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mirror of https://github.com/paboyle/Grid.git synced 2025-06-17 15:27:06 +01:00

Hadrons: moving Hadrons to root directory, build system improvements

This commit is contained in:
2018-08-28 15:00:40 +01:00
parent 5f206df775
commit fb7d021b9d
499 changed files with 429 additions and 846 deletions

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/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: ./lib/qcd/hmc/BaseCheckpointer.h
Copyright (C) 2015
Author: Guido Cossu <guido.cossu@ed.ac.uk>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution
directory
*************************************************************************************/
/* END LEGAL */
#ifndef BASE_CHECKPOINTER
#define BASE_CHECKPOINTER
namespace Grid {
namespace QCD {
class CheckpointerParameters : Serializable {
public:
GRID_SERIALIZABLE_CLASS_MEMBERS(CheckpointerParameters,
std::string, config_prefix,
std::string, rng_prefix,
int, saveInterval,
std::string, format, );
CheckpointerParameters(std::string cf = "cfg", std::string rn = "rng",
int savemodulo = 1, const std::string &f = "IEEE64BIG")
: config_prefix(cf),
rng_prefix(rn),
saveInterval(savemodulo),
format(f){};
template <class ReaderClass >
CheckpointerParameters(Reader<ReaderClass> &Reader) {
read(Reader, "Checkpointer", *this);
}
};
//////////////////////////////////////////////////////////////////////////////
// Base class for checkpointers
template <class Impl>
class BaseHmcCheckpointer : public HmcObservable<typename Impl::Field> {
public:
void build_filenames(int traj, CheckpointerParameters &Params,
std::string &conf_file, std::string &rng_file) {
{
std::ostringstream os;
os << Params.rng_prefix << "." << traj;
rng_file = os.str();
}
{
std::ostringstream os;
os << Params.config_prefix << "." << traj;
conf_file = os.str();
}
}
void check_filename(const std::string &filename){
std::ifstream f(filename.c_str());
if(!f.good()){
std::cout << GridLogError << "Filename " << filename << " not found. Aborting. " << std::endl;
abort();
};
}
virtual void initialize(const CheckpointerParameters &Params) = 0;
virtual void CheckpointRestore(int traj, typename Impl::Field &U,
GridSerialRNG &sRNG,
GridParallelRNG &pRNG) = 0;
}; // class BaseHmcCheckpointer
///////////////////////////////////////////////////////////////////////////////
}
}
#endif

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/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: ./lib/qcd/hmc/BinaryCheckpointer.h
Copyright (C) 2016
Author: Guido Cossu <guido.cossu@ed.ac.uk>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution
directory
*************************************************************************************/
/* END LEGAL */
#ifndef BINARY_CHECKPOINTER
#define BINARY_CHECKPOINTER
#include <iostream>
#include <sstream>
#include <string>
namespace Grid {
namespace QCD {
// Simple checkpointer, only binary file
template <class Impl>
class BinaryHmcCheckpointer : public BaseHmcCheckpointer<Impl> {
private:
CheckpointerParameters Params;
public:
INHERIT_FIELD_TYPES(Impl); // Gets the Field type, a Lattice object
// Extract types from the Field
typedef typename Field::vector_object vobj;
typedef typename vobj::scalar_object sobj;
typedef typename getPrecision<sobj>::real_scalar_type sobj_stype;
typedef typename sobj::DoublePrecision sobj_double;
BinaryHmcCheckpointer(const CheckpointerParameters &Params_) {
initialize(Params_);
}
void initialize(const CheckpointerParameters &Params_) { Params = Params_; }
void truncate(std::string file) {
std::ofstream fout(file, std::ios::out);
fout.close();
}
void TrajectoryComplete(int traj, Field &U, GridSerialRNG &sRNG, GridParallelRNG &pRNG) {
if ((traj % Params.saveInterval) == 0) {
std::string config, rng;
this->build_filenames(traj, Params, config, rng);
uint32_t nersc_csum;
uint32_t scidac_csuma;
uint32_t scidac_csumb;
BinarySimpleUnmunger<sobj_double, sobj> munge;
truncate(rng);
BinaryIO::writeRNG(sRNG, pRNG, rng, 0,nersc_csum,scidac_csuma,scidac_csumb);
truncate(config);
BinaryIO::writeLatticeObject<vobj, sobj_double>(U, config, munge, 0, Params.format,
nersc_csum,scidac_csuma,scidac_csumb);
std::cout << GridLogMessage << "Written Binary Configuration " << config
<< " checksum " << std::hex
<< nersc_csum <<"/"
<< scidac_csuma <<"/"
<< scidac_csumb
<< std::dec << std::endl;
}
};
void CheckpointRestore(int traj, Field &U, GridSerialRNG &sRNG, GridParallelRNG &pRNG) {
std::string config, rng;
this->build_filenames(traj, Params, config, rng);
this->check_filename(rng);
this->check_filename(config);
BinarySimpleMunger<sobj_double, sobj> munge;
uint32_t nersc_csum;
uint32_t scidac_csuma;
uint32_t scidac_csumb;
BinaryIO::readRNG(sRNG, pRNG, rng, 0,nersc_csum,scidac_csuma,scidac_csumb);
BinaryIO::readLatticeObject<vobj, sobj_double>(U, config, munge, 0, Params.format,
nersc_csum,scidac_csuma,scidac_csumb);
std::cout << GridLogMessage << "Read Binary Configuration " << config
<< " checksums " << std::hex << nersc_csum<<"/"<<scidac_csuma<<"/"<<scidac_csumb
<< std::dec << std::endl;
};
};
}
}
#endif

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/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: ./lib/qcd/action/gauge/WilsonGaugeAction.h
Copyright (C) 2016
Author: Guido Cossu <guido.cossu@ed.ac.uk>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution
directory
*************************************************************************************/
/* END LEGAL */
#ifndef CP_MODULES_H
#define CP_MODULES_H
// FIXME Reorganize QCD namespace
namespace Grid {
////////////////////////////////////////////////////////////////////////
// Checkpoint module, owns the Checkpointer
////////////////////////////////////////////////////////////////////////
template <class ImplementationPolicy>
class CheckPointerModule: public Parametrized<QCD::CheckpointerParameters>, public HMCModuleBase< QCD::BaseHmcCheckpointer<ImplementationPolicy> > {
public:
std::unique_ptr<QCD::BaseHmcCheckpointer<ImplementationPolicy> > CheckPointPtr;
typedef QCD::CheckpointerParameters APar;
typedef HMCModuleBase< QCD::BaseHmcCheckpointer<ImplementationPolicy> > Base;
typedef typename Base::Product Product;
CheckPointerModule(APar Par): Parametrized<APar>(Par) {}
template <class ReaderClass>
CheckPointerModule(Reader<ReaderClass>& Reader) : Parametrized<APar>(Reader){};
virtual void print_parameters(){
std::cout << this->Par_ << std::endl;
}
Product* getPtr() {
if (!CheckPointPtr) initialize();
return CheckPointPtr.get();
}
private:
virtual void initialize() = 0;
};
template <char const *str, class ImplementationPolicy, class ReaderClass >
class HMC_CPModuleFactory
: public Factory < HMCModuleBase< QCD::BaseHmcCheckpointer<ImplementationPolicy> > , Reader<ReaderClass> > {
public:
typedef Reader<ReaderClass> TheReader;
// use SINGLETON FUNCTOR MACRO HERE
HMC_CPModuleFactory(const HMC_CPModuleFactory& e) = delete;
void operator=(const HMC_CPModuleFactory& e) = delete;
static HMC_CPModuleFactory& getInstance(void) {
static HMC_CPModuleFactory e;
return e;
}
private:
HMC_CPModuleFactory(void) = default;
std::string obj_type() const {
return std::string(str);
}
};
/////////////////////////////////////////////////////////////////////
// Concrete classes
/////////////////////////////////////////////////////////////////////
namespace QCD{
template<class ImplementationPolicy>
class BinaryCPModule: public CheckPointerModule< ImplementationPolicy> {
typedef CheckPointerModule< ImplementationPolicy> CPBase;
using CPBase::CPBase; // for constructors
// acquire resource
virtual void initialize(){
this->CheckPointPtr.reset(new BinaryHmcCheckpointer<ImplementationPolicy>(this->Par_));
}
};
template<class ImplementationPolicy>
class NerscCPModule: public CheckPointerModule< ImplementationPolicy> {
typedef CheckPointerModule< ImplementationPolicy> CPBase;
using CPBase::CPBase; // for constructors inheritance
// acquire resource
virtual void initialize(){
this->CheckPointPtr.reset(new NerscHmcCheckpointer<ImplementationPolicy>(this->Par_));
}
};
#ifdef HAVE_LIME
template<class ImplementationPolicy>
class ILDGCPModule: public CheckPointerModule< ImplementationPolicy> {
typedef CheckPointerModule< ImplementationPolicy> CPBase;
using CPBase::CPBase; // for constructors
// acquire resource
virtual void initialize(){
this->CheckPointPtr.reset(new ILDGHmcCheckpointer<ImplementationPolicy>(this->Par_));
}
};
template<class ImplementationPolicy, class Metadata>
class ScidacCPModule: public CheckPointerModule< ImplementationPolicy> {
typedef CheckPointerModule< ImplementationPolicy> CPBase;
Metadata M;
// acquire resource
virtual void initialize(){
this->CheckPointPtr.reset(new ScidacHmcCheckpointer<ImplementationPolicy, Metadata>(this->Par_, M));
}
public:
ScidacCPModule(typename CPBase::APar Par, Metadata M_):M(M_), CPBase(Par) {}
template <class ReaderClass>
ScidacCPModule(Reader<ReaderClass>& Reader) : Parametrized<typename CPBase::APar>(Reader), M(Reader){};
};
#endif
}// QCD temporarily here
extern char cp_string[];
/*
// use macros?
static Registrar<QCD::BinaryCPModule<QCD::PeriodicGimplR>, HMC_CPModuleFactory<cp_string, QCD::PeriodicGimplR, XmlReader> > __CPBinarymodXMLInit("Binary");
static Registrar<QCD::NerscCPModule<QCD::PeriodicGimplR> , HMC_CPModuleFactory<cp_string, QCD::PeriodicGimplR, XmlReader> > __CPNerscmodXMLInit("Nersc");
#ifdef HAVE_LIME
static Registrar<QCD::ILDGCPModule<QCD::PeriodicGimplR> , HMC_CPModuleFactory<cp_string, QCD::PeriodicGimplR, XmlReader> > __CPILDGmodXMLInit("ILDG");
#endif
*/
}// Grid
#endif //CP_MODULES_H

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/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: ./lib/qcd/action/gauge/WilsonGaugeAction.h
Copyright (C) 2016
Author: Guido Cossu <guido.cossu@ed.ac.uk>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution
directory
*************************************************************************************/
/* END LEGAL */
#ifndef CHECKPOINTERS_H
#define CHECKPOINTERS_H
#include <Grid/qcd/hmc/checkpointers/BaseCheckpointer.h>
#include <Grid/qcd/hmc/checkpointers/NerscCheckpointer.h>
#include <Grid/qcd/hmc/checkpointers/BinaryCheckpointer.h>
#include <Grid/qcd/hmc/checkpointers/ILDGCheckpointer.h>
#include <Grid/qcd/hmc/checkpointers/ScidacCheckpointer.h>
//#include <Grid/qcd/hmc/checkpointers/CheckPointerModules.h>
#endif // CHECKPOINTERS_H

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/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: ./lib/qcd/hmc/ILDGCheckpointer.h
Copyright (C) 2016
Author: Guido Cossu <guido.cossu@ed.ac.uk>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution
directory
*************************************************************************************/
/* END LEGAL */
#ifndef ILDG_CHECKPOINTER
#define ILDG_CHECKPOINTER
#ifdef HAVE_LIME
#include <iostream>
#include <sstream>
#include <string>
namespace Grid {
namespace QCD {
// Only for Gauge fields
template <class Implementation>
class ILDGHmcCheckpointer : public BaseHmcCheckpointer<Implementation> {
private:
CheckpointerParameters Params;
public:
INHERIT_GIMPL_TYPES(Implementation);
ILDGHmcCheckpointer(const CheckpointerParameters &Params_) { initialize(Params_); }
void initialize(const CheckpointerParameters &Params_) {
Params = Params_;
// check here that the format is valid
int ieee32big = (Params.format == std::string("IEEE32BIG"));
int ieee32 = (Params.format == std::string("IEEE32"));
int ieee64big = (Params.format == std::string("IEEE64BIG"));
int ieee64 = (Params.format == std::string("IEEE64"));
if (!(ieee64big || ieee32 || ieee32big || ieee64)) {
std::cout << GridLogError << "Unrecognized file format " << Params.format
<< std::endl;
std::cout << GridLogError
<< "Allowed: IEEE32BIG | IEEE32 | IEEE64BIG | IEEE64"
<< std::endl;
exit(1);
}
}
void TrajectoryComplete(int traj, GaugeField &U, GridSerialRNG &sRNG,
GridParallelRNG &pRNG) {
if ((traj % Params.saveInterval) == 0) {
std::string config, rng;
this->build_filenames(traj, Params, config, rng);
GridBase *grid = U._grid;
uint32_t nersc_csum,scidac_csuma,scidac_csumb;
BinaryIO::writeRNG(sRNG, pRNG, rng, 0,nersc_csum,scidac_csuma,scidac_csumb);
IldgWriter _IldgWriter(grid->IsBoss());
_IldgWriter.open(config);
_IldgWriter.writeConfiguration(U, traj, config, config);
_IldgWriter.close();
std::cout << GridLogMessage << "Written ILDG Configuration on " << config
<< " checksum " << std::hex
<< nersc_csum<<"/"
<< scidac_csuma<<"/"
<< scidac_csumb
<< std::dec << std::endl;
}
};
void CheckpointRestore(int traj, GaugeField &U, GridSerialRNG &sRNG,
GridParallelRNG &pRNG) {
std::string config, rng;
this->build_filenames(traj, Params, config, rng);
this->check_filename(rng);
this->check_filename(config);
uint32_t nersc_csum,scidac_csuma,scidac_csumb;
BinaryIO::readRNG(sRNG, pRNG, rng, 0,nersc_csum,scidac_csuma,scidac_csumb);
FieldMetaData header;
IldgReader _IldgReader;
_IldgReader.open(config);
_IldgReader.readConfiguration(U,header); // format from the header
_IldgReader.close();
std::cout << GridLogMessage << "Read ILDG Configuration from " << config
<< " checksum " << std::hex
<< nersc_csum<<"/"
<< scidac_csuma<<"/"
<< scidac_csumb
<< std::dec << std::endl;
};
};
}
}
#endif // HAVE_LIME
#endif // ILDG_CHECKPOINTER

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/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: ./lib/qcd/hmc/NerscCheckpointer.h
Copyright (C) 2015
Author: paboyle <paboyle@ph.ed.ac.uk>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution
directory
*************************************************************************************/
/* END LEGAL */
#ifndef NERSC_CHECKPOINTER
#define NERSC_CHECKPOINTER
#include <iostream>
#include <sstream>
#include <string>
namespace Grid {
namespace QCD {
// Only for Gauge fields
template <class Gimpl>
class NerscHmcCheckpointer : public BaseHmcCheckpointer<Gimpl> {
private:
CheckpointerParameters Params;
public:
INHERIT_GIMPL_TYPES(Gimpl); // only for gauge configurations
NerscHmcCheckpointer(const CheckpointerParameters &Params_) { initialize(Params_); }
void initialize(const CheckpointerParameters &Params_) {
Params = Params_;
Params.format = "IEEE64BIG"; // fixed, overwrite any other choice
}
void TrajectoryComplete(int traj, GaugeField &U, GridSerialRNG &sRNG,
GridParallelRNG &pRNG) {
if ((traj % Params.saveInterval) == 0) {
std::string config, rng;
this->build_filenames(traj, Params, config, rng);
int precision32 = 1;
int tworow = 0;
NerscIO::writeRNGState(sRNG, pRNG, rng);
NerscIO::writeConfiguration(U, config, tworow, precision32);
}
};
void CheckpointRestore(int traj, GaugeField &U, GridSerialRNG &sRNG,
GridParallelRNG &pRNG) {
std::string config, rng;
this->build_filenames(traj, Params, config, rng);
this->check_filename(rng);
this->check_filename(config);
FieldMetaData header;
NerscIO::readRNGState(sRNG, pRNG, header, rng);
NerscIO::readConfiguration(U, header, config);
};
};
}
}
#endif

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/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: ./lib/qcd/hmc/ScidacCheckpointer.h
Copyright (C) 2018
Author: Guido Cossu <guido.cossu@ed.ac.uk>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution
directory
*************************************************************************************/
/* END LEGAL */
#ifndef SCIDAC_CHECKPOINTER
#define SCIDAC_CHECKPOINTER
#ifdef HAVE_LIME
#include <iostream>
#include <sstream>
#include <string>
namespace Grid {
namespace QCD {
// For generic fields
template <class Implementation, class Metadata>
class ScidacHmcCheckpointer : public BaseHmcCheckpointer<Implementation> {
private:
CheckpointerParameters Params;
Metadata MData;
typedef typename Implementation::Field Field;
public:
//INHERIT_GIMPL_TYPES(Implementation);
ScidacHmcCheckpointer(const CheckpointerParameters &Params_) { initialize(Params_); }
ScidacHmcCheckpointer(const CheckpointerParameters &Params_, const Metadata& M_):MData(M_) { initialize(Params_); }
void initialize(const CheckpointerParameters &Params_) {
Params = Params_;
// check here that the format is valid
int ieee32big = (Params.format == std::string("IEEE32BIG"));
int ieee32 = (Params.format == std::string("IEEE32"));
int ieee64big = (Params.format == std::string("IEEE64BIG"));
int ieee64 = (Params.format == std::string("IEEE64"));
if (!(ieee64big || ieee32 || ieee32big || ieee64)) {
std::cout << GridLogError << "Unrecognized file format " << Params.format
<< std::endl;
std::cout << GridLogError
<< "Allowed: IEEE32BIG | IEEE32 | IEEE64BIG | IEEE64"
<< std::endl;
exit(1);
}
}
void TrajectoryComplete(int traj, Field &U, GridSerialRNG &sRNG,
GridParallelRNG &pRNG) {
if ((traj % Params.saveInterval) == 0) {
std::string config, rng;
this->build_filenames(traj, Params, config, rng);
GridBase *grid = U._grid;
uint32_t nersc_csum,scidac_csuma,scidac_csumb;
BinaryIO::writeRNG(sRNG, pRNG, rng, 0,nersc_csum,scidac_csuma,scidac_csumb);
ScidacWriter _ScidacWriter(grid->IsBoss());
_ScidacWriter.open(config);
_ScidacWriter.writeScidacFieldRecord(U, MData);
_ScidacWriter.close();
std::cout << GridLogMessage << "Written Scidac Configuration on " << config << std::endl;
}
};
void CheckpointRestore(int traj, Field &U, GridSerialRNG &sRNG,
GridParallelRNG &pRNG) {
std::string config, rng;
this->build_filenames(traj, Params, config, rng);
this->check_filename(rng);
this->check_filename(config);
uint32_t nersc_csum,scidac_csuma,scidac_csumb;
BinaryIO::readRNG(sRNG, pRNG, rng, 0,nersc_csum,scidac_csuma,scidac_csumb);
Metadata md_content;
ScidacReader _ScidacReader;
_ScidacReader.open(config);
_ScidacReader.readScidacFieldRecord(U,md_content); // format from the header
_ScidacReader.close();
std::cout << GridLogMessage << "Read Scidac Configuration from " << config
<< " checksum " << std::hex
<< nersc_csum<<"/"
<< scidac_csuma<<"/"
<< scidac_csumb
<< std::dec << std::endl;
};
};
}
}
#endif // HAVE_LIME
#endif // ILDG_CHECKPOINTER