(The above required exposing the gauge implementation to the HMC class through the Integrator class)
Made the random shift optional (default on) through a parameter in HMCparameters
Modified ConjugateBC::CshiftLink such that it supports any shift in -L < shift < L rather than just +-1
Added a tester for the BC-respecting Cshift
Fixed a missing system header include in SSE4 intrinsics wrapper
Fixed sumD_cpu for single-prec types performing an incorrect conversion to a single-prec data type at the end, that fails to compile on some systems
To the gauge implementations, added CshiftLink functions calling into the appropriate operation for the BC in a given direction.
GaugeTransform, FourierAcceleratedGaugeFixer and WilsonLoops::FieldStrength no longer implicitly assume periodic boundary conditions; instead the shifted link is obtained using CshiftLink and is aware of the gauge implementation.
Added an assert-check to ensure that the gauge fixing converges within the specified number of steps.
Added functionality to compute the timeslice averaged plaquette
Added functionality to compute the 5LI topological charge and timeslice topological charge
Added a check of the properties of the charge conjugation matrix C=-gamma_2 gamma_4 to Test_gamma
Fixed const correctness for Replicate
Modified Test_fft_gfix to support either conjugate or periodic BCs, optionally disabling Fourier-accelerated gauge fixing, and tuning of alpha using cmdline options
