#!/bin/bash -l #SBATCH --job-name=runIO #SBATCH --nodes=4 #SBATCH --ntasks-per-node=8 #SBATCH --cpus-per-task=7 #SBATCH --gpus-per-node=8 #SBATCH --time=02:00:00 #SBATCH --account=phy157_dwf #SBATCH --gpu-bind=none #SBATCH --exclusive #SBATCH --mem=0 #SBATCH -q debug cat << EOF > select_gpu #!/bin/bash export GPU_MAP=(0 1 2 3 7 6 5 4) export NUMA_MAP=(3 3 1 1 2 2 0 0) export GPU=\${GPU_MAP[\$SLURM_LOCALID]} export NUMA=\${NUMA_MAP[\$SLURM_LOCALID]} unset ROCR_VISIBLE_DEVICES export HIP_VISIBLE_DEVICES=\$GPU rank=\$SLURM_PROCID CMD="numactl -m \$NUMA -N \$NUMA \$*" exec \$CMD EOF chmod +x ./select_gpu # GPU_MAP/NUMA_MAP above describe a full node. At fewer than 8 ranks per node # Slurm hands each task cpus-per-task cores block-wise from core 0, so the NUMA # domain NUMA_MAP names is not in the task's allowed cpu mask and numactl fails # with EINVAL before Grid starts. The GPU choice stays valid; only the memory # binding does not. For the small correctness runs the binding is irrelevant, # so use a wrapper that picks the GCD and leaves placement to Slurm. cat << EOF > select_gcd #!/bin/bash export GPU_MAP=(0 1 2 3 7 6 5 4) export GPU=\${GPU_MAP[\$SLURM_LOCALID]} unset ROCR_VISIBLE_DEVICES export HIP_VISIBLE_DEVICES=\$GPU exec \$* EOF chmod +x ./select_gcd SELECT=$SLURM_SUBMIT_DIR/select_gpu SELECT_NONUMA=$SLURM_SUBMIT_DIR/select_gcd root=$HOME/ParallelIO/systems/Frontier/ source ${root}/sourceme-rocm7.2.sh export OMP_NUM_THREADS=7 export MPICH_GPU_SUPPORT_ENABLED=1 # Test_aggregate_io writes ref.bin / agg.bin / trunc.bin with *relative* paths, # so they land in the cwd of each rank, which is the submission directory unless # we move. Home is NFS; the whole point of the exercise is Lustre. WORK=/lustre/orion/phy157/proj-shared/phy157_dwf/paboyle/aggio.$SLURM_JOB_ID mkdir -p $WORK cd $WORK # Striping has to be set on the directory before the files are created, and # all three paths inherit it, so the A/B comparison stays fair either way. # Left unset: at 128 nodes the aggregate path is 2.2x faster on the default # layout than on -c -1, while MPI-IO is 2.4x slower on it. See the table in # aggregate_io_scaling.slurm. Set it only to reproduce that interaction. #lfs setstripe -c 32 -S 8M $WORK lfs getstripe -d $WORK # record the inherited layout; needed to read the numbers BIN=$SLURM_SUBMIT_DIR/tests/IO/Test_aggregate_io # ROMIO / Cray MPICH collective buffering report for the reference path. # Verbose; switch on when you want to see what the old path is doing. # export MPICH_MPIIO_STATS=1 # export MPICH_MPIIO_TIMERS=1 # Always state ntasks-per-node explicitly. Letting srun derive it from -n # gives an uneven packing (3,2,2,2 for -n9 over 4 nodes) which no fixed # localid -> GCD map can describe. Ranks per node must not exceed 8. run () { # run [extra args...] local nodes=$1 rpn=$2 gr=$3 mp=$4 note=$5 wrap=$SELECT local nranks=$(( $1 * $2 )) shift 5 if [ $rpn -ne 8 ]; then wrap=$SELECT_NONUMA; fi # NUMA_MAP only valid at 8 echo echo "===================================================================" echo "=== N=$nodes x $rpn = $nranks grid=$gr mpi=$mp $note" echo "=== extra: $@" echo "===================================================================" srun -N$nodes -n$nranks --ntasks-per-node=$rpn $wrap $BIN --grid $gr --mpi $mp \ --accelerator-threads 8 --shm 2048 --device-mem 32000 "$@" echo "=== exit $?" } ##################################################################### # Phase 0. Non-uniform AllToAllV, correctness only. # # The variable-count branch of CartesianCommunicator::AllToAllV only runs # when the send counts differ between destinations, which needs an odd # process factor in an un-split (fast) dimension. It does NOT need a toy # volume -- see phase 1b, which hits it at 226 MB/rank. The one small run # kept here is the only way to reach the non-uniform case at k=1 with many # extents per rank; it is a logic corner, carries --io-reps 0, and reports # no bandwidth. 2.2.4.4 per rank is 9 KB and means nothing for I/O. ##################################################################### run 3 3 6.6.4.4 3.3.1.1 "non-uniform at all four targets, k=1 and k=3" --io-reps 0 ##################################################################### # Phase 1. Medium volume, 4.8 GB record, 151 MB/rank. # Correctness plus performance at the production 4MB target only; the # byte-for-byte comparison reads the whole file on one rank, so the # full four target sweep is not affordable above a few GB. ##################################################################### run 4 8 32.32.64.128 4.4.2.1 "4.8 GB, correctness + perf" --aggregate-target 4194304 ##################################################################### # Phase 1b. Non-uniform AllToAllV at a volume that means something. # 24 ranks = 3 nodes x 8, so the NUMA map stays valid. # 48.48.64.64 / 3.2.2.2 k=2 row=6 <=6 extents of 13.5 MB NON-UNIFORM # 5.4 GB record, 226 MB/rank. Correctness and performance together, so # the variable-count path is covered where the bandwidth is also real. ##################################################################### run 3 8 48.48.64.64 3.2.2.2 "5.4 GB, NON-UNIFORM counts, correctness + perf" --aggregate-target 4194304 ##################################################################### # Phase 2. Production volume, 19.3 GB record, 604 MB/rank. # Correctness off. Modelled extents at the 4MB target (fobj = 576 B): # 1.1.4.8 k=2 row=1 16 extents of 36 MB <- old path gives 36 KB runs # 4.4.2.1 k=2 row=16 8 extents of 72 MB <- old path gives 9 KB runs # 2.2.2.4 k=2 row=4 8 extents # 8.4.1.1 k=2 row=32 4 extents ##################################################################### run 4 8 64.64.64.128 1.1.4.8 "19.3 GB, baseline decomposition" --aggregate-target 4194304 --io-no-correctness run 4 8 64.64.64.128 4.4.2.1 "19.3 GB, row of 32" --aggregate-target 4194304 --io-no-correctness run 4 8 64.64.64.128 2.2.2.4 "19.3 GB, row of 4" --aggregate-target 4194304 --io-no-correctness run 4 8 64.64.64.128 8.4.1.1 "19.3 GB, row of 32, x heavy" --aggregate-target 4194304 --io-no-correctness # 10.9 GB with non-uniform counts, 453 MB/rank, 27 MB extents, 24 ranks. run 3 8 48.96.64.64 3.4.2.1 "10.9 GB, NON-UNIFORM counts" --aggregate-target 4194304 --io-no-correctness ##################################################################### # Phase 3. Large volume, 43.5 GB record, 1.36 GB/rank. # Host side buffering is 3 copies of the local slice, so ~4 GB/rank # and ~33 GB/node. Two repetitions only. ##################################################################### run 4 8 64.64.96.192 1.1.4.8 "43.5 GB, baseline" --aggregate-target 4194304 --io-no-correctness --io-reps 2 run 4 8 64.64.96.192 4.4.2.1 "43.5 GB, row of 32" --aggregate-target 4194304 --io-no-correctness --io-reps 2 echo echo "=== done. Output left in $WORK" ls -l $WORK