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paboyle
2017-11-19 01:39:04 +00:00
parent 69929f20bb
commit 94b8fb5686
4 changed files with 102 additions and 20 deletions
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47
lib/communicator/Communicator_base.cc
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@@ -134,8 +134,18 @@ void CartesianCommunicator::AllToAll(void *in,void *out,uint64_t words,uint64_t
CartesianCommunicator::CartesianCommunicator(const std::vector<int> &processors,const CartesianCommunicator &parent,int &srank)
{
_ndimension = processors.size();
assert(_ndimension = parent._ndimension);
int parent_ndimension = parent._ndimension; assert(_ndimension >= parent._ndimension);
std::vector<int> parent_processor_coor(_ndimension,0);
std::vector<int> parent_processors (_ndimension,1);
// Can make 5d grid from 4d etc...
int pad = _ndimension-parent_ndimension;
for(int d=0;d<parent_ndimension;d++){
parent_processor_coor[pad+d]=parent._processor_coor[d];
parent_processors [pad+d]=parent._processors[d];
}
//////////////////////////////////////////////////////////////////////////////////////////////////////
// split the communicator
//////////////////////////////////////////////////////////////////////////////////////////////////////
@@ -154,9 +164,9 @@ CartesianCommunicator::CartesianCommunicator(const std::vector<int> &processors,
std::vector<int> ssize(_ndimension); // coor of split within parent
for(int d=0;d<_ndimension;d++){
ccoor[d] = parent._processor_coor[d] % processors[d];
scoor[d] = parent._processor_coor[d] / processors[d];
ssize[d] = parent._processors[d] / processors[d];
ccoor[d] = parent_processor_coor[d] % processors[d];
scoor[d] = parent_processor_coor[d] / processors[d];
ssize[d] = parent_processors[d] / processors[d];
}
int crank; // rank within subcomm ; srank is rank of subcomm within blocks of subcomms
// Mpi uses the reverse Lexico convention to us
@@ -166,38 +176,34 @@ CartesianCommunicator::CartesianCommunicator(const std::vector<int> &processors,
MPI_Comm comm_split;
if ( Nchild > 1 ) {
/*
std::cout << GridLogMessage<<"Child communicator of "<< std::hex << parent.communicator << std::dec<<std::endl;
std::cout << GridLogMessage<<" parent grid["<< parent._ndimension<<"] ";
for(int d=0;d<parent._processors.size();d++) std::cout << parent._processors[d] << " ";
for(int d=0;d<parent._ndimension;d++) std::cout << parent._processors[d] << " ";
std::cout<<std::endl;
std::cout << GridLogMessage<<" child grid["<< _ndimension <<"] ";
for(int d=0;d<processors.size();d++) std::cout << processors[d] << " ";
std::cout<<std::endl;
std::cout << GridLogMessage<<" old rank "<< parent._processor<<" coor ["<< _ndimension <<"] ";
for(int d=0;d<processors.size();d++) std::cout << parent._processor_coor[d] << " ";
std::cout << GridLogMessage<<" old rank "<< parent._processor<<" coor ["<< parent._ndimension <<"] ";
for(int d=0;d<parent._ndimension;d++) std::cout << parent._processor_coor[d] << " ";
std::cout<<std::endl;
std::cout << GridLogMessage<<" new split "<< srank<<" scoor ["<< _ndimension <<"] ";
for(int d=0;d<processors.size();d++) std::cout << scoor[d] << " ";
std::cout<<std::endl;
std::cout << GridLogMessage<<" new rank "<< crank<<" coor ["<< _ndimension <<"] ";
for(int d=0;d<processors.size();d++) std::cout << ccoor[d] << " ";
std::cout<<std::endl;
std::cout << GridLogMessage<<" new coor ["<< _ndimension <<"] ";
for(int d=0;d<processors.size();d++) std::cout << parent._processor_coor[d] << " ";
std::cout<<std::endl;
*/
int ierr= MPI_Comm_split(parent.communicator,srank,crank,&comm_split);
assert(ierr==0);
//////////////////////////////////////////////////////////////////////////////////////////////////////
// Declare victory
//////////////////////////////////////////////////////////////////////////////////////////////////////
/*
std::cout << GridLogMessage<<"Divided communicator "<< parent._Nprocessors<<" into "
<< Nchild <<" communicators with " << childsize << " ranks"<<std::endl;
*/
} else {
comm_split=parent.communicator;
srank = 0;
@@ -207,6 +213,15 @@ CartesianCommunicator::CartesianCommunicator(const std::vector<int> &processors,
// Set up from the new split communicator
//////////////////////////////////////////////////////////////////////////////////////////////////////
InitFromMPICommunicator(processors,comm_split);
std::cout << " ndim " <<_ndimension<<" " << parent._ndimension << std::endl;
for(int d=0;d<processors.size();d++){
std::cout << d<< " " << _processor_coor[d] <<" " << ccoor[d]<<std::endl;
}
for(int d=0;d<processors.size();d++){
assert(_processor_coor[d] == ccoor[d] );
}
}
//////////////////////////////////////////////////////////////////////////////////////////////////////

2
lib/communicator/Communicator_mpi3.cc
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@@ -606,7 +606,7 @@ CartesianCommunicator::~CartesianCommunicator()
MPI_Finalized(&MPI_is_finalised);
if (communicator && MPI_is_finalised) {
MPI_Comm_free(&communicator);
for(int i=0;i< communicator_halo.size();i++){
for(int i=0;i<communicator_halo.size();i++){
MPI_Comm_free(&communicator_halo[i]);
}
}

67
lib/lattice/Lattice_transfer.h
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@@ -757,7 +757,74 @@ void precisionChange(Lattice<VobjOut> &out, const Lattice<VobjIn> &in){
// NB: Easiest to programme if keep in lex order.
//
/////////////////////////////////////////////////////////
/*
[0,0,0,0,0] S {V<4>{V<3>{(0,0),(0,0),(0,0)},V<3>{(0,0),(0,0),(0,0)},V<3>{(0,0),(0,0),(0,0)},V<3>{(0,0),(0,0),(0,0)}}}
[0,0,0,0,1] S {V<4>{V<3>{(1,0),(1,0),(1,0)},V<3>{(1,0),(1,0),(1,0)},V<3>{(1,0),(1,0),(1,0)},V<3>{(1,0),(1,0),(1,0)}}}
[0,0,0,0,2] S {V<4>{V<3>{(4,0),(4,0),(4,0)},V<3>{(4,0),(4,0),(4,0)},V<3>{(4,0),(4,0),(4,0)},V<3>{(4,0),(4,0),(4,0)}}}
[0,0,0,0,3] S {V<4>{V<3>{(5,0),(5,0),(5,0)},V<3>{(5,0),(5,0),(5,0)},V<3>{(5,0),(5,0),(5,0)},V<3>{(5,0),(5,0),(5,0)}}}
[0,0,0,0,4] S {V<4>{V<3>{(2,0),(2,0),(2,0)},V<3>{(2,0),(2,0),(2,0)},V<3>{(2,0),(2,0),(2,0)},V<3>{(2,0),(2,0),(2,0)}}}
[0,0,0,0,5] S {V<4>{V<3>{(3,0),(3,0),(3,0)},V<3>{(3,0),(3,0),(3,0)},V<3>{(3,0),(3,0),(3,0)},V<3>{(3,0),(3,0),(3,0)}}}
[0,0,0,0,6] S {V<4>{V<3>{(6,0),(6,0),(6,0)},V<3>{(6,0),(6,0),(6,0)},V<3>{(6,0),(6,0),(6,0)},V<3>{(6,0),(6,0),(6,0)}}}
[0,0,0,0,7] S {V<4>{V<3>{(7,0),(7,0),(7,0)},V<3>{(7,0),(7,0),(7,0)},V<3>{(7,0),(7,0),(7,0)},V<3>{(7,0),(7,0),(7,0)}}}
[0,0,0,0,8] S {V<4>{V<3>{(8,0),(8,0),(8,0)},V<3>{(8,0),(8,0),(8,0)},V<3>{(8,0),(8,0),(8,0)},V<3>{(8,0),(8,0),(8,0)}}}
[0,0,0,0,9] S {V<4>{V<3>{(9,0),(9,0),(9,0)},V<3>{(9,0),(9,0),(9,0)},V<3>{(9,0),(9,0),(9,0)},V<3>{(9,0),(9,0),(9,0)}}}
[0,0,0,0,10] S {V<4>{V<3>{(12,0),(12,0),(12,0)},V<3>{(12,0),(12,0),(12,0)},V<3>{(12,0),(12,0),(12,0)},V<3>{(12,0),(12,0),(12,0)}}}
[0,0,0,0,11] S {V<4>{V<3>{(13,0),(13,0),(13,0)},V<3>{(13,0),(13,0),(13,0)},V<3>{(13,0),(13,0),(13,0)},V<3>{(13,0),(13,0),(13,0)}}}
[0,0,0,0,12] S {V<4>{V<3>{(10,0),(10,0),(10,0)},V<3>{(10,0),(10,0),(10,0)},V<3>{(10,0),(10,0),(10,0)},V<3>{(10,0),(10,0),(10,0)}}}
[0,0,0,0,13] S {V<4>{V<3>{(11,0),(11,0),(11,0)},V<3>{(11,0),(11,0),(11,0)},V<3>{(11,0),(11,0),(11,0)},V<3>{(11,0),(11,0),(11,0)}}}
[0,0,0,0,14] S {V<4>{V<3>{(14,0),(14,0),(14,0)},V<3>{(14,0),(14,0),(14,0)},V<3>{(14,0),(14,0),(14,0)},V<3>{(14,0),(14,0),(14,0)}}}
[0,0,0,0,15] S {V<4>{V<3>{(15,0),(15,0),(15,0)},V<3>{(15,0),(15,0),(15,0)},V<3>{(15,0),(15,0),(15,0)},V<3>{(15,0),(15,0),(15,0)}}}
Process decomp
[A(0 1) A(2 3) B(0 1) B(2 3)] [ A(4 5) A(6 7) B(4 5) B(6 7)] [ A(8 9) A(10 11) B(8 9) B(10 11)] [A(12 13) A(14 15) B(12 13) B(14 15)]
A2A(Full)
-- divides M*fL into fP segments of size M*fL/fP = fL/sP
-- total is fP * fL/sP = M * fL
A(0 1) A(4 5) A(8 9) A(12 13)
A(2 3) A(6 7) A(10 11) A(14 15)
B(0 1) B(4 5) B(8 9) B(12 13)
B(2 3) B(6 7) B(10 11) B(14 15)
A2A(Split)
A(0 1) A(4 5) A(2 3) A(6 7)
A(8 9) A(12 13) A(10 11) A(14 15)
B(0 1) B(2 3) B(4 5) B(6 7)
B(8 9) B(10 11) B(12 13) B(14 15)
--------------------
-- General case
--------------------
G global lattice
fP - procs
sP - Procs in split grid
M - subdivisions/vectors - M*sP = fP ** constraint 1
fL = G/fP per node (full)
sL = G/sP per node split
[ G * M ] total = G*fP/sP.
[ Subdivide fL*M by fP => fL *M / fP = fL/fP *fP/sP = fL/sP ]
--------------------
-- 1st A2A chunk is fL*M/fP = G/fP *fP/sP /fP = fL/sP
-- Let cL = fL/sP chunk. ( Divide into fP/sP = M chunks )
-- node 0 1st cL of node 0,1,... fP-1 ; vector 0
-- node 1 2nd cL of node 0,1,... fP-1
-- node 2 3nd cL of node 0,1,... fP-1
-- node 3 4th cL of node 0,1,... fP-1
... when node > sP get vector 1 etc...
-- 2nd A2A (over sP nodes; subdivide the fP into sP chunks of M)
-- node 0 1st cL of node 0M..(1M-1); 2nd cL of node 0M..(1M-1))..
-- node 1 1st cL of node 1M..(2M-1); 2nd cL of node 1M..(2M-1)..
-- node 2 1st cL of node 2M..(3M-1); 2nd cL of node 2M..(3M-1)..
-- node 3 1st cL of node 3M..(3M-1); 2nd cL of node 2M..(3M-1)..
--
-- Insert correctly
*/
template<class Vobj>
void Grid_split(std::vector<Lattice<Vobj> > & full,Lattice<Vobj> & split)
{

6
tests/solver/Test_dwf_mrhs_cg_mpi.cc
View File

@@ -95,7 +95,7 @@ int main (int argc, char ** argv)
FermionField tmp(FGrid);
for(int s=0;s<nrhs;s++) result[s]=zero;
#undef LEXICO_TEST
#define LEXICO_TEST
#ifdef LEXICO_TEST
{
LatticeFermion lex(FGrid); lex = zero;
@@ -121,7 +121,7 @@ int main (int argc, char ** argv)
random(pRNG5,src[s]);
tmp = 100.0*s;
src[s] = (src[s] * 0.1) + tmp;
std::cout << " src ]"<<s<<"] "<<norm2(src[s])<<std::endl;
std::cout << " src ["<<s<<"] "<<norm2(src[s])<<std::endl;
}
#endif
@@ -189,7 +189,7 @@ int main (int argc, char ** argv)
MdagMLinearOperator<DomainWallFermionR,FermionField> HermOp(Ddwf);
MdagMLinearOperator<DomainWallFermionR,FermionField> HermOpCk(Dchk);
ConjugateGradient<FermionField> CG((1.0e-5),10000);
ConjugateGradient<FermionField> CG((1.0e-2),10000);
s_res = zero;
CG(HermOp,s_src,s_res);