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Commit Graph

34 Commits

Author SHA1 Message Date
paboyle
501fa1614a Communicator updates for split grid 2017-10-30 00:16:12 +00:00
paboyle
1ef424b139 Split grid Y2K bug fix attempt 2017-10-27 14:20:35 +01:00
Guido Cossu
8a3aae98f6 Solving minor bug in compilation 2017-10-25 10:34:49 +01:00
Guido Cossu
8309f2364b Solving again the MPI comm bug with FFTs 2017-10-25 10:24:14 +01:00
paboyle
07009c569a Comms splitting improvements 2017-10-09 23:16:51 +01:00
paboyle
d54807b8c0 MPIT works with split grid now 2017-10-02 23:14:56 +01:00
paboyle
57002924bc NERSC shakeout of this 2017-07-02 14:58:30 -07:00
paboyle
e504260f3d Able to run a test job splitting into multiple MPI subdomains. 2017-06-22 18:53:11 +01:00
paboyle
5e4bea8f20 Benchmark DWF works 2017-06-22 08:38:54 +01:00
paboyle
6ebf9f15b7 Splitting communicators first cut 2017-06-22 08:14:34 +01:00
paboyle
3bfd1f13e6 I/O improvements 2017-06-11 23:14:10 +01:00
Christopher Kelly
06a132e3f9 Fixes to SHMEM comms 2017-02-28 13:31:54 -08:00
paboyle
4e7ab3166f Refactoring header layout 2017-02-22 18:09:33 +00:00
paboyle
3ae92fa2e6 Global changes to parallel_for structure.
Move the comms flags to more sensible names
2017-02-21 05:24:27 -05:00
paboyle
bd600702cf Vectorise the XYZT face gathering better.
Hard coded for simd_layout <= 2 in any given spread out direction; full generality is inconsistent
with efficiency.
2017-02-15 11:11:04 +00:00
paboyle
123c673db7 Policy to control async or sync SendRecv 2017-02-07 01:24:54 -05:00
paboyle
791cb050c8 Comms improvements 2016-11-01 11:35:43 +00:00
azusayamaguchi
b6a65059a2 Update to use shared memory to contain the stencil comms buffers
Tested on 2.1.1.1 1.2.1.1 4.1.1.1 1.4.1.1 2.2.1.1 subnode decompositions
2016-10-24 17:30:43 +01:00
azusayamaguchi
c190221fd3 Internal SHM comms in non-simd directions working
Need to fix simd directions
2016-10-22 18:14:27 +01:00
paboyle
a762b1fb71 MPI3 working with a bounce through shared memory on my laptop.
Longer term plan: make the "u_comm_buf" in Stencil point to the shared region and avoid the
send between ranks on same node.
2016-10-21 09:03:26 +01:00
paboyle
32bc7a6ab8 MPI back out of change that hangs
AVX2 for clang, gcc needs the -mfma flag.
2016-08-05 10:36:00 +01:00
paboyle
62601bb649 Bug fix 2016-07-08 20:46:29 +01:00
paboyle
ef97e32152 Adding persistent communicators 2016-07-08 17:16:08 +01:00
Richard Rollins
86187d7cca Removed write to stdout in constructor for MPI CartesianCommunicator 2016-06-14 15:34:20 +01:00
paboyle
a359f7a9f5 Merge branch 'master' of https://github.com/paboyle/Grid 2016-03-11 16:07:07 -08:00
paboyle
b606deb3f0 Uint64 gsum 2016-03-11 16:06:54 -08:00
paboyle
090e7aa930 Merge remote-tracking branch 'origin/chulwoo-dec12-2015'
Merge Chulwoo's Lanczos related improvements.
Merge Nd!=4 fixes for pure gauge HMC from Evan.
2016-03-08 09:55:14 +00:00
Peter Boyle
6aeaf6f568 Parallel IO worked on. I'm puzzled because I already thought I shook this out on MacOS + OpenMPI and then
turned up problems on the BlueWaters Cray.

Gets 75MB/s from home filesystem on parallel configuration read. Need to make the RNG IO parallel,
and also to look at aggregating bigger writes for the parallel write.
Not sure what the home filesystem is.
2016-02-21 08:03:21 -06:00
Peter Boyle
41c2b09184 Shmem comms [NO MPI] target added. The dwf test runs and passes.
Not really shaken out to my satisfaction though as I want more tests done, so don't declare as working.
But committing my current while I try a few experimentals.
2016-02-14 14:24:38 -06:00
Jung
5c57d4f403 Merge branch 'master' of https://github.com/paboyle/Grid into scidac1_2
Conflicts:
	lib/qcd/action/fermion/WilsonKernels.h
2016-01-11 11:36:45 -05:00
Jung
5924e5a562 Merge branch 'master' of https://github.com/paboyle/Grid into scidac1_2
Conflicts:
	configure
	lib/qcd/action/Actions.h
	lib/qcd/action/fermion/WilsonKernels.h
2016-01-06 03:44:57 -05:00
paboyle
aae8bf31a7 Global edit adding copyright and license info to every source file. 2016-01-02 14:51:32 +00:00
Peter Boyle
dc814f30da Binary IO file for generic Grid array parallel I/O.
Number of IO MPI tasks can be varied by selecting which
dimensions use parallel IO and which dimensions use Serial send to boss
I/O.

Thus can neck down from, say 1024 nodes = 4x4x8x8 to {1,8,32,64,128,256,1024} nodes
doing the I/O.

Interpolates nicely between ALL nodes write their data, a single boss per time-plane
in processor space [old UKQCD fortran code did this], and a single node doing all I/O.

Not sure I have the transfer sizes big enough and am not overly convinced fstream
is guaranteed to not give buffer inconsistencies unless I set streambuf size to zero.

Practically it has worked on 8 tasks, 2x1x2x2 writing /cloning NERSC configurations
on my MacOS + OpenMPI and Clang environment.

It is VERY easy to switch to pwrite at a later date, and also easy to send x-strips around from
each node in order to gather bigger chunks at the syscall level.

That would push us up to the circa 8x 18*4*8 == 4KB size write chunk, and by taking, say, x/y non
parallel we get to 16MB contiguous chunks written in multi 4KB transactions
per IOnode in 64^3 lattices for configuration I/O.

I suspect this is fine for system performance.
2015-08-26 13:40:29 +01:00
Peter Boyle
1d0df449e8 Reorganise of file naming 2015-06-03 12:47:05 +01:00