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Grid/Hadrons/Distil.hpp
Michael Marshall 61d017d0a5 Merge GPU support (upstream/develop) into distillation branch.
This compiles and looks right ... but may need some testing

* develop: (762 commits)
  Tensor ambiguous fix
  Fix for GCC preprocessor/pragma handling bug
  Trips up NVCC for reasons I dont understand on summit
  Fix GCC complaint
  Zero() change
  Force a couple of things to compile on NVCC
  Remove debug code
  nvcc error suppress
  Merge develop
  Reduction finished and hopefully fixes CI regression fail on single precisoin and force
  Double precision variants for summation accuracy
  Update todo list
  Freeze the seed
  Fix compiling of MSource::Gauss for single precision
  Think the reduction is now sorted and cleaned up
  Fix force term
  Printing improvement
  GPU reduction fix and also exit backtrace option
  GPU friendly
  Simplify the comms benchmark
  ...

# Conflicts:
#	Grid/communicator/SharedMemoryMPI.cc
#	Grid/qcd/action/fermion/WilsonKernelsAsm.cc
#	Grid/qcd/action/fermion/implementation/StaggeredKernelsAsm.h
#	Grid/qcd/smearing/StoutSmearing.h
#	Hadrons/Modules.hpp
#	Hadrons/Utilities/Contractor.cc
#	Hadrons/modules.inc
#	tests/forces/Test_dwf_force_eofa.cc
#	tests/forces/Test_dwf_gpforce_eofa.cc
2019-09-13 13:30:00 +01:00

695 lines
30 KiB
C++

/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: Hadrons/Modules/MDistil/Distil.hpp
Copyright (C) 2015-2019
Author: Felix Erben <ferben@ed.ac.uk>
Author: Michael Marshall <Michael.Marshall@ed.ac.uk>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#ifndef Hadrons_MDistil_Distil_hpp_
#define Hadrons_MDistil_Distil_hpp_
#include <Hadrons/Global.hpp>
#include <Hadrons/Module.hpp>
#include <Hadrons/ModuleFactory.hpp>
#include <Hadrons/Solver.hpp>
#include <Hadrons/EigenPack.hpp>
#include <Hadrons/A2AVectors.hpp>
#include <Hadrons/DilutedNoise.hpp>
/******************************************************************************
A consistent set of cross-platform methods for big endian <-> host byte ordering
I imagine this exists already?
This can be removed once the (deprecated) NamedTensor::ReadBinary & WriteBinary methods are deleted
******************************************************************************/
#if defined(__linux__)
# include <endian.h>
#elif defined(__FreeBSD__) || defined(__NetBSD__)
# include <sys/endian.h>
#elif defined(__OpenBSD__)
# include <sys/types.h>
# define be16toh(x) betoh16(x)
# define be32toh(x) betoh32(x)
# define be64toh(x) betoh64(x)
#elif defined(__APPLE__)
#include <libkern/OSByteOrder.h>
#define htobe16(x) OSSwapHostToBigInt16(x)
#define htole16(x) OSSwapHostToLittleInt16(x)
#define be16toh(x) OSSwapBigToHostInt16(x)
#define le16toh(x) OSSwapLittleToHostInt16(x)
#define htobe32(x) OSSwapHostToBigInt32(x)
#define htole32(x) OSSwapHostToLittleInt32(x)
#define be32toh(x) OSSwapBigToHostInt32(x)
#define le32toh(x) OSSwapLittleToHostInt32(x)
#define htobe64(x) OSSwapHostToBigInt64(x)
#define htole64(x) OSSwapHostToLittleInt64(x)
#define be64toh(x) OSSwapBigToHostInt64(x)
#define le64toh(x) OSSwapLittleToHostInt64(x)
#endif
/******************************************************************************
This potentially belongs in CartesianCommunicator
******************************************************************************/
BEGIN_MODULE_NAMESPACE(Grid)
inline void SliceShare( GridBase * gridLowDim, GridBase * gridHighDim, void * Buffer, int BufferSize )
{
// Work out which dimension is the spread-out dimension
assert(gridLowDim);
assert(gridHighDim);
const int iNumDims{(const int)gridHighDim->_gdimensions.size()};
assert(iNumDims == gridLowDim->_gdimensions.size());
int dimSpreadOut = -1;
Coordinate coor(iNumDims);
for( int i = 0 ; i < iNumDims ; i++ ) {
coor[i] = gridHighDim->_processor_coor[i];
if( gridLowDim->_gdimensions[i] != gridHighDim->_gdimensions[i] ) {
assert( dimSpreadOut == -1 );
assert( gridLowDim->_processors[i] == 1 ); // easiest assumption to make for now
dimSpreadOut = i;
}
}
if( dimSpreadOut != -1 && gridHighDim->_processors[dimSpreadOut] != gridLowDim->_processors[dimSpreadOut] ) {
// Make sure the same number of data elements exist on each slice
const int NumSlices{gridHighDim->_processors[dimSpreadOut] / gridLowDim->_processors[dimSpreadOut]};
assert(gridHighDim->_processors[dimSpreadOut] == gridLowDim->_processors[dimSpreadOut] * NumSlices);
const int SliceSize{BufferSize/NumSlices};
//CCC_DEBUG_DUMP(Buffer, NumSlices, SliceSize);
assert(BufferSize == SliceSize * NumSlices);
//#ifndef USE_LOCAL_SLICES
// assert(0); // Can't do this without MPI (should really test whether MPI is defined)
//#else
const auto MyRank = gridHighDim->ThisRank();
std::vector<CommsRequest_t> reqs(0);
int MySlice{coor[dimSpreadOut]};
char * const _buffer{(char *)Buffer};
char * const MyData{_buffer + MySlice * SliceSize};
for(int i = 1; i < NumSlices ; i++ ){
int SendSlice = ( MySlice + i ) % NumSlices;
int RecvSlice = ( MySlice - i + NumSlices ) % NumSlices;
char * const RecvData{_buffer + RecvSlice * SliceSize};
coor[dimSpreadOut] = SendSlice;
const auto SendRank = gridHighDim->RankFromProcessorCoor(coor);
coor[dimSpreadOut] = RecvSlice;
const auto RecvRank = gridHighDim->RankFromProcessorCoor(coor);
std::cout << GridLogMessage << "Send slice " << MySlice << " (" << MyRank << ") to " << SendSlice << " (" << SendRank
<< "), receive slice from " << RecvSlice << " (" << RecvRank << ")" << std::endl;
gridHighDim->SendToRecvFromBegin(reqs,MyData,SendRank,RecvData,RecvRank,SliceSize);
//memcpy(RecvData,MyData,SliceSize); // Debug
}
gridHighDim->SendToRecvFromComplete(reqs);
std::cout << GridLogMessage << "Slice data shared." << std::endl;
//CCC_DEBUG_DUMP(Buffer, NumSlices, SliceSize);
//#endif
}
}
/*************************************************************************************
Not sure where the right home for this is? But presumably in Grid
-Grad^2 (Peardon, 2009, pg 2, equation 3, https://arxiv.org/abs/0905.2160)
Field Type of field the operator will be applied to
GaugeField Gauge field the operator will smear using
*************************************************************************************/
template<typename Field, typename GaugeField=LatticeGaugeField>
class LinOpPeardonNabla : public LinearOperatorBase<Field>, public LinearFunction<Field> {
typedef typename GaugeField::vector_type vCoeff_t;
protected: // I don't really mind if _gf is messed with ... so make this public?
//GaugeField & _gf;
int nd; // number of spatial dimensions
std::vector<Lattice<iColourMatrix<vCoeff_t> > > U;
public:
// Construct this operator given a gauge field and the number of dimensions it should act on
LinOpPeardonNabla( GaugeField& gf, int dimSpatial = Tdir ) : /*_gf(gf),*/ nd{dimSpatial} {
assert(dimSpatial>=1);
for( int mu = 0 ; mu < nd ; mu++ )
U.push_back(PeekIndex<LorentzIndex>(gf,mu));
}
// Apply this operator to "in", return result in "out"
void operator()(const Field& in, Field& out) {
assert( nd <= in.Grid()->Nd() );
conformable( in, out );
out = ( ( Real ) ( 2 * nd ) ) * in;
Field _tmp(in.Grid());
typedef typename GaugeField::vector_type vCoeff_t;
//Lattice<iColourMatrix<vCoeff_t> > U(in.Grid());
for( int mu = 0 ; mu < nd ; mu++ ) {
//U = PeekIndex<LorentzIndex>(_gf,mu);
out -= U[mu] * Cshift( in, mu, 1);
_tmp = adj( U[mu] ) * in;
out -= Cshift(_tmp,mu,-1);
}
}
void OpDiag (const Field &in, Field &out) { assert(0); };
void OpDir (const Field &in, Field &out,int dir,int disp) { assert(0); };
void Op (const Field &in, Field &out) { assert(0); };
void AdjOp (const Field &in, Field &out) { assert(0); };
void HermOpAndNorm(const Field &in, Field &out,RealD &n1,RealD &n2) { assert(0); };
void HermOp(const Field &in, Field &out) { operator()(in,out); };
};
template<typename Field>
class LinOpPeardonNablaHerm : public LinearFunction<Field> {
public:
OperatorFunction<Field> & _poly;
LinearOperatorBase<Field> &_Linop;
LinOpPeardonNablaHerm(OperatorFunction<Field> & poly,LinearOperatorBase<Field>& linop)
: _poly{poly}, _Linop{linop} {}
void operator()(const Field& in, Field& out) {
_poly(_Linop,in,out);
}
};
END_MODULE_NAMESPACE // Grid
/******************************************************************************
Common elements for distillation
******************************************************************************/
BEGIN_HADRONS_NAMESPACE
BEGIN_MODULE_NAMESPACE(MDistil)
using LapEvecs = Grid::Hadrons::EigenPack<LatticeColourVector>;
// Noise vector index order: nnoise, nt, nvec, ns
using NoiseTensor = Eigen::Tensor<Complex, 4, Eigen::RowMajor>;
struct DistilParameters: Serializable {
GRID_SERIALIZABLE_CLASS_MEMBERS(DistilParameters,
int, nnoise,
int, tsrc,
std::string, TI,
std::string, LI,
std::string, SI )
DistilParameters() = default;
template <class ReaderClass> DistilParameters(Reader<ReaderClass>& Reader){read(Reader,"Distil",*this);}
// Numeric parameter is allowed to be empty (in which case it = Default),
// but assert during setup() if specified but not numeric
static int ParameterDefault( const std::string & s, int Default, bool bCalledFromSetup )
{
int i = Default;
if( s.length() > 0 ) {
std::istringstream ss( s );
ss >> i;
if( bCalledFromSetup )
assert( !ss.fail() && "Parameter should either be empty or integer" );
}
return i;
}
int getTI( const Environment & env, bool bCalledFromSetup ) const {
return ParameterDefault( TI, env.getDim(Tdir), bCalledFromSetup ); }
};
#define DISTIL_PARAMETERS_DEFINE( inSetup ) \
const int Nt{env().getDim(Tdir)}; \
const int nvec{par().nvec}; \
const int Ns{Ns}; \
const int nnoise{par().Distil.nnoise}; \
const int tsrc{par().Distil.tsrc}; \
const int TI{par().Distil.getTI(env(), inSetup)}; \
const int LI{Hadrons::MDistil::DistilParameters::ParameterDefault(par().Distil.LI, nvec, inSetup)}; \
const int SI{Hadrons::MDistil::DistilParameters::ParameterDefault(par().Distil.SI, Ns, inSetup)}; \
const bool full_tdil{ TI == Nt }; \
const bool exact_distillation{ full_tdil && LI == nvec }; \
const int Nt_inv{ full_tdil ? 1 : TI }
class BFieldIO: Serializable{
public:
using BaryonTensorSet = Eigen::Tensor<ComplexD, 6>;
GRID_SERIALIZABLE_CLASS_MEMBERS(BFieldIO, BaryonTensorSet, BField );
};
/******************************************************************************
Default for distillation file operations. For now only used by NamedTensor
******************************************************************************/
#ifdef HAVE_HDF5
using Default_Reader = Grid::Hdf5Reader;
using Default_Writer = Grid::Hdf5Writer;
static const char * FileExtension = ".h5";
#else
using Default_Reader = Grid::BinaryReader;
using Default_Writer = Grid::BinaryWriter;
static const char * FileExtension = ".dat";
#endif
/******************************************************************************
NamedTensor object
This is an Eigen::Tensor of type Scalar_ and rank NumIndices_ (row-major order)
They can be persisted to disk
Scalar_ objects are assumed to be composite objects of size Endian_Scalar_Size.
(Disable big-endian by setting Endian_Scalar_Size=1).
NB: Endian_Scalar_Size will disappear when ReadBinary & WriteBinary retired
IndexNames contains one name for each index, and IndexNames are validated on load.
WHAT TO SAVE / VALIDATE ON LOAD (Override to warn instead of assert on load)
Ensemble string
Configuration number
Noise unique string
Distillation parameters
******************************************************************************/
template<typename Scalar_, int NumIndices_, uint16_t Endian_Scalar_Size_ = sizeof(Scalar_)>
class NamedTensor : Serializable
{
public:
using Scalar = Scalar_;
static constexpr int NumIndices = NumIndices_;
static constexpr uint16_t Endian_Scalar_Size = Endian_Scalar_Size_;
using ET = Eigen::Tensor<Scalar_, NumIndices_, Eigen::RowMajor>;
using Index = typename ET::Index;
GRID_SERIALIZABLE_CLASS_MEMBERS(NamedTensor
, ET, tensor
, std::vector<std::string>, IndexNames
);
public:
// Named tensors are intended to be a superset of Eigen tensor
inline operator ET&() { return tensor; }
template<typename... IndexTypes>
inline const Scalar_& operator()(const std::array<Eigen::Index, NumIndices_> &Indices) const
{ return tensor.operator()(Indices); }
inline Scalar_& operator()(const std::array<Eigen::Index, NumIndices_> &Indices)
{ return tensor.operator()(Indices); }
template<typename... IndexTypes>
inline const Scalar_& operator()(Eigen::Index firstDimension, IndexTypes... otherDimensions) const
{
// The number of indices used to access a tensor coefficient must be equal to the rank of the tensor.
assert(sizeof...(otherDimensions) + 1 == NumIndices_ && "NamedTensor: dimensions != tensor rank");
return tensor.operator()(std::array<Eigen::Index, NumIndices_>{{firstDimension, otherDimensions...}});
}
template<typename... IndexTypes>
inline Scalar_& operator()(Eigen::Index firstDimension, IndexTypes... otherDimensions)
{
// The number of indices used to access a tensor coefficient must be equal to the rank of the tensor.
assert(sizeof...(otherDimensions) + 1 == NumIndices_ && "NamedTensor: dimensions != tensor rank");
return tensor.operator()(std::array<Eigen::Index, NumIndices_>{{firstDimension, otherDimensions...}});
}
// Construct a named tensor explicitly specifying size of each dimension
template<typename... IndexTypes>
EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE NamedTensor(const std::array<std::string,NumIndices_> &IndexNames_, Eigen::Index firstDimension, IndexTypes... otherDimensions)
: tensor(firstDimension, otherDimensions...), IndexNames{NumIndices}
{
// The number of dimensions used to construct a tensor must be equal to the rank of the tensor.
assert(sizeof...(otherDimensions) + 1 == NumIndices_ && "NamedTensor: dimensions != tensor rank");
for( int i = 0; i < NumIndices_; i++ )
IndexNames[i] = IndexNames_[i];
}
// Default constructor (assumes tensor will be loaded from file)
EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE NamedTensor() : IndexNames{NumIndices_} {}
// Construct a named tensor without specifying size of each dimension (because it will be loaded from file)
EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE NamedTensor(const std::array<std::string,NumIndices_> &IndexNames_)
: IndexNames{NumIndices_}
{
for( int i = 0; i < NumIndices_; i++ )
IndexNames[i] = IndexNames_[i];
}
// Share data for timeslices we calculated with other nodes
inline void SliceShare( GridCartesian * gridLowDim, GridCartesian * gridHighDim ) {
Grid::SliceShare( gridLowDim, gridHighDim, tensor.data(), (int) (tensor.size() * sizeof(Scalar_)));
}
bool ValidateIndexNames( int iNumNames, const std::string * MatchNames ) const;
// Read/Write in any format
template<typename Reader> inline void read (Reader &r, const char * pszTag = nullptr);
template<typename Writer> inline void write(Writer &w, const char * pszTag = nullptr) const;
// Read/Write in default format, i.e. HDF5 if present, else binary
inline void read (const char * filename, const char * pszTag = nullptr);
inline void write(const char * filename, const char * pszTag = nullptr) const;
// Original I/O implementation. This will be removed when we're sure it's no longer needed
EIGEN_DEPRECATED inline void ReadBinary (const std::string filename); // To be removed
EIGEN_DEPRECATED inline void WriteBinary(const std::string filename); // To be removed
// Case insensitive compare of two strings
// Pesumably this exists already? Where should this go?
static inline bool CompareCaseInsensitive( const std::string &s1, const std::string &s2 ) {
auto Len = s1.size();
bool bSame{ Len == s2.size() };
for( int j = 0; bSame && j < Len; j++ ) {
wchar_t c1 = s1[j];
if( c1 >= 'a' && c1 <= 'z' )
c1 -= 'a' - 'A';
wchar_t c2 = s2[j];
if( c2 >= 'a' && c1 <= 'z' )
c2 -= 'a' - 'A';
bSame = ( c1 == c2 );
}
return bSame;
}
};
// Is this a named tensor
template<typename T, typename V = void> struct is_named_tensor : public std::false_type {};
template<typename Scalar_, int NumIndices_, uint16_t Endian_Scalar_Size_> struct is_named_tensor<NamedTensor<Scalar_, NumIndices_, Endian_Scalar_Size_>> : public std::true_type {};
template<typename T> struct is_named_tensor<T, typename std::enable_if<std::is_base_of<NamedTensor<typename T::Scalar, T::NumIndices, T::Endian_Scalar_Size_>, T>::value>::type> : public std::true_type {};
/******************************************************************************
PerambTensor object
Endian_Scalar_Size can be removed once (deprecated) NamedTensor::ReadBinary & WriteBinary methods deleted
******************************************************************************/
//template<typename Scalar_, int NumIndices_, uint16_t Endian_Scalar_Size = sizeof(Scalar_)>
using PerambTensor = NamedTensor<SpinVector, 6, sizeof(Real)>;
static const std::array<std::string, 6> PerambIndexNames{"nT", "nVec", "LI", "nNoise", "nT_inv", "SI"};
/******************************************************************************
Save NamedTensor binary format (NB: On-disk format is Big Endian)
Assumes the Scalar_ objects are contiguous (no padding)
******************************************************************************/
template<typename Scalar_, int NumIndices_, uint16_t Endian_Scalar_Size>
void NamedTensor<Scalar_, NumIndices_, Endian_Scalar_Size>::WriteBinary(const std::string filename) {
LOG(Message) << "Writing NamedTensor to \"" << filename << "\"" << std::endl;
std::ofstream w(filename, std::ios::binary);
// Enforce assumption that the scalar is composed of fundamental elements of size Endian_Scalar_Size
assert((Endian_Scalar_Size == 1 || Endian_Scalar_Size == 2 || Endian_Scalar_Size == 4 || Endian_Scalar_Size == 8 )
&& "NamedTensor error: Endian_Scalar_Size should be 1, 2, 4 or 8");
assert((sizeof(Scalar_) % Endian_Scalar_Size) == 0 && "NamedTensor error: Scalar_ is not composed of Endian_Scalar_Size" );
// Size of the data (in bytes)
const uint32_t Scalar_Size{sizeof(Scalar_)};
const auto NumElements = tensor.size();
const std::streamsize TotalDataSize{static_cast<std::streamsize>(NumElements * Scalar_Size)};
uint64_t u64 = htobe64(static_cast<uint64_t>(TotalDataSize));
w.write(reinterpret_cast<const char *>(&u64), sizeof(u64));
// Size of a Scalar_
uint32_t u32{htobe32(Scalar_Size)};
w.write(reinterpret_cast<const char *>(&u32), sizeof(u32));
// Endian_Scalar_Size
uint16_t u16{htobe16(Endian_Scalar_Size)};
w.write(reinterpret_cast<const char *>(&u16), sizeof(u16));
// number of dimensions which aren't 1
u16 = static_cast<uint16_t>(this->NumIndices);
for( auto dim : tensor.dimensions() )
if( dim == 1 )
u16--;
u16 = htobe16( u16 );
w.write(reinterpret_cast<const char *>(&u16), sizeof(u16));
// dimensions together with names
int d = 0;
for( auto dim : tensor.dimensions() ) {
if( dim != 1 ) {
// size of this dimension
u16 = htobe16( static_cast<uint16_t>( dim ) );
w.write(reinterpret_cast<const char *>(&u16), sizeof(u16));
// length of this dimension name
u16 = htobe16( static_cast<uint16_t>( IndexNames[d].size() ) );
w.write(reinterpret_cast<const char *>(&u16), sizeof(u16));
// dimension name
w.write(IndexNames[d].c_str(), IndexNames[d].size());
}
d++;
}
// Actual data
char * const pStart{reinterpret_cast<char *>(tensor.data())};
// Swap to network byte order in place (alternative is to copy memory - still slow)
void * const pEnd{pStart + TotalDataSize};
if(Endian_Scalar_Size == 8)
for(uint64_t * p = reinterpret_cast<uint64_t *>(pStart) ; p < pEnd ; p++ )
* p = htobe64( * p );
else if(Endian_Scalar_Size == 4)
for(uint32_t * p = reinterpret_cast<uint32_t *>(pStart) ; p < pEnd ; p++ )
* p = htobe32( * p );
else if(Endian_Scalar_Size == 2)
for(uint16_t * p = reinterpret_cast<uint16_t *>(pStart) ; p < pEnd ; p++ )
* p = htobe16( * p );
w.write(pStart, TotalDataSize);
// Swap back from network byte order
if(Endian_Scalar_Size == 8)
for(uint64_t * p = reinterpret_cast<uint64_t *>(pStart) ; p < pEnd ; p++ )
* p = be64toh( * p );
else if(Endian_Scalar_Size == 4)
for(uint32_t * p = reinterpret_cast<uint32_t *>(pStart) ; p < pEnd ; p++ )
* p = be32toh( * p );
else if(Endian_Scalar_Size == 2)
for(uint16_t * p = reinterpret_cast<uint16_t *>(pStart) ; p < pEnd ; p++ )
* p = be16toh( * p );
// checksum
#ifdef USE_IPP
u32 = htobe32(GridChecksum::crc32c(tensor.data(), TotalDataSize));
#else
u32 = htobe32(GridChecksum::crc32(tensor.data(), TotalDataSize));
#endif
w.write(reinterpret_cast<const char *>(&u32), sizeof(u32));
}
/******************************************************************************
Load NamedTensor binary format (NB: On-disk format is Big Endian)
Assumes the Scalar_ objects are contiguous (no padding)
******************************************************************************/
template<typename Scalar_, int NumIndices_, uint16_t Endian_Scalar_Size>
void NamedTensor<Scalar_, NumIndices_, Endian_Scalar_Size>::ReadBinary(const std::string filename) {
LOG(Message) << "Reading NamedTensor from \"" << filename << "\"" << std::endl;
std::ifstream r(filename, std::ios::binary);
// Enforce assumption that the scalar is composed of fundamental elements of size Endian_Scalar_Size
assert((Endian_Scalar_Size == 1 || Endian_Scalar_Size == 2 || Endian_Scalar_Size == 4 || Endian_Scalar_Size == 8 )
&& "NamedTensor error: Endian_Scalar_Size should be 1, 2, 4 or 8");
assert((sizeof(Scalar_) % Endian_Scalar_Size) == 0 && "NamedTensor error: Scalar_ is not composed of Endian_Scalar_Size" );
// Size of the data in bytes
const uint32_t Scalar_Size{sizeof(Scalar_)};
Index NumElements{tensor.size()};
std::streamsize TotalDataSize{static_cast<std::streamsize>(NumElements * Scalar_Size)};
uint64_t u64;
r.read(reinterpret_cast<char *>(&u64), sizeof(u64));
assert( TotalDataSize == 0 || TotalDataSize == be64toh( u64 ) && "NamedTensor error: Size of the data in bytes" );
// Size of a Scalar_
uint32_t u32;
r.read(reinterpret_cast<char *>(&u32), sizeof(u32));
assert( Scalar_Size == be32toh( u32 ) && "NamedTensor error: sizeof(Scalar_)");
// Endian_Scalar_Size
uint16_t u16;
r.read(reinterpret_cast<char *>(&u16), sizeof(u16));
assert( Endian_Scalar_Size == be16toh( u16 ) && "NamedTensor error: Scalar_Unit_size");
// number of dimensions which aren't 1
uint16_t NumFileDimensions;
r.read(reinterpret_cast<char *>(&NumFileDimensions), sizeof(NumFileDimensions));
NumFileDimensions = be16toh( NumFileDimensions );
/*for( auto dim : tensor.dimensions() )
if( dim == 1 )
u16++;*/
assert( ( TotalDataSize == 0 && this->NumIndices >= NumFileDimensions || this->NumIndices == NumFileDimensions )
&& "NamedTensor error: number of dimensions which aren't 1" );
if( TotalDataSize == 0 ) {
// Read each dimension, using names to skip past dimensions == 1
std::array<Index,NumIndices_> NewDimensions;
for( Index &i : NewDimensions ) i = 1;
int d = 0;
for( int FileDimension = 0; FileDimension < NumFileDimensions; FileDimension++ ) {
// read dimension
uint16_t thisDim;
r.read(reinterpret_cast<char *>(&thisDim), sizeof(thisDim));
// read dimension name
r.read(reinterpret_cast<char *>(&u16), sizeof(u16));
size_t l = be16toh( u16 );
std::string s( l, '?' );
r.read(&s[0], l);
// skip forward to matching name
while( IndexNames[d].size() > 0 && !CompareCaseInsensitive( s, IndexNames[d] ) )
assert(++d < NumIndices && "NamedTensor error: dimension name" );
if( IndexNames[d].size() == 0 )
IndexNames[d] = s;
NewDimensions[d++] = be16toh( thisDim );
}
tensor.resize(NewDimensions);
NumElements = 1;
for( Index i : NewDimensions ) NumElements *= i;
TotalDataSize = NumElements * Scalar_Size;
} else {
// dimensions together with names
const auto & TensorDims = tensor.dimensions();
for( int d = 0; d < NumIndices_; d++ ) {
// size of dimension
r.read(reinterpret_cast<char *>(&u16), sizeof(u16));
u16 = be16toh( u16 );
assert( TensorDims[d] == u16 && "size of dimension" );
// length of dimension name
r.read(reinterpret_cast<char *>(&u16), sizeof(u16));
size_t l = be16toh( u16 );
assert( l == IndexNames[d].size() && "NamedTensor error: length of dimension name" );
// dimension name
std::string s( l, '?' );
r.read(&s[0], l);
assert( s == IndexNames[d] && "NamedTensor error: dimension name" );
}
}
// Actual data
char * const pStart{reinterpret_cast<char *>(tensor.data())};
void * const pEnd{pStart + TotalDataSize};
r.read(pStart,TotalDataSize);
// Swap back from network byte order
if(Endian_Scalar_Size == 8)
for(uint64_t * p = reinterpret_cast<uint64_t *>(pStart) ; p < pEnd ; p++ )
* p = be64toh( * p );
else if(Endian_Scalar_Size == 4)
for(uint32_t * p = reinterpret_cast<uint32_t *>(pStart) ; p < pEnd ; p++ )
* p = be32toh( * p );
else if(Endian_Scalar_Size == 2)
for(uint16_t * p = reinterpret_cast<uint16_t *>(pStart) ; p < pEnd ; p++ )
* p = be16toh( * p );
// checksum
r.read(reinterpret_cast<char *>(&u32), sizeof(u32));
u32 = be32toh( u32 );
#ifdef USE_IPP
u32 -= GridChecksum::crc32c(tensor.data(), TotalDataSize);
#else
u32 -= GridChecksum::crc32(tensor.data(), TotalDataSize);
#endif
assert( u32 == 0 && "NamedTensor error: PerambTensor checksum invalid");
}
/******************************************************************************
Write NamedTensor
******************************************************************************/
template<typename Scalar_, int NumIndices_, uint16_t Endian_Scalar_Size>
template<typename Writer>
void NamedTensor<Scalar_, NumIndices_, Endian_Scalar_Size>::write(Writer &w, const char * pszTag)const{
if( pszTag == nullptr )
pszTag = "NamedTensor";
LOG(Message) << "Writing NamedTensor to tag " << pszTag << std::endl;
write(w, pszTag, *this);
}
template<typename Scalar_, int NumIndices_, uint16_t Endian_Scalar_Size>
void NamedTensor<Scalar_, NumIndices_, Endian_Scalar_Size>::write(const char * filename, const char * pszTag)const{
std::string sFileName{filename};
sFileName.append( MDistil::FileExtension );
LOG(Message) << "Writing NamedTensor to file " << sFileName << std::endl;
MDistil::Default_Writer w( sFileName );
write( w, pszTag );
}
/******************************************************************************
Validate named tensor index names
******************************************************************************/
template<typename Scalar_, int NumIndices_, uint16_t Endian_Scalar_Size>
bool NamedTensor<Scalar_, NumIndices_, Endian_Scalar_Size>::ValidateIndexNames( int iNumNames, const std::string * MatchNames ) const {
bool bSame{ iNumNames == NumIndices_ && IndexNames.size() == NumIndices_ };
for( int i = 0; bSame && i < NumIndices_; i++ )
bSame = CompareCaseInsensitive( MatchNames[i], IndexNames[i] );
return bSame;
}
/******************************************************************************
Read NamedTensor
******************************************************************************/
template<typename Scalar_, int NumIndices_, uint16_t Endian_Scalar_Size>
template<typename Reader>
void NamedTensor<Scalar_, NumIndices_, Endian_Scalar_Size>::read(Reader &r, const char * pszTag) {
if( pszTag == nullptr )
pszTag = "NamedTensor";
// Grab index names and dimensions
std::vector<std::string> OldIndexNames{std::move(IndexNames)};
typename ET::Dimensions OldDimensions{tensor.dimensions()};
LOG(Message) << "Reading NamedTensor from tag " << pszTag << std::endl;
read(r, pszTag, *this);
const typename ET::Dimensions & NewDimensions{tensor.dimensions()};
for( int i = 0; i < NumIndices_; i++ )
assert(OldDimensions[i] == 0 || OldDimensions[i] == NewDimensions[i] && "NamedTensor::load dimension size");
assert( ValidateIndexNames( OldIndexNames.size(), &OldIndexNames[0] ) && "NamedTensor::load dimension name" );
}
template<typename Scalar_, int NumIndices_, uint16_t Endian_Scalar_Size>
void NamedTensor<Scalar_, NumIndices_, Endian_Scalar_Size>::read(const char * filename, const char * pszTag) {
std::string sFileName{filename};
sFileName.append( MDistil::FileExtension );
LOG(Message) << "Reading NamedTensor from file " << sFileName << std::endl;
MDistil::Default_Reader r( sFileName );
read( r, pszTag );
}
/******************************************************************************
Make a lower dimensional grid in preparation for local slice operations
******************************************************************************/
inline GridCartesian * MakeLowerDimGrid( GridCartesian * gridHD )
{
int nd{static_cast<int>(gridHD->_ndimension)};
Coordinate latt_size = gridHD->_gdimensions;
latt_size[nd-1] = 1;
Coordinate simd_layout = GridDefaultSimd(nd-1, vComplex::Nsimd());
simd_layout.push_back( 1 );
Coordinate mpi_layout = gridHD->_processors;
mpi_layout[nd-1] = 1;
GridCartesian * gridLD = new GridCartesian(latt_size,simd_layout,mpi_layout,*gridHD);
return gridLD;
}
/*************************************************************************************
Rotate eigenvectors into our phase convention
First component of first eigenvector is real and positive
*************************************************************************************/
inline void RotateEigen(std::vector<LatticeColourVector> & evec)
{
ColourVector cv0;
auto grid = evec[0].Grid();
Coordinate siteFirst(grid->Nd(),0);
peekSite(cv0, evec[0], siteFirst);
auto & cplx0 = cv0()()(0);
if( std::imag(cplx0) == 0 )
std::cout << GridLogMessage << "RotateEigen() : Site 0 : " << cplx0 << " => already meets phase convention" << std::endl;
else {
const auto cplx0_mag = std::abs(cplx0);
const auto phase = std::conj(cplx0 / cplx0_mag);
std::cout << GridLogMessage << "RotateEigen() : Site 0 : |" << cplx0 << "|=" << cplx0_mag << " => phase=" << (std::arg(phase) / 3.14159265) << " pi" << std::endl;
{
// TODO: Only really needed on the master slice
for( int k = 0 ; k < evec.size() ; k++ )
evec[k] *= phase;
if(grid->IsBoss()){
for( int c = 0 ; c < Nc ; c++ )
cv0()()(c) *= phase;
cplx0.imag(0); // This assumes phase convention is real, positive (so I get rid of rounding error)
//pokeSite(cv0, evec[0], siteFirst);
pokeLocalSite(cv0, evec[0], siteFirst);
}
}
}
}
END_MODULE_NAMESPACE
END_HADRONS_NAMESPACE
#endif // Hadrons_MDistil_Distil_hpp_