Hadrons: moving Hadrons to root directory, build system improvements

Hadrons/Makefile.am

@@ -0,0 +1,33 @@
+lib_LIBRARIES = libHadrons.a
+bin_PROGRAMS  = HadronsXmlRun
+
+include modules.inc
+
+libHadrons_a_SOURCES = \
+    $(modules_cc)      \
+    Application.cc     \
+    Environment.cc     \
+	Exceptions.cc      \
+    Global.cc          \
+    Module.cc		   \
+	VirtualMachine.cc
+libHadrons_adir = $(includedir)/Hadrons
+nobase_libHadrons_a_HEADERS = \
+	$(modules_hpp)            \
+	A2AVectors.hpp            \
+	Application.hpp           \
+	EigenPack.hpp             \
+	Environment.hpp           \
+	Exceptions.hpp            \
+	Factory.hpp               \
+	GeneticScheduler.hpp      \
+	Global.hpp                \
+	Graph.hpp                 \
+	Module.hpp                \
+	Modules.hpp               \
+	ModuleFactory.hpp         \
+	Solver.hpp                \
+	VirtualMachine.hpp
+
+HadronsXmlRun_SOURCES = HadronsXmlRun.cc
+HadronsXmlRun_LDADD   = libHadrons.a -lGrid