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https://github.com/paboyle/Grid.git
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dc814f30da
Number of IO MPI tasks can be varied by selecting which dimensions use parallel IO and which dimensions use Serial send to boss I/O. Thus can neck down from, say 1024 nodes = 4x4x8x8 to {1,8,32,64,128,256,1024} nodes doing the I/O. Interpolates nicely between ALL nodes write their data, a single boss per time-plane in processor space [old UKQCD fortran code did this], and a single node doing all I/O. Not sure I have the transfer sizes big enough and am not overly convinced fstream is guaranteed to not give buffer inconsistencies unless I set streambuf size to zero. Practically it has worked on 8 tasks, 2x1x2x2 writing /cloning NERSC configurations on my MacOS + OpenMPI and Clang environment. It is VERY easy to switch to pwrite at a later date, and also easy to send x-strips around from each node in order to gather bigger chunks at the syscall level. That would push us up to the circa 8x 18*4*8 == 4KB size write chunk, and by taking, say, x/y non parallel we get to 16MB contiguous chunks written in multi 4KB transactions per IOnode in 64^3 lattices for configuration I/O. I suspect this is fine for system performance.
158 lines
3.9 KiB
C++
158 lines
3.9 KiB
C++
#include "Grid.h"
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#include <mpi.h>
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namespace Grid {
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// Should error check all MPI calls.
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CartesianCommunicator::CartesianCommunicator(const std::vector<int> &processors)
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{
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_ndimension = processors.size();
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std::vector<int> periodic(_ndimension,1);
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_Nprocessors=1;
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_processors = processors;
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_processor_coor.resize(_ndimension);
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MPI_Cart_create(MPI_COMM_WORLD, _ndimension,&_processors[0],&periodic[0],1,&communicator);
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MPI_Comm_rank(communicator,&_processor);
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MPI_Cart_coords(communicator,_processor,_ndimension,&_processor_coor[0]);
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for(int i=0;i<_ndimension;i++){
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_Nprocessors*=_processors[i];
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}
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int Size;
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MPI_Comm_size(communicator,&Size);
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assert(Size==_Nprocessors);
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}
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void CartesianCommunicator::GlobalSum(uint32_t &u){
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int ierr=MPI_Allreduce(MPI_IN_PLACE,&u,1,MPI_UINT32_T,MPI_SUM,communicator);
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assert(ierr==0);
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}
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void CartesianCommunicator::GlobalSum(float &f){
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int ierr=MPI_Allreduce(MPI_IN_PLACE,&f,1,MPI_FLOAT,MPI_SUM,communicator);
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assert(ierr==0);
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}
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void CartesianCommunicator::GlobalSumVector(float *f,int N)
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{
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int ierr=MPI_Allreduce(MPI_IN_PLACE,f,N,MPI_FLOAT,MPI_SUM,communicator);
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assert(ierr==0);
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}
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void CartesianCommunicator::GlobalSum(double &d)
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{
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int ierr = MPI_Allreduce(MPI_IN_PLACE,&d,1,MPI_DOUBLE,MPI_SUM,communicator);
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assert(ierr==0);
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}
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void CartesianCommunicator::GlobalSumVector(double *d,int N)
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{
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int ierr = MPI_Allreduce(MPI_IN_PLACE,d,N,MPI_DOUBLE,MPI_SUM,communicator);
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assert(ierr==0);
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}
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void CartesianCommunicator::ShiftedRanks(int dim,int shift,int &source,int &dest)
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{
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int ierr=MPI_Cart_shift(communicator,dim,shift,&source,&dest);
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assert(ierr==0);
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}
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int CartesianCommunicator::RankFromProcessorCoor(std::vector<int> &coor)
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{
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int rank;
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int ierr=MPI_Cart_rank (communicator, &coor[0], &rank);
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assert(ierr==0);
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return rank;
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}
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void CartesianCommunicator::ProcessorCoorFromRank(int rank, std::vector<int> &coor)
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{
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coor.resize(_ndimension);
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int ierr=MPI_Cart_coords (communicator, rank, _ndimension,&coor[0]);
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assert(ierr==0);
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}
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// Basic Halo comms primitive
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void CartesianCommunicator::SendToRecvFrom(void *xmit,
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int dest,
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void *recv,
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int from,
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int bytes)
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{
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std::vector<CommsRequest_t> reqs(0);
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SendToRecvFromBegin(reqs,xmit,dest,recv,from,bytes);
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SendToRecvFromComplete(reqs);
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}
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void CartesianCommunicator::RecvFrom(void *recv,
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int from,
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int bytes)
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{
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MPI_Status stat;
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int ierr=MPI_Recv(recv, bytes, MPI_CHAR,from,from,communicator,&stat);
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assert(ierr==0);
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}
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void CartesianCommunicator::SendTo(void *xmit,
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int dest,
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int bytes)
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{
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int rank = _processor; // used for tag; must know who it comes from
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int ierr = MPI_Send(xmit, bytes, MPI_CHAR,dest,_processor,communicator);
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assert(ierr==0);
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}
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// Basic Halo comms primitive
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void CartesianCommunicator::SendToRecvFromBegin(std::vector<CommsRequest_t> &list,
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void *xmit,
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int dest,
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void *recv,
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int from,
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int bytes)
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{
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MPI_Request xrq;
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MPI_Request rrq;
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int rank = _processor;
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int ierr;
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ierr =MPI_Isend(xmit, bytes, MPI_CHAR,dest,_processor,communicator,&xrq);
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ierr|=MPI_Irecv(recv, bytes, MPI_CHAR,from,from,communicator,&rrq);
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assert(ierr==0);
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list.push_back(xrq);
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list.push_back(rrq);
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}
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void CartesianCommunicator::SendToRecvFromComplete(std::vector<CommsRequest_t> &list)
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{
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int nreq=list.size();
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std::vector<MPI_Status> status(nreq);
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int ierr = MPI_Waitall(nreq,&list[0],&status[0]);
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assert(ierr==0);
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}
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void CartesianCommunicator::Barrier(void)
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{
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int ierr = MPI_Barrier(communicator);
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assert(ierr==0);
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}
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void CartesianCommunicator::Broadcast(int root,void* data, int bytes)
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{
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int ierr=MPI_Bcast(data,
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bytes,
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MPI_BYTE,
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root,
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communicator);
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assert(ierr==0);
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}
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void CartesianCommunicator::BroadcastWorld(int root,void* data, int bytes)
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{
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int ierr= MPI_Bcast(data,
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bytes,
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MPI_BYTE,
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root,
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MPI_COMM_WORLD);
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assert(ierr==0);
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}
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}
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