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Merge branch 'develop' into feature/hirep

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This commit is contained in:
Guido Cossu
2016-08-30 18:21:36 +01:00
parent 005dcc51aa 27f3ecc833
commit fd5614738d
503 changed files with 84592 additions and 1780 deletions
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252
configure vendored
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@ -626,6 +626,13 @@ ac_subst_vars='am__EXEEXT_FALSE
am__EXEEXT_TRUE
LTLIBOBJS
LIBOBJS
enable_latex_docs
enable_html_docs
enable_dot
DOXYGEN_DOC_FALSE
DOXYGEN_DOC_TRUE
DOT
DOXYGEN
USE_LAPACK_LIB_FALSE
USE_LAPACK_LIB_TRUE
USE_LAPACK_FALSE
@ -760,6 +767,10 @@ enable_rng
enable_timers
enable_chroma
enable_lapack
enable_doxygen
enable_dot
enable_html_docs
enable_latex_docs
'
ac_precious_vars='build_alias
host_alias
@ -1421,6 +1432,11 @@ Optional Features:
--enable-timers=yes|no Enable system dependent high res timers
--enable-chroma Expect chroma compiled under c++11
--enable-lapack Enable lapack yes/no
--enable-doxygen enable documentation generation with doxygen (auto)
--enable-dot use 'dot' to generate graphs in doxygen (auto)
--enable-html-docs enable HTML generation with doxygen (yes)
--enable-latex-docs enable LaTeX documentation generation with doxygen
(no)
Some influential environment variables:
CXX C++ compiler command
@ -3171,6 +3187,15 @@ END
fi
ac_sources="lib"
ac_dests="include/Grid "
while test -n "$ac_sources"; do
set $ac_dests; ac_dest=$1; shift; ac_dests=$*
set $ac_sources; ac_source=$1; shift; ac_sources=$*
ac_config_links_1="$ac_config_links_1 $ac_dest:$ac_source"
done
ac_config_links="$ac_config_links $ac_config_links_1"
ac_config_headers="$ac_config_headers lib/Config.h"
@ -6672,7 +6697,6 @@ else
ac_CHROMA=no
fi
case ${ac_CHROMA} in
yes)
echo Enabling tests regressing to Chroma
@ -6737,15 +6761,160 @@ fi
###################################################################
# Checks for doxygen support
# if present enables the "make doxyfile" command
#echo
#echo Checking doxygen support
#echo :::::::::::::::::::::::::::::::::::::::::::
#AC_PROG_DOXYGEN
echo
echo Checking doxygen support
echo :::::::::::::::::::::::::::::::::::::::::::
#if test -n "$DOXYGEN"
#then
#AC_CONFIG_FILES([docs/doxy.cfg])
#fi
# Check whether --enable-doxygen was given.
if test "${enable_doxygen+set}" = set; then :
enableval=$enable_doxygen;
fi
# Check whether --enable-dot was given.
if test "${enable_dot+set}" = set; then :
enableval=$enable_dot;
fi
# Check whether --enable-html-docs was given.
if test "${enable_html_docs+set}" = set; then :
enableval=$enable_html_docs;
else
enable_html_docs=yes
fi
# Check whether --enable-latex-docs was given.
if test "${enable_latex_docs+set}" = set; then :
enableval=$enable_latex_docs;
else
enable_latex_docs=no
fi
if test "x$enable_doxygen" = xno; then
enable_doc=no
else
# Extract the first word of "doxygen", so it can be a program name with args.
set dummy doxygen; ac_word=$2
{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5
$as_echo_n "checking for $ac_word... " >&6; }
if ${ac_cv_prog_DOXYGEN+:} false; then :
$as_echo_n "(cached) " >&6
else
if test -n "$DOXYGEN"; then
ac_cv_prog_DOXYGEN="$DOXYGEN" # Let the user override the test.
else
as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
for as_dir in $PATH
do
IFS=$as_save_IFS
test -z "$as_dir" && as_dir=.
for ac_exec_ext in '' $ac_executable_extensions; do
if as_fn_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
ac_cv_prog_DOXYGEN="doxygen"
$as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5
break 2
fi
done
done
IFS=$as_save_IFS
fi
fi
DOXYGEN=$ac_cv_prog_DOXYGEN
if test -n "$DOXYGEN"; then
{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $DOXYGEN" >&5
$as_echo "$DOXYGEN" >&6; }
else
{ $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5
$as_echo "no" >&6; }
fi
if test x$DOXYGEN = x; then
if test "x$enable_doxygen" = xyes; then
as_fn_error $? "could not find doxygen" "$LINENO" 5
fi
enable_doc=no
else
doxy_ver=`doxygen --version`
doxy_major=`expr "$doxy_ver" : '\([0-9]\)\..*'`
doxy_minor=`expr "$doxy_ver" : '[0-9]\.\([0-9]\).*'`
if test $doxy_major -eq "1" -a $doxy_minor -ge "3" ; then
enable_doc=yes
# Extract the first word of "dot", so it can be a program name with args.
set dummy dot; ac_word=$2
{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5
$as_echo_n "checking for $ac_word... " >&6; }
if ${ac_cv_prog_DOT+:} false; then :
$as_echo_n "(cached) " >&6
else
if test -n "$DOT"; then
ac_cv_prog_DOT="$DOT" # Let the user override the test.
else
as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
for as_dir in $PATH
do
IFS=$as_save_IFS
test -z "$as_dir" && as_dir=.
for ac_exec_ext in '' $ac_executable_extensions; do
if as_fn_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
ac_cv_prog_DOT="dot"
$as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5
break 2
fi
done
done
IFS=$as_save_IFS
fi
fi
DOT=$ac_cv_prog_DOT
if test -n "$DOT"; then
{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $DOT" >&5
$as_echo "$DOT" >&6; }
else
{ $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5
$as_echo "no" >&6; }
fi
else
{ $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: doxygen version $doxy_ver too old, doxygen will not be used." >&5
$as_echo "$as_me: WARNING: doxygen version $doxy_ver too old, doxygen will not be used." >&2;}
enable_doc=no
fi
fi
fi
if test x$enable_doc = xyes; then
DOXYGEN_DOC_TRUE=
DOXYGEN_DOC_FALSE='#'
else
DOXYGEN_DOC_TRUE='#'
DOXYGEN_DOC_FALSE=
fi
if test x$DOT = x; then
if test "x$enable_dot" = xyes; then
as_fn_error $? "could not find dot" "$LINENO" 5
fi
enable_dot=no
else
enable_dot=yes
fi
if test -n "$DOXYGEN"
then
ac_config_files="$ac_config_files docs/doxy.cfg"
fi
echo
echo Creating configuration files
@ -6756,10 +6925,24 @@ ac_config_files="$ac_config_files lib/Makefile"
ac_config_files="$ac_config_files tests/Makefile"
ac_config_files="$ac_config_files tests/IO/Makefile"
ac_config_files="$ac_config_files tests/core/Makefile"
ac_config_files="$ac_config_files tests/debug/Makefile"
ac_config_files="$ac_config_files tests/forces/Makefile"
ac_config_files="$ac_config_files tests/hmc/Makefile"
ac_config_files="$ac_config_files tests/solver/Makefile"
ac_config_files="$ac_config_files tests/qdpxx/Makefile"
ac_config_files="$ac_config_files benchmarks/Makefile"
ac_config_files="$ac_config_files prerequisites/Makefile"
cat >confcache <<\_ACEOF
# This file is a shell script that caches the results of configure
# tests run on this system so they can be shared between configure
@ -6925,6 +7108,10 @@ if test -z "${USE_LAPACK_LIB_TRUE}" && test -z "${USE_LAPACK_LIB_FALSE}"; then
as_fn_error $? "conditional \"USE_LAPACK_LIB\" was never defined.
Usually this means the macro was only invoked conditionally." "$LINENO" 5
fi
if test -z "${DOXYGEN_DOC_TRUE}" && test -z "${DOXYGEN_DOC_FALSE}"; then
as_fn_error $? "conditional \"DOXYGEN_DOC\" was never defined.
Usually this means the macro was only invoked conditionally." "$LINENO" 5
fi
: "${CONFIG_STATUS=./config.status}"
ac_write_fail=0
@ -7349,6 +7536,7 @@ cat >>$CONFIG_STATUS <<_ACEOF || ac_write_fail=1
# Files that config.status was made for.
config_files="$ac_config_files"
config_headers="$ac_config_headers"
config_links="$ac_config_links"
config_commands="$ac_config_commands"
_ACEOF
@ -7379,6 +7567,9 @@ $config_files
Configuration headers:
$config_headers
Configuration links:
$config_links
Configuration commands:
$config_commands
@ -7517,13 +7708,22 @@ cat >>$CONFIG_STATUS <<\_ACEOF || ac_write_fail=1
for ac_config_target in $ac_config_targets
do
case $ac_config_target in
"$ac_config_links_1") CONFIG_LINKS="$CONFIG_LINKS $ac_config_links_1" ;;
"lib/Config.h") CONFIG_HEADERS="$CONFIG_HEADERS lib/Config.h" ;;
"depfiles") CONFIG_COMMANDS="$CONFIG_COMMANDS depfiles" ;;
"docs/doxy.cfg") CONFIG_FILES="$CONFIG_FILES docs/doxy.cfg" ;;
"Makefile") CONFIG_FILES="$CONFIG_FILES Makefile" ;;
"lib/Makefile") CONFIG_FILES="$CONFIG_FILES lib/Makefile" ;;
"tests/Makefile") CONFIG_FILES="$CONFIG_FILES tests/Makefile" ;;
"tests/IO/Makefile") CONFIG_FILES="$CONFIG_FILES tests/IO/Makefile" ;;
"tests/core/Makefile") CONFIG_FILES="$CONFIG_FILES tests/core/Makefile" ;;
"tests/debug/Makefile") CONFIG_FILES="$CONFIG_FILES tests/debug/Makefile" ;;
"tests/forces/Makefile") CONFIG_FILES="$CONFIG_FILES tests/forces/Makefile" ;;
"tests/hmc/Makefile") CONFIG_FILES="$CONFIG_FILES tests/hmc/Makefile" ;;
"tests/solver/Makefile") CONFIG_FILES="$CONFIG_FILES tests/solver/Makefile" ;;
"tests/qdpxx/Makefile") CONFIG_FILES="$CONFIG_FILES tests/qdpxx/Makefile" ;;
"benchmarks/Makefile") CONFIG_FILES="$CONFIG_FILES benchmarks/Makefile" ;;
"prerequisites/Makefile") CONFIG_FILES="$CONFIG_FILES prerequisites/Makefile" ;;
*) as_fn_error $? "invalid argument: \`$ac_config_target'" "$LINENO" 5;;
esac
@ -7537,6 +7737,7 @@ done
if $ac_need_defaults; then
test "${CONFIG_FILES+set}" = set || CONFIG_FILES=$config_files
test "${CONFIG_HEADERS+set}" = set || CONFIG_HEADERS=$config_headers
test "${CONFIG_LINKS+set}" = set || CONFIG_LINKS=$config_links
test "${CONFIG_COMMANDS+set}" = set || CONFIG_COMMANDS=$config_commands
fi
@ -7834,7 +8035,7 @@ cat >>$CONFIG_STATUS <<\_ACEOF || ac_write_fail=1
fi # test -n "$CONFIG_HEADERS"
eval set X " :F $CONFIG_FILES :H $CONFIG_HEADERS :C $CONFIG_COMMANDS"
eval set X " :F $CONFIG_FILES :H $CONFIG_HEADERS :L $CONFIG_LINKS :C $CONFIG_COMMANDS"
shift
for ac_tag
do
@ -8111,7 +8312,38 @@ $as_echo X"$_am_arg" |
}
s/.*/./; q'`/stamp-h$_am_stamp_count
;;
:L)
#
# CONFIG_LINK
#
if test "$ac_source" = "$ac_file" && test "$srcdir" = '.'; then
:
else
# Prefer the file from the source tree if names are identical.
if test "$ac_source" = "$ac_file" || test ! -r "$ac_source"; then
ac_source=$srcdir/$ac_source
fi
{ $as_echo "$as_me:${as_lineno-$LINENO}: linking $ac_source to $ac_file" >&5
$as_echo "$as_me: linking $ac_source to $ac_file" >&6;}
if test ! -r "$ac_source"; then
as_fn_error $? "$ac_source: file not found" "$LINENO" 5
fi
rm -f "$ac_file"
# Try a relative symlink, then a hard link, then a copy.
case $ac_source in
[\\/$]* | ?:[\\/]* ) ac_rel_source=$ac_source ;;
*) ac_rel_source=$ac_top_build_prefix$ac_source ;;
esac
ln -s "$ac_rel_source" "$ac_file" 2>/dev/null ||
ln "$ac_source" "$ac_file" 2>/dev/null ||
cp -p "$ac_source" "$ac_file" ||
as_fn_error $? "cannot link or copy $ac_source to $ac_file" "$LINENO" 5
fi
;;
:C) { $as_echo "$as_me:${as_lineno-$LINENO}: executing $ac_file commands" >&5
$as_echo "$as_me: executing $ac_file commands" >&6;}
;;