/************************************************************************************* Grid physics library, www.github.com/paboyle/Grid Source file: ./lib/parallelIO/NerscIO.h Copyright (C) 2015 Author: Matt Spraggs Author: Peter Boyle Author: paboyle This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version. This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. You should have received a copy of the GNU General Public License along with this program; if not, write to the Free Software Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. See the full license in the file "LICENSE" in the top level distribution directory *************************************************************************************/ /* END LEGAL */ #ifndef GRID_NERSC_IO_H #define GRID_NERSC_IO_H NAMESPACE_BEGIN(Grid); using namespace Grid; //////////////////////////////////////////////////////////////////////////////// // Write and read from fstream; comput header offset for payload //////////////////////////////////////////////////////////////////////////////// class NerscIO : public BinaryIO { public: static inline void truncate(std::string file){ std::ofstream fout(file,std::ios::out); } static inline unsigned int writeHeader(FieldMetaData &field,std::string file) { std::ofstream fout(file,std::ios::out|std::ios::in); fout.seekp(0,std::ios::beg); dump_meta_data(field, fout); field.data_start = fout.tellp(); return field.data_start; } // for the header-reader static inline int readHeader(std::string file,GridBase *grid, FieldMetaData &field) { int offset=0; std::map header; std::string line; ////////////////////////////////////////////////// // read the header ////////////////////////////////////////////////// std::ifstream fin(file); getline(fin,line); // read one line and insist is removeWhitespace(line); std::cout << GridLogMessage << "* " << line << std::endl; assert(line==std::string("BEGIN_HEADER")); do { getline(fin,line); // read one line std::cout << GridLogMessage << "* "<0) { std::string key=line.substr(0,eq); std::string val=line.substr(eq+1); removeWhitespace(key); removeWhitespace(val); header[key] = val; } } while( line.find("END_HEADER") == std::string::npos ); field.data_start = fin.tellg(); ////////////////////////////////////////////////// // chomp the values ////////////////////////////////////////////////// field.hdr_version = header["HDR_VERSION"]; field.data_type = header["DATATYPE"]; field.storage_format = header["STORAGE_FORMAT"]; field.dimension[0] = std::stol(header["DIMENSION_1"]); field.dimension[1] = std::stol(header["DIMENSION_2"]); field.dimension[2] = std::stol(header["DIMENSION_3"]); field.dimension[3] = std::stol(header["DIMENSION_4"]); assert(grid->_ndimension == 4); for(int d=0;d<4;d++){ assert(grid->_fdimensions[d]==field.dimension[d]); } field.link_trace = std::stod(header["LINK_TRACE"]); field.plaquette = std::stod(header["PLAQUETTE"]); field.boundary[0] = header["BOUNDARY_1"]; field.boundary[1] = header["BOUNDARY_2"]; field.boundary[2] = header["BOUNDARY_3"]; field.boundary[3] = header["BOUNDARY_4"]; field.checksum = std::stoul(header["CHECKSUM"],0,16); field.ensemble_id = header["ENSEMBLE_ID"]; field.ensemble_label = header["ENSEMBLE_LABEL"]; field.sequence_number = std::stol(header["SEQUENCE_NUMBER"]); field.creator = header["CREATOR"]; field.creator_hardware = header["CREATOR_HARDWARE"]; field.creation_date = header["CREATION_DATE"]; field.archive_date = header["ARCHIVE_DATE"]; field.floating_point = header["FLOATING_POINT"]; return field.data_start; } ///////////////////////////////////////////////////////////////////////////////////////////////////////////////////// // Now the meat: the object readers ///////////////////////////////////////////////////////////////////////////////////////////////////////////////////// template static inline void readConfiguration(Lattice > &Umu, FieldMetaData& header, std::string file) { typedef Lattice > GaugeField; GridBase *grid = Umu._grid; int offset = readHeader(file,Umu._grid,header); FieldMetaData clone(header); std::string format(header.floating_point); int ieee32big = (format == std::string("IEEE32BIG")); int ieee32 = (format == std::string("IEEE32")); int ieee64big = (format == std::string("IEEE64BIG")); int ieee64 = (format == std::string("IEEE64")); uint32_t nersc_csum,scidac_csuma,scidac_csumb; // depending on datatype, set up munger; // munger is a function of if ( header.data_type == std::string("4D_SU3_GAUGE") ) { if ( ieee32 || ieee32big ) { BinaryIO::readLatticeObject, LorentzColour2x3F> (Umu,file,Gauge3x2munger(), offset,format, nersc_csum,scidac_csuma,scidac_csumb); } if ( ieee64 || ieee64big ) { BinaryIO::readLatticeObject, LorentzColour2x3D> (Umu,file,Gauge3x2munger(),offset,format, nersc_csum,scidac_csuma,scidac_csumb); } } else if ( header.data_type == std::string("4D_SU3_GAUGE_3x3") ) { if ( ieee32 || ieee32big ) { BinaryIO::readLatticeObject,LorentzColourMatrixF> (Umu,file,GaugeSimpleMunger(),offset,format, nersc_csum,scidac_csuma,scidac_csumb); } if ( ieee64 || ieee64big ) { BinaryIO::readLatticeObject,LorentzColourMatrixD> (Umu,file,GaugeSimpleMunger(),offset,format, nersc_csum,scidac_csuma,scidac_csumb); } } else { assert(0); } GaugeStatistics(Umu,clone); std::cout<= 1.0e-5 ) { std::cout << " Plaquette mismatch "< static inline void writeConfiguration(Lattice > &Umu, std::string file, int two_row, int bits32) { typedef Lattice > GaugeField; typedef iLorentzColourMatrix vobj; typedef typename vobj::scalar_object sobj; FieldMetaData header; /////////////////////////////////////////// // Following should become arguments /////////////////////////////////////////// header.sequence_number = 1; header.ensemble_id = "UKQCD"; header.ensemble_label = "DWF"; typedef LorentzColourMatrixD fobj3D; typedef LorentzColour2x3D fobj2D; GridBase *grid = Umu._grid; GridMetaData(grid,header); assert(header.nd==4); GaugeStatistics(Umu,header); MachineCharacteristics(header); int offset; truncate(file); // Sod it -- always write 3x3 double header.floating_point = std::string("IEEE64BIG"); header.data_type = std::string("4D_SU3_GAUGE_3x3"); GaugeSimpleUnmunger munge; offset = writeHeader(header,file); uint32_t nersc_csum,scidac_csuma,scidac_csumb; BinaryIO::writeLatticeObject(Umu,file,munge,offset,header.floating_point, nersc_csum,scidac_csuma,scidac_csumb); header.checksum = nersc_csum; writeHeader(header,file); std::cout< uint32_t nersc_csum,scidac_csuma,scidac_csumb; BinaryIO::readRNG(serial,parallel,file,offset,nersc_csum,scidac_csuma,scidac_csumb); if ( nersc_csum != header.checksum ) { std::cerr << "checksum mismatch "<