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	James H.'s code for general size Wilson loops
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		@@ -6,10 +6,12 @@
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    Copyright (C) 2015
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Author: Azusa Yamaguchi <ayamaguc@staffmail.ed.ac.uk>
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Author: Peter Boyle <paboyle@ph.ed.ac.uk>
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Author: neo <cossu@post.kek.jp>
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Author: paboyle <paboyle@ph.ed.ac.uk>
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    Author: Azusa Yamaguchi <ayamaguc@staffmail.ed.ac.uk>
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    Author: Peter Boyle <paboyle@ph.ed.ac.uk>
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    Author: neo <cossu@post.kek.jp>
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    Author: paboyle <paboyle@ph.ed.ac.uk>
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    Author: James Harrison <J.Harrison@soton.ac.uk>
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    Author: Antonin Portelli <antonin.portelli@me.com>
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    This program is free software; you can redistribute it and/or modify
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    it under the terms of the GNU General Public License as published by
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@@ -645,6 +647,184 @@ static void StapleMult(GaugeMat &staple, const GaugeLorentz &Umu, int mu) {
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      }
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    }
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  }
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  //////////////////////////////////////////////////
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  // Wilson loop of size (R1, R2), oriented in mu,nu plane
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  //////////////////////////////////////////////////
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  static void wilsonLoop(GaugeMat &wl, const std::vector<GaugeMat> &U,
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                           const int Rmu, const int Rnu,
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                           const int mu, const int nu) {
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    wl = U[nu];
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    for(int i = 0; i < Rnu-1; i++){
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      wl = Gimpl::CovShiftForward(U[nu], nu, wl);
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    }
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    for(int i = 0; i < Rmu; i++){
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      wl = Gimpl::CovShiftForward(U[mu], mu, wl);
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    }
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    for(int i = 0; i < Rnu; i++){
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      wl = Gimpl::CovShiftBackward(U[nu], nu, wl);
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    }
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    for(int i = 0; i < Rmu; i++){
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      wl = Gimpl::CovShiftBackward(U[mu], mu, wl);
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    }
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  }
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  //////////////////////////////////////////////////
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  // trace of Wilson Loop oriented in mu,nu plane
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  //////////////////////////////////////////////////
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  static void traceWilsonLoop(LatticeComplex &wl,
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                                const std::vector<GaugeMat> &U,
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                                const int Rmu, const int Rnu,
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                                const int mu, const int nu) {
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    GaugeMat sp(U[0]._grid);
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    wilsonLoop(sp, U, Rmu, Rnu, mu, nu);
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    wl = trace(sp);
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  }
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  //////////////////////////////////////////////////
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  // sum over all planes of Wilson loop
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  //////////////////////////////////////////////////
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  static void siteWilsonLoop(LatticeComplex &Wl,
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                            const std::vector<GaugeMat> &U,
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                            const int R1, const int R2) {
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    LatticeComplex siteWl(U[0]._grid);
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    Wl = zero;
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    for (int mu = 1; mu < U[0]._grid->_ndimension; mu++) {
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      for (int nu = 0; nu < mu; nu++) {
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        traceWilsonLoop(siteWl, U, R1, R2, mu, nu);
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        Wl = Wl + siteWl;
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        traceWilsonLoop(siteWl, U, R2, R1, mu, nu);
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        Wl = Wl + siteWl;
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      }
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    }
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  }
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  //////////////////////////////////////////////////
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  // sum over planes of Wilson loop with length R1
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  // in the time direction
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  //////////////////////////////////////////////////
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  static void siteTimelikeWilsonLoop(LatticeComplex &Wl,
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                            const std::vector<GaugeMat> &U,
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                            const int R1, const int R2) {
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    LatticeComplex siteWl(U[0]._grid);
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    int ndim = U[0]._grid->_ndimension;
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    Wl = zero;
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    for (int nu = 0; nu < ndim - 1; nu++) {
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      traceWilsonLoop(siteWl, U, R1, R2, ndim-1, nu);
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      Wl = Wl + siteWl;
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    }
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  }
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  //////////////////////////////////////////////////
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  // sum Wilson loop over all planes orthogonal to the time direction
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  //////////////////////////////////////////////////
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  static void siteSpatialWilsonLoop(LatticeComplex &Wl,
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                            const std::vector<GaugeMat> &U,
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                            const int R1, const int R2) {
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    LatticeComplex siteWl(U[0]._grid);
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    Wl = zero;
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    for (int mu = 1; mu < U[0]._grid->_ndimension - 1; mu++) {
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      for (int nu = 0; nu < mu; nu++) {
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        traceWilsonLoop(siteWl, U, R1, R2, mu, nu);
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        Wl = Wl + siteWl;
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        traceWilsonLoop(siteWl, U, R2, R1, mu, nu);
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        Wl = Wl + siteWl;
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      }
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    }
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  }
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  //////////////////////////////////////////////////
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  // sum over all x,y,z,t and over all planes of Wilson loop
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  //////////////////////////////////////////////////
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  static Real sumWilsonLoop(const GaugeLorentz &Umu,
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                            const int R1, const int R2) {
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    std::vector<GaugeMat> U(4, Umu._grid);
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    for (int mu = 0; mu < Umu._grid->_ndimension; mu++) {
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      U[mu] = PeekIndex<LorentzIndex>(Umu, mu);
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    }
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    LatticeComplex Wl(Umu._grid);
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    siteWilsonLoop(Wl, U, R1, R2);
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    TComplex Tp = sum(Wl);
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    Complex p = TensorRemove(Tp);
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    return p.real();
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  }
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  //////////////////////////////////////////////////
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  // sum over all x,y,z,t and over all planes of timelike Wilson loop
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  //////////////////////////////////////////////////
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  static Real sumTimelikeWilsonLoop(const GaugeLorentz &Umu,
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                            const int R1, const int R2) {
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    std::vector<GaugeMat> U(4, Umu._grid);
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    for (int mu = 0; mu < Umu._grid->_ndimension; mu++) {
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      U[mu] = PeekIndex<LorentzIndex>(Umu, mu);
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    }
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    LatticeComplex Wl(Umu._grid);
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    siteTimelikeWilsonLoop(Wl, U, R1, R2);
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    TComplex Tp = sum(Wl);
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    Complex p = TensorRemove(Tp);
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    return p.real();
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  }
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  //////////////////////////////////////////////////
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  // sum over all x,y,z,t and over all planes of spatial Wilson loop
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  //////////////////////////////////////////////////
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  static Real sumSpatialWilsonLoop(const GaugeLorentz &Umu,
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                            const int R1, const int R2) {
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    std::vector<GaugeMat> U(4, Umu._grid);
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    for (int mu = 0; mu < Umu._grid->_ndimension; mu++) {
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      U[mu] = PeekIndex<LorentzIndex>(Umu, mu);
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    }
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    LatticeComplex Wl(Umu._grid);
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    siteSpatialWilsonLoop(Wl, U, R1, R2);
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    TComplex Tp = sum(Wl);
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    Complex p = TensorRemove(Tp);
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    return p.real();
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  }
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  //////////////////////////////////////////////////
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  // average over all x,y,z,t and over all planes of Wilson loop
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  //////////////////////////////////////////////////
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  static Real avgWilsonLoop(const GaugeLorentz &Umu,
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                            const int R1, const int R2) {
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    int ndim = Umu._grid->_ndimension;
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    Real sumWl = sumWilsonLoop(Umu, R1, R2);
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    Real vol = Umu._grid->gSites();
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    Real faces = 1.0 * ndim * (ndim - 1);
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    return sumWl / vol / faces / Nc; // Nc dependent... FIXME
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  }
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  //////////////////////////////////////////////////
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  // average over all x,y,z,t and over all planes of timelike Wilson loop
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  //////////////////////////////////////////////////
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  static Real avgTimelikeWilsonLoop(const GaugeLorentz &Umu,
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                            const int R1, const int R2) {
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    int ndim = Umu._grid->_ndimension;
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    Real sumWl = sumTimelikeWilsonLoop(Umu, R1, R2);
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    Real vol = Umu._grid->gSites();
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    Real faces = 1.0 * (ndim - 1);
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    return sumWl / vol / faces / Nc; // Nc dependent... FIXME
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  }
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  //////////////////////////////////////////////////
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  // average over all x,y,z,t and over all planes of spatial Wilson loop
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  //////////////////////////////////////////////////
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  static Real avgSpatialWilsonLoop(const GaugeLorentz &Umu,
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                            const int R1, const int R2) {
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    int ndim = Umu._grid->_ndimension;
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    Real sumWl = sumSpatialWilsonLoop(Umu, R1, R2);
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    Real vol = Umu._grid->gSites();
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    Real faces = 1.0 * (ndim - 1) * (ndim - 2);
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    return sumWl / vol / faces / Nc; // Nc dependent... FIXME
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  }
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};
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typedef WilsonLoops<PeriodicGimplR> ColourWilsonLoops;
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