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154 Commits

Author SHA1 Message Date
Peter Boyle
bf973d0d56 SHM complete 2017-09-05 14:30:29 +01:00
Peter Boyle
837bf8a5be Updating to control the SHM allocation scheme under configure time options 2017-09-05 12:51:02 +01:00
Peter Boyle
c05b2199f6 Improvements to huge memory 2017-09-04 10:41:21 -04:00
paboyle
7359df3501 Full reporting for benchmark; save robustness factor 2017-08-31 10:42:35 +01:00
Peter Boyle
c3b1263e75 Benchmark prep 2017-08-25 09:25:54 +01:00
paboyle
b49bec0cec MAP_HUGETLB portability fix 2017-08-20 03:08:54 +01:00
paboyle
1cdf999668 Moving multicommunicator into mpi3 also for threading 2017-08-20 02:39:10 +01:00
paboyle
11062fb686 Comms none fail fix 2017-08-20 01:37:07 +01:00
paboyle
a446d95c33 Trying to pass TeamCity and Travis 2017-08-20 01:10:50 +01:00
Peter Boyle
0b0cf62193 Fix mpi 3 interface change 2017-08-19 13:18:50 -04:00
Peter Boyle
7d88198387 Merge branch 'develop' into feature/multi-communicator 2017-08-19 13:03:35 -04:00
Peter Boyle
2f619482b8 Enable blocking stencil send 2017-08-19 12:53:59 -04:00
Peter Boyle
d6472eda8d Use mmap 2017-08-19 12:53:18 -04:00
Peter Boyle
14d53e1c9e Threaded MPI calls patches 2017-07-29 13:08:10 -04:00
azusayamaguchi
dc6f078246 fixed the header file for mpi3 2017-07-11 14:15:08 +01:00
Peter Boyle
40e119c61c NUMA improvements worth preserving from AMD EPYC tests 2017-07-08 22:27:11 -04:00
paboyle
57002924bc NERSC shakeout of this 2017-07-02 14:58:30 -07:00
paboyle
54e94360ad Experimental: Multiple communicators to see if we can avoid thread locks in --enable-comms=mpit 2017-06-24 23:10:24 +01:00
paboyle
869b99ec1e Threaded calls to multiple communicators 2017-06-24 10:55:54 +01:00
paboyle
1feddf4ba6 const fixes 2017-06-22 19:32:41 +01:00
paboyle
e504260f3d Able to run a test job splitting into multiple MPI subdomains. 2017-06-22 18:53:11 +01:00
paboyle
5e4bea8f20 Benchmark DWF works 2017-06-22 08:38:54 +01:00
paboyle
6ebf9f15b7 Splitting communicators first cut 2017-06-22 08:14:34 +01:00
paboyle
3bfd1f13e6 I/O improvements 2017-06-11 23:14:10 +01:00
paboyle
e30fa9f4b8 RankCount; need to clean up ambigious ProcessCount 2017-05-30 23:39:16 +01:00
Antonin Portelli
8ef4300412 spurious .dirstamp files removed 2017-04-10 17:00:22 +01:00
paboyle
5592f7b8c1 Creation mode better implementation 2017-04-05 02:35:34 +09:00
paboyle
35da4ece0b UID fix 2017-04-05 02:18:15 +09:00
paboyle
417ec56cca Release candidate 2017-03-29 05:45:33 -04:00
paboyle
35695ba57a Bug fix in MPI3 2017-03-29 04:43:55 -04:00
paboyle
4b17e8eba8 Merge branch 'develop' into feature/bgq-asm 
Conflicts:
	lib/qcd/action/fermion/Fermion.h
	lib/qcd/action/fermion/WilsonFermion.cc
	lib/util/Init.cc
	tests/Test_cayley_even_odd_vec.cc
 2017-03-28 04:49:30 -04:00
paboyle
18bde08d1b Merge branch 'feature/staggering' into develop 2017-03-28 15:25:55 +09:00
paboyle
fc93f0b2ec Save some code for static huge tlb's. It is ifdef'ed out but an interesting root only experiment. 
No gain from it.
 2017-03-21 22:30:29 -04:00
Christopher Kelly
06a132e3f9 Fixes to SHMEM comms 2017-02-28 13:31:54 -08:00
paboyle
4e7ab3166f Refactoring header layout 2017-02-22 18:09:33 +00:00
paboyle
3ae92fa2e6 Global changes to parallel_for structure. 
Move the comms flags to more sensible names
 2017-02-21 05:24:27 -05:00
paboyle
37720c4db7 Count bytes off node only 2017-02-20 17:47:40 -05:00
paboyle
5c0adf7bf2 Make clang happy with parenthesis 2017-02-16 23:51:33 +00:00
paboyle
bd600702cf Vectorise the XYZT face gathering better. 
Hard coded for simd_layout <= 2 in any given spread out direction; full generality is inconsistent
with efficiency.
 2017-02-15 11:11:04 +00:00
paboyle
a48ee6f0f2 Don't use MPI3_leader any more. No real gain and complex 2017-02-07 01:31:24 -05:00
paboyle
73547cca66 MPI3 working i think 2017-02-07 01:30:02 -05:00
paboyle
123c673db7 Policy to control async or sync SendRecv 2017-02-07 01:24:54 -05:00
paboyle
61f82216e2 Communicator Policy, NodeCount distinct from Rank count 2017-02-07 01:22:53 -05:00
Antonin Portelli
fad743fbb1 Build system sanity check: corrected several headers not in the <Grid/*> format 2017-01-26 17:00:41 -08:00
Azusa Yamaguchi
668ca57702 Merge branch 'develop' of https://github.com/paboyle/Grid into feature/staggering 2016-11-22 13:49:11 +00:00
azusayamaguchi
f85b35314d Fix a routine for single node processor coor from rank 2016-11-08 11:49:13 +00:00
azusayamaguchi
6e548a8ad5 Linux compile needed 2016-11-04 11:34:16 +00:00
Azusa Yamaguchi
ee686a7d85 Compiles now 2016-11-03 16:58:23 +00:00
paboyle
f41a230b32 Decrease mpi3l verbose 2016-11-02 19:54:03 +00:00
paboyle
757a928f9a Improvement to use own SHM_OPEN call to avoid openmpi bug. 2016-11-02 12:37:46 +00:00
paboyle
32375aca65 Semaphore sleep/wake up on remote processes. 2016-11-02 09:27:20 +00:00
paboyle
bb94ddd0eb Tidy up of mpi3; also some cleaning of the dslash controls. 2016-11-02 08:07:09 +00:00
paboyle
791cb050c8 Comms improvements 2016-11-01 11:35:43 +00:00
paboyle
09f66100d3 MPI 3 compile on non-linux 2016-10-25 06:01:12 +01:00
azusayamaguchi
d7d92af09d Travis fail fix attempt 2016-10-25 01:45:53 +01:00
azusayamaguchi
d97a27f483 Verbose 2016-10-25 01:05:31 +01:00
azusayamaguchi
7c3363b91e Compiles all comms targets 2016-10-25 00:04:17 +01:00
azusayamaguchi
b94478fa51 mpi, mpi3, shmem all compile. 
mpi, mpi3 pass single node multi-rank
 2016-10-24 23:45:31 +01:00
azusayamaguchi
b6a65059a2 Update to use shared memory to contain the stencil comms buffers 
Tested on 2.1.1.1 1.2.1.1 4.1.1.1 1.4.1.1 2.2.1.1 subnode decompositions
 2016-10-24 17:30:43 +01:00
azusayamaguchi
c190221fd3 Internal SHM comms in non-simd directions working 
Need to fix simd directions
 2016-10-22 18:14:27 +01:00
azusayamaguchi
910b8dd6a1 use simd type 2016-10-21 22:35:29 +01:00
azusayamaguchi
09fd5c43a7 Reasonably fast version 2016-10-21 15:17:39 +01:00
azusayamaguchi
fad96cf250 StencilBufs 2016-10-21 13:36:00 +01:00
azusayamaguchi
f331809c27 Use variable type for loop 2016-10-21 13:35:37 +01:00
paboyle
306160ad9a bcopy threaded 2016-10-21 12:07:28 +01:00
paboyle
a762b1fb71 MPI3 working with a bounce through shared memory on my laptop. 
Longer term plan: make the "u_comm_buf" in Stencil point to the shared region and avoid the
send between ranks on same node.
 2016-10-21 09:03:26 +01:00
paboyle
b58adc6a4b commVector 2016-10-20 17:00:15 +01:00
paboyle
5fe2b85cbd MPI3 and shared memory support 2016-10-20 16:58:01 +01:00
paboyle
32bc7a6ab8 MPI back out of change that hangs 
AVX2 for clang, gcc needs the -mfma flag.
 2016-08-05 10:36:00 +01:00
paboyle
62601bb649 Bug fix 2016-07-08 20:46:29 +01:00
paboyle
ef97e32152 Adding persistent communicators 2016-07-08 17:16:08 +01:00
paboyle
680645f849 Merge branch 'release/v0.5.0' 2016-06-30 15:15:03 -07:00
Guido Cossu
5e02392f9c Fixed compilation error for benchmark_dwf 
Some parts were assuming floating point precision
 2016-06-20 12:30:51 +01:00
Richard Rollins
86187d7cca Removed write to stdout in constructor for MPI CartesianCommunicator 2016-06-14 15:34:20 +01:00
paboyle
d6b64f47d9 Uint64 sum for IO rates 2016-03-16 02:27:22 -07:00
paboyle
a359f7a9f5 Merge branch 'master' of https://github.com/paboyle/Grid 2016-03-11 16:07:07 -08:00
paboyle
b606deb3f0 Uint64 gsum 2016-03-11 16:06:54 -08:00
paboyle
090e7aa930 Merge remote-tracking branch 'origin/chulwoo-dec12-2015' 
Merge Chulwoo's Lanczos related improvements.
Merge Nd!=4 fixes for pure gauge HMC from Evan.
 2016-03-08 09:55:14 +00:00
paboyle
e55c35734b Fix a nocompile 2016-03-03 20:33:28 +00:00
Peter Boyle
6aeaf6f568 Parallel IO worked on. I'm puzzled because I already thought I shook this out on MacOS + OpenMPI and then 
turned up problems on the BlueWaters Cray.

Gets 75MB/s from home filesystem on parallel configuration read. Need to make the RNG IO parallel,
and also to look at aggregating bigger writes for the parallel write.
Not sure what the home filesystem is.
 2016-02-21 08:03:21 -06:00
paboyle
a3fbabf404 Bug fix 2016-02-18 18:08:24 +00:00
Peter Boyle
41c2b09184 Shmem comms [NO MPI] target added. The dwf test runs and passes. 
Not really shaken out to my satisfaction though as I want more tests done, so don't declare as working.
But committing my current while I try a few experimentals.
 2016-02-14 14:24:38 -06:00
paboyle
294dbf1bf0 Compile on OpenMPI shmem 2016-02-11 23:45:51 +00:00
Peter Boyle
7f927a541c Shmem related fixes for shmem compile 2016-02-11 07:37:39 -06:00
paboyle
e2f73e3ead Updates for shmem 2016-02-10 16:50:32 -08:00
Jung
5c57d4f403 Merge branch 'master' of https://github.com/paboyle/Grid into scidac1_2 
Conflicts:
	lib/qcd/action/fermion/WilsonKernels.h
 2016-01-11 11:36:45 -05:00
Jung
5924e5a562 Merge branch 'master' of https://github.com/paboyle/Grid into scidac1_2 
Conflicts:
	configure
	lib/qcd/action/Actions.h
	lib/qcd/action/fermion/WilsonKernels.h
 2016-01-06 03:44:57 -05:00
paboyle
aae8bf31a7 Global edit adding copyright and license info to every source file. 2016-01-02 14:51:32 +00:00
Peter Boyle
dc814f30da Binary IO file for generic Grid array parallel I/O. 
Number of IO MPI tasks can be varied by selecting which
dimensions use parallel IO and which dimensions use Serial send to boss
I/O.

Thus can neck down from, say 1024 nodes = 4x4x8x8 to {1,8,32,64,128,256,1024} nodes
doing the I/O.

Interpolates nicely between ALL nodes write their data, a single boss per time-plane
in processor space [old UKQCD fortran code did this], and a single node doing all I/O.

Not sure I have the transfer sizes big enough and am not overly convinced fstream
is guaranteed to not give buffer inconsistencies unless I set streambuf size to zero.

Practically it has worked on 8 tasks, 2x1x2x2 writing /cloning NERSC configurations
on my MacOS + OpenMPI and Clang environment.

It is VERY easy to switch to pwrite at a later date, and also easy to send x-strips around from
each node in order to gather bigger chunks at the syscall level.

That would push us up to the circa 8x 18*4*8 == 4KB size write chunk, and by taking, say, x/y non
parallel we get to 16MB contiguous chunks written in multi 4KB transactions
per IOnode in 64^3 lattices for configuration I/O.

I suspect this is fine for system performance.
 2015-08-26 13:40:29 +01:00
neo
48bf4878c1 Experimental support for ARM 2015-06-09 15:46:21 +09:00
Azusa Yamaguchi
58a4f32298 merge to the head 2015-06-05 10:15:31 +01:00
Peter Boyle
1d0df449e8 Reorganise of file naming 2015-06-03 12:47:05 +01:00
Peter Boyle
3845f267cb Domain wall fermions now invert ; have the basis set up for 
Tanh/Zolo * (Cayley/PartFrac/ContFrac) * (Mobius/Shamir/Wilson)
Approx        Representation               Kernel.

All are done with space-time taking part in checkerboarding, Ls uncheckerboarded

Have only so far tested the Domain Wall limit of mobius, and at that only checked
that it
i)  Inverts
ii) 5dim DW == Ls copies of 4dim D2
iii) MeeInv Mee == 1
iv) Meo+Mee+Moe+Moo == M unprec.
v) MpcDagMpc is hermitan
vi) Mdag is the adjoint of M between stochastic vectors.

That said, the RB schur solve, RB MpcDagMpc solve, Unprec solve
all converge and the true residual becomes small; so pretty good tests.
 2015-06-02 16:57:12 +01:00
neo
74e91cd925 Partial implementation of the vector types SIMD 
Implementing SSE4 now
A systematic series of tests must be written.
 2015-05-19 17:21:17 +09:00
neo
baa382f055 Added check of mpfr and gmp at configure time 
It generates automatically the linker flags or complains if not found.
 2015-05-19 13:54:55 +09:00
neo
b4cd37276b Corrected some compilation errors (zolotarev.h) and SSE4 vsplat and conj to make cshift test pass. 2015-05-18 16:48:14 +09:00
Peter Boyle
b1d2c60d07 Moving some things around for pretty 2015-05-11 19:09:49 +01:00
paboyle
379943abf5 Command line args and a general clean up 2015-05-11 12:43:10 +01:00
Peter Boyle
29be76f958 Fixing breakage in the Comms non compile 2015-05-10 15:23:09 +01:00
Peter Boyle
193860dbc8 Comms and memory benchmarks added 2015-05-03 09:44:47 +01:00