209 lines
7.0 KiB
Bash
Executable File
209 lines
7.0 KiB
Bash
Executable File
#!/usr/bin/env bash
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# shellcheck disable=SC2016
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set -euo pipefail
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gcc_spec='gcc@9.4.0'
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cuda_spec='cuda@11.4.0'
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# hdf5 and fftw depend on OpenMPI, which we install manually. To make sure this
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# dependency is picked by spack, we specify the compiler here explicitly. For
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# most other packages we dont really care about the compiler (i.e. system
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# compiler versus ${gcc_spec})
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hdf5_spec="hdf5@1.10.7+cxx+threadsafe%${gcc_spec}"
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fftw_spec="fftw%${gcc_spec}"
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if (( $# != 1 )); then
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echo "usage: $(basename "$0") <env dir>" 1>&2
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exit 1
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fi
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dir=$1
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cwd=$(pwd -P)
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cd "${dir}"
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dir=$(pwd -P)
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cd "${cwd}"
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# General configuration ########################################################
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# build with 128 tasks
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echo 'config:
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build_jobs: 128
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build_stage:
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- $spack/var/spack/stage
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test_stage: $spack/var/spack/test
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misc_cache: $spack/var/spack/cache' > jobs.yaml
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spack config --scope site add -f jobs.yaml
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rm jobs.yaml
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# add lustre as external package
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echo 'packages:
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lustre:
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externals:
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- spec: "lustre@2.12.6_ddn36"
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prefix: /usr' > external.yaml
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spack config --scope site add -f external.yaml
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rm external.yaml
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# Base compilers ###############################################################
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# configure system base
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spack env create base
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spack env activate base
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spack compiler find --scope site
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# install GCC, CUDA
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spack add ${gcc_spec} ${cuda_spec}
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spack concretize
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spack env depfile -o Makefile.tmp
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make -j128 -f Makefile.tmp
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spack compiler find --scope site
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# Manual compilation of OpenMPI & UCX ##########################################
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# set build directories
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mkdir -p "${dir}"/build
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cd "${dir}"/build
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cuda_path=$(spack find --format "{prefix}" cuda)
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gdrcopy_path=/mnt/lustre/tursafs1/apps/gdrcopy/2.3.1
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# Install ucx 1.12.0
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ucx_url=https://github.com/openucx/ucx/releases/download/v1.12.0/ucx-1.12.0.tar.gz
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echo "-- building UCX from source"
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wget ${ucx_url}
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ucx_ar=$(basename ${ucx_url})
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tar -xvf "${ucx_ar}"
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cd "${ucx_ar%.tar.gz}"
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# ucx gpu build
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mkdir -p build_gpu; cd build_gpu
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../configure --build=x86_64-redhat-linux-gnu --host=x86_64-redhat-linux-gnu \
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--disable-dependency-tracking --prefix="${dir}"/prefix/ucx_gpu \
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--enable-devel-headers --enable-examples --enable-optimizations \
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--with-gdrcopy=${gdrcopy_path} --with-verbs --disable-logging \
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--disable-debug --disable-assertions --enable-cma \
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--with-knem=/opt/knem-1.1.4.90mlnx1/ --with-rdmacm \
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--without-rocm --without-ugni --without-java \
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--enable-compiler-opt=3 --with-cuda="${cuda_path}" --without-cm \
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--with-rc --with-ud --with-dc --with-mlx5-dv --with-dm \
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--enable-mt --without-go LDFLAGS=-L${gdrcopy_path}/lib
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make -j 128
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make install
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cd ..
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# ucx cpu build
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mkdir -p build_cpu; cd build_cpu
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../configure --build=x86_64-redhat-linux-gnu --host=x86_64-redhat-linux-gnu \
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--disable-dependency-tracking --prefix="${dir}"/prefix/ucx_cpu \
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--enable-devel-headers --enable-examples --enable-optimizations \
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--with-verbs --disable-logging --disable-debug \
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--disable-assertions --enable-mt --enable-cma \
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--with-knem=/opt/knem-1.1.4.90mlnx1/ --with-rdmacm \
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--without-rocm --without-ugni --without-java \
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--enable-compiler-opt=3 --without-cm --without-ugni --with-rc \
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--with-ud --with-dc --with-mlx5-dv --with-dm --enable-mt --without-go
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make -j 128
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make install
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cd "${dir}"/build
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# Install openmpi 4.1.1
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ompi_url=https://download.open-mpi.org/release/open-mpi/v4.1/openmpi-4.1.1.tar.gz
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echo "-- building OpenMPI from source"
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wget ${ompi_url}
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ompi_ar=$(basename ${ompi_url})
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tar -xvf "${ompi_ar}"
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cd "${ompi_ar%.tar.gz}"
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export AUTOMAKE_JOBS=128
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./autogen.pl -f
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# openmpi gpu build
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mkdir build_gpu; cd build_gpu
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../configure --prefix="${dir}"/prefix/ompi_gpu --without-xpmem \
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--with-ucx="${dir}"/prefix/ucx_gpu \
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--with-ucx-libdir="${dir}"/prefix/ucx_gpu/lib \
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--with-knem=/opt/knem-1.1.4.90mlnx1/ \
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--enable-mca-no-build=btl-uct \
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--with-cuda="${cuda_path}" --disable-getpwuid \
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--with-verbs --with-slurm --enable-mpi-fortran=all \
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--with-pmix=internal --with-libevent=internal
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make -j 128
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make install
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cd ..
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# openmpi cpu build
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mkdir build_cpu; cd build_cpu
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../configure --prefix="${dir}"/prefix/ompi_cpu --without-xpmem \
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--with-ucx="${dir}"/prefix/ucx_cpu \
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--with-ucx-libdir="${dir}"/prefix/ucx_cpu/lib \
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--with-knem=/opt/knem-1.1.4.90mlnx1/ \
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--enable-mca-no-build=btl-uct --disable-getpwuid \
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--with-verbs --with-slurm --enable-mpi-fortran=all \
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--with-pmix=internal --with-libevent=internal
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make -j 128
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make install
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cd "${dir}"
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ucx_spec_gpu="ucx@1.12.0.GPU%${gcc_spec}"
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ucx_spec_cpu="ucx@1.12.0.CPU%${gcc_spec}"
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openmpi_spec_gpu="openmpi@4.1.1.GPU%${gcc_spec}"
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openmpi_spec_cpu="openmpi@4.1.1.CPU%${gcc_spec}"
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# Add externals to spack
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echo "packages:
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ucx:
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externals:
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- spec: \"${ucx_spec_gpu}\"
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prefix: ${dir}/prefix/ucx_gpu
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- spec: \"${ucx_spec_cpu}\"
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prefix: ${dir}/prefix/ucx_cpu
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buildable: False
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openmpi:
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externals:
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- spec: \"${openmpi_spec_gpu}\"
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prefix: ${dir}/prefix/ompi_gpu
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- spec: \"${openmpi_spec_cpu}\"
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prefix: ${dir}/prefix/ompi_cpu
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buildable: False" > spack.yaml
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spack config --scope site add -f spack.yaml
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rm spack.yaml
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spack env deactivate
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cd "${cwd}"
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# environments #################################################################
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dev_tools=("autoconf" "automake" "libtool" "jq" "git")
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spack env create grid-gpu
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spack env activate grid-gpu
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spack compiler find --scope site
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spack add ${gcc_spec} ${cuda_spec} ${ucx_spec_gpu} ${openmpi_spec_gpu}
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spack add ${hdf5_spec} ${fftw_spec}
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spack add openssl gmp mpfr c-lime "${dev_tools[@]}"
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spack concretize
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spack env depfile -o Makefile.tmp
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make -j128 -f Makefile.tmp
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spack env deactivate
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spack env create grid-cpu
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spack env activate grid-cpu
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spack compiler find --scope site
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spack add ${gcc_spec} ${ucx_spec_cpu} ${openmpi_spec_cpu}
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spack add ${hdf5_spec} ${fftw_spec}
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spack add openssl gmp mpfr c-lime "${dev_tools[@]}"
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spack concretize
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spack env depfile -o Makefile.tmp
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make -j128 -f Makefile.tmp
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spack env deactivate
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# Final setup ##################################################################
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spack clean
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#spack gc -y # "spack gc" tends to get hung up for unknown reasons
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# add more environment variables in module loading
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spack config --scope site add 'modules:prefix_inspections:lib:[LD_LIBRARY_PATH,LIBRARY_PATH]'
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spack config --scope site add 'modules:prefix_inspections:lib64:[LD_LIBRARY_PATH,LIBRARY_PATH]'
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spack config --scope site add 'modules:prefix_inspections:include:[C_INCLUDE_PATH,CPLUS_INCLUDE_PATH,INCLUDE]'
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spack module tcl refresh -y
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