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Hadrons: moving Hadrons to root directory, build system improvements

This commit is contained in:
2018-08-28 15:00:40 +01:00
parent 5f206df775
commit fb7d021b9d
499 changed files with 429 additions and 846 deletions

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/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: extras/Hadrons/Modules/MIO/LoadBinary.cc
Copyright (C) 2015-2018
Author: Antonin Portelli <antonin.portelli@me.com>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#include <Hadrons/Modules/MIO/LoadBinary.hpp>
using namespace Grid;
using namespace Hadrons;
using namespace MIO;
template class Grid::Hadrons::MIO::TLoadBinary<GIMPL>;
template class Grid::Hadrons::MIO::TLoadBinary<ScalarNxNAdjImplR<2>>;
template class Grid::Hadrons::MIO::TLoadBinary<ScalarNxNAdjImplR<3>>;
template class Grid::Hadrons::MIO::TLoadBinary<ScalarNxNAdjImplR<4>>;
template class Grid::Hadrons::MIO::TLoadBinary<ScalarNxNAdjImplR<5>>;
template class Grid::Hadrons::MIO::TLoadBinary<ScalarNxNAdjImplR<6>>;

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/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: extras/Hadrons/Modules/MIO/LoadBinary.hpp
Copyright (C) 2015-2018
Author: Antonin Portelli <antonin.portelli@me.com>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#ifndef Hadrons_MIO_LoadBinary_hpp_
#define Hadrons_MIO_LoadBinary_hpp_
#include <Hadrons/Global.hpp>
#include <Hadrons/Module.hpp>
#include <Hadrons/ModuleFactory.hpp>
BEGIN_HADRONS_NAMESPACE
/******************************************************************************
* Load a binary configurations *
******************************************************************************/
BEGIN_MODULE_NAMESPACE(MIO)
class LoadBinaryPar: Serializable
{
public:
GRID_SERIALIZABLE_CLASS_MEMBERS(LoadBinaryPar,
std::string, file,
std::string, format);
};
template <typename Impl>
class TLoadBinary: public Module<LoadBinaryPar>
{
public:
typedef typename Impl::Field Field;
typedef typename Impl::Simd Simd;
typedef typename Field::vector_object vobj;
typedef typename vobj::scalar_object sobj;
typedef typename sobj::DoublePrecision sobj_double;
typedef BinarySimpleMunger<sobj_double, sobj> Munger;
public:
// constructor
TLoadBinary(const std::string name);
// destructor
virtual ~TLoadBinary(void) {};
// dependency relation
virtual std::vector<std::string> getInput(void);
virtual std::vector<std::string> getOutput(void);
// setup
virtual void setup(void);
// execution
virtual void execute(void);
};
MODULE_REGISTER_TMP(LoadBinary, TLoadBinary<GIMPL>, MIO);
MODULE_REGISTER_TMP(LoadBinaryScalarSU2, TLoadBinary<ScalarNxNAdjImplR<2>>, MIO);
MODULE_REGISTER_TMP(LoadBinaryScalarSU3, TLoadBinary<ScalarNxNAdjImplR<3>>, MIO);
MODULE_REGISTER_TMP(LoadBinaryScalarSU4, TLoadBinary<ScalarNxNAdjImplR<4>>, MIO);
MODULE_REGISTER_TMP(LoadBinaryScalarSU5, TLoadBinary<ScalarNxNAdjImplR<5>>, MIO);
MODULE_REGISTER_TMP(LoadBinaryScalarSU6, TLoadBinary<ScalarNxNAdjImplR<6>>, MIO);
/******************************************************************************
* TLoadBinary implementation *
******************************************************************************/
// constructor /////////////////////////////////////////////////////////////////
template <typename Impl>
TLoadBinary<Impl>::TLoadBinary(const std::string name)
: Module<LoadBinaryPar>(name)
{}
// dependencies/products ///////////////////////////////////////////////////////
template <typename Impl>
std::vector<std::string> TLoadBinary<Impl>::getInput(void)
{
std::vector<std::string> in;
return in;
}
template <typename Impl>
std::vector<std::string> TLoadBinary<Impl>::getOutput(void)
{
std::vector<std::string> out = {getName()};
return out;
}
// setup ///////////////////////////////////////////////////////////////////////
template <typename Impl>
void TLoadBinary<Impl>::setup(void)
{
envCreateLat(Field, getName());
}
// execution ///////////////////////////////////////////////////////////////////
template <typename Impl>
void TLoadBinary<Impl>::execute(void)
{
Munger munge;
uint32_t nersc_csum, scidac_csuma, scidac_csumb;
auto &U = envGet(Field, getName());
std::string filename = par().file + "."
+ std::to_string(vm().getTrajectory());
LOG(Message) << "Loading " << par().format
<< " binary configuration from file '" << filename
<< "'" << std::endl;
BinaryIO::readLatticeObject<vobj, sobj_double>(U, filename, munge, 0,
par().format, nersc_csum,
scidac_csuma, scidac_csumb);
LOG(Message) << "Checksums:" << std::endl;
LOG(Message) << " NERSC " << nersc_csum << std::endl;
LOG(Message) << " SciDAC A " << scidac_csuma << std::endl;
LOG(Message) << " SciDAC B " << scidac_csumb << std::endl;
}
END_MODULE_NAMESPACE
END_HADRONS_NAMESPACE
#endif // Hadrons_MIO_LoadBinary_hpp_

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/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: extras/Hadrons/Modules/MIO/LoadCoarseEigenPack.cc
Copyright (C) 2015-2018
Author: Antonin Portelli <antonin.portelli@me.com>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#include <Hadrons/Modules/MIO/LoadCoarseEigenPack.hpp>
using namespace Grid;
using namespace Hadrons;
using namespace MIO;
template class Grid::Hadrons::MIO::TLoadCoarseEigenPack<CoarseFermionEigenPack<FIMPL,HADRONS_DEFAULT_LANCZOS_NBASIS>>;

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/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: extras/Hadrons/Modules/MIO/LoadCoarseEigenPack.hpp
Copyright (C) 2015-2018
Author: Antonin Portelli <antonin.portelli@me.com>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#ifndef Hadrons_MIO_LoadCoarseEigenPack_hpp_
#define Hadrons_MIO_LoadCoarseEigenPack_hpp_
#include <Hadrons/Global.hpp>
#include <Hadrons/Module.hpp>
#include <Hadrons/ModuleFactory.hpp>
#include <Hadrons/EigenPack.hpp>
BEGIN_HADRONS_NAMESPACE
/******************************************************************************
* Load local coherence eigen vectors/values package *
******************************************************************************/
BEGIN_MODULE_NAMESPACE(MIO)
class LoadCoarseEigenPackPar: Serializable
{
public:
GRID_SERIALIZABLE_CLASS_MEMBERS(LoadCoarseEigenPackPar,
std::string, filestem,
bool, multiFile,
unsigned int, sizeFine,
unsigned int, sizeCoarse,
unsigned int, Ls,
std::vector<int>, blockSize);
};
template <typename Pack>
class TLoadCoarseEigenPack: public Module<LoadCoarseEigenPackPar>
{
public:
typedef CoarseEigenPack<typename Pack::Field, typename Pack::CoarseField> BasePack;
template <typename vtype>
using iImplScalar = iScalar<iScalar<iScalar<vtype>>>;
typedef iImplScalar<typename Pack::Field::vector_type> SiteComplex;
public:
// constructor
TLoadCoarseEigenPack(const std::string name);
// destructor
virtual ~TLoadCoarseEigenPack(void) {};
// dependency relation
virtual std::vector<std::string> getInput(void);
virtual std::vector<std::string> getOutput(void);
// setup
virtual void setup(void);
// execution
virtual void execute(void);
};
MODULE_REGISTER_TMP(LoadCoarseFermionEigenPack, ARG(TLoadCoarseEigenPack<CoarseFermionEigenPack<FIMPL, HADRONS_DEFAULT_LANCZOS_NBASIS>>), MIO);
/******************************************************************************
* TLoadCoarseEigenPack implementation *
******************************************************************************/
// constructor /////////////////////////////////////////////////////////////////
template <typename Pack>
TLoadCoarseEigenPack<Pack>::TLoadCoarseEigenPack(const std::string name)
: Module<LoadCoarseEigenPackPar>(name)
{}
// dependencies/products ///////////////////////////////////////////////////////
template <typename Pack>
std::vector<std::string> TLoadCoarseEigenPack<Pack>::getInput(void)
{
std::vector<std::string> in;
return in;
}
template <typename Pack>
std::vector<std::string> TLoadCoarseEigenPack<Pack>::getOutput(void)
{
std::vector<std::string> out = {getName()};
return out;
}
// setup ///////////////////////////////////////////////////////////////////////
template <typename Pack>
void TLoadCoarseEigenPack<Pack>::setup(void)
{
env().createGrid(par().Ls);
env().createCoarseGrid(par().blockSize, par().Ls);
envCreateDerived(BasePack, Pack, getName(), par().Ls, par().sizeFine,
par().sizeCoarse, env().getRbGrid(par().Ls),
env().getCoarseGrid(par().blockSize, par().Ls));
}
// execution ///////////////////////////////////////////////////////////////////
template <typename Pack>
void TLoadCoarseEigenPack<Pack>::execute(void)
{
auto cg = env().getCoarseGrid(par().blockSize, par().Ls);
auto &epack = envGetDerived(BasePack, Pack, getName());
Lattice<SiteComplex> dummy(cg);
epack.read(par().filestem, par().multiFile, vm().getTrajectory());
LOG(Message) << "Block Gramm-Schmidt pass 1"<< std::endl;
blockOrthogonalise(dummy, epack.evec);
LOG(Message) << "Block Gramm-Schmidt pass 2"<< std::endl;
blockOrthogonalise(dummy, epack.evec);
}
END_MODULE_NAMESPACE
END_HADRONS_NAMESPACE
#endif // Hadrons_MIO_LoadCoarseEigenPack_hpp_

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/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: extras/Hadrons/Modules/MIO/LoadEigenPack.cc
Copyright (C) 2015-2018
Author: Antonin Portelli <antonin.portelli@me.com>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#include <Hadrons/Modules/MIO/LoadEigenPack.hpp>
using namespace Grid;
using namespace Hadrons;
using namespace MIO;
template class Grid::Hadrons::MIO::TLoadEigenPack<FermionEigenPack<FIMPL>>;

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/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: extras/Hadrons/Modules/MIO/LoadEigenPack.hpp
Copyright (C) 2015-2018
Author: Antonin Portelli <antonin.portelli@me.com>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#ifndef Hadrons_MIO_LoadEigenPack_hpp_
#define Hadrons_MIO_LoadEigenPack_hpp_
#include <Hadrons/Global.hpp>
#include <Hadrons/Module.hpp>
#include <Hadrons/ModuleFactory.hpp>
#include <Hadrons/EigenPack.hpp>
BEGIN_HADRONS_NAMESPACE
/******************************************************************************
* Load eigen vectors/values package *
******************************************************************************/
BEGIN_MODULE_NAMESPACE(MIO)
class LoadEigenPackPar: Serializable
{
public:
GRID_SERIALIZABLE_CLASS_MEMBERS(LoadEigenPackPar,
std::string, filestem,
bool, multiFile,
unsigned int, size,
unsigned int, Ls);
};
template <typename Pack>
class TLoadEigenPack: public Module<LoadEigenPackPar>
{
public:
typedef EigenPack<typename Pack::Field> BasePack;
public:
// constructor
TLoadEigenPack(const std::string name);
// destructor
virtual ~TLoadEigenPack(void) {};
// dependency relation
virtual std::vector<std::string> getInput(void);
virtual std::vector<std::string> getOutput(void);
// setup
virtual void setup(void);
// execution
virtual void execute(void);
};
MODULE_REGISTER_TMP(LoadFermionEigenPack, TLoadEigenPack<FermionEigenPack<FIMPL>>, MIO);
/******************************************************************************
* TLoadEigenPack implementation *
******************************************************************************/
// constructor /////////////////////////////////////////////////////////////////
template <typename Pack>
TLoadEigenPack<Pack>::TLoadEigenPack(const std::string name)
: Module<LoadEigenPackPar>(name)
{}
// dependencies/products ///////////////////////////////////////////////////////
template <typename Pack>
std::vector<std::string> TLoadEigenPack<Pack>::getInput(void)
{
std::vector<std::string> in;
return in;
}
template <typename Pack>
std::vector<std::string> TLoadEigenPack<Pack>::getOutput(void)
{
std::vector<std::string> out = {getName()};
return out;
}
// setup ///////////////////////////////////////////////////////////////////////
template <typename Pack>
void TLoadEigenPack<Pack>::setup(void)
{
env().createGrid(par().Ls);
envCreateDerived(BasePack, Pack, getName(), par().Ls, par().size,
env().getRbGrid(par().Ls));
}
// execution ///////////////////////////////////////////////////////////////////
template <typename Pack>
void TLoadEigenPack<Pack>::execute(void)
{
auto &epack = envGetDerived(BasePack, Pack, getName());
epack.read(par().filestem, par().multiFile, vm().getTrajectory());
epack.eval.resize(par().size);
}
END_MODULE_NAMESPACE
END_HADRONS_NAMESPACE
#endif // Hadrons_MIO_LoadEigenPack_hpp_

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/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: extras/Hadrons/Modules/MIO/LoadNersc.cc
Copyright (C) 2015-2018
Author: Antonin Portelli <antonin.portelli@me.com>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#include <Hadrons/Modules/MIO/LoadNersc.hpp>
using namespace Grid;
using namespace Hadrons;
using namespace MIO;
/******************************************************************************
* TLoadNersc implementation *
******************************************************************************/
// constructor /////////////////////////////////////////////////////////////////
TLoadNersc::TLoadNersc(const std::string name)
: Module<LoadNerscPar>(name)
{}
// dependencies/products ///////////////////////////////////////////////////////
std::vector<std::string> TLoadNersc::getInput(void)
{
std::vector<std::string> in;
return in;
}
std::vector<std::string> TLoadNersc::getOutput(void)
{
std::vector<std::string> out = {getName()};
return out;
}
// setup ///////////////////////////////////////////////////////////////////////
void TLoadNersc::setup(void)
{
envCreateLat(LatticeGaugeField, getName());
}
// execution ///////////////////////////////////////////////////////////////////
void TLoadNersc::execute(void)
{
FieldMetaData header;
std::string fileName = par().file + "."
+ std::to_string(vm().getTrajectory());
LOG(Message) << "Loading NERSC configuration from file '" << fileName
<< "'" << std::endl;
auto &U = envGet(LatticeGaugeField, getName());
NerscIO::readConfiguration(U, header, fileName);
}

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/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: extras/Hadrons/Modules/MIO/LoadNersc.hpp
Copyright (C) 2015-2018
Author: Antonin Portelli <antonin.portelli@me.com>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#ifndef Hadrons_MIO_LoadNersc_hpp_
#define Hadrons_MIO_LoadNersc_hpp_
#include <Hadrons/Global.hpp>
#include <Hadrons/Module.hpp>
#include <Hadrons/ModuleFactory.hpp>
BEGIN_HADRONS_NAMESPACE
/******************************************************************************
* Load a NERSC configuration *
******************************************************************************/
BEGIN_MODULE_NAMESPACE(MIO)
class LoadNerscPar: Serializable
{
public:
GRID_SERIALIZABLE_CLASS_MEMBERS(LoadNerscPar,
std::string, file);
};
class TLoadNersc: public Module<LoadNerscPar>
{
public:
// constructor
TLoadNersc(const std::string name);
// destructor
virtual ~TLoadNersc(void) {};
// dependency relation
virtual std::vector<std::string> getInput(void);
virtual std::vector<std::string> getOutput(void);
// setup
virtual void setup(void);
// execution
virtual void execute(void);
};
MODULE_REGISTER(LoadNersc, TLoadNersc, MIO);
END_MODULE_NAMESPACE
END_HADRONS_NAMESPACE
#endif // Hadrons_MIO_LoadNersc_hpp_