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option to dump bootstrap sequence while resampling

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This commit is contained in:
Antonin Portelli
2017-10-02 11:54:12 +01:00
parent 3d514ef026
commit 98cf39efda
2 changed files with 32 additions and 1 deletions
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14
utils/resample.cpp
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@ -39,7 +39,7 @@ int main(int argc, char *argv[])
{
// argument parsing ////////////////////////////////////////////////////////
OptParser opt;
bool parsed;
bool parsed, dumpBoot;
random_device rd;
SeedType seed = rd();
string manFileName, nameFileName, outDirName;
@ -56,6 +56,8 @@ int main(int argc, char *argv[])
"output directory", ".");
opt.addOption("f", "format" , OptParser::OptType::value, true,
"output file format", DEF_FMT);
opt.addOption("d", "dump-boot" , OptParser::OptType::trigger, true,
"dump bootstrap sequence", DEF_FMT);
opt.addOption("" , "help" , OptParser::OptType::trigger, true,
"show this help message and exit");
parsed = opt.parse(argc, argv);
@ -75,6 +77,7 @@ int main(int argc, char *argv[])
}
ext = opt.optionValue("f");
outDirName = opt.optionValue("o");
dumpBoot = opt.gotOption("d");
manFileName = opt.getArgs()[0];
nameFileName = opt.getArgs()[1];
@ -124,6 +127,15 @@ int main(int argc, char *argv[])
cout << '\r' << ProgressBar(i + 1, name.size());
data[name[i]].bin(binSize);
if (i == 0)
{
ofstream file(outDirName + "/" + manFileName + ".bootseq");
file << "# bootstrap sequences" << endl;
file << "# manifest file: " << manFileName << endl;
file << "# bin size: " << binSize << endl;
data[name[i]].dumpBootstrapSeq(file, nSample, seed);
}
s = data[name[i]].bootstrapMean(nSample, seed);
Io::save<DMatSample>(s, outDirName + "/" + outFileName,
File::Mode::write, outFileName);