#ifndef GRID_STENCIL_H #define GRID_STENCIL_H #include // subdir aggregate ////////////////////////////////////////////////////////////////////////////////////////// // Must not lose sight that goal is to be able to construct really efficient // gather to a point stencil code. CSHIFT is not the best way, so need // additional stencil support. // // Stencil based code will pre-exchange haloes and use a table lookup for neighbours. // This will be done with generality to allow easier efficient implementations. // Overlap of comms and compute could be semi-automated by tabulating off-node connected, // and // // Lattice could also allocate haloes which get used for stencil code. // // Grid could create a neighbour index table for a given stencil. // // Could also implement CovariantCshift, to fuse the loops and enhance performance. // // // General stencil computation: // // Generic services // 0) Prebuild neighbour tables // 1) Compute sizes of all haloes/comms buffers; allocate them. // // 2) Gather all faces, and communicate. // 3) Loop over result sites, giving nbr index/offnode info for each // // Could take a // SpinProjectFaces // start comms // complete comms // Reconstruct Umu // // Approach. // ////////////////////////////////////////////////////////////////////////////////////////// namespace Grid { struct StencilEntry { int _offset; int _is_local; int _permute; int _around_the_world; }; template class CartesianStencil { // Stencil runs along coordinate axes only; NO diagonal fill in. public: typedef uint32_t StencilInteger; typedef typename cobj::vector_type vector_type; typedef typename cobj::scalar_type scalar_type; typedef typename cobj::scalar_object scalar_object; int _checkerboard; int _npoints; // Move to template param? GridBase * _grid; // npoints of these std::vector _directions; std::vector _distances; std::vector _comm_buf_size; std::vector _permute_type; // npoints x Osites() of these std::vector > _entries; // Comms buffers std::vector > send_buf_extract; std::vector > recv_buf_extract; std::vector pointers; std::vector rpointers; Vector send_buf; inline StencilEntry * GetEntry(int &ptype,int point,int osite) { ptype = _permute_type[point]; return & _entries[point][osite]; } int _unified_buffer_size; int _request_count; double buftime; double gathertime; double commtime; double commstime; double halotime; double scattertime; double mergetime; double gathermtime; double splicetime; double nosplicetime; CartesianStencil(GridBase *grid, int npoints, int checkerboard, const std::vector &directions, const std::vector &distances) : _entries(npoints), _permute_type(npoints), _comm_buf_size(npoints) { gathertime=0; commtime=0; commstime=0; halotime=0; scattertime=0; mergetime=0; gathermtime=0; buftime=0; splicetime=0; nosplicetime=0; _npoints = npoints; _grid = grid; _directions = directions; _distances = distances; _unified_buffer_size=0; _request_count =0; int osites = _grid->oSites(); for(int i=0;i_fdimensions[dimension]; int rd = _grid->_rdimensions[dimension]; _permute_type[point]=_grid->PermuteType(dimension); _checkerboard = checkerboard; // the permute type int simd_layout = _grid->_simd_layout[dimension]; int comm_dim = _grid->_processors[dimension] >1 ; int splice_dim = _grid->_simd_layout[dimension]>1 && (comm_dim); int sshift[2]; // Underlying approach. For each local site build // up a table containing the npoint "neighbours" and whether they // live in lattice or a comms buffer. if ( !comm_dim ) { sshift[0] = _grid->CheckerBoardShiftForCB(_checkerboard,dimension,shift,Even); sshift[1] = _grid->CheckerBoardShiftForCB(_checkerboard,dimension,shift,Odd); if ( sshift[0] == sshift[1] ) { Local(point,dimension,shift,0x3); } else { Local(point,dimension,shift,0x1);// if checkerboard is unfavourable take two passes Local(point,dimension,shift,0x2);// both with block stride loop iteration } } else { // All permute extract done in comms phase prior to Stencil application // So tables are the same whether comm_dim or splice_dim sshift[0] = _grid->CheckerBoardShiftForCB(_checkerboard,dimension,shift,Even); sshift[1] = _grid->CheckerBoardShiftForCB(_checkerboard,dimension,shift,Odd); if ( sshift[0] == sshift[1] ) { Comms(point,dimension,shift,0x3); // std::cout<<"Comms 0x3"< o"<<_entries[i][ss]._offset<<"; l"<< // _entries[i][ss]._is_local<<"; p"<<_entries[i][ss]._permute<_fdimensions[dimension]; int rd = _grid->_rdimensions[dimension]; int ld = _grid->_ldimensions[dimension]; int gd = _grid->_gdimensions[dimension]; // Map to always positive shift modulo global full dimension. int shift = (shiftpm+fd)%fd; // the permute type int permute_dim =_grid->PermuteDim(dimension); for(int x=0;x_ostride[dimension]; int cb= (cbmask==0x2)? Odd : Even; int sshift = _grid->CheckerBoardShiftForCB(_checkerboard,dimension,shift,cb); int sx = (x+sshift)%rd; int wraparound=0; if ( (shiftpm==-1) && (sx>x) ) { wraparound = 1; } if ( (shiftpm== 1) && (sx_fdimensions[dimension]; int ld = _grid->_ldimensions[dimension]; int rd = _grid->_rdimensions[dimension]; int pd = _grid->_processors[dimension]; int simd_layout = _grid->_simd_layout[dimension]; int comm_dim = _grid->_processors[dimension] >1 ; // assert(simd_layout==1); // Why? assert(comm_dim==1); int shift = (shiftpm + fd) %fd; assert(shift>=0); assert(shift_slice_nblock[dimension]*_grid->_slice_block[dimension]; _comm_buf_size[point] = buffer_size; // Size of _one_ plane. Multiple planes may be gathered and // send to one or more remote nodes. int cb= (cbmask==0x2)? Odd : Even; int sshift= _grid->CheckerBoardShiftForCB(_checkerboard,dimension,shift,cb); for(int x=0;xx) && (grid->_processor_coor[dimension]==0) ) { wraparound = 1; } if ( (shiftpm== 1) && (sx_processor_coor[dimension]==grid->_processors[dimension]-1) ) { wraparound = 1; } if (!offnode) { int permute_slice=0; CopyPlane(point,dimension,x,sx,cbmask,permute_slice,wraparound); } else { int words = buffer_size; if (cbmask != 0x3) words=words>>1; // GatherPlaneSimple (point,dimension,sx,cbmask); int rank = grid->_processor; int recv_from_rank; int xmit_to_rank; int unified_buffer_offset = _unified_buffer_size; _unified_buffer_size += words; ScatterPlane(point,dimension,x,cbmask,unified_buffer_offset,wraparound); // permute/extract/merge is done in comms phase } } } // Routine builds up integer table for each site in _offsets, _is_local, _permute void CopyPlane(int point, int dimension,int lplane,int rplane,int cbmask,int permute,int wrap) { int rd = _grid->_rdimensions[dimension]; if ( !_grid->CheckerBoarded(dimension) ) { int o = 0; // relative offset to base within plane int ro = rplane*_grid->_ostride[dimension]; // base offset for start of plane int lo = lplane*_grid->_ostride[dimension]; // offset in buffer // Simple block stride gather of SIMD objects for(int n=0;n<_grid->_slice_nblock[dimension];n++){ for(int b=0;b<_grid->_slice_block[dimension];b++){ _entries[point][lo+o+b]._offset =ro+o+b; _entries[point][lo+o+b]._is_local=1; _entries[point][lo+o+b]._permute=permute; _entries[point][lo+o+b]._around_the_world=wrap; } o +=_grid->_slice_stride[dimension]; } } else { int ro = rplane*_grid->_ostride[dimension]; // base offset for start of plane int lo = lplane*_grid->_ostride[dimension]; // base offset for start of plane int o = 0; // relative offset to base within plane for(int n=0;n<_grid->_slice_nblock[dimension];n++){ for(int b=0;b<_grid->_slice_block[dimension];b++){ int ocb=1<<_grid->CheckerBoardFromOindex(o+b); if ( ocb&cbmask ) { _entries[point][lo+o+b]._offset =ro+o+b; _entries[point][lo+o+b]._is_local=1; _entries[point][lo+o+b]._permute=permute; _entries[point][lo+o+b]._around_the_world=wrap; } } o +=_grid->_slice_stride[dimension]; } } } // Routine builds up integer table for each site in _offsets, _is_local, _permute void ScatterPlane (int point,int dimension,int plane,int cbmask,int offset, int wrap) { int rd = _grid->_rdimensions[dimension]; if ( !_grid->CheckerBoarded(dimension) ) { int so = plane*_grid->_ostride[dimension]; // base offset for start of plane int o = 0; // relative offset to base within plane int bo = 0; // offset in buffer // Simple block stride gather of SIMD objects for(int n=0;n<_grid->_slice_nblock[dimension];n++){ for(int b=0;b<_grid->_slice_block[dimension];b++){ _entries[point][so+o+b]._offset =offset+(bo++); _entries[point][so+o+b]._is_local=0; _entries[point][so+o+b]._permute=0; _entries[point][so+o+b]._around_the_world=wrap; } o +=_grid->_slice_stride[dimension]; } } else { int so = plane*_grid->_ostride[dimension]; // base offset for start of plane int o = 0; // relative offset to base within plane int bo = 0; // offset in buffer for(int n=0;n<_grid->_slice_nblock[dimension];n++){ for(int b=0;b<_grid->_slice_block[dimension];b++){ int ocb=1<<_grid->CheckerBoardFromOindex(o+b);// Could easily be a table lookup if ( ocb & cbmask ) { _entries[point][so+o+b]._offset =offset+(bo++); _entries[point][so+o+b]._is_local=0; _entries[point][so+o+b]._permute =0; _entries[point][so+o+b]._around_the_world=wrap; } } o +=_grid->_slice_stride[dimension]; } } } // CartesianStencil(GridBase *grid, // int npoints, // int checkerboard, // const std::vector &directions, // const std::vector &distances); // Add to tables for various cases; is this mistaken. only local if 1 proc in dim // Can this be avoided with simpler coding of comms? // void Local (int point, int dimension,int shift,int cbmask); // void Comms (int point, int dimension,int shift,int cbmask); // void CopyPlane(int point, int dimension,int lplane,int rplane,int cbmask,int permute,int wrap); // void ScatterPlane (int point,int dimension,int plane,int cbmask,int offset,int wrap); // Could allow a functional munging of the halo to another type during the comms. // this could implement the 16bit/32bit/64bit compression. void HaloExchange(const Lattice &source,std::vector > &u_comm_buf,compressor &compress) { // conformable(source._grid,_grid); assert(source._grid==_grid); halotime-=usecond(); if (u_comm_buf.size() != _unified_buffer_size ) u_comm_buf.resize(_unified_buffer_size); int u_comm_offset=0; // Gather all comms buffers for(int point = 0 ; point < _npoints; point++) { compress.Point(point); int dimension = _directions[point]; int displacement = _distances[point]; int fd = _grid->_fdimensions[dimension]; int rd = _grid->_rdimensions[dimension]; // Map to always positive shift modulo global full dimension. int shift = (displacement+fd)%fd; // int checkerboard = _grid->CheckerBoardDestination(source.checkerboard,shift); assert (source.checkerboard== _checkerboard); // the permute type int simd_layout = _grid->_simd_layout[dimension]; int comm_dim = _grid->_processors[dimension] >1 ; int splice_dim = _grid->_simd_layout[dimension]>1 && (comm_dim); // Gather phase int sshift [2]; if ( comm_dim ) { sshift[0] = _grid->CheckerBoardShiftForCB(_checkerboard,dimension,shift,Even); sshift[1] = _grid->CheckerBoardShiftForCB(_checkerboard,dimension,shift,Odd); if ( sshift[0] == sshift[1] ) { if (splice_dim) { splicetime-=usecond(); GatherStartCommsSimd(source,dimension,shift,0x3,u_comm_buf,u_comm_offset,compress); splicetime+=usecond(); } else { nosplicetime-=usecond(); GatherStartComms(source,dimension,shift,0x3,u_comm_buf,u_comm_offset,compress); nosplicetime+=usecond(); } } else { std::cout << "dim "< &rhs,int dimension,int shift,int cbmask, std::vector > &u_comm_buf, int &u_comm_offset,compressor & compress) { typedef typename cobj::vector_type vector_type; typedef typename cobj::scalar_type scalar_type; GridBase *grid=_grid; assert(rhs._grid==_grid); // conformable(_grid,rhs._grid); int fd = _grid->_fdimensions[dimension]; int rd = _grid->_rdimensions[dimension]; int pd = _grid->_processors[dimension]; int simd_layout = _grid->_simd_layout[dimension]; int comm_dim = _grid->_processors[dimension] >1 ; assert(simd_layout==1); assert(comm_dim==1); assert(shift>=0); assert(shift_slice_nblock[dimension]*_grid->_slice_block[dimension]; if(send_buf.size()CheckerBoardShiftForCB(rhs.checkerboard,dimension,shift,cb); for(int x=0;x>1; int bytes = words * sizeof(cobj); gathertime-=usecond(); Gather_plane_simple (rhs,send_buf,dimension,sx,cbmask,compress); gathertime+=usecond(); int rank = _grid->_processor; int recv_from_rank; int xmit_to_rank; _grid->ShiftedRanks(dimension,comm_proc,xmit_to_rank,recv_from_rank); assert (xmit_to_rank != _grid->ThisRank()); assert (recv_from_rank != _grid->ThisRank()); // FIXME Implement asynchronous send & also avoid buffer copy commtime-=usecond(); _grid->SendToRecvFrom((void *)&send_buf[0], xmit_to_rank, (void *)&u_comm_buf[u_comm_offset], recv_from_rank, bytes); commtime+=usecond(); u_comm_offset+=words; } } } void GatherStartCommsSimd(const Lattice &rhs,int dimension,int shift,int cbmask, std::vector > &u_comm_buf, int &u_comm_offset,compressor &compress) { buftime-=usecond(); const int Nsimd = _grid->Nsimd(); int fd = _grid->_fdimensions[dimension]; int rd = _grid->_rdimensions[dimension]; int ld = _grid->_ldimensions[dimension]; int pd = _grid->_processors[dimension]; int simd_layout = _grid->_simd_layout[dimension]; int comm_dim = _grid->_processors[dimension] >1 ; assert(comm_dim==1); assert(simd_layout==2); assert(shift>=0); assert(shiftPermuteType(dimension); /////////////////////////////////////////////// // Simd direction uses an extract/merge pair /////////////////////////////////////////////// int buffer_size = _grid->_slice_nblock[dimension]*_grid->_slice_block[dimension]; int words = sizeof(cobj)/sizeof(vector_type); assert(cbmask==0x3); // Fixme think there is a latent bug if not true // Should grow to max size and then cost very little thereafter send_buf_extract.resize(Nsimd); recv_buf_extract.resize(Nsimd); for(int l=0;lCheckerBoardShiftForCB(rhs.checkerboard,dimension,shift,cb); // loop over outer coord planes orthog to dim for(int x=0;x= rd ); if ( any_offnode ) { for(int i=0;i(rhs,pointers,dimension,sx,cbmask,compress); gathermtime+=usecond(); for(int i=0;i>(permute_type+1)); int ic= (i&inner_bit)? 1:0; int my_coor = rd*ic + x; int nbr_coor = my_coor+sshift; int nbr_proc = ((nbr_coor)/ld) % pd;// relative shift in processors int nbr_lcoor= (nbr_coor%ld); int nbr_ic = (nbr_lcoor)/rd; // inner coord of peer int nbr_ox = (nbr_lcoor%rd); // outer coord of peer int nbr_lane = (i&(~inner_bit)); int recv_from_rank; int xmit_to_rank; if (nbr_ic) nbr_lane|=inner_bit; assert (sx == nbr_ox); if(nbr_proc){ _grid->ShiftedRanks(dimension,nbr_proc,xmit_to_rank,recv_from_rank); commstime-=usecond(); _grid->SendToRecvFrom((void *)&send_buf_extract[nbr_lane][0], xmit_to_rank, (void *)&recv_buf_extract[i][0], recv_from_rank, bytes); commstime+=usecond(); rpointers[i] = &recv_buf_extract[i][0]; } else { rpointers[i] = &send_buf_extract[nbr_lane][0]; } } // Here we don't want to scatter, just place into a buffer. mergetime-=usecond(); PARALLEL_FOR_LOOP for(int i=0;i