &U) const{
Gimpl::update_field(Z, U, -2.0*epsilon); // V(t+e) = exp(ep*Z)*W2
}
template <class Gimpl>
void WilsonFlow<Gimpl>::evolve_step_adaptive(typename Gimpl::GaugeField &U, RealD maxTau) {
if (maxTau - taus < epsilon){
epsilon = maxTau-taus;
}
//std::cout << GridLogMessage << "Integration epsilon : " << epsilon << std::endl;
GaugeField Z(U._grid);
GaugeField Zprime(U._grid);
GaugeField tmp(U._grid), Uprime(U._grid);
Uprime = U;
SG.deriv(U, Z);
Zprime = -Z;
Z *= 0.25; // Z0 = 1/4 * F(U)
Gimpl::update_field(Z, U, -2.0*epsilon); // U = W1 = exp(ep*Z0)*W0
Z *= -17.0/8.0;
SG.deriv(U, tmp); Z += tmp; // -17/32*Z0 +Z1
Zprime += 2.0*tmp;
Z *= 8.0/9.0; // Z = -17/36*Z0 +8/9*Z1
Gimpl::update_field(Z, U, -2.0*epsilon); // U_= W2 = exp(ep*Z)*W1
Z *= -4.0/3.0;
SG.deriv(U, tmp); Z += tmp; // 4/3*(17/36*Z0 -8/9*Z1) +Z2
Z *= 3.0/4.0; // Z = 17/36*Z0 -8/9*Z1 +3/4*Z2
Gimpl::update_field(Z, U, -2.0*epsilon); // V(t+e) = exp(ep*Z)*W2
// Ramos
Gimpl::update_field(Zprime, Uprime, -2.0*epsilon); // V'(t+e) = exp(ep*Z')*W0
// Compute distance as norm^2 of the difference
GaugeField diffU = U - Uprime;
RealD diff = norm2(diffU);
// adjust integration step
taus += epsilon;
//std::cout << GridLogMessage << "Adjusting integration step with distance: " << diff << std::endl;
epsilon = epsilon*0.95*std::pow(1e-4/diff,1./3.);
//std::cout << GridLogMessage << "New epsilon : " << epsilon << std::endl;
}
template <class Gimpl>
RealD WilsonFlow<Gimpl>::energyDensityPlaquette(unsigned int step, const GaugeField& U) const {
RealD td = tau(step);
return 2.0 * td * td * SG.S(U)/U._grid->gSites();
}
template <class Gimpl>
RealD WilsonFlow<Gimpl>::energyDensityPlaquette(const GaugeField& U) const {
return 2.0 * taus * taus * SG.S(U)/U._grid->gSites();
}
//#define WF_TIMING
template <class Gimpl>
void WilsonFlow<Gimpl>::smear(GaugeField& out, const GaugeField& in) const {
out = in;
for (unsigned int step = 0; step < Nstep; step++) {
for (unsigned int step = 1; step <= Nstep; step++) {
auto start = std::chrono::high_resolution_clock::now();
evolve_step(out);
auto end = std::chrono::high_resolution_clock::now();
std::chrono::duration<double> diff = end - start;
#ifdef WF_TIMING
std::cout << "Time to evolve " << diff.count() << " s\n";
#endif
std::cout << GridLogMessage << "[WilsonFlow] Energy density (plaq) : "
<< step << " "
<< step << " "
<< energyDensityPlaquette(step,out) << std::endl;
if( step % measure_interval == 0){
std::cout << GridLogMessage << "[WilsonFlow] Top. charge : "
<< step << " "
<< WilsonLoops<PeriodicGimplR>::TopologicalCharge(out) << std::endl;
}
}
}
template <class Gimpl>
void WilsonFlow<Gimpl>::smear_adaptive(GaugeField& out, const GaugeField& in, RealD maxTau){
out = in;
taus = epsilon;
unsigned int step = 0;
do{
step++;
//std::cout << GridLogMessage << "Evolution time :"<< taus << std::endl;
evolve_step_adaptive(out, maxTau);
std::cout << GridLogMessage << "[WilsonFlow] Energy density (plaq) : "
<< step << " "
<< energyDensityPlaquette(out) << std::endl;
if( step % measure_interval == 0){
std::cout << GridLogMessage << "[WilsonFlow] Top. charge : "
<< step << " "
<< WilsonLoops<PeriodicGimplR>::TopologicalCharge(out) << std::endl;
}
} while (taus < maxTau);
}
} // namespace QCD
} // namespace Grid

188
lib/qcd/utils/GaugeFix.h Normal file
View File

@ -0,0 +1,188 @@
/*************************************************************************************
grid` physics library, www.github.com/paboyle/Grid
Copyright (C) 2015
Author: Azusa Yamaguchi <ayamaguc@staffmail.ed.ac.uk>
Author: Peter Boyle <paboyle@ph.ed.ac.uk>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
//#include <Grid/Grid.h>
using namespace Grid;
using namespace Grid::QCD;
template <class Gimpl>
class FourierAcceleratedGaugeFixer : public Gimpl {
public:
INHERIT_GIMPL_TYPES(Gimpl);
typedef typename Gimpl::GaugeLinkField GaugeMat;
typedef typename Gimpl::GaugeField GaugeLorentz;
static void GaugeLinkToLieAlgebraField(const std::vector<GaugeMat> &U,std::vector<GaugeMat> &A) {
for(int mu=0;mu<Nd;mu++){
Complex cmi(0.0,-1.0);
A[mu] = Ta(U[mu]) * cmi;
}
}
static void DmuAmu(const std::vector<GaugeMat> &A,GaugeMat &dmuAmu) {
dmuAmu=zero;
for(int mu=0;mu<Nd;mu++){
dmuAmu = dmuAmu + A[mu] - Cshift(A[mu],mu,-1);
}
}
static void SteepestDescentGaugeFix(GaugeLorentz &Umu,Real & alpha,int maxiter,Real Omega_tol, Real Phi_tol,bool Fourier=false) {
GridBase *grid = Umu._grid;
Real org_plaq =WilsonLoops<Gimpl>::avgPlaquette(Umu);
Real org_link_trace=WilsonLoops<Gimpl>::linkTrace(Umu);
Real old_trace = org_link_trace;
Real trG;
std::vector<GaugeMat> U(Nd,grid);
GaugeMat dmuAmu(grid);
for(int i=0;i<maxiter;i++){
for(int mu=0;mu<Nd;mu++) U[mu]= PeekIndex<LorentzIndex>(Umu,mu);
if ( Fourier==false ) {
trG = SteepestDescentStep(U,alpha,dmuAmu);
} else {
trG = FourierAccelSteepestDescentStep(U,alpha,dmuAmu);
}
for(int mu=0;mu<Nd;mu++) PokeIndex<LorentzIndex>(Umu,U[mu],mu);
// Monitor progress and convergence test
// infrequently to minimise cost overhead
if ( i %20 == 0 ) {
Real plaq =WilsonLoops<Gimpl>::avgPlaquette(Umu);
Real link_trace=WilsonLoops<Gimpl>::linkTrace(Umu);
if (Fourier)
std::cout << GridLogMessage << "Fourier Iteration "<<i<< " plaq= "<<plaq<< " dmuAmu " << norm2(dmuAmu)<< std::endl;
else
std::cout << GridLogMessage << " Iteration "<<i<< " plaq= "<<plaq<< " dmuAmu " << norm2(dmuAmu)<< std::endl;
Real Phi = 1.0 - old_trace / link_trace ;
Real Omega= 1.0 - trG;
std::cout << GridLogMessage << " Iteration "<<i<< " Phi= "<<Phi<< " Omega= " << Omega<< " trG " << trG <<std::endl;
if ( (Omega < Omega_tol) && ( ::fabs(Phi) < Phi_tol) ) {
std::cout << GridLogMessage << "Converged ! "<<std::endl;
return;
}
old_trace = link_trace;
}
}
};
static Real SteepestDescentStep(std::vector<GaugeMat> &U,Real & alpha, GaugeMat & dmuAmu) {
GridBase *grid = U[0]._grid;
std::vector<GaugeMat> A(Nd,grid);
GaugeMat g(grid);
GaugeLinkToLieAlgebraField(U,A);
ExpiAlphaDmuAmu(A,g,alpha,dmuAmu);
Real vol = grid->gSites();
Real trG = TensorRemove(sum(trace(g))).real()/vol/Nc;
SU<Nc>::GaugeTransform(U,g);
return trG;
}
static Real FourierAccelSteepestDescentStep(std::vector<GaugeMat> &U,Real & alpha, GaugeMat & dmuAmu) {
GridBase *grid = U[0]._grid;
Real vol = grid->gSites();
FFT theFFT((GridCartesian *)grid);
LatticeComplex Fp(grid);
LatticeComplex psq(grid); psq=zero;
LatticeComplex pmu(grid);
LatticeComplex one(grid); one = Complex(1.0,0.0);
GaugeMat g(grid);
GaugeMat dmuAmu_p(grid);
std::vector<GaugeMat> A(Nd,grid);
GaugeLinkToLieAlgebraField(U,A);
DmuAmu(A,dmuAmu);
theFFT.FFT_all_dim(dmuAmu_p,dmuAmu,FFT::forward);
//////////////////////////////////
// Work out Fp = psq_max/ psq...
//////////////////////////////////
std::vector<int> latt_size = grid->GlobalDimensions();
std::vector<int> coor(grid->_ndimension,0);
for(int mu=0;mu<Nd;mu++) {
Real TwoPiL = M_PI * 2.0/ latt_size[mu];
LatticeCoordinate(pmu,mu);
pmu = TwoPiL * pmu ;
psq = psq + 4.0*sin(pmu*0.5)*sin(pmu*0.5);
}
Complex psqMax(16.0);
Fp = psqMax*one/psq;
/*
static int once;
if ( once == 0 ) {
std::cout << " Fp " << Fp <<std::endl;
once ++;
}*/
pokeSite(TComplex(1.0),Fp,coor);
dmuAmu_p = dmuAmu_p * Fp;
theFFT.FFT_all_dim(dmuAmu,dmuAmu_p,FFT::backward);
GaugeMat ciadmam(grid);
Complex cialpha(0.0,-alpha);
ciadmam = dmuAmu*cialpha;
SU<Nc>::taExp(ciadmam,g);
Real trG = TensorRemove(sum(trace(g))).real()/vol/Nc;
SU<Nc>::GaugeTransform(U,g);
return trG;
}
static void ExpiAlphaDmuAmu(const std::vector<GaugeMat> &A,GaugeMat &g,Real & alpha, GaugeMat &dmuAmu) {
GridBase *grid = g._grid;
Complex cialpha(0.0,-alpha);
GaugeMat ciadmam(grid);
DmuAmu(A,dmuAmu);
ciadmam = dmuAmu*cialpha;
SU<Nc>::taExp(ciadmam,g);
}
};

3
lib/qcd/utils/SUn.h
View File

@ -716,8 +716,7 @@ template<typename GaugeField,typename GaugeMat>
for (int a = 0; a < AdjointDimension; a++) {
generator(a, Ta);
auto tmp = - 2.0 * (trace(timesI(Ta) * in)) * scale;// 2.0 for the normalization of the trace in the fundamental rep
pokeColour(h_out, tmp, a);
pokeColour(h_out, - 2.0 * (trace(timesI(Ta) * in)) * scale, a);
}
}

3
lib/qcd/utils/Utils.h
View File

@ -12,7 +12,4 @@
#include <Grid/qcd/utils/SUnAdjoint.h>
#include <Grid/qcd/utils/SUnTwoIndex.h>
#endif

71
lib/qcd/utils/WilsonLoops.h
View File

@ -73,7 +73,7 @@ public:
//////////////////////////////////////////////////
// trace of directed plaquette oriented in mu,nu plane
//////////////////////////////////////////////////
static void traceDirPlaquette(LatticeComplex &plaq,
static void traceDirPlaquette(ComplexField &plaq,
const std::vector<GaugeMat> &U, const int mu,
const int nu) {
GaugeMat sp(U[0]._grid);
@ -83,9 +83,9 @@ public:
//////////////////////////////////////////////////
// sum over all planes of plaquette
//////////////////////////////////////////////////
static void sitePlaquette(LatticeComplex &Plaq,
static void sitePlaquette(ComplexField &Plaq,
const std::vector<GaugeMat> &U) {
LatticeComplex sitePlaq(U[0]._grid);
ComplexField sitePlaq(U[0]._grid);
Plaq = zero;
for (int mu = 1; mu < Nd; mu++) {
for (int nu = 0; nu < mu; nu++) {
@ -104,11 +104,11 @@ public:
U[mu] = PeekIndex<LorentzIndex>(Umu, mu);
}
LatticeComplex Plaq(Umu._grid);
ComplexField Plaq(Umu._grid);
sitePlaquette(Plaq, U);
TComplex Tp = sum(Plaq);
Complex p = TensorRemove(Tp);
auto Tp = sum(Plaq);
auto p = TensorRemove(Tp);
return p.real();
}
@ -129,15 +129,15 @@ public:
static RealD linkTrace(const GaugeLorentz &Umu) {
std::vector<GaugeMat> U(Nd, Umu._grid);
LatticeComplex Tr(Umu._grid);
ComplexField Tr(Umu._grid);
Tr = zero;
for (int mu = 0; mu < Nd; mu++) {
U[mu] = PeekIndex<LorentzIndex>(Umu, mu);
Tr = Tr + trace(U[mu]);
}
TComplex Tp = sum(Tr);
Complex p = TensorRemove(Tp);
auto Tp = sum(Tr);
auto p = TensorRemove(Tp);
double vol = Umu._grid->gSites();
@ -188,6 +188,32 @@ public:
}
}
// For the force term
static void StapleMult(GaugeMat &staple, const GaugeLorentz &Umu, int mu) {
GridBase *grid = Umu._grid;
std::vector<GaugeMat> U(Nd, grid);
for (int d = 0; d < Nd; d++) {
// this operation is taking too much time
U[d] = PeekIndex<LorentzIndex>(Umu, d);
}
staple = zero;
GaugeMat tmp1(grid);
GaugeMat tmp2(grid);
for (int nu = 0; nu < Nd; nu++) {
if (nu != mu) {
// this is ~10% faster than the Staple
tmp1 = Cshift(U[nu], mu, 1);
tmp2 = Cshift(U[mu], nu, 1);
staple += tmp1* adj(U[nu]*tmp2);
tmp2 = adj(U[mu]*tmp1)*U[nu];
staple += Cshift(tmp2, nu, -1);
}
}
staple = U[mu]*staple;
}
//////////////////////////////////////////////////
// the sum over all staples on each site
//////////////////////////////////////////////////
@ -200,7 +226,6 @@ public:
U[d] = PeekIndex<LorentzIndex>(Umu, d);
}
staple = zero;
GaugeMat tmp(grid);
for (int nu = 0; nu < Nd; nu++) {
@ -214,7 +239,7 @@ public:
// |
// __|
//
staple += Gimpl::ShiftStaple(
Gimpl::CovShiftForward(
U[nu], nu,
@ -227,6 +252,7 @@ public:
// |__
//
//
staple += Gimpl::ShiftStaple(
Gimpl::CovShiftBackward(U[nu], nu,
Gimpl::CovShiftBackward(U[mu], mu, U[nu])), mu);
@ -289,8 +315,7 @@ public:
//
staple = Gimpl::ShiftStaple(
Gimpl::CovShiftBackward(U[nu], nu,
Gimpl::CovShiftBackward(U[mu], mu, U[nu])),
mu);
Gimpl::CovShiftBackward(U[mu], mu, U[nu])), mu);
}
}
@ -307,10 +332,10 @@ public:
GaugeMat Vup(Umu._grid), Vdn(Umu._grid);
StapleUpper(Vup, Umu, mu, nu);
StapleLower(Vdn, Umu, mu, nu);
GaugeMat v = adj(Vup) - adj(Vdn);
GaugeMat v = Vup - Vdn;
GaugeMat u = PeekIndex<LorentzIndex>(Umu, mu); // some redundant copies
GaugeMat vu = v*u;
FS = 0.25*Ta(u*v + Cshift(vu, mu, +1));
FS = 0.25*Ta(u*v + Cshift(vu, mu, -1));
}
static Real TopologicalCharge(GaugeLorentz &U){
@ -330,8 +355,8 @@ public:
double coeff = 8.0/(32.0*M_PI*M_PI);
LatticeComplex qfield = coeff*trace(Bx*Ex + By*Ey + Bz*Ez);
TComplex Tq = sum(qfield);
ComplexField qfield = coeff*trace(Bx*Ex + By*Ey + Bz*Ez);
auto Tq = sum(qfield);
return TensorRemove(Tq).real();
}
@ -350,16 +375,16 @@ public:
adj(Gimpl::CovShiftForward(
U[nu], nu, Gimpl::CovShiftForward(U[nu], nu, U[mu])));
}
static void traceDirRectangle(LatticeComplex &rect,
static void traceDirRectangle(ComplexField &rect,
const std::vector<GaugeMat> &U, const int mu,
const int nu) {
GaugeMat sp(U[0]._grid);
dirRectangle(sp, U, mu, nu);
rect = trace(sp);
}
static void siteRectangle(LatticeComplex &Rect,
static void siteRectangle(ComplexField &Rect,
const std::vector<GaugeMat> &U) {
LatticeComplex siteRect(U[0]._grid);
ComplexField siteRect(U[0]._grid);
Rect = zero;
for (int mu = 1; mu < Nd; mu++) {
for (int nu = 0; nu < mu; nu++) {
@ -379,12 +404,12 @@ public:
U[mu] = PeekIndex<LorentzIndex>(Umu, mu);
}
LatticeComplex Rect(Umu._grid);
ComplexField Rect(Umu._grid);
siteRectangle(Rect, U);
TComplex Tp = sum(Rect);
Complex p = TensorRemove(Tp);
auto Tp = sum(Rect);
auto p = TensorRemove(Tp);
return p.real();
}
//////////////////////////////////////////////////

4
lib/serialisation/Hdf5IO.cc
View File

@ -65,10 +65,12 @@ Hdf5Reader::Hdf5Reader(const std::string &fileName)
Hdf5Type<unsigned int>::type());
}
void Hdf5Reader::push(const std::string &s)
bool Hdf5Reader::push(const std::string &s)
{
group_ = group_.openGroup(s);
path_.push_back(s);
return true;
}
void Hdf5Reader::pop(void)

2
lib/serialisation/Hdf5IO.h
View File

@ -54,7 +54,7 @@ namespace Grid
public:
Hdf5Reader(const std::string &fileName);
virtual ~Hdf5Reader(void) = default;
void push(const std::string &s);
bool push(const std::string &s);
void pop(void);
template <typename U>
void readDefault(const std::string &s, U &output);

3
lib/serialisation/MacroMagic.h
View File

@ -110,11 +110,12 @@ THE SOFTWARE.
#define GRID_MACRO_MEMBER(A,B) A B;
#define GRID_MACRO_COMP_MEMBER(A,B) result = (result and (lhs. B == rhs. B));
#define GRID_MACRO_OS_WRITE_MEMBER(A,B) os<< #A <<" "#B <<" = "<< obj. B <<" ; " <<std::endl;
#define GRID_MACRO_OS_WRITE_MEMBER(A,B) os<< #A <<" " #B << " = " << obj. B << " ; " <<std::endl;
#define GRID_MACRO_READ_MEMBER(A,B) Grid::read(RD,#B,obj. B);
#define GRID_MACRO_WRITE_MEMBER(A,B) Grid::write(WR,#B,obj. B);
#define GRID_SERIALIZABLE_CLASS_MEMBERS(cname,...)\
std::string SerialisableClassName(void) {return std::string(#cname);} \
GRID_MACRO_EVAL(GRID_MACRO_MAP(GRID_MACRO_MEMBER,__VA_ARGS__))\
template <typename T>\
static inline void write(Writer<T> &WR,const std::string &s, const cname &obj){ \

58
lib/serialisation/XmlIO.cc
View File

@ -32,16 +32,21 @@ using namespace Grid;
using namespace std;
// Writer implementation ///////////////////////////////////////////////////////
XmlWriter::XmlWriter(const string &fileName)
: fileName_(fileName)
XmlWriter::XmlWriter(const string &fileName, string toplev) : fileName_(fileName)
{
node_ = doc_.append_child();
node_.set_name("grid");
if ( toplev == std::string("") ) {
node_=doc_;
} else {
node_=doc_.append_child();
node_.set_name(toplev.c_str());
}
}
XmlWriter::~XmlWriter(void)
{
doc_.save_file(fileName_.c_str(), " ");
if ( fileName_ != std::string("") ) {
doc_.save_file(fileName_.c_str(), " ");
}
}
void XmlWriter::push(const string &s)
@ -53,21 +58,44 @@ void XmlWriter::pop(void)
{
node_ = node_.parent();
}
// Reader implementation ///////////////////////////////////////////////////////
XmlReader::XmlReader(const string &fileName)
: fileName_(fileName)
std::string XmlWriter::XmlString(void)
{
pugi::xml_parse_result result = doc_.load_file(fileName_.c_str());
if ( !result )
{
std::ostringstream oss;
doc_.save(oss);
return oss.str();
}
XmlReader::XmlReader(const char *xmlstring,string toplev) : fileName_("")
{
pugi::xml_parse_result result;
result = doc_.load_string(xmlstring);
if ( !result ) {
cerr << "XML error description: " << result.description() << "\n";
cerr << "XML error offset : " << result.offset << "\n";
abort();
}
node_ = doc_.child("grid");
if ( toplev == std::string("") ) {
node_ = doc_;
} else {
node_ = doc_.child(toplev.c_str());
}
}
// Reader implementation ///////////////////////////////////////////////////////
XmlReader::XmlReader(const string &fileName,string toplev) : fileName_(fileName)
{
pugi::xml_parse_result result;
result = doc_.load_file(fileName_.c_str());
if ( !result ) {
cerr << "XML error description: " << result.description() << "\n";
cerr << "XML error offset : " << result.offset << "\n";
abort();
}
if ( toplev == std::string("") ) {
node_ = doc_;
} else {
node_ = doc_.child(toplev.c_str());
}
}
bool XmlReader::push(const string &s)

11
lib/serialisation/XmlIO.h
View File

@ -44,10 +44,9 @@ namespace Grid
{
class XmlWriter: public Writer<XmlWriter>
{
{
public:
XmlWriter(const std::string &fileName);
XmlWriter(const std::string &fileName,std::string toplev = std::string("grid") );
virtual ~XmlWriter(void);
void push(const std::string &s);
void pop(void);
@ -55,6 +54,7 @@ namespace Grid
void writeDefault(const std::string &s, const U &x);
template <typename U>
void writeDefault(const std::string &s, const std::vector<U> &x);
std::string XmlString(void);
private:
pugi::xml_document doc_;
pugi::xml_node node_;
@ -64,7 +64,8 @@ namespace Grid
class XmlReader: public Reader<XmlReader>
{
public:
XmlReader(const std::string &fileName);
XmlReader(const char *xmlstring,std::string toplev = std::string("grid") );
XmlReader(const std::string &fileName,std::string toplev = std::string("grid") );
virtual ~XmlReader(void) = default;
bool push(const std::string &s);
void pop(void);
@ -118,7 +119,7 @@ namespace Grid
std::string buf;
readDefault(s, buf);
std::cout << s << " " << buf << std::endl;
// std::cout << s << " " << buf << std::endl;
fromString(output, buf);
}

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