/************************************************************************************* Grid physics library, www.github.com/paboyle/Grid Source file: ./lib/parallelIO/NerscIO.h Copyright (C) 2015 Author: Matt Spraggs Author: Peter Boyle Author: paboyle Author: Jamie Hudspith This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version. This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. You should have received a copy of the GNU General Public License along with this program; if not, write to the Free Software Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. See the full license in the file "LICENSE" in the top level distribution directory *************************************************************************************/ /* END LEGAL */ #ifndef GRID_NERSC_IO_H #define GRID_NERSC_IO_H #include NAMESPACE_BEGIN(Grid); using namespace Grid; //////////////////////////////////////////////////////////////////////////////// // Write and read from fstream; comput header offset for payload //////////////////////////////////////////////////////////////////////////////// class NerscIO : public BinaryIO { public: typedef Lattice GaugeField; // Enable/disable exiting if the plaquette in the header does not match the value computed (default true) static bool & exitOnReadPlaquetteMismatch(){ static bool v=true; return v; } static inline void truncate(std::string file){ std::ofstream fout(file,std::ios::out); } static inline unsigned int writeHeader(FieldMetaData &field,std::string file) { std::ofstream fout(file,std::ios::out|std::ios::in); fout.seekp(0,std::ios::beg); dump_meta_data(field, fout); field.data_start = fout.tellp(); return field.data_start; } // for the header-reader static inline int readHeader(std::string file,GridBase *grid, FieldMetaData &field) { std::map header; std::string line; ////////////////////////////////////////////////// // read the header ////////////////////////////////////////////////// std::ifstream fin(file); getline(fin,line); // read one line and insist is removeWhitespace(line); std::cout << GridLogMessage << "* " << line << std::endl; GRID_ASSERT(line==std::string("BEGIN_HEADER")); do { getline(fin,line); // read one line std::cout << GridLogMessage << "* "<0) { std::string key=line.substr(0,eq); std::string val=line.substr(eq+1); removeWhitespace(key); removeWhitespace(val); header[key] = val; } } while( line.find("END_HEADER") == std::string::npos ); field.data_start = fin.tellg(); ////////////////////////////////////////////////// // chomp the values ////////////////////////////////////////////////// field.hdr_version = header["HDR_VERSION"]; field.data_type = header["DATATYPE"]; field.storage_format = header["STORAGE_FORMAT"]; field.dimension[0] = std::stol(header["DIMENSION_1"]); field.dimension[1] = std::stol(header["DIMENSION_2"]); field.dimension[2] = std::stol(header["DIMENSION_3"]); field.dimension[3] = std::stol(header["DIMENSION_4"]); GRID_ASSERT(grid->_ndimension == 4); for(int d=0;d<4;d++){ GRID_ASSERT(grid->_fdimensions[d]==field.dimension[d]); } field.link_trace = std::stod(header["LINK_TRACE"]); field.plaquette = std::stod(header["PLAQUETTE"]); field.boundary[0] = header["BOUNDARY_1"]; field.boundary[1] = header["BOUNDARY_2"]; field.boundary[2] = header["BOUNDARY_3"]; field.boundary[3] = header["BOUNDARY_4"]; field.checksum = std::stoul(header["CHECKSUM"],0,16); field.ensemble_id = header["ENSEMBLE_ID"]; field.ensemble_label = header["ENSEMBLE_LABEL"]; field.sequence_number = std::stol(header["SEQUENCE_NUMBER"]); field.creator = header["CREATOR"]; field.creator_hardware = header["CREATOR_HARDWARE"]; field.creation_date = header["CREATION_DATE"]; field.archive_date = header["ARCHIVE_DATE"]; field.floating_point = header["FLOATING_POINT"]; return field.data_start; } ///////////////////////////////////////////////////////////////////////////////////////////////////////////////////// // Now the meat: the object readers ///////////////////////////////////////////////////////////////////////////////////////////////////////////////////// template static inline void readConfiguration(GaugeField &Umu, FieldMetaData& header, std::string file, GaugeStats GaugeStatisticsCalculator=GaugeStats()) { GridBase *grid = Umu.Grid(); uint64_t offset = readHeader(file,Umu.Grid(),header); FieldMetaData clone(header); std::string format(header.floating_point); const int ieee32big = (format == std::string("IEEE32BIG")); const int ieee32 = (format == std::string("IEEE32")); const int ieee64big = (format == std::string("IEEE64BIG")); const int ieee64 = (format == std::string("IEEE64") || \ format == std::string("IEEE64LITTLE")); uint32_t nersc_csum,scidac_csuma,scidac_csumb; // depending on datatype, set up munger; // munger is a function of const std::string stNC = std::to_string( Nc ) ; if ( header.data_type == std::string("4D_SU"+stNC+"_GAUGE") ) { if ( ieee32 || ieee32big ) { BinaryIO::readLatticeObject (Umu,file,Gauge3x2munger(), offset,format, nersc_csum,scidac_csuma,scidac_csumb); } if ( ieee64 || ieee64big ) { BinaryIO::readLatticeObject (Umu,file,Gauge3x2munger(),offset,format, nersc_csum,scidac_csuma,scidac_csumb); } } else if ( header.data_type == std::string("4D_SU"+stNC+"_GAUGE_"+stNC+"x"+stNC) ) { if ( ieee32 || ieee32big ) { BinaryIO::readLatticeObject (Umu,file,GaugeSimpleMunger(),offset,format, nersc_csum,scidac_csuma,scidac_csumb); } if ( ieee64 || ieee64big ) { BinaryIO::readLatticeObject (Umu,file,GaugeSimpleMunger(),offset,format, nersc_csum,scidac_csuma,scidac_csumb); } } else { GRID_ASSERT(0); } GaugeStats Stats; Stats(Umu,clone); std::cout<= 1.0e-5 ) { std::cout << " Plaquette mismatch "< static inline void writeConfiguration(Lattice &Umu, std::string file, std::string ens_label = std::string("DWF"), std::string ens_id = std::string("UKQCD"), unsigned int sequence_number = 1) { writeConfiguration(Umu,file,0,1,ens_label,ens_id,sequence_number); } template static inline void writeConfiguration(Lattice &Umu, std::string file, int two_row, int bits32, std::string ens_label = std::string("DWF"), std::string ens_id = std::string("UKQCD"), unsigned int sequence_number = 1) { typedef vLorentzColourMatrixD vobj; typedef typename vobj::scalar_object sobj; FieldMetaData header; header.sequence_number = sequence_number; header.ensemble_id = ens_id; header.ensemble_label = ens_label; header.hdr_version = "1.0" ; typedef LorentzColourMatrixD fobj3D; typedef LorentzColour2x3D fobj2D; GridBase *grid = Umu.Grid(); GridMetaData(grid,header); GRID_ASSERT(header.nd==4); GaugeStats Stats; Stats(Umu,header); MachineCharacteristics(header); uint64_t offset; // Sod it -- always write NcxNc double header.floating_point = std::string("IEEE64BIG"); const std::string stNC = std::to_string( Nc ) ; if( two_row ) { header.data_type = std::string("4D_SU" + stNC + "_GAUGE" ); } else { header.data_type = std::string("4D_SU" + stNC + "_GAUGE_" + stNC + "x" + stNC ); } if ( grid->IsBoss() ) { truncate(file); offset = writeHeader(header,file); } grid->Broadcast(0,(void *)&offset,sizeof(offset)); uint32_t nersc_csum,scidac_csuma,scidac_csumb; if( two_row ) { Gauge3x2unmunger munge; BinaryIO::writeLatticeObject(Umu,file,munge,offset,header.floating_point, nersc_csum,scidac_csuma,scidac_csumb); } else { GaugeSimpleUnmunger munge; BinaryIO::writeLatticeObject(Umu,file,munge,offset,header.floating_point, nersc_csum,scidac_csuma,scidac_csumb); } header.checksum = nersc_csum; if ( grid->IsBoss() ) { writeHeader(header,file); } std::cout<IsBoss() ) { truncate(file); offset = writeHeader(header,file); } grid->Broadcast(0,(void *)&offset,sizeof(offset)); uint32_t nersc_csum,scidac_csuma,scidac_csumb; BinaryIO::writeRNG(serial,parallel,file,offset,nersc_csum,scidac_csuma,scidac_csumb); header.checksum = nersc_csum; if ( grid->IsBoss() ) { offset = writeHeader(header,file); } std::cout< uint32_t nersc_csum,scidac_csuma,scidac_csumb; BinaryIO::readRNG(serial,parallel,file,offset,nersc_csum,scidac_csuma,scidac_csumb); if ( nersc_csum != header.checksum ) { std::cerr << "checksum mismatch "<