Summit jsrun GPU mapping updates. Conffigure with --enable-jsrun

Grid/communicator/SharedMemory.h

@@ -41,9 +41,6 @@ Author: Peter Boyle <paboyle@ph.ed.ac.uk>
 #include <sys/shm.h>
 #include <sys/mman.h>
 #include <zlib.h>
-#ifdef HAVE_NUMAIF_H
-#include <numaif.h>
-#endif
 
 NAMESPACE_BEGIN(Grid);
 
@@ -99,6 +96,7 @@ public:
   static void OptimalCommunicator            (const Coordinate &processors,Grid_MPI_Comm & optimal_comm);  // Turns MPI_COMM_WORLD into right layout for Cartesian
   static void OptimalCommunicatorHypercube   (const Coordinate &processors,Grid_MPI_Comm & optimal_comm);  // Turns MPI_COMM_WORLD into right layout for Cartesian
   static void OptimalCommunicatorSharedMemory(const Coordinate &processors,Grid_MPI_Comm & optimal_comm);  // Turns MPI_COMM_WORLD into right layout for Cartesian
+  static void GetShmDims(const Coordinate &WorldDims,Coordinate &ShmDims);
   ///////////////////////////////////////////////////
   // Provide shared memory facilities off comm world
   ///////////////////////////////////////////////////

Grid/communicator/SharedMemoryMPI.cc

@@ -155,6 +155,37 @@ void GlobalSharedMemory::OptimalCommunicator(const Coordinate &processors,Grid_M
   if(nscan==3 && HPEhypercube ) OptimalCommunicatorHypercube(processors,optimal_comm);
   else                          OptimalCommunicatorSharedMemory(processors,optimal_comm);
 }
+static inline int divides(int a,int b)
+{
+  return ( b == ( (b/a)*a ) );
+}
+void GlobalSharedMemory::GetShmDims(const Coordinate &WorldDims,Coordinate &ShmDims)
+{
+  ////////////////////////////////////////////////////////////////
+  // Assert power of two shm_size.
+  ////////////////////////////////////////////////////////////////
+  int log2size = Log2Size(WorldShmSize,MAXLOG2RANKSPERNODE);
+  assert(log2size != -1);
+
+  int ndimension = WorldDims.size();
+  ShmDims=Coordinate(ndimension,1);
+
+  std::vector<int> primes({2,3,5});
+
+  int dim = 0;
+  int AutoShmSize = 1;
+  while(AutoShmSize != WorldShmSize) {
+    for(int p=0;p<primes.size();p++) {
+      int prime=primes[p];
+      if ( divides(prime,WorldDims[dim]/ShmDims[dim]) ) {
+	AutoShmSize*=prime;
+	ShmDims[dim]*=prime;
+	break;
+      }
+    }
+    dim=(dim+1) %ndimension;
+  }
+}
 void GlobalSharedMemory::OptimalCommunicatorHypercube(const Coordinate &processors,Grid_MPI_Comm & optimal_comm)
 {
   ////////////////////////////////////////////////////////////////
@@ -221,17 +252,13 @@ void GlobalSharedMemory::OptimalCommunicatorHypercube(const Coordinate &processo
   // in a maximally symmetrical way
   ////////////////////////////////////////////////////////////////
   int ndimension              = processors.size();
-  std::vector<int> processor_coor(ndimension);
+  Coordinate processor_coor(ndimension);
-  std::vector<int> WorldDims = processors.toVector();
+  Coordinate WorldDims = processors;
-  std::vector<int> ShmDims  (ndimension,1);  std::vector<int> NodeDims (ndimension);
+  Coordinate ShmDims  (ndimension);  Coordinate NodeDims (ndimension);
-  std::vector<int> ShmCoor  (ndimension);    std::vector<int> NodeCoor (ndimension);    std::vector<int> WorldCoor(ndimension);
+  Coordinate ShmCoor  (ndimension);    Coordinate NodeCoor (ndimension);    Coordinate WorldCoor(ndimension);
-  std::vector<int> HyperCoor(ndimension);
+  Coordinate HyperCoor(ndimension);
-  int dim = 0;
+
-  for(int l2=0;l2<log2size;l2++){
+  GetShmDims(WorldDims,ShmDims);
-    while ( (WorldDims[dim] / ShmDims[dim]) <= 1 ) dim=(dim+1)%ndimension;
-    ShmDims[dim]*=2;
-    dim=(dim+1)%ndimension;
-    }
 
   ////////////////////////////////////////////////////////////////
   // Establish torus of processes and nodes with sub-blockings
@@ -281,11 +308,6 @@ void GlobalSharedMemory::OptimalCommunicatorHypercube(const Coordinate &processo
 }
 void GlobalSharedMemory::OptimalCommunicatorSharedMemory(const Coordinate &processors,Grid_MPI_Comm & optimal_comm)
 {
-  ////////////////////////////////////////////////////////////////
-  // Assert power of two shm_size.
-  ////////////////////////////////////////////////////////////////
-  int log2size = Log2Size(WorldShmSize,MAXLOG2RANKSPERNODE);
-  assert(log2size != -1);
 
   ////////////////////////////////////////////////////////////////
   // Identify subblock of ranks on node spreading across dims
@@ -293,15 +315,10 @@ void GlobalSharedMemory::OptimalCommunicatorSharedMemory(const Coordinate &proce
   ////////////////////////////////////////////////////////////////
   int ndimension              = processors.size();
   Coordinate processor_coor(ndimension);
-  Coordinate WorldDims = processors; Coordinate ShmDims(ndimension,1);  Coordinate NodeDims (ndimension);
+  Coordinate WorldDims = processors; Coordinate ShmDims(ndimension);  Coordinate NodeDims (ndimension);
   Coordinate ShmCoor(ndimension);    Coordinate NodeCoor(ndimension);   Coordinate WorldCoor(ndimension);
-  int dim = 0;
-  for(int l2=0;l2<log2size;l2++){
-    while ( (WorldDims[dim] / ShmDims[dim]) <= 1 ) dim=(dim+1)%ndimension;
-    ShmDims[dim]*=2;
-    dim=(dim+1)%ndimension;
-  }
 
+  GetShmDims(WorldDims,ShmDims);
   ////////////////////////////////////////////////////////////////
   // Establish torus of processes and nodes with sub-blockings
   ////////////////////////////////////////////////////////////////
@@ -418,7 +435,11 @@ void GlobalSharedMemory::SharedMemoryAllocate(uint64_t bytes, int flags)
   // e.g. DGX1, supermicro board, 
   //////////////////////////////////////////////////////////////////////////////////////////////////////////
   //  cudaDeviceGetP2PAttribute(&perfRank, cudaDevP2PAttrPerformanceRank, device1, device2);
+#ifdef GRID_IBM_SUMMIT
+  std::cout << header << "flag IBM_SUMMIT disabled CUDA set device: ensure jsrun is used correctly" <<std::endl;
+#else
   cudaSetDevice(WorldShmRank);
+#endif
   ///////////////////////////////////////////////////////////////////////////////////////////////////////////
   // Each MPI rank should allocate our own buffer
   ///////////////////////////////////////////////////////////////////////////////////////////////////////////

Grid/util/Init.cc

@@ -292,7 +292,7 @@ void GridGpuInit(void)
   gpu_props = new cudaDeviceProp[nDevices];
 
   char * localRankStr = NULL;
-  int rank = 0, device = 0, world_rank=0; 
+  int rank = 0, world_rank=0; 
 #define ENV_LOCAL_RANK_OMPI    "OMPI_COMM_WORLD_LOCAL_RANK"
 #define ENV_LOCAL_RANK_MVAPICH "MV2_COMM_WORLD_LOCAL_RANK"
 #define ENV_RANK_OMPI          "OMPI_COMM_WORLD_RANK"
@@ -301,23 +301,16 @@ void GridGpuInit(void)
   if ((localRankStr = getenv(ENV_LOCAL_RANK_OMPI)) != NULL)
   {
     rank = atoi(localRankStr);		
-    device = rank %nDevices;
   }
   if ((localRankStr = getenv(ENV_LOCAL_RANK_MVAPICH)) != NULL)
   {
     rank = atoi(localRankStr);		
-    device = rank %nDevices;
   }
   if ((localRankStr = getenv(ENV_RANK_OMPI   )) != NULL) { world_rank = atoi(localRankStr);}
   if ((localRankStr = getenv(ENV_RANK_MVAPICH)) != NULL) { world_rank = atoi(localRankStr);}
 
-  cudaSetDevice(device);
   if ( world_rank == 0 ) {
     GridBanner();
-    printf("GpuInit: ================================================\n");
-    printf("GpuInit: Setting up Cuda Device map before first MPI call\n",nDevices);
-    printf("GpuInit: ================================================\n");
-    printf("GpuInit: Cuda reports %d GPUs on MPI rank 0\n",nDevices);
   }
 
   for (int i = 0; i < nDevices; i++) {
@@ -325,7 +318,6 @@ void GridGpuInit(void)
 #define GPU_PROP_FMT(canMapHostMemory,FMT)     printf("GpuInit:   " #canMapHostMemory ": " FMT" \n",prop.canMapHostMemory);
 #define GPU_PROP(canMapHostMemory)             GPU_PROP_FMT(canMapHostMemory,"%d");
     
-    //      cudaGetDeviceProperties(&prop, i);
     cudaGetDeviceProperties(&gpu_props[i], i);
     if ( world_rank == 0) {
       cudaDeviceProp prop; 
@@ -334,15 +326,13 @@ void GridGpuInit(void)
       printf("GpuInit: Device Number    : %d\n", i);
       printf("GpuInit: ========================\n");
       printf("GpuInit: Device identifier: %s\n", prop.name);
-      //      printf("GpuInit:   Peak Memory Bandwidth (GB/s): %f\n",(float)2.0*prop.memoryClockRate*(prop.memoryBusWidth/8)/1.0e6);
+
       GPU_PROP(managedMemory);
       GPU_PROP(isMultiGpuBoard);
       GPU_PROP(warpSize);
-#if 0
+      //      GPU_PROP(unifiedAddressing);
-      GPU_PROP(unifiedAddressing);
+      //      GPU_PROP(l2CacheSize);
-      GPU_PROP(l2CacheSize);
+      //      GPU_PROP(singleToDoublePrecisionPerfRatio);
-      GPU_PROP(singleToDoublePrecisionPerfRatio);
-#endif
     }
   }
   if ( world_rank == 0 ) {

configure.ac

@@ -67,7 +67,6 @@ AC_CHECK_HEADERS(malloc/malloc.h)
 AC_CHECK_HEADERS(malloc.h)
 AC_CHECK_HEADERS(endian.h)
 AC_CHECK_HEADERS(execinfo.h)
-AC_CHECK_HEADERS(numaif.h)
 AC_CHECK_DECLS([ntohll],[], [], [[#include <arpa/inet.h>]])
 AC_CHECK_DECLS([be64toh],[], [], [[#include <arpa/inet.h>]])
 
@@ -136,6 +135,18 @@ case ${ac_SFW_FP16} in
       AC_MSG_ERROR(["SFW FP16 option not supported ${ac_SFW_FP16}"]);;
 esac
 
+############### SUMMIT JSRUN
+AC_ARG_ENABLE([jsrun],
+    [AC_HELP_STRING([--enable-jsrun=yes|no], [enable IBMs jsrun resource manager for SUMMIT])],
+    [ac_JSRUN=${enable_jsrun}], [ac_JSRUN=no])
+case ${ac_JSRUN} in
+    yes)
+      AC_DEFINE([GRID_IBM_SUMMIT],[1],[Let JSRUN manage the GPU device allocation]);;
+    no);;
+    *)
+      AC_MSG_ERROR(["JSRUN option not supported ${ac_JSRUN}"]);;
+esac
+
 ############### Intel libraries
 AC_ARG_ENABLE([mkl],
     [AC_HELP_STRING([--enable-mkl=yes|no|prefix], [enable Intel MKL for LAPACK & FFTW])],
@@ -173,19 +184,6 @@ AC_ARG_WITH([hdf5],
     [AM_CXXFLAGS="-I$with_hdf5/include $AM_CXXFLAGS"]
     [AM_LDFLAGS="-L$with_hdf5/lib $AM_LDFLAGS"])
 
-############### first-touch
-AC_ARG_ENABLE([numa],
-    [AC_HELP_STRING([--enable-numa=yes|no|prefix], [enable first touch numa opt])],
-    [ac_NUMA=${enable_NUMA}],[ac_NUMA=no])
-
-case ${ac_NUMA} in
-    no)
-        ;;
-    yes)
-        AC_DEFINE([GRID_NUMA],[1],[First touch numa locality]);;
-    *)
-        AC_DEFINE([GRID_NUMA],[1],[First touch numa locality]);;
-esac
 
 ############### Checks for library functions
 CXXFLAGS_CPY=$CXXFLAGS
@@ -241,10 +239,6 @@ AC_SEARCH_LIBS([crc32], [z],
                [have_zlib=true] [LIBS="${LIBS} -lz"],
 	       [AC_MSG_ERROR(zlib library was not found in your system.)])
 
-AC_SEARCH_LIBS([move_pages], [numa],
-               [AC_DEFINE([HAVE_LIBNUMA], [1], [Define to 1 if you have the `LIBNUMA' library])]
-               [have_libnuma=true] [LIBS="${LIBS} -lnuma"],
-	       [AC_MSG_WARN(libnuma library was not found in your system. Some optimisations will not apply)])
 
 AC_SEARCH_LIBS([H5Fopen], [hdf5_cpp],
                [AC_DEFINE([HAVE_HDF5], [1], [Define to 1 if you have the `HDF5' library])]
@@ -263,7 +257,7 @@ AC_ARG_ENABLE([gen-simd-width],
             [AS_HELP_STRING([--enable-gen-simd-width=size],
             [size (in bytes) of the generic SIMD vectors (default: 32)])],
             [ac_gen_simd_width=$enable_gen_simd_width],
-            [ac_gen_simd_width=32])
+            [ac_gen_simd_width=64])
 
 AC_ARG_ENABLE([gen-scalar],
             [AS_HELP_STRING([--enable-gen-scalar=yes|no],