Nodes on padded cell

Unused statements generating warnings removed

.github/ISSUE_TEMPLATE/bug-report.yml

@@ -0,0 +1,54 @@
+name: Bug report
+description: Report a bug.
+title: "<insert title>"
+labels: [bug]
+
+body:
+  - type: markdown
+    attributes:
+      value: >
+        Thank you for taking the time to file a bug report.
+        Please check that the code is pointing to the HEAD of develop
+        or any commit in master which is tagged with a version number.
+
+  - type: textarea
+    attributes:
+      label: "Describe the issue:"
+      description: >
+        Describe the issue and any previous attempt to solve it.
+    validations:
+      required: true
+
+  - type: textarea
+    attributes:
+      label: "Code example:"
+      description: >
+        If relevant, show how to reproduce the issue using a minimal working
+        example.
+      placeholder: |
+        << your code here >>
+      render: shell
+    validations:
+      required: false
+
+  - type: textarea
+    attributes:
+      label: "Target platform:"
+      description: >
+        Give a description of the target platform (CPU, network, compiler).
+        Please give the full CPU part description, using for example
+        `cat /proc/cpuinfo | grep 'model name' | uniq` (Linux)
+        or `sysctl machdep.cpu.brand_string` (macOS) and the full output
+        the `--version` option of your compiler.
+    validations:
+      required: true
+
+  - type: textarea
+    attributes:
+      label: "Configure options:"
+      description: >
+        Please give the exact configure command used and attach
+        `config.log`, `grid.config.summary` and the output of `make V=1`.
+      render: shell
+    validations:
+      required: true

Grid/algorithms/LinearOperator.h

@@ -542,6 +542,7 @@ public:
       (*this)(in[i], out[i]);
     }
   }
+  virtual ~LinearFunction(){};
 };
 
 template<class Field> class IdentityLinearFunction : public LinearFunction<Field> {

Grid/algorithms/iterative/ConjugateGradientMultiShiftCleanup.h

@@ -166,16 +166,16 @@ public:
       rsqf[s] =rsq[s];
       std::cout<<GridLogMessage<<"ConjugateGradientMultiShiftMixedPrecCleanup: shift "<< s <<" target resid "<<rsq[s]<<std::endl;
       //      ps_d[s] = src_d;
-      precisionChangeFast(ps_f[s],src_d);
+      precisionChange(ps_f[s],src_d);
     }
     // r and p for primary
     p_d = src_d; //primary copy --- make this a reference to ps_d to save axpys
     r_d = p_d;
     
     //MdagM+m[0]
-    precisionChangeFast(p_f,p_d);
+    precisionChange(p_f,p_d);
     Linop_f.HermOpAndNorm(p_f,mmp_f,d,qq); // mmp = MdagM p        d=real(dot(p, mmp)),  qq=norm2(mmp)
-    precisionChangeFast(tmp_d,mmp_f);
+    precisionChange(tmp_d,mmp_f);
     Linop_d.HermOpAndNorm(p_d,mmp_d,d,qq); // mmp = MdagM p        d=real(dot(p, mmp)),  qq=norm2(mmp)
     tmp_d = tmp_d - mmp_d;
     std::cout << " Testing operators match "<<norm2(mmp_d)<<" f "<<norm2(mmp_f)<<" diff "<< norm2(tmp_d)<<std::endl;
@@ -204,7 +204,7 @@ public:
   
     for(int s=0;s<nshift;s++) {
       axpby(psi_d[s],0.,-bs[s]*alpha[s],src_d,src_d);
-      precisionChangeFast(psi_f[s],psi_d[s]);
+      precisionChange(psi_f[s],psi_d[s]);
     }
   
     ///////////////////////////////////////
@@ -225,7 +225,7 @@ public:
       AXPYTimer.Stop();
 
       PrecChangeTimer.Start();
-      precisionChangeFast(r_f, r_d);
+      precisionChange(r_f, r_d);
       PrecChangeTimer.Stop();
 
       AXPYTimer.Start();
@@ -243,13 +243,13 @@ public:
 
       cp=c;
       PrecChangeTimer.Start();
-      precisionChangeFast(p_f, p_d); //get back single prec search direction for linop
+      precisionChange(p_f, p_d); //get back single prec search direction for linop
       PrecChangeTimer.Stop();
       MatrixTimer.Start();  
       Linop_f.HermOp(p_f,mmp_f);
       MatrixTimer.Stop();  
       PrecChangeTimer.Start();
-      precisionChangeFast(mmp_d, mmp_f); // From Float to Double
+      precisionChange(mmp_d, mmp_f); // From Float to Double
       PrecChangeTimer.Stop();
 
       d=real(innerProduct(p_d,mmp_d));    
@@ -311,7 +311,7 @@ public:
 	SolverTimer.Stop();
 
 	for(int s=0;s<nshift;s++){
-	  precisionChangeFast(psi_d[s],psi_f[s]);
+	  precisionChange(psi_d[s],psi_f[s]);
 	}
 
 	

Grid/algorithms/iterative/ConjugateGradientMultiShiftMixedPrec.h

@@ -211,7 +211,7 @@ public:
     Linop_d.HermOpAndNorm(p_d,mmp_d,d,qq); // mmp = MdagM p        d=real(dot(p, mmp)),  qq=norm2(mmp)
     tmp_d = tmp_d - mmp_d;
     std::cout << " Testing operators match "<<norm2(mmp_d)<<" f "<<norm2(mmp_f)<<" diff "<< norm2(tmp_d)<<std::endl;
-    //    assert(norm2(tmp_d)< 1.0e-4);
+    assert(norm2(tmp_d)< 1.0);
 
     axpy(mmp_d,mass[0],p_d,mmp_d);
     RealD rn = norm2(p_d);

Grid/communicator/SharedMemoryMPI.cc

@@ -27,9 +27,10 @@ Author: Christoph Lehner <christoph@lhnr.de>
 *************************************************************************************/
 /*  END LEGAL */
 
+#define header "SharedMemoryMpi: "
+
 #include <Grid/GridCore.h>
 #include <pwd.h>
-#include <syscall.h>
 
 #ifdef GRID_CUDA
 #include <cuda_runtime_api.h>
@@ -39,11 +40,118 @@ Author: Christoph Lehner <christoph@lhnr.de>
 #endif
 #ifdef GRID_SYCL
 #define GRID_SYCL_LEVEL_ZERO_IPC
+#include <syscall.h>
+#define SHM_SOCKETS 
+#endif
+
+#include <sys/socket.h>
+#include <sys/un.h>
+
+NAMESPACE_BEGIN(Grid); 
+
+#ifdef SHM_SOCKETS
+
+/*
+ * Barbaric extra intranode communication route in case we need sockets to pass FDs
+ * Forced by level_zero not being nicely designed
+ */
+static int sock;
+static const char *sock_path_fmt = "/tmp/GridUnixSocket.%d";
+static char sock_path[256];
+class UnixSockets {
+public:
+  static void Open(int rank)
+  {
+    int errnum;
+
+    sock = socket(AF_UNIX, SOCK_DGRAM, 0);  assert(sock>0);
+
+    struct sockaddr_un sa_un = { 0 };
+    sa_un.sun_family = AF_UNIX;
+    snprintf(sa_un.sun_path, sizeof(sa_un.sun_path),sock_path_fmt,rank);
+    unlink(sa_un.sun_path);
+    if (bind(sock, (struct sockaddr *)&sa_un, sizeof(sa_un))) {
+      perror("bind failure");
+      exit(EXIT_FAILURE);
+    }
+  }
+
+  static int RecvFileDescriptor(void)
+  {
+    int n;
+    int fd;
+    char buf[1];
+    struct iovec iov;
+    struct msghdr msg;
+    struct cmsghdr *cmsg;
+    char cms[CMSG_SPACE(sizeof(int))];
+
+    iov.iov_base = buf;
+    iov.iov_len = 1;
+
+    memset(&msg, 0, sizeof msg);
+    msg.msg_name = 0;
+    msg.msg_namelen = 0;
+    msg.msg_iov = &iov;
+    msg.msg_iovlen = 1;
+
+    msg.msg_control = (caddr_t)cms;
+    msg.msg_controllen = sizeof cms;
+
+    if((n=recvmsg(sock, &msg, 0)) < 0) {
+      perror("recvmsg failed");
+      return -1;
+    }
+    if(n == 0){
+      perror("recvmsg returned 0");
+      return -1;
+    }
+    cmsg = CMSG_FIRSTHDR(&msg);
+
+    memmove(&fd, CMSG_DATA(cmsg), sizeof(int));
+
+    return fd;
+  }
+
+  static void SendFileDescriptor(int fildes,int xmit_to_rank)
+  {
+    struct msghdr msg;
+    struct iovec iov;
+    struct cmsghdr *cmsg = NULL;
+    char ctrl[CMSG_SPACE(sizeof(int))];
+    char data = ' ';
+
+    memset(&msg, 0, sizeof(struct msghdr));
+    memset(ctrl, 0, CMSG_SPACE(sizeof(int)));
+    iov.iov_base = &data;
+    iov.iov_len = sizeof(data);
+    
+    sprintf(sock_path,sock_path_fmt,xmit_to_rank);
+    
+    struct sockaddr_un sa_un = { 0 };
+    sa_un.sun_family = AF_UNIX;
+    snprintf(sa_un.sun_path, sizeof(sa_un.sun_path),sock_path_fmt,xmit_to_rank);
+
+    msg.msg_name = (void *)&sa_un;
+    msg.msg_namelen = sizeof(sa_un);
+    msg.msg_iov = &iov;
+    msg.msg_iovlen = 1;
+    msg.msg_controllen =  CMSG_SPACE(sizeof(int));
+    msg.msg_control = ctrl;
+
+    cmsg = CMSG_FIRSTHDR(&msg);
+    cmsg->cmsg_level = SOL_SOCKET;
+    cmsg->cmsg_type = SCM_RIGHTS;
+    cmsg->cmsg_len = CMSG_LEN(sizeof(int));
+
+    *((int *) CMSG_DATA(cmsg)) = fildes;
+
+    sendmsg(sock, &msg, 0);
+  };
+};
 #endif
 
 
-NAMESPACE_BEGIN(Grid); 
-#define header "SharedMemoryMpi: "
 /*Construct from an MPI communicator*/
 void GlobalSharedMemory::Init(Grid_MPI_Comm comm)
 {
@@ -480,8 +588,13 @@ void GlobalSharedMemory::SharedMemoryAllocate(uint64_t bytes, int flags)
   ///////////////////////////////////////////////////////////////////////////////////////////////////////////
   // Loop over ranks/gpu's on our node
   ///////////////////////////////////////////////////////////////////////////////////////////////////////////
+#ifdef SHM_SOCKETS
+  UnixSockets::Open(WorldShmRank);
+#endif
   for(int r=0;r<WorldShmSize;r++){
 
+    MPI_Barrier(WorldShmComm);
+
 #ifndef GRID_MPI3_SHM_NONE
     //////////////////////////////////////////////////
     // If it is me, pass around the IPC access key
@@ -489,24 +602,32 @@ void GlobalSharedMemory::SharedMemoryAllocate(uint64_t bytes, int flags)
     void * thisBuf = ShmCommBuf;
     if(!Stencil_force_mpi) {
 #ifdef GRID_SYCL_LEVEL_ZERO_IPC
-    typedef struct { int fd; pid_t pid ; } clone_mem_t;
+    typedef struct { int fd; pid_t pid ; ze_ipc_mem_handle_t ze; } clone_mem_t;
 
     auto zeDevice    = cl::sycl::get_native<cl::sycl::backend::level_zero>(theGridAccelerator->get_device());
     auto zeContext   = cl::sycl::get_native<cl::sycl::backend::level_zero>(theGridAccelerator->get_context());
       
     ze_ipc_mem_handle_t ihandle;
     clone_mem_t handle;
-
+    
     if ( r==WorldShmRank ) { 
       auto err = zeMemGetIpcHandle(zeContext,ShmCommBuf,&ihandle);
       if ( err != ZE_RESULT_SUCCESS ) {
-	std::cout << "SharedMemoryMPI.cc zeMemGetIpcHandle failed for rank "<<r<<" "<<std::hex<<err<<std::dec<<std::endl;
+	std::cerr << "SharedMemoryMPI.cc zeMemGetIpcHandle failed for rank "<<r<<" "<<std::hex<<err<<std::dec<<std::endl;
 	exit(EXIT_FAILURE);
       } else {
 	std::cout << "SharedMemoryMPI.cc zeMemGetIpcHandle succeeded for rank "<<r<<" "<<std::hex<<err<<std::dec<<std::endl;
       }
       memcpy((void *)&handle.fd,(void *)&ihandle,sizeof(int));
       handle.pid = getpid();
+      memcpy((void *)&handle.ze,(void *)&ihandle,sizeof(ihandle));
+#ifdef SHM_SOCKETS
+      for(int rr=0;rr<WorldShmSize;rr++){
+	if(rr!=r){
+	  UnixSockets::SendFileDescriptor(handle.fd,rr);
+	}
+      }
+#endif
     }
 #endif
 #ifdef GRID_CUDA
@@ -534,6 +655,7 @@ void GlobalSharedMemory::SharedMemoryAllocate(uint64_t bytes, int flags)
     // Share this IPC handle across the Shm Comm
     //////////////////////////////////////////////////
     { 
+      MPI_Barrier(WorldShmComm);
       int ierr=MPI_Bcast(&handle,
 			 sizeof(handle),
 			 MPI_BYTE,
@@ -549,6 +671,10 @@ void GlobalSharedMemory::SharedMemoryAllocate(uint64_t bytes, int flags)
 #ifdef GRID_SYCL_LEVEL_ZERO_IPC
     if ( r!=WorldShmRank ) {
       thisBuf = nullptr;
+      int myfd;
+#ifdef SHM_SOCKETS
+      myfd=UnixSockets::RecvFileDescriptor();
+#else
       std::cout<<"mapping seeking remote pid/fd "
 	       <<handle.pid<<"/"
 	       <<handle.fd<<std::endl;
@@ -556,16 +682,22 @@ void GlobalSharedMemory::SharedMemoryAllocate(uint64_t bytes, int flags)
       int pidfd = syscall(SYS_pidfd_open,handle.pid,0);
       std::cout<<"Using IpcHandle pidfd "<<pidfd<<"\n";
       //      int myfd  = syscall(SYS_pidfd_getfd,pidfd,handle.fd,0);
-      int myfd  = syscall(438,pidfd,handle.fd,0);
+      myfd  = syscall(438,pidfd,handle.fd,0);
-
+      int err_t = errno;
-      std::cout<<"Using IpcHandle myfd "<<myfd<<"\n";
+      if (myfd < 0) {
-      
+        fprintf(stderr,"pidfd_getfd returned %d errno was %d\n", myfd,err_t); fflush(stderr);
+	perror("pidfd_getfd failed ");
+	assert(0);
+      }
+#endif
+      std::cout<<"Using IpcHandle mapped remote pid "<<handle.pid <<" FD "<<handle.fd <<" to myfd "<<myfd<<"\n";
+      memcpy((void *)&ihandle,(void *)&handle.ze,sizeof(ihandle));
       memcpy((void *)&ihandle,(void *)&myfd,sizeof(int));
 
       auto err = zeMemOpenIpcHandle(zeContext,zeDevice,ihandle,0,&thisBuf);
       if ( err != ZE_RESULT_SUCCESS ) {
-	std::cout << "SharedMemoryMPI.cc "<<zeContext<<" "<<zeDevice<<std::endl;
+	std::cerr << "SharedMemoryMPI.cc "<<zeContext<<" "<<zeDevice<<std::endl;
-	std::cout << "SharedMemoryMPI.cc zeMemOpenIpcHandle failed for rank "<<r<<" "<<std::hex<<err<<std::dec<<std::endl; 
+	std::cerr << "SharedMemoryMPI.cc zeMemOpenIpcHandle failed for rank "<<r<<" "<<std::hex<<err<<std::dec<<std::endl; 
 	exit(EXIT_FAILURE);
       } else {
 	std::cout << "SharedMemoryMPI.cc zeMemOpenIpcHandle succeeded for rank "<<r<<std::endl;
@@ -600,6 +732,7 @@ void GlobalSharedMemory::SharedMemoryAllocate(uint64_t bytes, int flags)
 #else
     WorldShmCommBufs[r] = ShmCommBuf;
 #endif
+    MPI_Barrier(WorldShmComm);
   }
 
   _ShmAllocBytes=bytes;

Grid/lattice/Lattice_transfer.h

@@ -707,9 +707,9 @@ void localCopyRegion(const Lattice<vobj> &From,Lattice<vobj> & To,Coordinate Fro
   Coordinate ist = Tg->_istride;
   Coordinate ost = Tg->_ostride;
 
-  autoView( t_v , To, AcceleratorWrite);
+  autoView( t_v , To, CpuWrite);
-  autoView( f_v , From, AcceleratorRead);
+  autoView( f_v , From, CpuRead);
-  accelerator_for(idx,Fg->lSites(),1,{
+  thread_for(idx,Fg->lSites(),{
     sobj s;
     Coordinate Fcoor(nd);
     Coordinate Tcoor(nd);
@@ -722,15 +722,20 @@ void localCopyRegion(const Lattice<vobj> &From,Lattice<vobj> & To,Coordinate Fro
       Tcoor[d] = ToLowerLeft[d]+ Fcoor[d]-FromLowerLeft[d];
     }
     if (in_region) {
-      Integer idx_f = 0; for(int d=0;d<nd;d++) idx_f+=isf[d]*(Fcoor[d]/rdf[d]);
+#if 0      
-      Integer idx_t = 0; for(int d=0;d<nd;d++) idx_t+=ist[d]*(Tcoor[d]/rdt[d]);
+      Integer idx_f = 0; for(int d=0;d<nd;d++) idx_f+=isf[d]*(Fcoor[d]/rdf[d]); // inner index from
-      Integer odx_f = 0; for(int d=0;d<nd;d++) odx_f+=osf[d]*(Fcoor[d]%rdf[d]);
+      Integer idx_t = 0; for(int d=0;d<nd;d++) idx_t+=ist[d]*(Tcoor[d]/rdt[d]); // inner index to
-      Integer odx_t = 0; for(int d=0;d<nd;d++) odx_t+=ost[d]*(Tcoor[d]%rdt[d]);
+      Integer odx_f = 0; for(int d=0;d<nd;d++) odx_f+=osf[d]*(Fcoor[d]%rdf[d]); // outer index from
-      vector_type * fp = (vector_type *)&f_v[odx_f];
+      Integer odx_t = 0; for(int d=0;d<nd;d++) odx_t+=ost[d]*(Tcoor[d]%rdt[d]); // outer index to
-      vector_type * tp = (vector_type *)&t_v[odx_t];
+      scalar_type * fp = (scalar_type *)&f_v[odx_f];
+      scalar_type * tp = (scalar_type *)&t_v[odx_t];
       for(int w=0;w<words;w++){
 	tp[w].putlane(fp[w].getlane(idx_f),idx_t);
       }
+#else
+    peekLocalSite(s,f_v,Fcoor);
+    pokeLocalSite(s,t_v,Tcoor);
+#endif
     }
   });
 }
@@ -841,9 +846,9 @@ void InsertSliceLocal(const Lattice<vobj> &lowDim, Lattice<vobj> & higherDim,int
 
   for(int d=0;d<nh;d++){
     if ( d!=orthog ) {
-    assert(lg->_processors[d]  == hg->_processors[d]);
+      assert(lg->_processors[d]  == hg->_processors[d]);
-    assert(lg->_ldimensions[d] == hg->_ldimensions[d]);
+      assert(lg->_ldimensions[d] == hg->_ldimensions[d]);
-  }
+    }
   }
 
   // the above should guarantee that the operations are local

Grid/lattice/PaddedCell.h

@@ -0,0 +1,136 @@
+/*************************************************************************************
+    Grid physics library, www.github.com/paboyle/Grid 
+
+    Source file: ./lib/lattice/PaddedCell.h
+
+    Copyright (C) 2019
+
+Author: Peter Boyle pboyle@bnl.gov
+
+    This program is free software; you can redistribute it and/or modify
+    it under the terms of the GNU General Public License as published by
+    the Free Software Foundation; either version 2 of the License, or
+    (at your option) any later version.
+
+    This program is distributed in the hope that it will be useful,
+    but WITHOUT ANY WARRANTY; without even the implied warranty of
+    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+    GNU General Public License for more details.
+
+    You should have received a copy of the GNU General Public License along
+    with this program; if not, write to the Free Software Foundation, Inc.,
+    51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
+
+    See the full license in the file "LICENSE" in the top level distribution directory
+*************************************************************************************/
+/*  END LEGAL */
+#pragma once
+
+NAMESPACE_BEGIN(Grid);
+
+class PaddedCell {
+public:
+  GridCartesian * unpadded_grid;
+  int dims;
+  int depth;
+  std::vector<GridCartesian *> grids;
+  ~PaddedCell()
+  {
+    DeleteGrids();
+  }
+  PaddedCell(int _depth,GridCartesian *_grid)
+  {
+    unpadded_grid = _grid;
+    depth=_depth;
+    dims=_grid->Nd();
+    AllocateGrids();
+    Coordinate local     =unpadded_grid->LocalDimensions();
+    for(int d=0;d<dims;d++){
+      assert(local[d]>=depth);
+    }
+  }
+  void DeleteGrids(void)
+  {
+    for(int d=0;d<grids.size();d++){
+      delete grids[d];
+    }
+    grids.resize(0);
+  };
+  void AllocateGrids(void)
+  {
+    Coordinate local     =unpadded_grid->LocalDimensions();
+    Coordinate simd      =unpadded_grid->_simd_layout;
+    Coordinate processors=unpadded_grid->_processors;
+    Coordinate plocal    =unpadded_grid->LocalDimensions();
+    Coordinate global(dims);
+
+    // expand up one dim at a time
+    for(int d=0;d<dims;d++){
+
+      plocal[d] += 2*depth; 
+
+      for(int d=0;d<dims;d++){
+	global[d] = plocal[d]*processors[d];
+      }
+
+      grids.push_back(new GridCartesian(global,simd,processors));
+    }
+  };
+  template<class vobj>
+  inline Lattice<vobj> Extract(Lattice<vobj> &in)
+  {
+    Lattice<vobj> out(unpadded_grid);
+
+    Coordinate local     =unpadded_grid->LocalDimensions();
+    Coordinate fll(dims,depth); // depends on the MPI spread
+    Coordinate tll(dims,0); // depends on the MPI spread
+    localCopyRegion(in,out,fll,tll,local);
+    return out;
+  }
+  template<class vobj>
+  inline Lattice<vobj> Exchange(Lattice<vobj> &in)
+  {
+    GridBase *old_grid = in.Grid();
+    int dims = old_grid->Nd();
+    Lattice<vobj> tmp = in;
+    for(int d=0;d<dims;d++){
+      tmp = Expand(d,tmp); // rvalue && assignment
+    }
+    return tmp;
+  }
+  // expand up one dim at a time
+  template<class vobj>
+  inline Lattice<vobj> Expand(int dim,Lattice<vobj> &in)
+  {
+    GridBase *old_grid = in.Grid();
+    GridCartesian *new_grid = grids[dim];//These are new grids
+    Lattice<vobj>  padded(new_grid);
+    Lattice<vobj> shifted(old_grid);    
+    Coordinate local     =old_grid->LocalDimensions();
+    Coordinate plocal    =new_grid->LocalDimensions();
+    if(dim==0) conformable(old_grid,unpadded_grid);
+    else       conformable(old_grid,grids[dim-1]);
+
+    std::cout << " dim "<<dim<<" local "<<local << " padding to "<<plocal<<std::endl;
+    // Middle bit
+    for(int x=0;x<local[dim];x++){
+      InsertSliceLocal(in,padded,x,depth+x,dim);
+    }
+    // High bit
+    shifted = Cshift(in,dim,depth);
+    for(int x=0;x<depth;x++){
+      InsertSliceLocal(shifted,padded,local[dim]-depth+x,depth+local[dim]+x,dim);
+    }
+    // Low bit
+    shifted = Cshift(in,dim,-depth);
+    for(int x=0;x<depth;x++){
+      InsertSliceLocal(shifted,padded,x,x,dim);
+    }
+    return padded;
+  }
+
+};
+ 
+
+NAMESPACE_END(Grid);
+

Grid/qcd/QCD.h

@@ -104,6 +104,7 @@ template<typename vtype> using iSpinMatrix                = iScalar<iMatrix<iSca
 template<typename vtype> using iColourMatrix              = iScalar<iScalar<iMatrix<vtype, Nc> > > ;
 template<typename vtype> using iSpinColourMatrix          = iScalar<iMatrix<iMatrix<vtype, Nc>, Ns> >;
 template<typename vtype> using iLorentzColourMatrix       = iVector<iScalar<iMatrix<vtype, Nc> >, Nd > ;
+template<typename vtype> using iLorentzComplex            = iVector<iScalar<iScalar<vtype> >, Nd > ;
 template<typename vtype> using iDoubleStoredColourMatrix  = iVector<iScalar<iMatrix<vtype, Nc> >, Nds > ;
 template<typename vtype> using iSpinVector                = iScalar<iVector<iScalar<vtype>, Ns> >;
 template<typename vtype> using iColourVector              = iScalar<iScalar<iVector<vtype, Nc> > >;
@@ -178,6 +179,15 @@ typedef iLorentzColourMatrix<vComplexF>  vLorentzColourMatrixF;
 typedef iLorentzColourMatrix<vComplexD>  vLorentzColourMatrixD;
 typedef iLorentzColourMatrix<vComplexD2> vLorentzColourMatrixD2;
 
+// LorentzComplex
+typedef iLorentzComplex<Complex  > LorentzComplex;
+typedef iLorentzComplex<ComplexF > LorentzComplexF;
+typedef iLorentzComplex<ComplexD > LorentzComplexD;
+
+typedef iLorentzComplex<vComplex > vLorentzComplex;
+typedef iLorentzComplex<vComplexF> vLorentzComplexF;
+typedef iLorentzComplex<vComplexD> vLorentzComplexD;
+
 // DoubleStored gauge field
 typedef iDoubleStoredColourMatrix<Complex  > DoubleStoredColourMatrix;
 typedef iDoubleStoredColourMatrix<ComplexF > DoubleStoredColourMatrixF;
@@ -307,6 +317,10 @@ typedef Lattice<vLorentzColourMatrixF>  LatticeLorentzColourMatrixF;
 typedef Lattice<vLorentzColourMatrixD>  LatticeLorentzColourMatrixD;
 typedef Lattice<vLorentzColourMatrixD2> LatticeLorentzColourMatrixD2;
 
+typedef Lattice<vLorentzComplex>  LatticeLorentzComplex;
+typedef Lattice<vLorentzComplexF> LatticeLorentzComplexF;
+typedef Lattice<vLorentzComplexD> LatticeLorentzComplexD;
+
 // DoubleStored gauge field
 typedef Lattice<vDoubleStoredColourMatrix>   LatticeDoubleStoredColourMatrix;
 typedef Lattice<vDoubleStoredColourMatrixF>  LatticeDoubleStoredColourMatrixF;

Grid/qcd/action/fermion/WilsonCompressor.h

@@ -507,6 +507,7 @@ public:
     }
     this->face_table_computed=1;
     assert(this->u_comm_offset==this->_unified_buffer_size);
+    accelerator_barrier();
   }
 
 };

Grid/qcd/action/fermion/implementation/WilsonFermion5DImplementation.h

@@ -332,8 +332,7 @@ void WilsonFermion5D<Impl>::DhopInternalOverlappedComms(StencilImpl & st, Lebesg
   /////////////////////////////
   {
     GRID_TRACE("Gather");
-    st.HaloExchangeOptGather(in,compressor);
+    st.HaloExchangeOptGather(in,compressor); // Put the barrier in the routine
-    accelerator_barrier();
   }
   
   std::vector<std::vector<CommsRequest_t> > requests;

Grid/qcd/action/fermion/implementation/WilsonKernelsImplementation.h

@@ -428,9 +428,10 @@ void WilsonKernels<Impl>::DhopDirKernel( StencilImpl &st, DoubledGaugeField &U,S
   auto ptr = &st.surface_list[0];					\
   accelerator_forNB( ss, sz, Simd::Nsimd(), {				\
       int sF = ptr[ss];							\
-      int sU = ss/Ls;							\
+      int sU = sF/Ls;							\
       WilsonKernels<Impl>::A(st_v,U_v,buf,sF,sU,in_v,out_v);		\
-    });									
+    });									\
+  accelerator_barrier();
 
 #define ASM_CALL(A)							\
   thread_for( sss, Nsite, {						\
@@ -474,9 +475,10 @@ void WilsonKernels<Impl>::DhopKernel(int Opt,StencilImpl &st,  DoubledGaugeField
      if (Opt == WilsonKernelsStatic::OptInlineAsm  ) {  ASM_CALL(AsmDhopSiteInt);    return;}
 #endif
    } else if( exterior ) {
+     // dependent on result of merge
      acceleratorFenceComputeStream();
-     if (Opt == WilsonKernelsStatic::OptGeneric    ) { KERNEL_CALL(GenericDhopSiteExt); return;}
+     if (Opt == WilsonKernelsStatic::OptGeneric    ) { KERNEL_CALL_EXT(GenericDhopSiteExt); return;}
-     if (Opt == WilsonKernelsStatic::OptHandUnroll ) { KERNEL_CALL(HandDhopSiteExt);    return;}
+     if (Opt == WilsonKernelsStatic::OptHandUnroll ) { KERNEL_CALL_EXT(HandDhopSiteExt);    return;}
 #ifndef GRID_CUDA
      if (Opt == WilsonKernelsStatic::OptInlineAsm  ) {  ASM_CALL(AsmDhopSiteExt);    return;}
 #endif
@@ -506,9 +508,10 @@ void WilsonKernels<Impl>::DhopKernel(int Opt,StencilImpl &st,  DoubledGaugeField
      if (Opt == WilsonKernelsStatic::OptInlineAsm  ) {  ASM_CALL(AsmDhopSiteDagInt);     return;}
 #endif
    } else if( exterior ) {
+     // Dependent on result of merge
      acceleratorFenceComputeStream();
-     if (Opt == WilsonKernelsStatic::OptGeneric    ) { KERNEL_CALL(GenericDhopSiteDagExt); return;}
+     if (Opt == WilsonKernelsStatic::OptGeneric    ) { KERNEL_CALL_EXT(GenericDhopSiteDagExt); return;}
-     if (Opt == WilsonKernelsStatic::OptHandUnroll ) { KERNEL_CALL(HandDhopSiteDagExt);    return;}
+     if (Opt == WilsonKernelsStatic::OptHandUnroll ) { KERNEL_CALL_EXT(HandDhopSiteDagExt);    return;}
 #ifndef GRID_CUDA
      if (Opt == WilsonKernelsStatic::OptInlineAsm  ) {  ASM_CALL(AsmDhopSiteDagExt);     return;}
 #endif

Grid/qcd/action/pseudofermion/GeneralEvenOddRationalRatioMixedPrec.h

@@ -53,9 +53,10 @@ NAMESPACE_BEGIN(Grid);
       Integer ReliableUpdateFreq;
     protected:
 
+      //Action evaluation
       //Allow derived classes to override the multishift CG
       virtual void multiShiftInverse(bool numerator, const MultiShiftFunction &approx, const Integer MaxIter, const FermionFieldD &in, FermionFieldD &out){
-#if 0
+#if 1
 	SchurDifferentiableOperator<ImplD> schurOp(numerator ? NumOpD : DenOpD);
 	ConjugateGradientMultiShift<FermionFieldD> msCG(MaxIter, approx);
 	msCG(schurOp,in, out);
@@ -70,9 +71,10 @@ NAMESPACE_BEGIN(Grid);
 	msCG(schurOpD, in, out);
 #endif
       }
+      //Force evaluation
       virtual void multiShiftInverse(bool numerator, const MultiShiftFunction &approx, const Integer MaxIter, const FermionFieldD &in, std::vector<FermionFieldD> &out_elems, FermionFieldD &out){
 	SchurDifferentiableOperator<ImplD> schurOpD(numerator ? NumOpD : DenOpD);
-	SchurDifferentiableOperator<ImplF>  schurOpF (numerator ? NumOpF  : DenOpF);
+	SchurDifferentiableOperator<ImplF>  schurOpF(numerator ? NumOpF  : DenOpF);
 
 	FermionFieldD inD(NumOpD.FermionRedBlackGrid());
 	FermionFieldD outD(NumOpD.FermionRedBlackGrid());
@@ -84,20 +86,15 @@ NAMESPACE_BEGIN(Grid);
       virtual void ImportGauge(const typename ImplD::GaugeField &Ud){
 
 	typename ImplF::GaugeField Uf(NumOpF.GaugeGrid());
-	typename ImplD::GaugeField Ud2(NumOpD.GaugeGrid());
 	precisionChange(Uf, Ud);
-	precisionChange(Ud2, Ud);
 
-	std::cout << "Importing "<<norm2(Ud)<<" "<< norm2(Uf)<<" " << norm2(Ud2)<<std::endl;
+	std::cout << "Importing "<<norm2(Ud)<<" "<< norm2(Uf)<<" " <<std::endl;
 	
 	NumOpD.ImportGauge(Ud);
 	DenOpD.ImportGauge(Ud);
 
 	NumOpF.ImportGauge(Uf);
 	DenOpF.ImportGauge(Uf);
-
-	NumOpD.ImportGauge(Ud2);
-	DenOpD.ImportGauge(Ud2);
       }
       
     public:

Grid/qcd/action/pseudofermion/TwoFlavourEvenOddRatio.h

@@ -207,20 +207,27 @@ NAMESPACE_BEGIN(Grid);
         //X = (Mdag M)^-1 V^dag phi
         //Y = (Mdag)^-1 V^dag  phi
         Vpc.MpcDag(PhiOdd,Y);          // Y= Vdag phi
+	std::cout << GridLogMessage <<" Y "<<norm2(Y)<<std::endl;
         X=Zero();
         DerivativeSolver(Mpc,Y,X);     // X= (MdagM)^-1 Vdag phi
+	std::cout << GridLogMessage <<" X "<<norm2(X)<<std::endl;
         Mpc.Mpc(X,Y);                  // Y=  Mdag^-1 Vdag phi
+	std::cout << GridLogMessage <<" Y "<<norm2(Y)<<std::endl;
 
         // phi^dag V (Mdag M)^-1 dV^dag  phi
         Vpc.MpcDagDeriv(force , X, PhiOdd );   dSdU = force;
+	std::cout << GridLogMessage <<" deriv "<<norm2(force)<<std::endl;
   
         // phi^dag dV (Mdag M)^-1 V^dag  phi
         Vpc.MpcDeriv(force , PhiOdd, X );      dSdU = dSdU+force;
+	std::cout << GridLogMessage <<" deriv "<<norm2(force)<<std::endl;
 
         //    -    phi^dag V (Mdag M)^-1 Mdag dM   (Mdag M)^-1 V^dag  phi
         //    -    phi^dag V (Mdag M)^-1 dMdag M   (Mdag M)^-1 V^dag  phi
         Mpc.MpcDeriv(force,Y,X);              dSdU = dSdU-force;
+	std::cout << GridLogMessage <<" deriv "<<norm2(force)<<std::endl;
         Mpc.MpcDagDeriv(force,X,Y);           dSdU = dSdU-force;
+	std::cout << GridLogMessage <<" deriv "<<norm2(force)<<std::endl;
 
         // FIXME No force contribution from EvenEven assumed here
         // Needs a fix for clover.

Grid/stencil/GeneralLocalStencil.h

@@ -123,7 +123,7 @@ public:
 	  }
 	  if ( permute_slice ) {
 	    int ptype       =grid->PermuteType(d);
-	    uint8_t mask    =grid->Nsimd() >> (ptype + 1);		
+	    uint8_t mask    =0x1<<ptype;
 	    SE._permute    |= mask;
 	  }
 	}	

Grid/stencil/Stencil.h

@@ -339,8 +339,8 @@ public:
   // Vectors that live on the symmetric heap in case of SHMEM
   // These are used; either SHM objects or refs to the above symmetric heap vectors
   // depending on comms target
-  Vector<cobj *> u_simd_send_buf;
+  std::vector<cobj *> u_simd_send_buf;
-  Vector<cobj *> u_simd_recv_buf;
+  std::vector<cobj *> u_simd_recv_buf;
 
   int u_comm_offset;
   int _unified_buffer_size;
@@ -348,7 +348,7 @@ public:
   ////////////////////////////////////////
   // Stencil query
   ////////////////////////////////////////
-#ifdef SHM_FAST_PATH
+#if 1
   inline int SameNode(int point) {
 
     int dimension    = this->_directions[point];
@@ -434,7 +434,6 @@ public:
   ////////////////////////////////////////////////////////////////////////
   void CommunicateBegin(std::vector<std::vector<CommsRequest_t> > &reqs)
   {
-    accelerator_barrier();
     for(int i=0;i<Packets.size();i++){
       _grid->StencilSendToRecvFromBegin(MpiReqs,
 					Packets[i].send_buf,
@@ -666,11 +665,9 @@ public:
     for(int i=0;i<mm.size();i++){
       decompressor::MergeFace(decompress,mm[i]);
     }
-    if ( mm.size() )    acceleratorFenceComputeStream();
     for(int i=0;i<dd.size();i++){
       decompressor::DecompressFace(decompress,dd[i]);
     }
-    if ( dd.size() )    acceleratorFenceComputeStream();
   }
   ////////////////////////////////////////
   // Set up routines
@@ -708,6 +705,7 @@ public:
 	}
       }
     }
+    std::cout << "BuildSurfaceList size is "<<surface_list.size()<<std::endl;
   }
   /// Introduce a block structure and switch off comms on boundaries
   void DirichletBlock(const Coordinate &dirichlet_block)

Grid/threads/Accelerator.h

@@ -526,7 +526,7 @@ inline void acceleratorFreeCpu  (void *ptr){free(ptr);};
 //////////////////////////////////////////////
 
 #ifdef GRID_SYCL
-inline void acceleratorFenceComputeStream(void){ theGridAccelerator->submit_barrier();};
+inline void acceleratorFenceComputeStream(void){ theGridAccelerator->ext_oneapi_submit_barrier(); };
 #else
 // Ordering within a stream guaranteed on Nvidia & AMD
 inline void acceleratorFenceComputeStream(void){ };

HMC/Mobius2p1f_DD_EOFA_96I_mshift.cc

@@ -227,7 +227,7 @@ int main(int argc, char **argv) {
   //  std::vector<Real> hasenbusch({ light_mass, 0.005, 0.0145, 0.045, 0.108, 0.25, 0.51 , pv_mass }); // Updated
   //  std::vector<Real> hasenbusch({ light_mass, 0.0145, 0.045, 0.108, 0.25, 0.51 , 0.75 , pv_mass });
 
-  int SP_iters=10000;
+  int SP_iters=9000;
   
   RationalActionParams OFRp; // Up/down
   OFRp.lo       = 6.0e-5;
@@ -362,12 +362,12 @@ int main(int argc, char **argv) {
 
   // Probably dominates the force - back to EOFA.
   OneFlavourRationalParams SFRp;
-  SFRp.lo       = 0.25;
+  SFRp.lo       = 0.1;
   SFRp.hi       = 25.0;
   SFRp.MaxIter  = 10000;
-  SFRp.tolerance= 1.0e-5;
+  SFRp.tolerance= 1.0e-8;
   SFRp.mdtolerance= 2.0e-4;
-  SFRp.degree   = 8;
+  SFRp.degree   = 12;
   SFRp.precision= 50;
   
   MobiusEOFAFermionD Strange_Op_L (U , *FGrid , *FrbGrid , *GridPtr , *GridRBPtr , strange_mass, strange_mass, pv_mass, 0.0, -1, M5, b, c);

HMC/Mobius2p1f_EOFA_96I_hmc.cc

@@ -244,11 +244,6 @@ int main(int argc, char **argv) {
   Coordinate shm;
 
   GlobalSharedMemory::GetShmDims(mpi,shm);
-  
-  Coordinate CommDim(Nd);
-  for(int d=0;d<Nd;d++) CommDim[d]= (mpi[d]/shm[d])>1 ? 1 : 0;
-
-  Coordinate NonDirichlet(Nd+1,0);
 
   //////////////////////////
   // Fermion Grids
@@ -277,8 +272,6 @@ int main(int argc, char **argv) {
   std::vector<Complex> boundary = {1,1,1,-1};
   FermionAction::ImplParams Params(boundary);
   FermionActionF::ImplParams ParamsF(boundary);
-  Params.dirichlet=NonDirichlet;
-  ParamsF.dirichlet=NonDirichlet;
 
   //  double StoppingCondition = 1e-14;
   //  double MDStoppingCondition = 1e-9;
@@ -305,12 +298,12 @@ int main(int argc, char **argv) {
 
   // Probably dominates the force - back to EOFA.
   OneFlavourRationalParams SFRp;
-  SFRp.lo       = 0.25;
+  SFRp.lo       = 0.1;
-  SFRp.hi       = 25.0;
+  SFRp.hi       = 30.0;
   SFRp.MaxIter  = 10000;
-  SFRp.tolerance= 1.0e-5;
+  SFRp.tolerance= 1.0e-8;
-  SFRp.mdtolerance= 2.0e-4;
+  SFRp.mdtolerance= 2.0e-6;
-  SFRp.degree   = 8;
+  SFRp.degree   = 10;
   SFRp.precision= 50;
   
   MobiusEOFAFermionD Strange_Op_L (U , *FGrid , *FrbGrid , *GridPtr , *GridRBPtr , strange_mass, strange_mass, pv_mass, 0.0, -1, M5, b, c);
@@ -370,19 +363,17 @@ int main(int argc, char **argv) {
   ////////////////////////////////////
   std::vector<Real> light_den;
   std::vector<Real> light_num;
-  std::vector<int> dirichlet_den;
-  std::vector<int> dirichlet_num;
 
   int n_hasenbusch = hasenbusch.size();
-  light_den.push_back(light_mass);  dirichlet_den.push_back(0);
+  light_den.push_back(light_mass); 
   for(int h=0;h<n_hasenbusch;h++){
-    light_den.push_back(hasenbusch[h]); dirichlet_den.push_back(0);
+    light_den.push_back(hasenbusch[h]);
   }
 
   for(int h=0;h<n_hasenbusch;h++){
-    light_num.push_back(hasenbusch[h]); dirichlet_num.push_back(0);
+    light_num.push_back(hasenbusch[h]);
   }
-  light_num.push_back(pv_mass);  dirichlet_num.push_back(0);
+  light_num.push_back(pv_mass);
 
   std::vector<FermionAction *> Numerators;
   std::vector<FermionAction *> Denominators;
@@ -408,9 +399,7 @@ int main(int argc, char **argv) {
     std::cout << GridLogMessage
 	      << " 2f quotient Action ";
     std::cout << "det D("<<light_den[h]<<")";
-    if ( dirichlet_den[h] ) std::cout << "^dirichlet    ";
     std::cout << "/ det D("<<light_num[h]<<")";
-    if ( dirichlet_num[h] ) std::cout << "^dirichlet    ";
     std::cout << std::endl;
 
     FermionAction::ImplParams ParamsNum(boundary);
@@ -418,21 +407,11 @@ int main(int argc, char **argv) {
     FermionActionF::ImplParams ParamsDenF(boundary);
     FermionActionF::ImplParams ParamsNumF(boundary);
     
-    ParamsNum.dirichlet = NonDirichlet;
-    ParamsDen.dirichlet = NonDirichlet;
-
-    ParamsNum.partialDirichlet = 0;
-    ParamsDen.partialDirichlet = 0;
-    
     Numerators.push_back  (new FermionAction(U,*FGrid,*FrbGrid,*GridPtr,*GridRBPtr,light_num[h],M5,b,c, ParamsNum));
     Denominators.push_back(new FermionAction(U,*FGrid,*FrbGrid,*GridPtr,*GridRBPtr,light_den[h],M5,b,c, ParamsDen));
 
-    ParamsDenF.dirichlet = ParamsDen.dirichlet;
-    ParamsDenF.partialDirichlet = ParamsDen.partialDirichlet;
     DenominatorsF.push_back(new FermionActionF(UF,*FGridF,*FrbGridF,*GridPtrF,*GridRBPtrF,light_den[h],M5,b,c, ParamsDenF));
 
-    ParamsNumF.dirichlet = ParamsNum.dirichlet;
-    ParamsNumF.partialDirichlet = ParamsNum.partialDirichlet;
     NumeratorsF.push_back  (new FermionActionF(UF,*FGridF,*FrbGridF,*GridPtrF,*GridRBPtrF,light_num[h],M5,b,c, ParamsNumF));
 
     LinOpD.push_back(new LinearOperatorD(*Denominators[h]));
@@ -469,7 +448,6 @@ int main(int argc, char **argv) {
   // Gauge action
   /////////////////////////////////////////////////////////////
   Level3.push_back(&GaugeAction);
-  //  TheHMC.TheAction.push_back(Level1);
   TheHMC.TheAction.push_back(Level2);
   TheHMC.TheAction.push_back(Level3);
   std::cout << GridLogMessage << " Action complete "<< std::endl;

benchmarks/Benchmark_dwf_fp32.cc

@@ -425,7 +425,7 @@ void Benchmark(int Ls, Coordinate Dirichlet)
 
   err = r_eo-result;
   n2e= norm2(err);
-  std::cout<<GridLogMessage << "norm diff   "<< n2e<< "  Line "<<__LINE__ <<std::endl;
+  std::cout<<GridLogMessage << "norm diff   "<< n2e<<std::endl;
   assert(n2e<1.0e-4);
 
   pickCheckerboard(Even,src_e,err);

documentation/David_notes.txt

@@ -0,0 +1,90 @@
+Branch: develop
+
+Files:
+
+Grid/lattice/PaddedCell.h -- Halo exchange
+tests/Test_general_stencil.cc -- test local off axis stencil addressing
+tests/debug/Test_padded_cell.cc -- test PaddedCell halo exchange and the General local stencil  by computing ALL plaquettes on lattice
+
+Functionality:
+
+-- extend a lattice field:
+Grid/lattice/PaddedCell.h
+
+// Constructor
+  PaddedCell(int _depth,GridCartesian *_grid)
+
+// Expand a field "in" to depth "d"
+  template<class vobj>
+  inline Lattice<vobj> Exchange(Lattice<vobj> &in)
+  
+// Take the "apple core" of in to a smaller local volume
+  template<class vobj>
+  inline Lattice<vobj> Extract(Lattice<vobj> &in)
+
+-- Plaquette test:
+tests/debug/Test_padded_cell.cc
+  /////////////////////////////////////////////////
+  // Create a padded cell of extra padding depth=1
+  /////////////////////////////////////////////////
+  int depth = 1;
+  PaddedCell Ghost(depth,&GRID);
+  LatticeGaugeField Ughost = Ghost.Exchange(Umu);
+
+///// Array for the site plaquette
+  GridBase *GhostGrid = Ughost.Grid();
+  LatticeComplex gplaq(GhostGrid); 
+
+  std::vector<Coordinate> shifts;
+  for(int mu=0;mu<Nd;mu++){
+    for(int nu=mu+1;nu<Nd;nu++){
+  
+      //    Umu(x) Unu(x+mu) Umu^dag(x+nu) Unu^dag(x)
+      Coordinate shift_0(Nd,0);
+      Coordinate shift_mu(Nd,0); shift_mu[mu]=1;
+      Coordinate shift_nu(Nd,0); shift_nu[nu]=1;
+      shifts.push_back(shift_0);
+      shifts.push_back(shift_mu);
+      shifts.push_back(shift_nu);
+      shifts.push_back(shift_0);
+    }
+  }
+  GeneralLocalStencil gStencil(GhostGrid,shifts);
+
+  gplaq=Zero();
+  {
+    autoView( gp_v , gplaq, CpuWrite);
+    autoView( t_v , trplaq, CpuRead);
+    autoView( U_v , Ughost, CpuRead);
+    for(int ss=0;ss<gp_v.size();ss++){
+      int s=0;
+      for(int mu=0;mu<Nd;mu++){
+	for(int nu=mu+1;nu<Nd;nu++){
+
+	  auto SE0 = gStencil.GetEntry(s+0,ss);
+	  auto SE1 = gStencil.GetEntry(s+1,ss);
+	  auto SE2 = gStencil.GetEntry(s+2,ss);
+	  auto SE3 = gStencil.GetEntry(s+3,ss);
+	
+	  int o0 = SE0->_offset;
+	  int o1 = SE1->_offset;
+	  int o2 = SE2->_offset;
+	  int o3 = SE3->_offset;
+	  
+	  auto U0 = U_v[o0](mu);
+	  auto U1 = U_v[o1](nu);
+	  auto U2 = adj(U_v[o2](mu));
+	  auto U3 = adj(U_v[o3](nu));
+
+	  gpermute(U0,SE0->_permute);
+	  gpermute(U1,SE1->_permute);
+	  gpermute(U2,SE2->_permute);
+	  gpermute(U3,SE3->_permute);
+	  
+	  gp_v[ss]() =gp_v[ss]() + trace( U0*U1*U2*U3 );
+	  s=s+4;
+	}
+      }
+    }
+  }
+  cplaq = Ghost.Extract(gplaq);

examples/socket_grid.cc

@@ -0,0 +1,133 @@
+#include <sys/socket.h>
+#include <sys/un.h>
+#include <unistd.h>
+#include <stdio.h>
+#include <err.h>
+#include <fcntl.h>
+#include <assert.h>
+#include <string.h>
+#include <stdlib.h>
+
+static int sock;
+static const char *sock_path_fmt = "/tmp/GridUnixSocket.%d";
+static char sock_path[256];
+
+class UnixSockets {
+public:
+  static void Open(int rank)
+  {
+    int errnum;
+
+    sock = socket(AF_UNIX, SOCK_DGRAM, 0);  assert(sock>0);
+    printf("allocated socket %d\n",sock);
+
+    struct sockaddr_un sa_un = { 0 };
+    sa_un.sun_family = AF_UNIX;
+    snprintf(sa_un.sun_path, sizeof(sa_un.sun_path),sock_path_fmt,rank);
+    unlink(sa_un.sun_path);
+    if (bind(sock, (struct sockaddr *)&sa_un, sizeof(sa_un))) {
+      perror("bind failure");
+      exit(EXIT_FAILURE);
+    }
+    printf("bound socket %d to %s\n",sock,sa_un.sun_path);
+  }
+
+  static int RecvFileDescriptor(void)
+  {
+    int n;
+    int fd;
+    char buf[1];
+    struct iovec iov;
+    struct msghdr msg;
+    struct cmsghdr *cmsg;
+    char cms[CMSG_SPACE(sizeof(int))];
+
+    iov.iov_base = buf;
+    iov.iov_len = 1;
+
+    memset(&msg, 0, sizeof msg);
+    msg.msg_name = 0;
+    msg.msg_namelen = 0;
+    msg.msg_iov = &iov;
+    msg.msg_iovlen = 1;
+
+    msg.msg_control = (caddr_t)cms;
+    msg.msg_controllen = sizeof cms;
+
+    if((n=recvmsg(sock, &msg, 0)) < 0) {
+      perror("recvmsg failed");
+      return -1;
+    }
+    if(n == 0){
+      perror("recvmsg returned 0");
+      return -1;
+    }
+    cmsg = CMSG_FIRSTHDR(&msg);
+    memmove(&fd, CMSG_DATA(cmsg), sizeof(int));
+    printf("received fd %d from socket %d\n",fd,sock);
+    return fd;
+  }
+
+  static void SendFileDescriptor(int fildes,int xmit_to_rank)
+  {
+    struct msghdr msg;
+    struct iovec iov;
+    struct cmsghdr *cmsg = NULL;
+    char ctrl[CMSG_SPACE(sizeof(int))];
+    char data = ' ';
+
+    memset(&msg, 0, sizeof(struct msghdr));
+    memset(ctrl, 0, CMSG_SPACE(sizeof(int)));
+    iov.iov_base = &data;
+    iov.iov_len = sizeof(data);
+    
+    sprintf(sock_path,sock_path_fmt,xmit_to_rank);
+    printf("sending FD %d over socket %d to rank %d AF_UNIX path %s\n",fildes,sock,xmit_to_rank,sock_path);fflush(stdout);
+    
+    struct sockaddr_un sa_un = { 0 };
+    sa_un.sun_family = AF_UNIX;
+    snprintf(sa_un.sun_path, sizeof(sa_un.sun_path),sock_path_fmt,xmit_to_rank);
+
+    msg.msg_name = (void *)&sa_un;
+    msg.msg_namelen = sizeof(sa_un);
+    msg.msg_iov = &iov;
+    msg.msg_iovlen = 1;
+    msg.msg_controllen =  CMSG_SPACE(sizeof(int));
+    msg.msg_control = ctrl;
+
+    cmsg = CMSG_FIRSTHDR(&msg);
+    cmsg->cmsg_level = SOL_SOCKET;
+    cmsg->cmsg_type = SCM_RIGHTS;
+    cmsg->cmsg_len = CMSG_LEN(sizeof(int));
+
+    *((int *) CMSG_DATA(cmsg)) = fildes;
+
+    if ( sendmsg(sock, &msg, 0) == -1 ) perror("sendmsg failed");
+  };
+};
+
+int main(int argc, char **argv)
+{
+  int me = fork()?0:1;
+  
+  UnixSockets::Open(me);
+  
+  // need MPI barrier
+  sleep(10);
+  const char * message = "Hello, World\n";
+  if( me ) {
+    int fd = open("foo",O_RDWR|O_CREAT,0666);
+    if ( fd < 0 ) {
+      perror("failed to open file");
+      exit(EXIT_FAILURE);
+    }
+    // rank 1 sends ot rank 0
+    UnixSockets::SendFileDescriptor(fd,0);
+    close(fd);
+  } else {
+    // rank 0 sends receives frmo rank 1
+    int fd = UnixSockets::RecvFileDescriptor();
+    write(fd,(const void *)message,strlen(message));
+    close(fd);
+  }
+}

systems/PVC/setup.sh

@@ -3,8 +3,14 @@ export https_proxy=http://proxy-chain.intel.com:911
 export LD_LIBRARY_PATH=$HOME/prereqs/lib/:$LD_LIBRARY_PATH
 
 module load intel-release
-source /opt/intel/oneapi/PVC_setup.sh
+module load intel-comp-rt/embargo-ci-neo
+
+#source /opt/intel/oneapi/PVC_setup.sh
 #source /opt/intel/oneapi/ATS_setup.sh
+#module load intel-nightly/20230331
+#module load intel-comp-rt/ci-neo-master/026093
+
+#module load intel/mpich
 module load intel/mpich/pvc45.3
 export PATH=~/ATS/pti-gpu/tools/onetrace/:$PATH
 

systems/mac-arm/config-command-mpi

@@ -1,2 +1,2 @@
-CXX=mpicxx-openmpi-mp CXXFLAGS=-I/opt/local/include/ LDFLAGS=-L/opt/local/lib/ ../../configure --enable-simd=GEN --enable-debug --enable-comms=mpi --enable-unified=yes
+BREW=/opt/local/
-
+MPICXX=mpicxx CXX=c++-12 ../../configure --enable-simd=GEN --enable-comms=mpi-auto --enable-unified=yes --prefix $HOME/QCD/GridInstallOpt --with-lime=/Users/peterboyle/QCD/SciDAC/install/ --with-openssl=$BREW

tests/Test_general_stencil.cc

@@ -115,6 +115,7 @@ int main(int argc, char ** argv)
 	  if (SE->_permute & 0x2 ) { permute(check[i],tmp,1); tmp=check[i];}
 	  if (SE->_permute & 0x4 ) { permute(check[i],tmp,2); tmp=check[i];}
 	  if (SE->_permute & 0x8 ) { permute(check[i],tmp,3); tmp=check[i];}
+	  //	  std::cout<<GridLogMessage<<"stencil["<<i<<"] "<< check[i]<< " perm "<<(uint32_t)SE->_permute <<std::endl;
 	}
 
 	Real nrmC = norm2(Check);
@@ -138,18 +139,17 @@ int main(int argc, char ** argv)
 	  ddiff = check -bar;
 	  diff =norm2(ddiff);
 	  if ( diff > 0){
-	    std::cout <<"Coor (" << coor[0]<<","<<coor[1]<<","<<coor[2]<<","<<coor[3]
+	    std::cout <<"Diff at Coor (" << coor[0]<<","<<coor[1]<<","<<coor[2]<<","<<coor[3]
-		      <<") " <<check<<" vs "<<bar<<std::endl;
+		      <<") stencil " <<check<<" vs cshift "<<bar<<std::endl;
 	  }
 
-
 	}}}}
 
 	if (nrm > 1.0e-4) {
 	  autoView( check , Check, CpuRead);
 	  autoView(   bar ,   Bar, CpuRead);
 	  for(int i=0;i<check.size();i++){
-	    std::cout << i<<" Check "<<check[i]<< "\n"<<i<<" Bar "<<bar[i]<<std::endl;
+	    std::cout << i<<" ERROR Check \n"<<check[i]<< "\n"<<i<<" Bar \n"<<bar[i]<<std::endl;
 	  }
 	}
 	if (nrm > 1.0e-4) exit(-1);

tests/core/Test_lie_generators.cc

@@ -63,7 +63,9 @@ int main(int argc, char** argv) {
   std::cout << "Dimension of adjoint representation: "<< SU2Adjoint::Dimension << std::endl;
 
   // guard as this code fails to compile for Nc != 3
-#if (Nc == 3)
+#if 1
+
+  std::cout << " Printing  Adjoint Generators"<< std::endl;
     
   SU2Adjoint::printGenerators();
   SU2::testGenerators();
@@ -148,10 +150,33 @@ int main(int argc, char** argv) {
     typename AdjointRep<Nc>::LatticeMatrix Vrmu = peekLorentz(Vr,mu);
     pokeLorentz(UrVr,Urmu*Vrmu, mu);
   }
-    
+
+  typedef typename SU_Adjoint<Nc>::AMatrix AdjointMatrix;
   typename AdjointRep<Nc>::LatticeField Diff_check = UVr - UrVr;
   std::cout << GridLogMessage << "Group structure SU("<<Nc<<") check difference (Adjoint representation) : " << norm2(Diff_check) << std::endl;
-    
+
+  std::cout << GridLogMessage << "****************************************** " << std::endl;
+  std::cout << GridLogMessage << " MAP BETWEEN FUNDAMENTAL AND ADJOINT CHECK " << std::endl;
+  std::cout << GridLogMessage << "****************************************** " << std::endl;
+  for(int a=0;a<Nc*Nc-1;a++){
+  for(int b=0;b<Nc*Nc-1;b++){
+  for(int c=0;c<Nc*Nc-1;c++){
+    ColourMatrix Ta;
+    ColourMatrix Tb;
+    ColourMatrix Tc;
+    SU3::generator(a, Ta);
+    SU3::generator(b, Tb);
+    SU3::generator(c, Tc);
+    AdjointMatrix TRa;
+    SU3Adjoint::generator(a,TRa);
+    Complex tr1 = trace ( Tc * ( Ta*Tb-Tb*Ta)); // i/2 fabc
+    Complex tr2 = TRa()()(b,c) * Complex(0,1);
+    std::cout << " 2 Tr( Tc[Ta,Tb]) " << 2.0*tr1<<std::endl;
+    std::cout << " - TRa_bc " << tr2<<std::endl;
+    assert(abs( (2.0*tr1-tr2) ) < 1.0e-7);
+    std::cout << "------------------"<<std::endl;
+  }}}
+  
   // Check correspondence of algebra and group transformations
   // Create a random vector
   SU3::LatticeAlgebraVector h_adj(grid);

tests/debug/Test_padded_cell.cc

@@ -0,0 +1,184 @@
+    /*************************************************************************************
+
+    Grid physics library, www.github.com/paboyle/Grid 
+
+    Source file: ./tests/Test_padded_cell.cc
+
+    Copyright (C) 2015
+
+Author: Peter Boyle <paboyle@ph.ed.ac.uk>
+
+    This program is free software; you can redistribute it and/or modify
+    it under the terms of the GNU General Public License as published by
+    the Free Software Foundation; either version 2 of the License, or
+    (at your option) any later version.
+
+    This program is distributed in the hope that it will be useful,
+    but WITHOUT ANY WARRANTY; without even the implied warranty of
+    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+    GNU General Public License for more details.
+
+    You should have received a copy of the GNU General Public License along
+    with this program; if not, write to the Free Software Foundation, Inc.,
+    51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
+
+    See the full license in the file "LICENSE" in the top level distribution directory
+    *************************************************************************************/
+    /*  END LEGAL */
+#include <Grid/Grid.h>
+#include <Grid/lattice/PaddedCell.h>
+#include <Grid/stencil/GeneralLocalStencil.h>
+
+using namespace std;
+using namespace Grid;
+
+template<class vobj> void gpermute(vobj & inout,int perm){
+  vobj tmp=inout;
+  if (perm & 0x1 ) { permute(inout,tmp,0); tmp=inout;}
+  if (perm & 0x2 ) { permute(inout,tmp,1); tmp=inout;}
+  if (perm & 0x4 ) { permute(inout,tmp,2); tmp=inout;}
+  if (perm & 0x8 ) { permute(inout,tmp,3); tmp=inout;}
+}
+  
+int main (int argc, char ** argv)
+{
+  Grid_init(&argc,&argv);
+
+  Coordinate latt_size  = GridDefaultLatt();
+  Coordinate simd_layout= GridDefaultSimd(Nd,vComplexD::Nsimd());
+  Coordinate mpi_layout = GridDefaultMpi();
+  std::cout << " mpi "<<mpi_layout<<std::endl;
+  std::cout << " simd "<<simd_layout<<std::endl;
+  std::cout << " latt "<<latt_size<<std::endl;
+  GridCartesian GRID(latt_size,simd_layout,mpi_layout);
+
+  GridParallelRNG   pRNG(&GRID);
+  pRNG.SeedFixedIntegers(std::vector<int>({45,12,81,9}));
+  LatticeGaugeField Umu(&GRID);
+
+  SU<Nc>::HotConfiguration(pRNG,Umu);
+
+  Real plaq=WilsonLoops<PeriodicGimplR>::avgPlaquette(Umu);
+  LatticeComplex trplaq(&GRID);
+
+  std::vector<LatticeColourMatrix> U(Nd, Umu.Grid());
+  for (int mu = 0; mu < Nd; mu++) {
+    U[mu] = PeekIndex<LorentzIndex>(Umu, mu);
+  }
+
+  std::cout << GridLogMessage << " Average plaquette "<<plaq<<std::endl;
+
+  LatticeComplex cplaq(&GRID); cplaq=Zero();
+
+  /////////////////////////////////////////////////
+  // Create a padded cell of extra padding depth=1
+  /////////////////////////////////////////////////
+  int depth = 1;
+  PaddedCell Ghost(depth,&GRID);
+  LatticeGaugeField Ughost = Ghost.Exchange(Umu);
+
+  ///////////////////////////////////////////////////////////////////
+  // Temporary debug Hack for single rank sim:
+  // Check the contents of the cell are periodcally replicated
+  // In future ONLY pad those dimensions that are not local to node
+  ///////////////////////////////////////////////////////////////////
+#if 0
+  {
+    double diff=0;
+    double n=0;
+  {
+    autoView( Ug_v , Ughost, CpuRead);
+    autoView( Ul_v , Umu   , CpuRead);
+  for(int x=0;x<latt_size[0]+2;x++){
+  for(int y=0;y<latt_size[1]+2;y++){
+  for(int z=0;z<latt_size[2]+2;z++){
+  for(int t=0;t<latt_size[3]+2;t++){
+    int lx=(x-1+latt_size[0])%latt_size[0];
+    int ly=(y-1+latt_size[1])%latt_size[1];
+    int lz=(z-1+latt_size[2])%latt_size[2];
+    int lt=(t-1+latt_size[3])%latt_size[3];
+    Coordinate gcoor({x,y,z,t});
+    Coordinate lcoor({lx,ly,lz,lt});
+    LorentzColourMatrix g;
+    LorentzColourMatrix l;
+    peekLocalSite(g,Ug_v,gcoor);
+    peekLocalSite(l,Ul_v,lcoor);
+    g=g-l;
+    assert(norm2(g)==0);
+    diff = diff + norm2(g);
+    n = n + norm2(l);
+  }}}}
+  }
+  std::cout << "padded field check diff "<< diff <<" / "<< n<<std::endl;
+  std::cout << norm2(Ughost)<< " " << norm2(Umu)<<std::endl;
+  }
+#endif
+
+  ///// Array for the site plaquette
+  GridBase *GhostGrid = Ughost.Grid();
+  LatticeComplex gplaq(GhostGrid); 
+  
+  std::vector<Coordinate> shifts;
+  for(int mu=0;mu<Nd;mu++){
+    for(int nu=mu+1;nu<Nd;nu++){
+  
+      //    Umu(x) Unu(x+mu) Umu^dag(x+nu) Unu^dag(x)
+      Coordinate shift_0(Nd,0);
+      Coordinate shift_mu(Nd,0); shift_mu[mu]=1;
+      Coordinate shift_nu(Nd,0); shift_nu[nu]=1;
+      shifts.push_back(shift_0);
+      shifts.push_back(shift_mu);
+      shifts.push_back(shift_nu);
+      shifts.push_back(shift_0);
+    }
+  }
+  GeneralLocalStencil gStencil(GhostGrid,shifts);
+
+  gplaq=Zero();
+  {
+    autoView( gp_v , gplaq, CpuWrite);
+    autoView( t_v , trplaq, CpuRead);
+    autoView( U_v , Ughost, CpuRead);
+    for(int ss=0;ss<gp_v.size();ss++){
+      int s=0;
+      for(int mu=0;mu<Nd;mu++){
+	for(int nu=mu+1;nu<Nd;nu++){
+
+	  auto SE0 = gStencil.GetEntry(s+0,ss);
+	  auto SE1 = gStencil.GetEntry(s+1,ss);
+	  auto SE2 = gStencil.GetEntry(s+2,ss);
+	  auto SE3 = gStencil.GetEntry(s+3,ss);
+	
+	  int o0 = SE0->_offset;
+	  int o1 = SE1->_offset;
+	  int o2 = SE2->_offset;
+	  int o3 = SE3->_offset;
+	  
+	  auto U0 = U_v[o0](mu);
+	  auto U1 = U_v[o1](nu);
+	  auto U2 = adj(U_v[o2](mu));
+	  auto U3 = adj(U_v[o3](nu));
+
+	  gpermute(U0,SE0->_permute);
+	  gpermute(U1,SE1->_permute);
+	  gpermute(U2,SE2->_permute);
+	  gpermute(U3,SE3->_permute);
+	  
+	  gp_v[ss]() =gp_v[ss]() + trace( U0*U1*U2*U3 );
+	  s=s+4;
+	}
+      }
+    }
+  }
+  cplaq = Ghost.Extract(gplaq);
+  RealD vol = cplaq.Grid()->gSites();
+  RealD faces = (Nd * (Nd-1))/2;
+  auto p = TensorRemove(sum(cplaq));
+  auto result = p.real()/vol/faces/Nc;
+
+  std::cout << GridLogMessage << " Average plaquette via padded cell "<<result<<std::endl;
+  std::cout << GridLogMessage << " Diff "<<result-plaq<<std::endl;
+  
+  assert(fabs(result-plaq)<1.0e-8);
+  Grid_finalize();
+}

tests/forces/Test_double_ratio.cc

@@ -476,7 +476,9 @@ int main (int argc, char ** argv)
   //  ForceTest<GimplTypesR>(BdyNf2eo,U,DDHMCFilter);
 
   //////////////////// One flavour boundary det  ////////////////////
+  /*
   RationalActionParams OFRp; // Up/down
+  int SP_iters = 3000;
   OFRp.lo       = 6.0e-5;
   OFRp.hi       = 90.0;
   OFRp.inv_pow  = 2;
@@ -489,7 +491,7 @@ int main (int argc, char ** argv)
   //  OFRp.degree   = 16;
   OFRp.precision= 80;
   OFRp.BoundsCheckFreq=0;
-  /*
+  */
   OneFlavourRationalParams OFRp; // Up/down
   OFRp.lo       = 4.0e-5;
   OFRp.hi       = 90.0;
@@ -499,7 +501,6 @@ int main (int argc, char ** argv)
   OFRp.degree   = 18;
   OFRp.precision= 80;
   OFRp.BoundsCheckFreq=0;
-  */
   std::vector<RealD> ActionTolByPole({
       1.0e-7,1.0e-8,1.0e-8,1.0e-8,
       1.0e-8,1.0e-8,1.0e-8,1.0e-8,