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first implementation of HDF5 format

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This commit is contained in:
Antonin Portelli
2015-10-01 00:13:34 +01:00
committed by Antonin Portelli
parent c672c33189
commit 5e3247697d
17 changed files with 932 additions and 70 deletions
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33
utils/resample.cpp
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@ -21,8 +21,8 @@
#include <map>
#include <libgen.h>
#include <unistd.h>
#include <LatAnalyze/AsciiFile.hpp>
#include <LatAnalyze/Dataset.hpp>
#include <LatAnalyze/Io.hpp>
#ifndef DEF_NSAMPLE
#define DEF_NSAMPLE 100
@ -109,15 +109,30 @@ int main(int argc, char *argv[])
}
for (unsigned int i = 0; i < dataFileName.size(); ++i)
{
AsciiFile dataFile;
std::unique_ptr<File> dataFile;
if (extension(dataFileName[i]) == "dat")
{
dataFile.reset(new AsciiFile);
}
else if (extension(dataFileName[i]) == "h5")
{
dataFile.reset(new Hdf5File);
}
else
{
cerr << "error: '" << dataFileName[i];
cerr << "' has an unknown extension" << endl;
return EXIT_FAILURE;
}
cout << '\r' << ProgressBar(i + 1, dataFileName.size());
dataFile.open(dataFileName[i], AsciiFile::Mode::read);
dataFile->open(dataFileName[i], AsciiFile::Mode::read);
for (const string &n: name)
{
data[n][i] = dataFile.read<DMat>(n);
data[n][i] = dataFile->read<DMat>(n);
}
dataFile.close();
dataFile->close();
}
cout << endl;
@ -129,7 +144,7 @@ int main(int argc, char *argv[])
cout << "-- resampling data..." << endl;
if (!stateFileName.empty())
{
state = Io::load<RandGenState, AsciiFile>(stateFileName);
state = Io::load<RandGenState>(stateFileName);
}
for (unsigned int i = 0; i < name.size(); ++i)
{
@ -142,8 +157,8 @@ int main(int argc, char *argv[])
g.setState(state);
}
s = data[name[i]].bootstrapMean(nSample, g);
Io::save<DMatSample, AsciiFile>(s, outDirName + "/" + outFileName,
File::Mode::write, outFileName);
Io::save<DMatSample>(s, outDirName + "/" + outFileName,
File::Mode::write, outFileName);
}
cout << endl;