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127 lines
4.7 KiB
C++
127 lines
4.7 KiB
C++
/*************************************************************************************
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Grid physics library, www.github.com/paboyle/Grid
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Source file: Hadrons/A2AMatrix.hpp
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Copyright (C) 2015-2018
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Author: Antonin Portelli <antonin.portelli@me.com>
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This program is free software; you can redistribute it and/or modify
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it under the terms of the GNU General Public License as published by
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the Free Software Foundation; either version 2 of the License, or
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(at your option) any later version.
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This program is distributed in the hope that it will be useful,
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but WITHOUT ANY WARRANTY; without even the implied warranty of
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MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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GNU General Public License for more details.
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You should have received a copy of the GNU General Public License along
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with this program; if not, write to the Free Software Foundation, Inc.,
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51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
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See the full license in the file "LICENSE" in the top level distribution directory
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*************************************************************************************/
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/* END LEGAL */
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#ifndef A2A_Matrix_hpp_
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#define A2A_Matrix_hpp_
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#include <Hadrons/Global.hpp>
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BEGIN_HADRONS_NAMESPACE
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template <typename T, typename MetadataType>
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class A2AMatrixIo
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{
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public:
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A2AMatrixIo(void) = default;
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A2AMatrixIo(std::string filename, std::string dataname,
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const unsigned int nt, const unsigned int ni,
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const unsigned int nj);
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~A2AMatrixIo(void) = default;
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void initFile(const MetadataType &d, const unsigned int chunkSize);
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void saveBlock(const T *data, const unsigned int i, const unsigned int j,
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const unsigned int blockSizei, const unsigned int blockSizej);
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private:
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std::string filename_, dataname_;
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unsigned int nt_, ni_, nj_;
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};
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template <typename T, typename MetadataType>
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A2AMatrixIo<T, MetadataType>::A2AMatrixIo(std::string filename,
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std::string dataname,
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const unsigned int nt,
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const unsigned int ni,
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const unsigned int nj)
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: filename_(filename), dataname_(dataname)
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, nt_(nt), ni_(ni), nj_(nj)
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{}
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template <typename T, typename MetadataType>
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void A2AMatrixIo<T, MetadataType>::initFile(const MetadataType &d, const unsigned int chunkSize)
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{
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#ifdef HAVE_HDF5
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std::vector<hsize_t> dim = {static_cast<hsize_t>(nt_),
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static_cast<hsize_t>(ni_),
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static_cast<hsize_t>(nj_)},
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chunk = {static_cast<hsize_t>(nt_),
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static_cast<hsize_t>(chunkSize),
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static_cast<hsize_t>(chunkSize)};
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H5NS::DataSpace dataspace(dim.size(), dim.data());
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H5NS::DataSet dataset;
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H5NS::DSetCreatPropList plist;
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// create empty file just with metadata
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{
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Hdf5Writer writer(filename_);
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write(writer, dataname_, d);
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}
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// create the dataset
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Hdf5Reader reader(filename_);
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push(reader, dataname_);
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auto &group = reader.getGroup();
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plist.setChunk(chunk.size(), chunk.data());
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dataset = group.createDataSet("data", Hdf5Type<T>::type(), dataspace, plist);
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#else
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HADRONS_ERROR(Implementation, "all-to-all matrix I/O needs HDF5 library");
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#endif
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}
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template <typename T, typename MetadataType>
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void A2AMatrixIo<T, MetadataType>::saveBlock(const T *data,
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const unsigned int i,
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const unsigned int j,
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const unsigned int blockSizei,
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const unsigned int blockSizej)
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{
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#ifdef HAVE_HDF5
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Hdf5Reader reader(filename_);
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std::vector<hsize_t> count = {nt_, blockSizei, blockSizej},
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offset = {0, static_cast<hsize_t>(i),
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static_cast<hsize_t>(j)},
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stride = {1, 1, 1},
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block = {1, 1, 1};
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H5NS::DataSpace memspace(count.size(), count.data()), dataspace;
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H5NS::DataSet dataset;
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size_t shift;
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push(reader, dataname_);
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auto &group = reader.getGroup();
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dataset = group.openDataSet("data");
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dataspace = dataset.getSpace();
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dataspace.selectHyperslab(H5S_SELECT_SET, count.data(), offset.data(),
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stride.data(), block.data());
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dataset.write(data, Hdf5Type<T>::type(), memspace, dataspace);
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#else
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HADRONS_ERROR(Implementation, "all-to-all matrix I/O needs HDF5 library");
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#endif
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}
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END_HADRONS_NAMESPACE
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#endif // A2A_Matrix_hpp_
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