benchmark-quda #3
@ -73,6 +73,8 @@ class Benchmark
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{local[0] * mpi[0], local[1] * mpi[1], local[2] * mpi[2], local[3] * mpi[3]});
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{local[0] * mpi[0], local[1] * mpi[1], local[2] * mpi[2], local[3] * mpi[3]});
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GridCartesian *TmpGrid = SpaceTimeGrid::makeFourDimGrid(
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GridCartesian *TmpGrid = SpaceTimeGrid::makeFourDimGrid(
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latt4, GridDefaultSimd(Nd, vComplex::Nsimd()), GridDefaultMpi());
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latt4, GridDefaultSimd(Nd, vComplex::Nsimd()), GridDefaultMpi());
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Grid::Coordinate shm;
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GlobalSharedMemory::GetShmDims(mpi, shm);
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uint64_t NP = TmpGrid->RankCount();
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uint64_t NP = TmpGrid->RankCount();
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uint64_t NN = TmpGrid->NodeCount();
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uint64_t NN = TmpGrid->NodeCount();
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@ -85,7 +87,9 @@ class Benchmark
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std::cout << GridLogMessage << "* OpenMP threads : " << GridThread::GetThreads()
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std::cout << GridLogMessage << "* OpenMP threads : " << GridThread::GetThreads()
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<< std::endl;
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<< std::endl;
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std::cout << GridLogMessage << "* MPI tasks : " << GridCmdVectorIntToString(mpi)
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std::cout << GridLogMessage << "* MPI layout : " << GridCmdVectorIntToString(mpi)
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<< std::endl;
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std::cout << GridLogMessage << "* Shm layout : " << GridCmdVectorIntToString(shm)
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<< std::endl;
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<< std::endl;
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std::cout << GridLogMessage << "* vReal : " << sizeof(vReal) * 8 << "bits ; "
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std::cout << GridLogMessage << "* vReal : " << sizeof(vReal) * 8 << "bits ; "
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@ -118,6 +122,7 @@ class Benchmark
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for (unsigned int i = 0; i < mpi.size(); ++i)
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for (unsigned int i = 0; i < mpi.size(); ++i)
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{
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{
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tmp["mpi"].push_back(mpi[i]);
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tmp["mpi"].push_back(mpi[i]);
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tmp["shm"].push_back(shm[i]);
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}
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}
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tmp["ranks"] = NP;
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tmp["ranks"] = NP;
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tmp["nodes"] = NN;
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tmp["nodes"] = NN;
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@ -132,6 +137,8 @@ class Benchmark
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Coordinate simd_layout = GridDefaultSimd(Nd, vComplexD::Nsimd());
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Coordinate simd_layout = GridDefaultSimd(Nd, vComplexD::Nsimd());
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Coordinate mpi_layout = GridDefaultMpi();
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Coordinate mpi_layout = GridDefaultMpi();
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Coordinate shm_layout;
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GlobalSharedMemory::GetShmDims(mpi_layout, shm_layout);
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for (int mu = 0; mu < Nd; mu++)
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for (int mu = 0; mu < Nd; mu++)
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if (mpi_layout[mu] > 1)
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if (mpi_layout[mu] > 1)
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@ -143,8 +150,8 @@ class Benchmark
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std::cout << GridLogMessage << "Benchmarking threaded STENCIL halo exchange in "
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std::cout << GridLogMessage << "Benchmarking threaded STENCIL halo exchange in "
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<< nmu << " dimensions" << std::endl;
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<< nmu << " dimensions" << std::endl;
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grid_small_sep();
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grid_small_sep();
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grid_printf("%5s %5s %15s %15s %15s %15s %15s\n", "L", "dir", "payload (B)",
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grid_printf("%5s %5s %7s %15s %15s %15s %15s %15s\n", "L", "dir", "shm",
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"time (usec)", "rate (GB/s/node)", "std dev", "max");
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"payload (B)", "time (usec)", "rate (GB/s/node)", "std dev", "max");
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for (int lat = 16; lat <= maxlat; lat += 8)
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for (int lat = 16; lat <= maxlat; lat += 8)
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{
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{
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@ -173,74 +180,80 @@ class Benchmark
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for (int dir = 0; dir < 8; dir++)
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for (int dir = 0; dir < 8; dir++)
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{
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{
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int mu = dir % 4;
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int mu = dir % 4;
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if (mpi_layout[mu] > 1)
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if (mpi_layout[mu] == 1) // skip directions that are not distributed
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continue;
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bool is_shm = mpi_layout[mu] == shm_layout[mu];
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bool is_partial_shm = !is_shm && shm_layout[mu] != 1;
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std::vector<double> times(Nloop);
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for (int i = 0; i < NWARMUP; i++)
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{
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int xmit_to_rank;
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int recv_from_rank;
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if (dir == mu)
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{
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int comm_proc = 1;
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Grid.ShiftedRanks(mu, comm_proc, xmit_to_rank, recv_from_rank);
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}
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else
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{
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int comm_proc = mpi_layout[mu] - 1;
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Grid.ShiftedRanks(mu, comm_proc, xmit_to_rank, recv_from_rank);
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}
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Grid.SendToRecvFrom((void *)&xbuf[dir][0], xmit_to_rank, (void *)&rbuf[dir][0],
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recv_from_rank, bytes);
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}
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for (int i = 0; i < Nloop; i++)
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{
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{
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std::vector<double> times(Nloop);
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dbytes = 0;
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for (int i = 0; i < NWARMUP; i++)
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double start = usecond();
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int xmit_to_rank;
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int recv_from_rank;
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if (dir == mu)
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{
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{
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int xmit_to_rank;
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int comm_proc = 1;
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int recv_from_rank;
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Grid.ShiftedRanks(mu, comm_proc, xmit_to_rank, recv_from_rank);
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if (dir == mu)
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{
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int comm_proc = 1;
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Grid.ShiftedRanks(mu, comm_proc, xmit_to_rank, recv_from_rank);
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}
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else
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{
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int comm_proc = mpi_layout[mu] - 1;
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Grid.ShiftedRanks(mu, comm_proc, xmit_to_rank, recv_from_rank);
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}
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Grid.SendToRecvFrom((void *)&xbuf[dir][0], xmit_to_rank,
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(void *)&rbuf[dir][0], recv_from_rank, bytes);
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}
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}
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for (int i = 0; i < Nloop; i++)
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else
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{
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{
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int comm_proc = mpi_layout[mu] - 1;
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dbytes = 0;
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Grid.ShiftedRanks(mu, comm_proc, xmit_to_rank, recv_from_rank);
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double start = usecond();
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int xmit_to_rank;
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int recv_from_rank;
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if (dir == mu)
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{
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int comm_proc = 1;
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Grid.ShiftedRanks(mu, comm_proc, xmit_to_rank, recv_from_rank);
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}
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else
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{
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int comm_proc = mpi_layout[mu] - 1;
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Grid.ShiftedRanks(mu, comm_proc, xmit_to_rank, recv_from_rank);
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}
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Grid.SendToRecvFrom((void *)&xbuf[dir][0], xmit_to_rank,
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(void *)&rbuf[dir][0], recv_from_rank, bytes);
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dbytes += bytes;
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double stop = usecond();
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t_time[i] = stop - start; // microseconds
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}
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}
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timestat.statistics(t_time);
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Grid.SendToRecvFrom((void *)&xbuf[dir][0], xmit_to_rank, (void *)&rbuf[dir][0],
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recv_from_rank, bytes);
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dbytes += bytes;
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dbytes = dbytes * ppn;
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double stop = usecond();
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double bidibytes = 2. * dbytes;
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t_time[i] = stop - start; // microseconds
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double rate = bidibytes / (timestat.mean / 1.e6) / 1024. / 1024. / 1024.;
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double rate_err = rate * timestat.err / timestat.mean;
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double rate_max = rate * timestat.mean / timestat.min;
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grid_printf("%5d %5d %15d %15.2f %15.2f %15.1f %15.2f\n", lat, dir, bytes,
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timestat.mean, rate, rate_err, rate_max);
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nlohmann::json tmp;
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nlohmann::json tmp_rate;
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tmp["L"] = lat;
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tmp["dir"] = dir;
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tmp["bytes"] = bytes;
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tmp["time_usec"] = timestat.mean;
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tmp_rate["mean"] = rate;
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tmp_rate["error"] = rate_err;
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tmp_rate["max"] = rate_max;
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tmp["rate_GBps"] = tmp_rate;
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json_results["comms"].push_back(tmp);
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}
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}
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timestat.statistics(t_time);
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dbytes = dbytes * ppn;
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double bidibytes = 2. * dbytes;
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double rate = bidibytes / (timestat.mean / 1.e6) / 1024. / 1024. / 1024.;
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double rate_err = rate * timestat.err / timestat.mean;
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double rate_max = rate * timestat.mean / timestat.min;
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grid_printf("%5d %5d %7s %15d %15.2f %15.2f %15.1f %15.2f\n", lat, dir,
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is_shm ? "yes"
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: is_partial_shm ? "partial"
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: "no",
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bytes, timestat.mean, rate, rate_err, rate_max);
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nlohmann::json tmp;
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nlohmann::json tmp_rate;
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tmp["L"] = lat;
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tmp["dir"] = dir;
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tmp["shared_mem"] = is_shm;
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tmp["partial_shared_mem"] = is_partial_shm;
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tmp["bytes"] = bytes;
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tmp["time_usec"] = timestat.mean;
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tmp_rate["mean"] = rate;
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tmp_rate["error"] = rate_err;
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tmp_rate["max"] = rate_max;
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tmp["rate_GBps"] = tmp_rate;
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json_results["comms"].push_back(tmp);
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}
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}
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for (int d = 0; d < 8; d++)
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for (int d = 0; d < 8; d++)
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{
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{
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