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2341 Commits

Author SHA1 Message Date
paboyle
ab1068044e C++ emacs happy 2018-01-13 00:01:58 +00:00
paboyle
dda151250f Emacs format 2018-01-12 23:59:58 +00:00
paboyle
18daf85069 Emacs format 2018-01-12 23:58:23 +00:00
paboyle
81cc28f6ca Format 2018-01-12 23:57:22 +00:00
paboyle
c01a1e02fe Namespace, format 2018-01-12 23:55:38 +00:00
paboyle
7e70f4ed9c Format, NAMESPACE 2018-01-12 23:55:03 +00:00
paboyle
1056e36f11 Format, NAMESPACE 2018-01-12 23:49:46 +00:00
paboyle
0b8a88978b Format, NAMESPACE 2018-01-12 23:47:24 +00:00
paboyle
59b31b6bb8 Format, NAMESPACE 2018-01-12 23:43:44 +00:00
paboyle
69496482fc Format, NAMESPACE 2018-01-12 23:42:22 +00:00
paboyle
4be31ad1f6 C++ indentation 2018-01-12 23:39:49 +00:00
paboyle
176a021ce9 Formatting, NAMESPACE§ 2018-01-12 23:38:15 +00:00
paboyle
b673174b71 FOrmat, NAMESPACE 2018-01-12 23:29:22 +00:00
paboyle
e6f7a5a818 Namespace 2018-01-12 23:28:01 +00:00
paboyle
68b69a2ac0 Namespace management 2018-01-12 23:26:14 +00:00
paboyle
bd15c38ae8 Formatting emacs compliant 2018-01-12 23:25:02 +00:00
paboyle
b815f5f764 Formatting 2018-01-12 23:23:21 +00:00
paboyle
4da437431e Reformat 2018-01-12 23:22:46 +00:00
paboyle
3c7bf211a9 Reformat 2018-01-12 23:22:18 +00:00
paboyle
347d5404dd format 2018-01-12 23:21:25 +00:00
paboyle
5e2cd0d07c Format 2018-01-12 23:18:22 +00:00
paboyle
62fcee72c5 Format, NAMESPACE 2018-01-12 23:16:37 +00:00
paboyle
0a6168eef0 Format emacs style 2018-01-12 23:11:22 +00:00
paboyle
63865e4232 format 2018-01-12 23:10:48 +00:00
paboyle
c64deedf74 Format 2018-01-12 23:09:35 +00:00
paboyle
3281559ec3 Format 2018-01-12 23:09:01 +00:00
paboyle
6a2eca2ec2 NAMESAPCE 2018-01-12 23:00:03 +00:00
paboyle
d8ff895e74 NAMESPACE and format 2018-01-12 18:27:22 +00:00
paboyle
00c49d4c17 Format 2018-01-12 18:25:39 +00:00
paboyle
ec89714cce NAMESPACE 2018-01-12 18:24:16 +00:00
paboyle
6ab744c720 NAMESPACE and formatting 2018-01-12 18:11:04 +00:00
paboyle
bbb657da5c NAMESPACE and formatting 2018-01-12 18:10:11 +00:00
paboyle
fbc2380cb8 NAMESPACE & format 2018-01-12 18:05:36 +00:00
paboyle
08682c5461 NAMESPACE and format to my liking 2018-01-12 18:03:57 +00:00
paboyle
13bce2a6bf NAMESPACE 2018-01-12 17:58:53 +00:00
paboyle
70e689900b NAMESPACE 2018-01-12 17:58:13 +00:00
paboyle
e564d11687 Allow resize of the shared memory buffers 2018-01-08 15:20:26 +00:00
paboyle
0b2162f375 Clean up 2018-01-08 14:06:53 +00:00
paboyle
44f65526e0 Simplify communicators 2018-01-08 11:35:43 +00:00
paboyle
43e48542ab Merge branch 'develop' of https://github.com/paboyle/Grid into develop 2018-01-08 11:34:45 +00:00
paboyle
0b85f1bfc8 Simplify the communicator proliferation: mpi and none. 2018-01-08 11:33:47 +00:00
paboyle
9947cfbf14 Simplify number of communicator cases 2018-01-08 11:33:01 +00:00
paboyle
357badce5e Simplify communicator case proliferation 2018-01-08 11:32:16 +00:00
paboyle
0091eec23a Simplify communicator cases 2018-01-08 11:31:32 +00:00
paboyle
9e9c2962df Simplify comms layer proliferation 2018-01-08 11:30:22 +00:00
paboyle
b91282ad46 Simplify comms layer proliferation 2018-01-08 11:28:52 +00:00
paboyle
0a68470f9a Simplify comms layers 2018-01-08 11:28:30 +00:00
paboyle
6ecf280723 Simplify comms layer proliferation 2018-01-08 11:28:04 +00:00
paboyle
7eeab7f995 Simplify comms layers 2018-01-08 11:27:43 +00:00
Antonin Portelli
f3a77f4b7f Merge branch 'feature/hadrons' into feature/hadrons-new-memory-model 2017-12-12 14:05:23 +00:00
Antonin Portelli
2401360784
Merge pull request #138 from guelpers/feature/hadrons 
bug fix in sequential insertion of conserved vector current
 2017-12-11 18:53:41 +01:00
Vera Guelpers
2cfb50cbe5 bug fix in sequential insertion of conserved vector current 2017-12-08 11:13:39 +00:00
Antonin Portelli
f9aa39e1c4 global memory debug through command line flag 2017-12-07 14:40:58 +01:00
Antonin Portelli
e78794688a memory profiler improvement 2017-12-06 16:50:25 +01:00
Antonin Portelli
29e2eddea8 Merge branch 'develop' into feature/hadrons-new-memory-model 2017-12-06 16:49:21 +01:00
Antonin Portelli
0a038ea15a Merge branch 'develop' into feature/hadrons 2017-12-06 16:49:10 +01:00
Antonin Portelli
62eb1f0e59 FermionOperator virtual destructor needed for polymorphism 2017-12-06 16:48:17 +01:00
paboyle
9579c9c327 Threading improvement 2017-12-05 14:12:22 +00:00
paboyle
c24d4c8d0e Improved parallel RNG init 2017-12-05 13:01:10 +00:00
paboyle
a14038051f Improved AllToAll asserts 2017-12-05 11:43:25 +00:00
paboyle
3e560b9462 Faster RNG init 2017-12-05 11:42:05 +00:00
paboyle
d93c6760ec Faster code for split unsplit 2017-12-05 11:39:26 +00:00
paboyle
ae3b7713a9 Cold start doesnt need RNG 2017-12-05 11:36:31 +00:00
Antonin Portelli
33cb509d4b Merge branch 'develop' into feature/hadrons 2017-12-01 19:45:32 +00:00
Antonin Portelli
456c78c233 Merge branch 'develop' into feature/hadrons-new-memory-model 2017-12-01 19:45:12 +00:00
Antonin Portelli
2fd4989029 Merge branch 'develop' of github.com:paboyle/Grid into develop 2017-12-01 19:44:31 +00:00
Antonin Portelli
2427a21428 minor serial IO fixes, XML now issues warning when trying to read absent nodes, these becomes 2017-12-01 19:44:07 +00:00
paboyle
28ceacec45 Split/Unsplit working 2017-11-27 15:13:29 +00:00
paboyle
4987edbd44 Merge branch 'develop' of https://github.com/paboyle/Grid into develop 2017-11-27 12:34:56 +00:00
paboyle
1f04e56038 Believe split/unsplit works, but need to make pretty 2017-11-27 12:33:08 +00:00
paboyle
4bfc8c85c3 Clean up verbose communicator create 2017-11-27 12:32:37 +00:00
azusayamaguchi
e55397bc13 Staggerd cg 2017-11-24 14:18:30 +00:00
paboyle
94b8fb5686 Debug in progress 2017-11-19 01:39:04 +00:00
fionnoh
1d7ccc6b2c Declaring virtual functions as pure virtual functions. 2017-11-09 19:46:57 +00:00
Azusa Yamaguchi
1860b1698c Fixed the bag on MPI_T at Cam 2017-11-08 09:03:01 +00:00
Azusa Yamaguchi
9b8d1cc3da Staggered Schur decomposed matrix norm changed to not be the Schur anymore :( 
Carleton wanted this for multimass / multishift
 2017-11-07 14:48:45 +00:00
Guido Cossu
149c3f9e9c Merge branch 'develop' of https://github.com/paboyle/Grid into develop 2017-11-07 14:01:13 +00:00
Guido Cossu
c519aab19d Fixing the MPI memory leak in the communicators 2017-11-07 13:55:37 +00:00
paboyle
69929f20bb Destructor fix. Split Grid and MPI3 will not yet work without more effort from me. 2017-11-06 23:45:00 +00:00
paboyle
360efd0088 Improved treatment of reverse asked for by chris. 
Truncate the basis.
Power method renormalises
 2017-11-02 22:05:31 +00:00
Antonin Portelli
a4e5fd1000 Merge branch 'feature/hadrons' into feature/hadrons-new-memory-model 2017-11-01 19:24:51 +00:00
Antonin Portelli
682e7d7839 Merge branch 'develop' into feature/hadrons 2017-11-01 19:24:38 +00:00
paboyle
27ea2afe86 No compile on comms == none fix 2017-10-30 01:14:11 +00:00
paboyle
a7f72eb994 SHaking out 2017-10-30 00:22:06 +00:00
paboyle
501fa1614a Communicator updates for split grid 2017-10-30 00:16:12 +00:00
paboyle
fe4d9b003c More digits 2017-10-30 00:04:47 +00:00
paboyle
4a699b4da3 New rank can be found out 2017-10-30 00:04:14 +00:00
paboyle
689323f4ee Reverse dim ordering lexico support 2017-10-30 00:03:15 +00:00
paboyle
84b441800f Merge branch 'develop' into feature/lanczos-reorg 2017-10-27 14:21:38 +01:00
paboyle
1ef424b139 Split grid Y2K bug fix attempt 2017-10-27 14:20:35 +01:00
paboyle
f96c800d25 Passes reload of coarse basis 2017-10-27 09:43:22 +01:00
paboyle
32a52d7583 Move the local coherence lanczos into algorithms. 
Keep the I/O in the tester. Other people can copy this method to write other I/O formats.
 2017-10-27 09:04:31 +01:00
paboyle
7fab183c0e Better read test 2017-10-27 08:17:49 +01:00
paboyle
9ec9850bdb 64bit ftello update 2017-10-26 23:34:31 +01:00
paboyle
0c4ddaea0b Cleaning up 2017-10-26 23:31:46 +01:00
paboyle
00ebc150ad Mistake in string parse; interface is ambiguous and must fix. Is char * a file, or a XML buffer ? 2017-10-26 23:30:37 +01:00
paboyle
0f3e9ae57d Gsites error. Only appeared (so far) in I/O code for even odd fields 2017-10-26 23:29:59 +01:00
Azusa Yamaguchi
034de160bf Staggered updates : Schur fixed and added a unit test for Test_staggered_cg_schur.cc giving stronger check 2017-10-26 20:58:46 +01:00
paboyle
31f99574fa Moving these out of algorithms 2017-10-26 07:47:42 +01:00
paboyle
a34c8a2961 Update to IRL; getting close to the structure I would like. 2017-10-26 07:45:56 +01:00
paboyle
e9be293444 Better messaging 2017-10-26 01:59:30 +01:00
paboyle
08583afaff Red black friendly coarsening 2017-10-25 23:51:18 +01:00
paboyle
b395a312af Better error messaging 2017-10-25 23:50:37 +01:00
paboyle
66295b99aa Bit less verbose SciDAC IO 2017-10-25 23:50:05 +01:00
paboyle
b8654be0ef 64 bit safe offsets 2017-10-25 23:49:23 +01:00
paboyle
f6c3f6bf2d XML serialisation of parms and initialise from parms object 2017-10-25 23:47:59 +01:00
paboyle
d83868fdbb Identity linear op added -- useful in circumstances where a linear op may or may not be needed. 
Supply a trivial one if not needed
 2017-10-25 23:47:10 +01:00
paboyle
303e0b927d Improvements for coarse grid compressed lanczos 2017-10-25 23:46:33 +01:00
paboyle
28ba8a0f48 Force spacing more nicely 2017-10-25 23:45:57 +01:00
Guido Cossu
8a3aae98f6 Solving minor bug in compilation 2017-10-25 10:34:49 +01:00
Guido Cossu
8309f2364b Solving again the MPI comm bug with FFTs 2017-10-25 10:24:14 +01:00
Guido Cossu
27936900e6 Putting the FG verbosity in the Integrator level 2017-10-18 13:08:09 +01:00
paboyle
e325929851 ALl codes compile against the new Lanczos call signature 2017-10-13 14:02:43 +01:00
paboyle
47af3565f4 Logging improvement; reunified the Lanczos codes 2017-10-13 13:23:07 +01:00
paboyle
4b4d187935 Reunified the Lanczos implementations 2017-10-13 13:22:44 +01:00
paboyle
9aff354ab5 Final version prior to reunification 2017-10-13 13:22:26 +01:00
paboyle
cb9ff20249 Approx tests and lanczos improvement 2017-10-13 11:30:50 +01:00
paboyle
9fe6ac71ea Starting reorg of Blocked lanczos 2017-10-11 10:12:07 +01:00
paboyle
bf58557fb1 Block compressed Lanczos 2017-10-10 14:15:11 +01:00
paboyle
a1d80282ec cb factorise 2017-10-10 13:49:31 +01:00
paboyle
4eb8bbbebe Christop mods 2017-10-10 13:48:51 +01:00
paboyle
d1c6288c5f Merge branch 'develop' of https://github.com/paboyle/Grid into develop 2017-10-10 13:38:40 +01:00
Azusa Yamaguchi
bb7378cfc3 Schur for staggered 2017-10-10 12:02:18 +01:00
Azusa Yamaguchi
f0e084a88c Schur staggered 2017-10-10 10:00:43 +01:00
paboyle
08ca338875 Split grid communication 2017-10-09 23:19:45 +01:00
paboyle
f7cbf82c04 Better stdout/err debug 2017-10-09 23:18:48 +01:00
paboyle
07009c569a Comms splitting improvements 2017-10-09 23:16:51 +01:00
Antonin Portelli
63b2bc1936 Merge branch 'develop' into feature/hadrons 
# Conflicts:
#	lib/qcd/action/fermion/FermionOperatorImpl.h
 2017-10-05 14:16:23 +01:00
paboyle
d54807b8c0 MPIT works with split grid now 2017-10-02 23:14:56 +01:00
paboyle
5625b47c7d Merge branch 'feature/dwf-multirhs' into develop 2017-10-02 12:42:32 +01:00
paboyle
1edcf902b7 Macos ANON 2017-10-02 12:41:02 +01:00
paboyle
4f8b6f26b4 Merge branch 'develop' into feature/dwf-multirhs 2017-10-02 11:41:49 +01:00
Guido Cossu
f7072d1ac2 Solving an annoying compilation error in json 2017-10-02 07:13:40 +01:00
Antonin Portelli
df21668f2c memory profiler update 2017-09-22 14:21:18 +01:00
paboyle
fddeb29d6b Bug fix with spreadout FFT 2017-09-21 11:10:08 +01:00
paboyle
a9ec5cf564 Christoph bug report integrate 2017-09-21 10:32:41 +01:00
Peter Boyle
946a8671b9 Merge pull request #129 from djm2131/feature/eofa 
Add support for DWF with the exact one flavor algorithm
 2017-09-21 10:15:21 +01:00
Peter Boyle
771a1b8e79 Merge pull request #128 from paboyle/feature/CG-reliable-update 
Feature/cg reliable update
 2017-09-21 10:12:03 +01:00
Peter Boyle
bfb68e6f02 Merge pull request #130 from giltirn/gparity-handunroll 
Gparity handunroll
 2017-09-21 10:11:00 +01:00
paboyle
5918769f97 Subtle Naik term bug updated in Stencil; less on logical && with a function call on right 2017-09-16 12:51:26 +01:00
Guido Cossu
1950ac9294 Fixed the Intel compiler problem with the JSON classes 2017-09-08 15:18:59 +01:00
Guido Cossu
13fa70ac1a Merge branch 'develop' into feature/json-fix 2017-09-08 13:42:20 +01:00
Guido Cossu
7cb2b11f26 Fixing Intel compiler error for the JSON parser 2017-09-08 13:41:53 +01:00
Guido Cossu
1184ed29ae Merge pull request #124 from nmeyer-ur/feature/arm-neon 
Added integer reduce functionality
 2017-09-08 10:54:35 +02:00
paboyle
203c7bf6fa Merge branch 'hotfix/dirac-ITT-fix' into develop 2017-09-05 15:08:51 +01:00
paboyle
aed5de4d50 Patching macos compile 2017-09-05 15:07:07 +01:00
paboyle
ba27cc6571 Mac os happiness 2017-09-05 15:00:16 +01:00
paboyle
d856327250 Merge branch 'release/dirac-ITT' into develop 2017-09-05 14:56:12 +01:00
Peter Boyle
bf973d0d56 SHM complete 2017-09-05 14:30:29 +01:00
Peter Boyle
837bf8a5be Updating to control the SHM allocation scheme under configure time options 2017-09-05 12:51:02 +01:00
Peter Boyle
c05b2199f6 Improvements to huge memory 2017-09-04 10:41:21 -04:00
Azusa Yamaguchi
a5fe07c077 Merge branch 'develop' of https://github.com/paboyle/Grid into develop 2017-09-04 14:10:15 +01:00
Azusa Yamaguchi
b83b2b1415 Stability improvement to BCG. Force m_rr hermitian beyond rounding. 2017-09-04 14:09:47 +01:00
paboyle
7359df3501 Full reporting for benchmark; save robustness factor 2017-08-31 10:42:35 +01:00
Christopher Kelly
59bd1fe21b Fix for 'perm' and 'local' not being set for hand-unrolled external-site Dslash, which caused incorrect behavior of G-parity kernel 2017-08-29 13:07:37 -07:00
Antonin Portelli
a56e3b40c4 Merge branch 'develop' into feature/hadrons 2017-08-29 11:03:53 -06:00
Nils Meyer
4e907fef2c Merge remote-tracking branch 'grid/develop' into feature/arm-neon 2017-08-29 17:47:36 +02:00
Christopher Kelly
74af885d4e Removed some no-longer-needed associated with G-parity hand unrolled kernel 2017-08-29 09:50:37 -04:00
paboyle
4b4c2a715b fcntl.h needed 2017-08-26 11:38:04 +01:00
paboyle
54a5e6c1d0 Check if we get huge pages on linux. Larry Meadows piece of magic. 2017-08-25 22:36:08 +01:00
paboyle
80c5bce5bb Merge branch 'develop' into feature/multi-communicator 2017-08-25 20:21:26 +01:00
paboyle
f68b5de9c8 No compile fix on Clang 2017-08-25 19:35:21 +01:00
Christopher Kelly
f365a83fae In G-parity unrolled kernel, replaced calls to permute and exchange with run-time-evaluated permute type with explicit calls to appropriate underlying functions 2017-08-25 14:24:11 -04:00
Peter Boyle
c289699d9a updated from cambridge mpi3 shakeout 2017-08-25 11:41:01 +01:00
Peter Boyle
c3b1263e75 Benchmark prep 2017-08-25 09:25:54 +01:00
Christopher Kelly
34a9aeb331 Reduced number of if-statement evaluations in G-parity unrolled kernel 2017-08-24 13:53:50 -07:00
Antonin Portelli
21b02760c3 Merge branch 'develop' into feature/hadrons 2017-08-24 17:05:45 +01:00
paboyle
5fa386ddc9 FFT test compile fixed 2017-08-24 10:17:52 +01:00
Christopher Kelly
ce5df177ee Removed superfluous implementation of G-parity twist for hand-unrolled kernel from GparityWilsonImpl 2017-08-23 15:05:22 -04:00
Christopher Kelly
a0bb8e5b46 Added hand-unrolled kernel implementations of all the other dslash precision / comms precision combinations with G-parity 2017-08-23 14:44:40 -04:00
Christopher Kelly
46f88e6d72 G-parity hand-unrolled intrinsics twist now uses one less permute and one less temporary 2017-08-23 13:21:10 -04:00
David Murphy
dd8f1ea189 Vectorized Mobius EOFA Dperp + shift operation 2017-08-23 13:17:26 -04:00
Christopher Kelly
b61835c1a5 Added inplace version of intrinsic G-parity twist to hand-unrolled kernel 2017-08-23 12:33:48 -04:00
Azusa Yamaguchi
d9cd4f0273 Staggered multinode block cg debugged. Missing global sum. 
Code stalls and resumes on KNL at cambridge. Curious.

CG iterations 23ms each, then 3200 ms pauses. Mean bandwidth reports
as 200MB/s. Comms dominant in the report. However, the time behaviour suggests it
is *bursty*.... Could be swap to disk?
 2017-08-23 15:07:18 +01:00
David Murphy
459f70e8d4 Check-in of working Mobius EOFA class and tests 2017-08-22 22:38:30 -04:00
Christopher Kelly
061e48fd73 Replaced slow unpack-repack in G-parity BC twist with intrinsics version 2017-08-22 18:12:12 -04:00
Christopher Kelly
ab50145001 Implemented first, unoptimized version of hand-unrolled G-parity kernels 
Improved Test_gparity
 2017-08-22 17:12:25 -04:00
paboyle
b49bec0cec MAP_HUGETLB portability fix 2017-08-20 03:08:54 +01:00
paboyle
1cdf999668 Moving multicommunicator into mpi3 also for threading 2017-08-20 02:39:10 +01:00
paboyle
11062fb686 Comms none fail fix 2017-08-20 01:37:07 +01:00
paboyle
a446d95c33 Trying to pass TeamCity and Travis 2017-08-20 01:10:50 +01:00
paboyle
be66e7dd95 Merge branch 'develop' into feature/multi-communicator 2017-08-19 23:12:38 +01:00
Peter Boyle
0b0cf62193 Fix mpi 3 interface change 2017-08-19 13:18:50 -04:00
Peter Boyle
7d88198387 Merge branch 'develop' into feature/multi-communicator 2017-08-19 13:03:35 -04:00
Peter Boyle
2f619482b8 Enable blocking stencil send 2017-08-19 12:53:59 -04:00
Peter Boyle
d6472eda8d Use mmap 2017-08-19 12:53:18 -04:00
Peter Boyle
bcefdd7c4e Align both allocator calls to 2MB 2017-08-19 12:49:02 -04:00
David Murphy
9d45fca8bc Implement MobiusEOFAFermioncache.cc 2017-08-17 23:45:36 -04:00
David Murphy
ac9e6b63c0 More re-import of Mobius EOFA 2017-08-17 19:28:53 -04:00
David Murphy
e140b3f802 Beginning to re-import Mobius EOFA 2017-08-16 23:36:23 -04:00
David Murphy
d9d3d30cc7 Minor clean-up 2017-08-16 20:57:51 -04:00
David Murphy
47a12ec7b5 Implement EOFA pseudofermion force and Shamir tests for G-parity and non G-parity cases 2017-08-16 19:50:08 -04:00
David Murphy
ec1e2f7a40 Add (mostly implemented) ExactOneFlavourRatio pseudofermion class and tests of Shamir heatbath and action 2017-08-16 12:38:59 -04:00
David Murphy
41f73ec083 Add ChronoForecast class for forecasting solutions across poles in the EOFA heatbath 2017-08-16 12:37:38 -04:00
Guido Cossu
fd367d8bfd Debugging the PointerCache 2017-08-16 09:42:57 +01:00
David Murphy
6d0786ff9d Typo fixes and check-in of G-parity action test for DWF 2017-08-15 22:47:00 -04:00
David Murphy
b7f93aeb4d Change CayleyFermion5D::SetCoefficientsInternal to virtual to allow overriding in derived EOFA classes 2017-08-15 14:18:51 -04:00
David Murphy
202a7fe900 Re-import DWF and abstract base EOFA fermion classes and tests 2017-08-15 13:36:08 -04:00
Guido Cossu
8a3fe60a27 Added more asserts at grid creation time 2017-08-08 11:36:20 +01:00
Guido Cossu
44051aecd1 Checking for integer divisions in cartesian full 2017-08-08 10:31:12 +01:00