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Commit Graph

42 Commits

Author SHA1 Message Date
Azusa Yamaguchi
3fa5e3109f Merge branch 'develop' of https://github.com/paboyle/Grid into develop 2017-06-19 14:01:44 +01:00
paboyle
3bfd1f13e6 I/O improvements 2017-06-11 23:14:10 +01:00
Azusa Yamaguchi
1d0ca65e28 Move Gfix into utils 2017-06-08 22:21:50 +01:00
paboyle
e099dcdae7 Merge branch 'develop' into feature/bgq-asm 2017-02-23 00:25:29 +00:00
paboyle
4e7ab3166f Refactoring header layout 2017-02-22 18:09:33 +00:00
afa095d33d HDF5: better complex number support 2017-01-20 12:10:41 -08:00
5803933aea First implementation of HDF5 serial IO writer, reader is still empty 2017-01-17 16:21:18 -08:00
paboyle
d15ab66aae FFT moves higher in include order 2016-08-31 00:25:22 +01:00
paboyle
17097a93ec FFTW test ran over 4 mpi processes. 2016-08-17 01:33:55 +01:00
paboyle
a0676beeb1 Open up dependency on Eigen and FFTW 2016-07-07 22:31:07 +01:00
paboyle
165bffc2e7 Avx512 changes for assembler kernels 2016-03-26 22:25:45 -06:00
Peter Boyle
7f927a541c Shmem related fixes for shmem compile 2016-02-11 07:37:39 -06:00
paboyle
aae8bf31a7 Global edit adding copyright and license info to every source file. 2016-01-02 14:51:32 +00:00
paboyle
0afcf1cf13 Moved all the HMC tests over to using a single HmcRunner class that manages checkpoint strategies and such like 2015-12-22 11:19:25 +00:00
paboyle
31ca609d12 HMC checkpointing .
Need a general HMC framework to work in restart.
2015-12-20 02:29:51 +00:00
Peter Boyle
dc814f30da Binary IO file for generic Grid array parallel I/O.
Number of IO MPI tasks can be varied by selecting which
dimensions use parallel IO and which dimensions use Serial send to boss
I/O.

Thus can neck down from, say 1024 nodes = 4x4x8x8 to {1,8,32,64,128,256,1024} nodes
doing the I/O.

Interpolates nicely between ALL nodes write their data, a single boss per time-plane
in processor space [old UKQCD fortran code did this], and a single node doing all I/O.

Not sure I have the transfer sizes big enough and am not overly convinced fstream
is guaranteed to not give buffer inconsistencies unless I set streambuf size to zero.

Practically it has worked on 8 tasks, 2x1x2x2 writing /cloning NERSC configurations
on my MacOS + OpenMPI and Clang environment.

It is VERY easy to switch to pwrite at a later date, and also easy to send x-strips around from
each node in order to gather bigger chunks at the syscall level.

That would push us up to the circa 8x 18*4*8 == 4KB size write chunk, and by taking, say, x/y non
parallel we get to 16MB contiguous chunks written in multi 4KB transactions
per IOnode in 64^3 lattices for configuration I/O.

I suspect this is fine for system performance.
2015-08-26 13:40:29 +01:00
Peter Boyle
35818fdf6c Text and Binary readers 2015-08-20 23:04:38 +01:00
Peter Boyle
ab81a25073 XMLReader implementation and a virtual Reader/Writer template framework.
Test_serialisation has an example of *code* *free* object serialisation
to both ostream and to XML using macro magic.

Implementing TextReader/TextWriter, YAML, JSON etc.. should be trivial
and we can use configure time options to select the default "Reader" typedef.

Present done with

"using XMLPolicy::Reader"

to pick up the default serialisation strategy.
2015-08-20 16:21:26 +01:00
Peter Boyle
4cc2ef84d3 Committing incomplete work for parameter file I/O.
MacroMagic.h is central. Guido and I plan to move
over to generating virtual (XML, JSON, YAML, text, binary) encoding
from macro based system.
2015-07-27 18:32:28 +09:00
Peter Boyle
d1afebf71e Sizable improvement in multigrid for unsquared.
6000 matmuls CG unprec
2000 matmuls CG prec (4000 eo muls)
1050 matmuls PGCR on 16^3 x 32 x 8 m=.01

Substantial effort on timing and logging infrastructure
2015-07-24 01:31:13 +09:00
Peter Boyle
1e5b015ee3 Some unary ops and coarse grid support 2015-06-09 10:26:19 +01:00
Peter Boyle
1d0df449e8 Reorganise of file naming 2015-06-03 12:47:05 +01:00
Peter Boyle
5644ab1e19 Large scale change to support 5d fermion formulations.
Have 5d replicated wilson with 4d gauge working and matrix regressing
to Ls copies of wilson.
2015-05-31 15:09:02 +01:00
Peter Boyle
840754dd42 Hand unrolled version of dslash in a separate class.
Useful to compare; raises Intel compiler from 9GFlop/s to 17.5 Gflops.
                   on ivybridge core. Raises Clang form 14.5 to 17.5
2015-05-26 19:54:03 +01:00
azusayamaguchi
91f29d4a68 Add messages to get the number of threads for openmp 2015-05-19 14:54:42 +01:00
Peter Boyle
11cb3e9a01 Getting closer to having a wilson solver... introducing a first and untested
cut at Conjugate gradient. Also copied in Remez, Zolotarev, Chebyshev from
Mike Clark, Tony Kennedy and my BFM package respectively since we know we will
need these. I wanted the structure of

algorithms/approx
algorithms/iterative

etc.. to start taking shape.
2015-05-18 07:47:05 +01:00
Peter Boyle
c0977dcfaa strong inline required to force icpc 2015-05-15 11:31:41 +01:00
Peter Boyle
48f425d31c I have made the Cshift work successfully with open mp threading in
every routine. Collapse(2) is now working under clang-omp++.
2015-05-13 00:31:00 +01:00
Peter Boyle
6cec662ac5 Enhanced SIMD interfacing 2015-05-12 20:41:44 +01:00
Peter Boyle
6103c29ee3 Threading support rework.
Placed parallel pragmas as macros; implemented deterministic thread reduction in style of
BFM.
2015-05-12 07:51:41 +01:00
Peter Boyle
22d384b07d Adding a better controlled threading class, preparing to
force in deterministic reduction.
2015-05-11 18:59:03 +01:00
Peter Boyle
f5dcca7b1b Got command line args working 2015-05-11 14:36:48 +01:00
paboyle
379943abf5 Command line args and a general clean up 2015-05-11 12:43:10 +01:00
Peter Boyle
193860dbc8 Comms and memory benchmarks added 2015-05-03 09:44:47 +01:00
Peter Boyle
94f728bee4 Big updates with progress towards wilson matrix 2015-04-26 15:51:09 +01:00
Peter Boyle
3083d2e908 Rename Grid_QCD 2015-04-23 20:42:09 +01:00
Peter Boyle
b32c14b433 Got the NERSC IO working and fixed a bug in cshift. 2015-04-22 22:46:48 +01:00
Peter Boyle
8ddfa7e6b0 Reorganisation 2015-04-18 21:23:32 +01:00
Peter Boyle
6eae2c1083 Shrinking and organising the files 2015-04-18 20:44:19 +01:00
Peter Boyle
cffad66894 Reorganise to keep files smaller 2015-04-18 18:36:48 +01:00
Peter Boyle
2ee9322a8f Clean up caps. 2015-04-18 17:09:48 +01:00
Peter Boyle
c656164015 Reorg of build structure 2015-04-18 14:55:00 +01:00