mirror of
https://github.com/paboyle/Grid.git
synced 2024-11-10 07:55:35 +00:00
Merge branch 'release/dirac-ITT' into develop
This commit is contained in:
paboyle
commit
d856327250
@ -232,9 +232,13 @@ public:
|
||||
std::cout<<GridLogMessage << "=================================================================================="<<std::endl;
|
||||
std::cout<<GridLogMessage << "= Benchmarking a*x + y bandwidth"<<std::endl;
|
||||
std::cout<<GridLogMessage << "=================================================================================="<<std::endl;
|
||||
std::cout<<GridLogMessage << " L "<<"\t\t"<<"bytes"<<"\t\t\t"<<"GB/s"<<"\t\t"<<"Gflop/s"<<"\t\t seconds"<<std::endl;
|
||||
std::cout<<GridLogMessage << " L "<<"\t\t"<<"bytes"<<"\t\t\t"<<"GB/s"<<"\t\t"<<"Gflop/s"<<"\t\t seconds"<< "\t\tGB/s / node"<<std::endl;
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||||
std::cout<<GridLogMessage << "----------------------------------------------------------"<<std::endl;
|
||||
|
||||
uint64_t NP;
|
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uint64_t NN;
|
||||
|
||||
|
||||
uint64_t lmax=48;
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#define NLOOP (100*lmax*lmax*lmax*lmax/lat/lat/lat/lat)
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|
||||
@ -245,6 +249,9 @@ public:
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int64_t vol= latt_size[0]*latt_size[1]*latt_size[2]*latt_size[3];
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GridCartesian Grid(latt_size,simd_layout,mpi_layout);
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NP= Grid.RankCount();
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NN =Grid.NodeCount();
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Vec rn ; random(sRNG,rn);
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LatticeVec z(&Grid); z=rn;
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@ -266,7 +273,8 @@ public:
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double flops=vol*Nvec*2;// mul,add
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double bytes=3.0*vol*Nvec*sizeof(Real);
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std::cout<<GridLogMessage<<std::setprecision(3)
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<< lat<<"\t\t"<<bytes<<" \t\t"<<bytes/time<<"\t\t"<<flops/time<<"\t\t"<<(stop-start)/1000./1000.<<std::endl;
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<< lat<<"\t\t"<<bytes<<" \t\t"<<bytes/time<<"\t\t"<<flops/time<<"\t\t"<<(stop-start)/1000./1000.
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<< "\t\t"<< bytes/time/NN <<std::endl;
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}
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};
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@ -387,6 +395,8 @@ public:
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std::cout<<GridLogMessage << "=================================================================================="<<std::endl;
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int nwarm = 100;
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uint64_t ncall = 1000;
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double t0=usecond();
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sFGrid->Barrier();
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for(int i=0;i<nwarm;i++){
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@ -394,15 +404,8 @@ public:
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}
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sFGrid->Barrier();
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double t1=usecond();
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// uint64_t ncall = (uint64_t) 2.5*1000.0*1000.0*nwarm/(t1-t0);
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// if (ncall < 500) ncall = 500;
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uint64_t ncall = 500;
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sFGrid->Broadcast(0,&ncall,sizeof(ncall));
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// std::cout << GridLogMessage << " Estimate " << ncall << " calls per second"<<std::endl;
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sDw.ZeroCounters();
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time_statistics timestat;
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std::vector<double> t_time(ncall);
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for(uint64_t i=0;i<ncall;i++){
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@ -436,12 +439,14 @@ public:
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sDw.Report();
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}
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double robust = mflops_worst/mflops_best;;
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std::cout<<GridLogMessage << "=================================================================================="<<std::endl;
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std::cout<<GridLogMessage << L<<"^4 x "<<Ls<< " sDeo Best mflop/s = "<< mflops_best << " ; " << mflops_best/NN<<" per node " <<std::endl;
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std::cout<<GridLogMessage << L<<"^4 x "<<Ls<< " sDeo Worst mflop/s = "<< mflops_worst<< " ; " << mflops_worst/NN<<" per node " <<std::endl;
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std::cout<<GridLogMessage << L<<"^4 x "<<Ls<< " Performance Robustness = "<< mflops_worst/mflops_best <<std::endl;
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std::cout<<GridLogMessage <<std::setprecision(3)<< L<<"^4 x "<<Ls<< " Performance Robustness = "<< robust <<std::endl;
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std::cout<<GridLogMessage <<fmt << std::endl;
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std::cout<<GridLogMessage ;
|
||||
std::cout<<GridLogMessage;
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for(int i=0;i<mflops_all.size();i++){
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std::cout<<mflops_all[i]/NN<<" ; " ;
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@ -453,7 +458,7 @@ public:
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return mflops_best;
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||||
}
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|
||||
static double DWF(int Ls,int L)
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static double DWF(int Ls,int L, double & robust)
|
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{
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||||
RealD mass=0.1;
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RealD M5 =1.8;
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||||
@ -655,10 +660,11 @@ public:
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||||
assert((norm2(err)<1.0e-4));
|
||||
|
||||
}
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robust = mflops_worst/mflops_best;
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std::cout<<GridLogMessage << "=================================================================================="<<std::endl;
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std::cout<<GridLogMessage << L<<"^4 x "<<Ls<< " Deo Best mflop/s = "<< mflops_best << " ; " << mflops_best/NN<<" per node " <<std::endl;
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std::cout<<GridLogMessage << L<<"^4 x "<<Ls<< " Deo Worst mflop/s = "<< mflops_worst<< " ; " << mflops_worst/NN<<" per node " <<std::endl;
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std::cout<<GridLogMessage << L<<"^4 x "<<Ls<< " Performance Robustness = "<< mflops_worst/mflops_best <<std::endl;
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std::cout<<GridLogMessage << std::fixed<<std::setprecision(3)<< L<<"^4 x "<<Ls<< " Performance Robustness = "<< robust <<std::endl;
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std::cout<<GridLogMessage <<fmt << std::endl;
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||||
std::cout<<GridLogMessage ;
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|
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@ -692,26 +698,17 @@ int main (int argc, char ** argv)
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int do_wilson=1;
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||||
int do_dwf =1;
|
||||
|
||||
if ( do_memory ) {
|
||||
std::cout<<GridLogMessage << "=================================================================================="<<std::endl;
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||||
std::cout<<GridLogMessage << " Memory benchmark " <<std::endl;
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std::cout<<GridLogMessage << "=================================================================================="<<std::endl;
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||||
Benchmark::Memory();
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||||
}
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||||
|
||||
if ( do_comms ) {
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std::cout<<GridLogMessage << "=================================================================================="<<std::endl;
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std::cout<<GridLogMessage << " Communications benchmark " <<std::endl;
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std::cout<<GridLogMessage << "=================================================================================="<<std::endl;
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Benchmark::Comms();
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}
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||||
|
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if ( do_su3 ) {
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||||
// empty for now
|
||||
}
|
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|
||||
int sel=2;
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||||
std::vector<int> L_list({8,12,16,24});
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||||
|
||||
//int sel=1;
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||||
// std::vector<int> L_list({8,12});
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||||
std::vector<double> robust_list;
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||||
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||||
std::vector<double> wilson;
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||||
std::vector<double> dwf4;
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std::vector<double> dwf5;
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||||
@ -722,7 +719,8 @@ int main (int argc, char ** argv)
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||||
std::cout<<GridLogMessage << " Wilson dslash 4D vectorised" <<std::endl;
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||||
std::cout<<GridLogMessage << "=================================================================================="<<std::endl;
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for(int l=0;l<L_list.size();l++){
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wilson.push_back(Benchmark::DWF(1,L_list[l]));
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||||
double robust;
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wilson.push_back(Benchmark::DWF(1,L_list[l],robust));
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||||
}
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||||
}
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||||
@ -732,7 +730,10 @@ int main (int argc, char ** argv)
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std::cout<<GridLogMessage << " Domain wall dslash 4D vectorised" <<std::endl;
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||||
std::cout<<GridLogMessage << "=================================================================================="<<std::endl;
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||||
for(int l=0;l<L_list.size();l++){
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||||
dwf4.push_back(Benchmark::DWF(Ls,L_list[l]));
|
||||
double robust;
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||||
double result = Benchmark::DWF(Ls,L_list[l],robust) ;
|
||||
dwf4.push_back(result);
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||||
robust_list.push_back(robust);
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||||
}
|
||||
}
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||||
|
||||
@ -744,6 +745,10 @@ int main (int argc, char ** argv)
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||||
dwf5.push_back(Benchmark::DWF5(Ls,L_list[l]));
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
if ( do_dwf ) {
|
||||
|
||||
std::cout<<GridLogMessage << "=================================================================================="<<std::endl;
|
||||
std::cout<<GridLogMessage << " Summary table Ls="<<Ls <<std::endl;
|
||||
std::cout<<GridLogMessage << "=================================================================================="<<std::endl;
|
||||
@ -752,11 +757,27 @@ int main (int argc, char ** argv)
|
||||
std::cout<<GridLogMessage << L_list[l] <<" \t\t "<< wilson[l]<<" \t "<<dwf4[l]<<" \t "<<dwf5[l] <<std::endl;
|
||||
}
|
||||
std::cout<<GridLogMessage << "=================================================================================="<<std::endl;
|
||||
}
|
||||
|
||||
int NN=NN_global;
|
||||
if ( do_memory ) {
|
||||
std::cout<<GridLogMessage << "=================================================================================="<<std::endl;
|
||||
std::cout<<GridLogMessage << " Memory benchmark " <<std::endl;
|
||||
std::cout<<GridLogMessage << "=================================================================================="<<std::endl;
|
||||
Benchmark::Memory();
|
||||
}
|
||||
|
||||
if ( do_comms && (NN>1) ) {
|
||||
std::cout<<GridLogMessage << "=================================================================================="<<std::endl;
|
||||
std::cout<<GridLogMessage << " Communications benchmark " <<std::endl;
|
||||
std::cout<<GridLogMessage << "=================================================================================="<<std::endl;
|
||||
Benchmark::Comms();
|
||||
}
|
||||
|
||||
if ( do_dwf ) {
|
||||
std::cout<<GridLogMessage << "=================================================================================="<<std::endl;
|
||||
std::cout<<GridLogMessage << " Per Node Summary table Ls="<<Ls <<std::endl;
|
||||
std::cout<<GridLogMessage << "=================================================================================="<<std::endl;
|
||||
int NN=NN_global;
|
||||
std::cout<<GridLogMessage << " L \t\t Wilson\t\t DWF4 \t\t DWF5 " <<std::endl;
|
||||
for(int l=0;l<L_list.size();l++){
|
||||
std::cout<<GridLogMessage << L_list[l] <<" \t\t "<< wilson[l]/NN<<" \t "<<dwf4[l]/NN<<" \t "<<dwf5[l] /NN<<std::endl;
|
||||
@ -764,10 +785,11 @@ int main (int argc, char ** argv)
|
||||
std::cout<<GridLogMessage << "=================================================================================="<<std::endl;
|
||||
|
||||
std::cout<<GridLogMessage << "=================================================================================="<<std::endl;
|
||||
std::cout<<GridLogMessage << " Comparison point result: " << dwf4[sel]/NN <<std::endl;
|
||||
std::cout<<GridLogMessage << " Comparison point result: " << dwf4[sel]/NN << " Mflop/s per node"<<std::endl;
|
||||
std::cout<<std::setprecision(3);
|
||||
std::cout<<GridLogMessage << " Comparison point robustness: " << robust_list[sel] <<std::endl;
|
||||
std::cout<<GridLogMessage << "=================================================================================="<<std::endl;
|
||||
|
||||
|
||||
}
|
||||
|
||||
|
||||
|
||||
35
configure.ac
35
configure.ac
@ -331,8 +331,41 @@ case ${ac_PRECISION} in
|
||||
double)
|
||||
AC_DEFINE([GRID_DEFAULT_PRECISION_DOUBLE],[1],[GRID_DEFAULT_PRECISION is DOUBLE] )
|
||||
;;
|
||||
*)
|
||||
AC_MSG_ERROR([${ac_PRECISION} unsupported --enable-precision option]);
|
||||
;;
|
||||
esac
|
||||
|
||||
###################### Shared memory allocation technique under MPI3
|
||||
AC_ARG_ENABLE([shm],[AC_HELP_STRING([--enable-shm=shmget|shmopen|hugetlbfs],
|
||||
[Select SHM allocation technique])],[ac_SHM=${enable_shm}],[ac_SHM=shmopen])
|
||||
|
||||
case ${ac_SHM} in
|
||||
|
||||
shmget)
|
||||
AC_DEFINE([GRID_MPI3_SHMGET],[1],[GRID_MPI3_SHMGET] )
|
||||
;;
|
||||
|
||||
shmopen)
|
||||
AC_DEFINE([GRID_MPI3_SHMOPEN],[1],[GRID_MPI3_SHMOPEN] )
|
||||
;;
|
||||
|
||||
hugetlbfs)
|
||||
AC_DEFINE([GRID_MPI3_SHMMMAP],[1],[GRID_MPI3_SHMMMAP] )
|
||||
;;
|
||||
|
||||
*)
|
||||
AC_MSG_ERROR([${ac_SHM} unsupported --enable-shm option]);
|
||||
;;
|
||||
esac
|
||||
|
||||
###################### Shared base path for SHMMMAP
|
||||
AC_ARG_ENABLE([shmpath],[AC_HELP_STRING([--enable-shmpath=path],
|
||||
[Select SHM mmap base path for hugetlbfs])],
|
||||
[ac_SHMPATH=${enable_shmpath}],
|
||||
[ac_SHMPATH=/var/lib/hugetlbfs/pagesize-2MB/])
|
||||
AC_DEFINE_UNQUOTED([GRID_SHM_PATH],["$ac_SHMPATH"],[Path to a hugetlbfs filesystem for MMAPing])
|
||||
|
||||
############### communication type selection
|
||||
AC_ARG_ENABLE([comms],[AC_HELP_STRING([--enable-comms=none|mpi|mpi-auto|mpi3|mpi3-auto|shmem],
|
||||
[Select communications])],[ac_COMMS=${enable_comms}],[ac_COMMS=none])
|
||||
@ -482,6 +515,8 @@ compiler version : ${ax_cv_gxx_version}
|
||||
SIMD : ${ac_SIMD}${SIMD_GEN_WIDTH_MSG}
|
||||
Threading : ${ac_openmp}
|
||||
Communications type : ${comms_type}
|
||||
Shared memory allocator : ${ac_SHM}
|
||||
Shared memory mmap path : ${ac_SHMPATH}
|
||||
Default precision : ${ac_PRECISION}
|
||||
Software FP16 conversion : ${ac_SFW_FP16}
|
||||
RNG choice : ${ac_RNG}
|
||||
|
||||
@ -206,10 +206,12 @@ public:
|
||||
#endif
|
||||
size_type bytes = __n*sizeof(_Tp);
|
||||
uint8_t *cp = (uint8_t *)ptr;
|
||||
if ( ptr ) {
|
||||
// One touch per 4k page, static OMP loop to catch same loop order
|
||||
#pragma omp parallel for schedule(static)
|
||||
for(size_type n=0;n<bytes;n+=4096){
|
||||
cp[n]=0;
|
||||
for(size_type n=0;n<bytes;n+=4096){
|
||||
cp[n]=0;
|
||||
}
|
||||
}
|
||||
return ptr;
|
||||
}
|
||||
|
||||
@ -37,7 +37,7 @@ namespace Grid {
|
||||
// Info that is setup once and indept of cartesian layout
|
||||
///////////////////////////////////////////////////////////////
|
||||
void * CartesianCommunicator::ShmCommBuf;
|
||||
uint64_t CartesianCommunicator::MAX_MPI_SHM_BYTES = 128*1024*1024;
|
||||
uint64_t CartesianCommunicator::MAX_MPI_SHM_BYTES = 1024LL*1024LL*1024LL;
|
||||
CartesianCommunicator::CommunicatorPolicy_t
|
||||
CartesianCommunicator::CommunicatorPolicy= CartesianCommunicator::CommunicatorPolicyConcurrent;
|
||||
int CartesianCommunicator::nCommThreads = -1;
|
||||
@ -157,6 +157,7 @@ void CartesianCommunicator::ShmInitGeneric(void){
|
||||
perror("mmap failed ");
|
||||
exit(EXIT_FAILURE);
|
||||
}
|
||||
if (!Hugepages ) madvise(ShmCommBuf,MAX_MPI_SHM_BYTES,MADV_HUGEPAGE);
|
||||
#else
|
||||
ShmBufStorageVector.resize(MAX_MPI_SHM_BYTES);
|
||||
ShmCommBuf=(void *)&ShmBufStorageVector[0];
|
||||
|
||||
@ -198,7 +198,44 @@ void CartesianCommunicator::Init(int *argc, char ***argv) {
|
||||
ShmCommBuf = 0;
|
||||
ShmCommBufs.resize(ShmSize);
|
||||
|
||||
#if 1
|
||||
////////////////////////////////////////////////////////////////////////////////////////////
|
||||
// Hugetlbf and others map filesystems as mappable huge pages
|
||||
////////////////////////////////////////////////////////////////////////////////////////////
|
||||
#ifdef GRID_MPI3_SHMMMAP
|
||||
char shm_name [NAME_MAX];
|
||||
for(int r=0;r<ShmSize;r++){
|
||||
|
||||
size_t size = CartesianCommunicator::MAX_MPI_SHM_BYTES;
|
||||
sprintf(shm_name,GRID_SHM_PATH "/Grid_mpi3_shm_%d_%d",GroupRank,r);
|
||||
//sprintf(shm_name,"/var/lib/hugetlbfs/group/wheel/pagesize-2MB/" "Grid_mpi3_shm_%d_%d",GroupRank,r);
|
||||
// printf("Opening file %s \n",shm_name);
|
||||
int fd=open(shm_name,O_RDWR|O_CREAT,0666);
|
||||
if ( fd == -1) {
|
||||
printf("open %s failed\n",shm_name);
|
||||
perror("open hugetlbfs");
|
||||
exit(0);
|
||||
}
|
||||
|
||||
int mmap_flag = MAP_SHARED |MAP_POPULATE;
|
||||
#ifdef MAP_HUGETLB
|
||||
if ( Hugepages ) mmap_flag |= MAP_HUGETLB;
|
||||
#endif
|
||||
void *ptr = (void *) mmap(NULL, MAX_MPI_SHM_BYTES, PROT_READ | PROT_WRITE, mmap_flag,fd, 0);
|
||||
if ( ptr == (void *)MAP_FAILED ) {
|
||||
printf("mmap %s failed\n",shm_name);
|
||||
perror("failed mmap"); assert(0);
|
||||
}
|
||||
assert(((uint64_t)ptr&0x3F)==0);
|
||||
ShmCommBufs[r] =ptr;
|
||||
|
||||
}
|
||||
#endif
|
||||
////////////////////////////////////////////////////////////////////////////////////////////
|
||||
// POSIX SHMOPEN ; as far as I know Linux does not allow EXPLICIT HugePages with this case
|
||||
// tmpfs (Larry Meadows says) does not support explicit huge page, and this is used for
|
||||
// the posix shm virtual file system
|
||||
////////////////////////////////////////////////////////////////////////////////////////////
|
||||
#ifdef GRID_MPI3_SHMOPEN
|
||||
char shm_name [NAME_MAX];
|
||||
if ( ShmRank == 0 ) {
|
||||
for(int r=0;r<ShmSize;r++){
|
||||
@ -212,13 +249,13 @@ void CartesianCommunicator::Init(int *argc, char ***argv) {
|
||||
if ( fd < 0 ) { perror("failed shm_open"); assert(0); }
|
||||
ftruncate(fd, size);
|
||||
|
||||
int mmap_flag = MAP_SHARED;
|
||||
int mmap_flag = MAP_SHARED|MAP_POPULATE;
|
||||
#ifdef MAP_HUGETLB
|
||||
if (Hugepages) mmap_flag |= MAP_HUGETLB;
|
||||
#endif
|
||||
void * ptr = mmap(NULL,size, PROT_READ | PROT_WRITE, mmap_flag, fd, 0);
|
||||
|
||||
if ( ptr == MAP_FAILED ) { perror("failed mmap"); assert(0); }
|
||||
if ( ptr == (void * )MAP_FAILED ) { perror("failed mmap"); assert(0); }
|
||||
assert(((uint64_t)ptr&0x3F)==0);
|
||||
|
||||
// Experiments; Experiments; Try to force numa domain on the shm segment if we have numaif.h
|
||||
@ -240,7 +277,7 @@ void CartesianCommunicator::Init(int *argc, char ***argv) {
|
||||
if (ierr && (page==0)) perror("numa relocate command failed");
|
||||
}
|
||||
#endif
|
||||
ShmCommBufs[r] =ptr;
|
||||
ShmCommBufs[r] =ptr;
|
||||
|
||||
}
|
||||
}
|
||||
@ -262,25 +299,32 @@ void CartesianCommunicator::Init(int *argc, char ***argv) {
|
||||
ShmCommBufs[r] =ptr;
|
||||
}
|
||||
}
|
||||
|
||||
#else
|
||||
#endif
|
||||
////////////////////////////////////////////////////////////////////////////////////////////
|
||||
// SHMGET SHMAT and SHM_HUGETLB flag
|
||||
////////////////////////////////////////////////////////////////////////////////////////////
|
||||
#ifdef GRID_MPI3_SHMGET
|
||||
std::vector<int> shmids(ShmSize);
|
||||
|
||||
if ( ShmRank == 0 ) {
|
||||
for(int r=0;r<ShmSize;r++){
|
||||
size_t size = CartesianCommunicator::MAX_MPI_SHM_BYTES;
|
||||
key_t key = 0x4545 + r;
|
||||
key_t key = IPC_PRIVATE;
|
||||
int flags = IPC_CREAT | SHM_R | SHM_W;
|
||||
#ifdef SHM_HUGETLB
|
||||
flags|=SHM_HUGETLB;
|
||||
if (Hugepages) flags|=SHM_HUGETLB;
|
||||
#endif
|
||||
if ((shmids[r]= shmget(key,size, flags)) < 0) {
|
||||
if ((shmids[r]= shmget(key,size, flags)) ==-1) {
|
||||
int errsv = errno;
|
||||
printf("Errno %d\n",errsv);
|
||||
printf("key %d\n",key);
|
||||
printf("size %lld\n",size);
|
||||
printf("flags %d\n",flags);
|
||||
perror("shmget");
|
||||
exit(1);
|
||||
} else {
|
||||
printf("shmid: 0x%x\n", shmids[r]);
|
||||
}
|
||||
printf("shmid: 0x%x\n", shmids[r]);
|
||||
}
|
||||
}
|
||||
MPI_Barrier(ShmComm);
|
||||
|
||||
@ -219,7 +219,8 @@ void Grid_init(int *argc,char ***argv)
|
||||
int MB;
|
||||
arg= GridCmdOptionPayload(*argv,*argv+*argc,"--shm");
|
||||
GridCmdOptionInt(arg,MB);
|
||||
CartesianCommunicator::MAX_MPI_SHM_BYTES = MB*1024*1024;
|
||||
uint64_t MB64 = MB;
|
||||
CartesianCommunicator::MAX_MPI_SHM_BYTES = MB64*1024LL*1024LL;
|
||||
}
|
||||
|
||||
if( GridCmdOptionExists(*argv,*argv+*argc,"--shm-hugepages") ){
|
||||
|
||||
Loading…
Reference in New Issue
Block a user