19526d09c2
Merge commit '6aeaf6f568a391e34b913f08be6a11beb28d8842'
2016-02-22 15:23:26 +00:00
Peter Boyle
6aeaf6f568
Parallel IO worked on. I'm puzzled because I already thought I shook this out on MacOS + OpenMPI and then
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turned up problems on the BlueWaters Cray.
Gets 75MB/s from home filesystem on parallel configuration read. Need to make the RNG IO parallel,
and also to look at aggregating bigger writes for the parallel write.
Not sure what the home filesystem is.
2016-02-21 08:03:21 -06:00
Peter Boyle
40f2db9bc0
Disable metropolis step until 10 traj covered. Should move to exposing these
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in XML input and start having "applications" directory.
2016-02-21 08:01:44 -06:00
Peter Boyle
2cfa20cc4e
Improving the logging, got fed up with color so optionally disable.
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Backtrace macro used everwhere
2016-02-21 07:58:53 -06:00
Peter Boyle
a5f683d124
Machine generated
2016-02-21 07:57:42 -06:00
Peter Boyle
02a57ffa6f
machine generated. Should remove from git .. but annoys downloaders
2016-02-21 07:57:02 -06:00
paboyle
3425751cb8
Missing return value
2016-02-19 01:06:03 +00:00
paboyle
db5e8050a8
Attempts at some optimisation
2016-02-18 22:33:58 +00:00
paboyle
a3fbabf404
Bug fix
2016-02-18 18:08:24 +00:00
Peter Boyle
22422a84d9
Small problem in compressor fix
2016-02-17 19:03:09 -06:00
Peter Boyle
b6f6da923e
Change to the compressor & stencil interface a little.
2016-02-17 18:27:11 -06:00
Peter Boyle
c9fadf97a5
Simplify the compressor interface again.
2016-02-17 18:16:45 -06:00
Peter Boyle
c650bb3f3d
Very small merge speed up.
2016-02-16 18:41:53 -06:00
Peter Boyle
81395e85d1
Regressing to not overlap comms and compute becasue bluewaters, edison, and cori are so rubbish at it.
2016-02-16 13:56:44 -06:00
Peter Boyle
340a29b735
More careful sequencing of comms
2016-02-15 16:04:59 -06:00
Peter Boyle
f7be108e35
100 iters faster
2016-02-15 16:03:04 -06:00
Peter Boyle
a0fc47c6f9
Cheaper implementation
2016-02-15 16:02:36 -06:00
Peter Boyle
42a9ac71d2
BUg fix, wait till complete.
2016-02-14 16:21:21 -06:00
Peter Boyle
41c2b09184
Shmem comms [NO MPI] target added. The dwf test runs and passes.
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Not really shaken out to my satisfaction though as I want more tests done, so don't declare as working.
But committing my current while I try a few experimentals.
2016-02-14 14:24:38 -06:00
paboyle
294dbf1bf0
Compile on OpenMPI shmem
2016-02-11 23:45:51 +00:00
Peter Boyle
9548c8b91f
Had to break this out for universal access through the code base.
2016-02-11 07:40:09 -06:00
Peter Boyle
7f927a541c
Shmem related fixes for shmem compile
2016-02-11 07:37:39 -06:00
paboyle
e2f73e3ead
Updates for shmem
2016-02-10 16:50:32 -08:00
neo
6371676a75
Correcting some compilation errors for clang-sse
2016-02-10 11:37:03 +09:00
paboyle
fc6ad65751
Pushed the overlap comms tweaks
2016-01-11 06:34:22 -08:00
paboyle
dafc74020c
Overlap comms compute improvements in hand op kernels, and better timing from Edison and Cori
2016-01-10 16:54:27 -08:00
paboyle
d19321dfde
Overlap comms compute changes
2016-01-10 19:20:16 +00:00
paboyle
c99d748da6
Timing reports in benchmarks now reflect the asynch comms thread statistics
2016-01-04 14:42:16 +00:00
paboyle
02452afd36
Optional overlap of comms with compute
2016-01-04 14:18:40 +00:00
paboyle
331768dcff
Added overlap comms compute mode
2016-01-03 01:38:11 +00:00
paboyle
4aac345bea
Updated logging to colour code according to message type
2016-01-02 17:21:14 +00:00
paboyle
15c0022042
GPLv2 clarified, and copyright message and banner in Init function.
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Color is just showing off....
2016-01-02 15:22:30 +00:00
paboyle
aae8bf31a7
Global edit adding copyright and license info to every source file.
2016-01-02 14:51:32 +00:00
paboyle
1e68b1c1bd
Create a benign default for gparity twists
2016-01-02 14:06:53 +00:00
paboyle
491a708225
Twist params set up correctly in gparity even odd 2f DWF + Wilson HMC test
2016-01-02 14:02:41 +00:00
paboyle
5a80930dd2
Charge conjugation boundary conditions for gauge fields implemented as a policy
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class, changing the nature of covariant Cshifts used in
plaquettes, rectangles and staples.
As a result same code is used for the plaq and rect action independent of the BC type.
Should probably isolate the BC in a separate class that Gimpl takes as a template param.
Do the same with smearing policies.
This would then allow composition of BC with smearing etc....
2016-01-02 13:37:25 +00:00
paboyle
145a295231
Bug fix for stencil with large shifts (3+), would be important to naik term for example but did not
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impact Wilson based nearest neighbour stencils.
2015-12-30 19:29:48 +00:00
paboyle
841a37f941
Fix to WilsonCompressor that fixes a bug in comms phase due to the sign change on gamma
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matrix in hopping term.
Add logging of time spent in CG.
2015-12-29 23:49:41 +00:00
Azusa Yamaguchi
e6cad3821c
Logging improvement
2015-12-29 19:51:18 +00:00
Azusa Yamaguchi
98de1cbb6a
Optimised version of rectangle term staples.
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~3.4x faster than the naive.
2015-12-29 19:22:59 +00:00
Azusa Yamaguchi
f7d61b8b81
Plaq plus rectangle and Iwasaki, Symanzik DBW2.
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http://arxiv.org/pdf/hep-lat/0610075.pdf plaq and rect regress plausibly over 100 trajectories
and under HMC with average plaq and rectangle coming out ok.
2015-12-28 16:39:26 +00:00
Azusa Yamaguchi
78c4e862ef
Plaq, Rectangle, Iwasaki, Symanzik and DBW2 workign and HMC regresses to http://arxiv.org/pdf/hep-lat/0610075.pdf
2015-12-28 16:38:31 +00:00
1e0be161e5
MacroMagic: inline functions to avoid double symbol issues
2015-12-23 14:20:05 +00:00
paboyle
0afcf1cf13
Moved all the HMC tests over to using a single HmcRunner class that manages checkpoint strategies and such like
2015-12-22 11:19:25 +00:00
paboyle
08edbb5cbe
HMC bit repro across checkpoints. Fixed parallel RNG issue with threading.
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Conclusion: c++11 distributions not thread safe and must us distinct dist as well as distinct engine
per site. Makes sense when you think of box muller. Also added a reset of dist on fill to ensure
repro across checkpoints.
2015-12-22 08:54:40 +00:00
paboyle
0abfbcc8eb
Naming of files improvement.
2015-12-21 15:37:26 +00:00
paboyle
1b94253ba4
Logging improvement
2015-12-21 15:36:28 +00:00
paboyle
36e6f9ac7b
Bug fix. Guess not initialised in refresh step; didn't hit before due to luck in not having a vector
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created with NAN data.
2015-12-21 15:34:35 +00:00
paboyle
2f41691c11
Bug fix. Guess was not zeroed prior to CG call. Was earlier accidentally benign just due to luck.
2015-12-21 15:33:36 +00:00
paboyle
09bfe52840
Remove extraneous variable
2015-12-21 15:30:28 +00:00
