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Merge remote-tracking branch 'upstream/develop' into feature/new-solver-algorithms

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This commit is contained in:
Daniel Richtmann 2017-11-24 10:11:42 +01:00
commit 0afa22747d
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9 changed files with 83 additions and 44 deletions
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12
lib/algorithms/LinearOperator.h
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@ -317,11 +317,23 @@ namespace Grid {
}
virtual RealD Mpc (const Field &in, Field &out) {
Field tmp(in._grid);
Field tmp2(in._grid);
_Mat.Mooee(in,out);
_Mat.Mooee(out,tmp);
_Mat.Meooe(in,out);
_Mat.Meooe(out,tmp2);
return axpy_norm(out,-1.0,tmp2,tmp);
#if 0
//... much prefer conventional Schur norm
_Mat.Meooe(in,tmp);
_Mat.MooeeInv(tmp,out);
_Mat.Meooe(out,tmp);
_Mat.Mooee(in,out);
return axpy_norm(out,-1.0,tmp,out);
#endif
}
virtual RealD MpcDag (const Field &in, Field &out){
return Mpc(in,out);

4
lib/algorithms/iterative/ImplicitlyRestartedLanczos.h
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@ -168,8 +168,8 @@ void basisDeflate(const std::vector<Field> &_v,const std::vector<RealD>& eval,co
template<class Field> class ImplicitlyRestartedLanczosTester
{
public:
virtual int TestConvergence(int j,RealD resid,Field &evec, RealD &eval,RealD evalMaxApprox);
virtual int ReconstructEval(int j,RealD resid,Field &evec, RealD &eval,RealD evalMaxApprox);
virtual int TestConvergence(int j,RealD resid,Field &evec, RealD &eval,RealD evalMaxApprox)=0;
virtual int ReconstructEval(int j,RealD resid,Field &evec, RealD &eval,RealD evalMaxApprox)=0;
};
enum IRLdiagonalisation {

6
lib/algorithms/iterative/SchurRedBlack.h
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@ -90,7 +90,7 @@ namespace Grid {
// Take a matrix and form a Red Black solver calling a Herm solver
// Use of RB info prevents making SchurRedBlackSolve conform to standard interface
///////////////////////////////////////////////////////////////////////////////////////////////////////
// Now make the norm reflect extra factor of Mee
template<class Field> class SchurRedBlackStaggeredSolve {
private:
OperatorFunction<Field> & _HermitianRBSolver;
@ -136,8 +136,8 @@ namespace Grid {
_Matrix.Meooe (tmp,Mtmp); assert( Mtmp.checkerboard ==Odd);
tmp=src_o-Mtmp; assert( tmp.checkerboard ==Odd);
src_o = tmp; assert(src_o.checkerboard ==Odd);
// _Matrix.Mooee(tmp,src_o); // Extra factor of "m" in source
//src_o = tmp; assert(src_o.checkerboard ==Odd);
_Matrix.Mooee(tmp,src_o); // Extra factor of "m" in source from dumb choice of matrix norm.
//////////////////////////////////////////////////////////////
// Call the red-black solver

41
lib/communicator/Communicator_base.cc
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@ -98,7 +98,39 @@ void CartesianCommunicator::GlobalSumVector(ComplexD *c,int N)
#if defined( GRID_COMMS_MPI) || defined (GRID_COMMS_MPIT) || defined (GRID_COMMS_MPI3)
void CartesianCommunicator::AllToAll(int dim,void *in,void *out,uint64_t words,uint64_t bytes)
{
std::vector<int> row(_ndimension,1);
assert(dim>=0 && dim<_ndimension);
// Split the communicator
row[dim] = _processors[dim];
int me;
CartesianCommunicator Comm(row,*this,me);
Comm.AllToAll(in,out,words,bytes);
}
void CartesianCommunicator::AllToAll(void *in,void *out,uint64_t words,uint64_t bytes)
{
// MPI is a pain and uses "int" arguments
// 64*64*64*128*16 == 500Million elements of data.
// When 24*4 bytes multiples get 50x 10^9 >>> 2x10^9 Y2K bug.
// (Turns up on 32^3 x 64 Gparity too)
MPI_Datatype object;
int iwords;
int ibytes;
iwords = words;
ibytes = bytes;
assert(words == iwords); // safe to cast to int ?
assert(bytes == ibytes); // safe to cast to int ?
MPI_Type_contiguous(ibytes,MPI_BYTE,&object);
MPI_Type_commit(&object);
MPI_Alltoall(in,iwords,object,out,iwords,object,communicator);
MPI_Type_free(&object);
}
#endif
#if defined( GRID_COMMS_MPI) || defined (GRID_COMMS_MPIT)
CartesianCommunicator::CartesianCommunicator(const std::vector<int> &processors,const CartesianCommunicator &parent,int &srank)
{
_ndimension = processors.size();
@ -176,6 +208,7 @@ CartesianCommunicator::CartesianCommunicator(const std::vector<int> &processors,
//////////////////////////////////////////////////////////////////////////////////////////////////////
InitFromMPICommunicator(processors,comm_split);
}
//////////////////////////////////////////////////////////////////////////////////////////////////////
// Take an MPI_Comm and self assemble
//////////////////////////////////////////////////////////////////////////////////////////////////////
@ -199,7 +232,7 @@ void CartesianCommunicator::InitFromMPICommunicator(const std::vector<int> &proc
MPI_Cart_coords(communicator,_processor,_ndimension,&_processor_coor[0]);
if ( communicator_base != communicator_world ) {
std::cout << "Cartesian communicator created with a non-world communicator"<<std::endl;
std::cout << "InitFromMPICommunicator Cartesian communicator created with a non-world communicator"<<std::endl;
std::cout << " new communicator rank "<<_processor<< " coor ["<<_ndimension<<"] ";
for(int d=0;d<_processors.size();d++){
@ -211,7 +244,7 @@ void CartesianCommunicator::InitFromMPICommunicator(const std::vector<int> &proc
int Size;
MPI_Comm_size(communicator,&Size);
#ifdef GRID_COMMS_MPIT
#if defined(GRID_COMMS_MPIT) || defined (GRID_COMMS_MPI3)
communicator_halo.resize (2*_ndimension);
for(int i=0;i<_ndimension*2;i++){
MPI_Comm_dup(communicator,&communicator_halo[i]);
@ -220,7 +253,9 @@ void CartesianCommunicator::InitFromMPICommunicator(const std::vector<int> &proc
assert(Size==_Nprocessors);
}
#endif
#if defined( GRID_COMMS_MPI) || defined (GRID_COMMS_MPIT)
CartesianCommunicator::CartesianCommunicator(const std::vector<int> &processors)
{
InitFromMPICommunicator(processors,communicator_world);
@ -229,10 +264,10 @@ CartesianCommunicator::CartesianCommunicator(const std::vector<int> &processors)
#endif
#if !defined( GRID_COMMS_MPI3)
int CartesianCommunicator::NodeCount(void) { return ProcessorCount();};
int CartesianCommunicator::RankCount(void) { return ProcessorCount();};
#endif
#if !defined( GRID_COMMS_MPI3) && !defined (GRID_COMMS_MPIT)
double CartesianCommunicator::StencilSendToRecvFrom( void *xmit,
int xmit_to_rank,

2
lib/communicator/Communicator_base.h
View File

@ -158,7 +158,7 @@ class CartesianCommunicator {
virtual ~CartesianCommunicator();
private:
#if defined (GRID_COMMS_MPI) || defined (GRID_COMMS_MPIT)
#if defined (GRID_COMMS_MPI) || defined (GRID_COMMS_MPIT) || defined (GRID_COMMS_MPI3)
////////////////////////////////////////////////
// Private initialise from an MPI communicator
// Can use after an MPI_Comm_split, but hidden from user so private

32
lib/communicator/Communicator_mpi.cc
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@ -57,7 +57,7 @@ CartesianCommunicator::~CartesianCommunicator()
{
int MPI_is_finalised;
MPI_Finalized(&MPI_is_finalised);
if (communicator && MPI_is_finalised)
if (communicator && !MPI_is_finalised)
MPI_Comm_free(&communicator);
}
@ -196,36 +196,6 @@ void CartesianCommunicator::Broadcast(int root,void* data, int bytes)
root,
communicator);
assert(ierr==0);
}
void CartesianCommunicator::AllToAll(int dim,void *in,void *out,uint64_t words,uint64_t bytes)
{
std::vector<int> row(_ndimension,1);
assert(dim>=0 && dim<_ndimension);
// Split the communicator
row[dim] = _processors[dim];
int me;
CartesianCommunicator Comm(row,*this,me);
Comm.AllToAll(in,out,words,bytes);
}
void CartesianCommunicator::AllToAll(void *in,void *out,uint64_t words,uint64_t bytes)
{
// MPI is a pain and uses "int" arguments
// 64*64*64*128*16 == 500Million elements of data.
// When 24*4 bytes multiples get 50x 10^9 >>> 2x10^9 Y2K bug.
// (Turns up on 32^3 x 64 Gparity too)
MPI_Datatype object;
int iwords;
int ibytes;
iwords = words;
ibytes = bytes;
assert(words == iwords); // safe to cast to int ?
assert(bytes == ibytes); // safe to cast to int ?
MPI_Type_contiguous(ibytes,MPI_BYTE,&object);
MPI_Type_commit(&object);
MPI_Alltoall(in,iwords,object,out,iwords,object,communicator);
MPI_Type_free(&object);
}
///////////////////////////////////////////////////////
// Should only be used prior to Grid Init finished.

17
lib/communicator/Communicator_mpi3.cc
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@ -454,11 +454,15 @@ void CartesianCommunicator::ProcessorCoorFromRank(int rank, std::vector<int> &c
//////////////////////////////////
// Try to subdivide communicator
//////////////////////////////////
CartesianCommunicator::CartesianCommunicator(const std::vector<int> &processors,const CartesianCommunicator &parent)
/*
* Use default in MPI compile
*/
CartesianCommunicator::CartesianCommunicator(const std::vector<int> &processors,const CartesianCommunicator &parent,int &srank)
: CartesianCommunicator(processors)
{
std::cout << "Attempts to split MPI3 communicators will fail until implemented" <<std::endl;
}
CartesianCommunicator::CartesianCommunicator(const std::vector<int> &processors)
{
int ierr;
@ -596,6 +600,17 @@ CartesianCommunicator::CartesianCommunicator(const std::vector<int> &processors)
}
}
};
CartesianCommunicator::~CartesianCommunicator()
{
int MPI_is_finalised;
MPI_Finalized(&MPI_is_finalised);
if (communicator && !MPI_is_finalised) {
MPI_Comm_free(&communicator);
for(int i=0;i< communicator_halo.size();i++){
MPI_Comm_free(&communicator_halo[i]);
}
}
}
void CartesianCommunicator::GlobalSum(uint32_t &u){
int ierr=MPI_Allreduce(MPI_IN_PLACE,&u,1,MPI_UINT32_T,MPI_SUM,communicator);
assert(ierr==0);

11
lib/communicator/Communicator_mpit.cc
View File

@ -55,11 +55,16 @@ void CartesianCommunicator::Init(int *argc, char ***argv) {
CartesianCommunicator::~CartesianCommunicator()
{
if (communicator && !MPI::Is_finalized())
int MPI_is_finalised;
MPI_Finalized(&MPI_is_finalised);
if (communicator && !MPI_is_finalised){
MPI_Comm_free(&communicator);
for(int i=0;i< communicator_halo.size();i++){
MPI_Comm_free(&communicator_halo[i]);
}
}
}
void CartesianCommunicator::GlobalSum(uint32_t &u){
int ierr=MPI_Allreduce(MPI_IN_PLACE,&u,1,MPI_UINT32_T,MPI_SUM,communicator);
assert(ierr==0);
@ -241,7 +246,7 @@ void CartesianCommunicator::StencilSendToRecvFromComplete(std::vector<CommsReque
{
int nreq=waitall.size();
MPI_Waitall(nreq, &waitall[0], MPI_STATUSES_IGNORE);
};
}
double CartesianCommunicator::StencilSendToRecvFrom(void *xmit,
int xmit_to_rank,
void *recv,

2
lib/communicator/Communicator_shmem.cc
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@ -75,6 +75,8 @@ void CartesianCommunicator::Init(int *argc, char ***argv) {
ShmInitGeneric();
}
CartesianCommunicator::~CartesianCommunicator(){}
CartesianCommunicator::CartesianCommunicator(const std::vector<int> &processors,const CartesianCommunicator &parent)
: CartesianCommunicator(processors)
{