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Merge branch 'release/3.3' into develop

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Antonin Portelli 2017-11-16 19:33:05 +00:00
commit 0735cd54ce
3 changed files with 25 additions and 3 deletions
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22
Readme.md
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@ -55,6 +55,28 @@ in the `ci-scripts` directory where `<prefix>` is where you want LatAnalyze (and
For a more customised installation, one first needs to generate the build system by running `./bootstrap.sh` in the root directory. Then the library can be built and installed through the usual GNU mantra `./configure <options> && make && make install`. Use `./configure --help` to obtain a list of possible options for `./configure`. Because Eigen expressions rely a lot on inlining and compiler optimisations it is strongly recommended to set the `CXXFLAGS` variable to `-O3 -march=native -mtune=native`. For a more customised installation, one first needs to generate the build system by running `./bootstrap.sh` in the root directory. Then the library can be built and installed through the usual GNU mantra `./configure <options> && make && make install`. Use `./configure --help` to obtain a list of possible options for `./configure`. Because Eigen expressions rely a lot on inlining and compiler optimisations it is strongly recommended to set the `CXXFLAGS` variable to `-O3 -march=native -mtune=native`.
## History ## History
#### v3.3
Additions:
* Sample plot CL utility.
* Infinity as a math constant.
* Option to dump bootstrap sequence while resampling.
* FFT through the GSL.
Changes:
* GSL integrator accepts infinite bounds.
* `latan-sample-combine` accepts mixes of `DSample` and `DMatSample`.
* More general `latan-sample-element` command.
#### v3.2.2
Additions:
* The math interpreter supports `inf` for infinity.
Changes:
* Vector version of `setUnidimData`.
Fixes:
* Variance matrix computation fix.
#### v3.2.1 #### v3.2.1
Fix: Fix:
* Wrong argument number check in `latan-resample` * Wrong argument number check in `latan-resample`

2
configure.ac
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@ -2,7 +2,7 @@
# Initialization # Initialization
AC_PREREQ([2.63]) AC_PREREQ([2.63])
AC_INIT([LatAnalyze],[3.2.1-dev],[antonin.portelli@me.com],[LatAnalyze]) AC_INIT([LatAnalyze],[3.3],[antonin.portelli@me.com],[LatAnalyze])
AC_CONFIG_AUX_DIR([.buildutils]) AC_CONFIG_AUX_DIR([.buildutils])
AC_CONFIG_SRCDIR([lib/Global.cpp]) AC_CONFIG_SRCDIR([lib/Global.cpp])
AC_CONFIG_SRCDIR([utils/sample_read.cpp]) AC_CONFIG_SRCDIR([utils/sample_read.cpp])

4
utils/resample.cpp
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@ -57,7 +57,7 @@ int main(int argc, char *argv[])
opt.addOption("f", "format" , OptParser::OptType::value, true, opt.addOption("f", "format" , OptParser::OptType::value, true,
"output file format", DEF_FMT); "output file format", DEF_FMT);
opt.addOption("d", "dump-boot" , OptParser::OptType::trigger, true, opt.addOption("d", "dump-boot" , OptParser::OptType::trigger, true,
"dump bootstrap sequence", DEF_FMT); "dump bootstrap sequence");
opt.addOption("" , "help" , OptParser::OptType::trigger, true, opt.addOption("" , "help" , OptParser::OptType::trigger, true,
"show this help message and exit"); "show this help message and exit");
parsed = opt.parse(argc, argv); parsed = opt.parse(argc, argv);
@ -127,7 +127,7 @@ int main(int argc, char *argv[])
cout << '\r' << ProgressBar(i + 1, name.size()); cout << '\r' << ProgressBar(i + 1, name.size());
data[name[i]].bin(binSize); data[name[i]].bin(binSize);
if (i == 0) if ((i == 0) and dumpBoot)
{ {
ofstream file(outDirName + "/" + manFileName + ".bootseq"); ofstream file(outDirName + "/" + manFileName + ".bootseq");