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228 Commits

Author SHA1 Message Date
Guido Cossu
8c540333d5 Merge branch 'develop' into feature/hmc_generalise 2017-04-05 14:41:04 +01:00
paboyle
9cbcdd65d7 No random device seed 2017-04-02 00:26:57 +09:00
paboyle
e099dcdae7 Merge branch 'develop' into feature/bgq-asm 2017-02-23 00:25:29 +00:00
paboyle
4e7ab3166f Refactoring header layout 2017-02-22 18:09:33 +00:00
paboyle
3ae92fa2e6 Global changes to parallel_for structure. 
Move the comms flags to more sensible names
 2017-02-21 05:24:27 -05:00
Guido Cossu
e0571c872b Merge branch 'develop' into feature/hmc_generalise 2017-02-09 16:12:00 +00:00
Christopher Kelly
c94133af49 Added iteration reporting to CG and mixed CG 
Added ability to manually change the initial CG inner tolerance in mixed CG
Added .hpp files to filelist script
 2017-02-02 17:04:42 -05:00
Antonin Portelli
fad743fbb1 Build system sanity check: corrected several headers not in the <Grid/*> format 2017-01-26 17:00:41 -08:00
Guido Cossu
0bd296dda4 Adding check of the Dag part in the benchmark 2016-12-14 03:15:09 +00:00
Guido Cossu
2fb92dbc6e Cleaning up previous debug lines 2016-12-13 07:53:43 +00:00
Guido Cossu
5c74b6028b Commit for debugging, lot of IO 2016-12-13 06:35:30 +00:00
Guido Cossu
01480da0a8 Merge branch 'develop' into feature/hmc_generalise 2016-12-05 05:10:27 +00:00
Antonin Portelli
97cddda49e Merge branch 'feature/gen-simd' into feature/doxygen 
# Conflicts:
#	Makefile.am
#	configure.ac
 2016-11-19 13:11:13 +01:00
Guido Cossu
a783282b8b Merge branch 'develop' into feature/hmc_generalise 2016-11-10 18:13:07 +00:00
paboyle
33dc1f51b5 Final sign off commits from Cori-1 2016-11-09 04:11:03 -08:00
azusayamaguchi
96ba42a297 omm buf 2016-11-04 22:47:25 +00:00
Antonin Portelli
e74417ca12 big build system polish 2016-10-31 16:31:27 +00:00
Guido Cossu
977b0a6dd9 Merge branch 'develop' into feature/hmc_generalise 2016-10-20 17:04:41 +01:00
Antonin Portelli
cb02b7088f Merge branch 'develop' into feature/doxygen 
# Conflicts:
#	configure.ac
 2016-10-09 13:35:44 +01:00
Guido Cossu
2e453dfbf5 Added some instrumentation to benchmark the force computation 2016-10-06 17:52:45 +01:00
Guido Cossu
c065e454c3 Adding Binrary IO, untested 2016-10-06 10:12:11 +01:00
Antonin Portelli
b1cfb4d661 first try at a nicer Doxygen implementation 2016-08-05 15:29:18 +01:00
Antonin Portelli
e9f30cab2c first working version for the new build system 2016-07-30 17:53:18 +01:00
paboyle
f4dd5062d7 Merge branch 'develop' of https://github.com/paboyle/Grid into develop 2016-07-15 19:26:06 +01:00
paboyle
a0676beeb1 Open up dependency on Eigen and FFTW 2016-07-07 22:31:07 +01:00
Christopher Kelly
c5106d0c03 Bugfix 2016-07-07 16:06:30 -04:00
Christopher Kelly
25fafa9a89 Comment 2016-07-06 16:19:41 -04:00
Christopher Kelly
85ed8175cb Implemented mixed precision CG. Fixed filelist to exclude lib/Old directory and include Config.h. 2016-07-06 15:57:04 -04:00
Christopher Kelly
15f22425c8 Added option to prevent CG from exiting when it fails to converge 2016-07-06 14:50:01 -04:00
Guido Cossu
5e02392f9c Fixed compilation error for benchmark_dwf 
Some parts were assuming floating point precision
 2016-06-20 12:30:51 +01:00
Antonin Portelli
fa59789580 ConjugateGradient: cleaner output 2016-05-01 18:29:20 -07:00
Antonin Portelli
92c2c7d3b5 SchurRedBlackDiagMooeeSolve: fix: guess was not initialised from input 2016-05-01 16:07:55 -07:00
paboyle
c79ea0dcef Fixingn IMCI 2016-04-22 21:52:54 -07:00
Christopher Kelly
af9c8d1372 -Checkerboard fixes for Lanczos 2016-04-06 13:50:56 -04:00
paboyle
340428a1fe Eigen fixes and HDCR work 2016-03-30 00:16:02 -07:00
azusa
f54e0ec9bd Try lanczos to set up hdcr subspace 2016-03-17 10:36:16 +00:00
paboyle
3920b2c0ab HDCR updates 2016-03-16 02:29:58 -07:00
paboyle
2733c4b93c hdcr updates 2016-03-16 02:29:37 -07:00
paboyle
090e7aa930 Merge remote-tracking branch 'origin/chulwoo-dec12-2015' 
Merge Chulwoo's Lanczos related improvements.
Merge Nd!=4 fixes for pure gauge HMC from Evan.
 2016-03-08 09:55:14 +00:00
paboyle
2dce9c3cff HDCR running on 16^3 with 2x-3x speed up. 2016-03-08 01:01:50 -08:00
paboyle
dc72293398 More timing info 2016-03-06 10:46:55 -08:00
paboyle
ff129d9ad9 Redundant operations removed 2016-03-02 07:02:37 -08:00
Jung
9f0d9ade68 Added configure flag for LAPACK. Tested ImplicitlyRestartedLanczos::calc() 
Checking in before cleaning up
 2016-02-20 02:50:32 -05:00
Peter Boyle
c9fadf97a5 Simplify the compressor interface again. 2016-02-17 18:16:45 -06:00
Jung
bd84c23298 definitions reconciled. 2016-01-25 16:30:59 -05:00
Jung
411ac49dd7 GparityWilsonTM typedef added. Not yet tested 
Conflicts:
	configure
	lib/qcd/action/fermion/WilsonKernels.h
 2016-01-25 01:36:28 -05:00
Jung
b8fb05a422 Addtional routines for Lanczos (SYM2, Chebyshef).. 2016-01-25 01:26:25 -05:00
Jung
5c57d4f403 Merge branch 'master' of https://github.com/paboyle/Grid into scidac1_2 
Conflicts:
	lib/qcd/action/fermion/WilsonKernels.h
 2016-01-11 11:36:45 -05:00
paboyle
d19321dfde Overlap comms compute changes 2016-01-10 19:20:16 +00:00
Jung
5924e5a562 Merge branch 'master' of https://github.com/paboyle/Grid into scidac1_2 
Conflicts:
	configure
	lib/qcd/action/Actions.h
	lib/qcd/action/fermion/WilsonKernels.h
 2016-01-06 03:44:57 -05:00
paboyle
aae8bf31a7 Global edit adding copyright and license info to every source file. 2016-01-02 14:51:32 +00:00
paboyle
841a37f941 Fix to WilsonCompressor that fixes a bug in comms phase due to the sign change on gamma 
matrix in hopping term.
Add logging of time spent in CG.
 2015-12-29 23:49:41 +00:00
paboyle
08edbb5cbe HMC bit repro across checkpoints. Fixed parallel RNG issue with threading. 
Conclusion: c++11 distributions not thread safe and must us distinct dist as well as distinct engine
per site. Makes sense when you think of box muller. Also added a reset of dist on fill to ensure
repro across checkpoints.
 2015-12-22 08:54:40 +00:00
paboyle
8c9010d0f4 Isnan check on guess and convergence assert on result 2015-12-21 15:29:46 +00:00
Jung
fb81acca3c Merge branch 'master' of https://github.com/paboyle/Grid 2015-12-03 12:11:10 -05:00
paboyle
93356fd246 No compile fixes on gcc/Cray 2015-11-29 03:14:44 -08:00
paboyle
ca42fe6d32 Merge branch 'master' of github.com:paboyle/Grid 
Merge done
Conflicts:
	lib/serialisation/XmlIO.h
	tests/Test_stencil.cc
 2015-11-28 17:03:43 -08:00
paboyle
d875c2bd39 More verbose useful 2015-11-28 16:54:19 -08:00
paboyle
cc32ba615a Verbose changes 2015-11-28 16:53:54 -08:00
Peter Boyle
11cf0f08f3 This file is not yet debugged. 2015-11-29 00:32:45 +00:00
Peter Boyle
5d854c869c Stencil interface changes 2015-11-06 05:22:33 -06:00
Peter Boyle
3b7576ad53 Switch off for now 2015-11-04 05:13:29 -06:00
Peter Boyle
83afb2e26a Poly support for lanczos 2015-10-09 00:43:21 +02:00
Peter Boyle
2d95dac6b6 Lanczos untested/partially tested additions. In middle of shake out but at least compiles 2015-10-09 00:40:25 +02:00
Peter Boyle
5ef42add2d Changes to remove warnings under icc; disambiguate AVX512 from IMCI correctly 
and drop swizzles in AVX512. Don't know why these compiled.
 2015-09-23 05:23:45 -07:00
Peter Boyle
2f38ebc446 Reintroducing the hand unrolled loops 2015-09-08 17:45:30 +01:00
Peter Boyle
fc160eeccc Added one flavour rational ratios (unprec) 2015-08-19 04:58:40 +01:00
Peter Boyle
a842a6c94d One flavour rational unprec added; untested but does compile. 
Moving param structs into a single header for later connection to file I/O using
macromagic.h
 2015-08-18 14:40:08 +01:00
Peter Boyle
7d3512ab21 Gparity valence test now working. 
Interface in FermionOperator will change a lot in future
 2015-08-14 00:01:04 +01:00
Peter Boyle
69ce87fbe4 Preconditioned conjugate residual 2015-08-11 06:24:53 +01:00
Peter Boyle
a01aa156b9 Adding components for even odd decomposed determinant in HMC. 
dH not yet conserved, so something wrong in the eo force code still
 2015-08-07 08:37:15 +01:00
Peter Boyle
1d67d29183 Jackson smoothed chebyshev and (untested) completion of force terms 
for Cayley, Partial and Cont fraction dwf and overlap.
have even odd and unprec forces.
 2015-08-01 05:58:35 +09:00
Peter Boyle
4fe110bd07 Two flavour HMC for Wilson/Wilson is conserving energy. 
Still to check plaq and <e(-dH)>, but nevertheless this is
progress
 2015-07-29 17:53:39 +09:00
Peter Boyle
4cc2ef84d3 Committing incomplete work for parameter file I/O. 
MacroMagic.h is central. Guido and I plan to move
over to generating virtual (XML, JSON, YAML, text, binary) encoding
from macro based system.
 2015-07-27 18:32:28 +09:00
Peter Boyle
1d70a45d84 Merge branch 'master' of https://github.com/paboyle/Grid 2015-07-24 01:33:19 +09:00
Peter Boyle
d1afebf71e Sizable improvement in multigrid for unsquared. 
6000 matmuls CG unprec
2000 matmuls CG prec (4000 eo muls)
1050 matmuls PGCR on 16^3 x 32 x 8 m=.01

Substantial effort on timing and logging infrastructure
 2015-07-24 01:31:13 +09:00
paboyle
f62f1699cb Bug work around 2015-07-21 22:49:36 -07:00
Peter Boyle
4e94ddad46 Merge 2015-07-21 13:56:22 +09:00
Peter Boyle
5ac625f716 No changes shown on git diff 2015-07-21 13:54:09 +09:00
Peter Boyle
0007669381 Printing change 2015-07-21 13:51:56 +09:00
Peter Boyle
a700933611 More info 2015-07-21 13:48:57 +09:00
Peter Boyle
c515d069cd Tweaks to subspace set up to put in g5 r5 hermiticity 2015-07-21 12:13:03 +09:00
Peter Boyle
8a7b7f1e2b verbose 2015-07-21 12:12:29 +09:00
paboyle
e3456bf559 Temporarily disable gmp dependency simply because Cray XC30's I'm benchmarking 
have a downlevel gmp version that chokes on ::max_align_t where gmp had a
bug as far as I recall.
 2015-07-01 22:47:33 +01:00
Peter Boyle
03ca506a3d Big commit fixing nocompiles in defective C++11 compilers (gcc, icpc). stared getting to 
near the bleeding edge I guess
 2015-06-30 15:17:27 +01:00
Peter Boyle
8eaf657f95 VPGCR updates 2015-06-30 15:02:27 +01:00
Peter Boyle
a17684ebe2 Some small steps towards a multigrid 2015-06-22 12:49:44 +01:00
Azusa Yamaguchi
fd1a8abcd1 Abstract preconditioner 2015-06-21 11:03:55 +01:00
Azusa Yamaguchi
3b4118f33e Variable preconditioned GCR with restarting. 
Orthogonalisation depth and restart frequency is controllable via constructor
 2015-06-21 10:58:46 +01:00
Peter Boyle
960f29c0b1 Will start this as a two level algorithm 2015-06-20 22:24:21 +01:00
Peter Boyle
fb07ee5781 HDCG but this is not complete and placeholder for later completion 2015-06-20 22:23:57 +01:00
Peter Boyle
b4a6dbfa65 Patches for beginnings of an overlap multigrid 2015-06-20 22:22:56 +01:00
Jung
ee9ecb6115 Fixing missing max_align_t error 2015-06-19 00:56:24 -04:00
Azusa Yamaguchi
250cb00c42 WHere should always have precisely matching types in ET system 2015-06-14 01:07:58 +01:00
Peter Boyle
0784bbc4bf Remove extra layers of checks now it works 2015-06-09 22:43:41 +01:00
Peter Boyle
6fb36c8a51 Starting to use 2015-06-09 22:38:13 +01:00
Peter Boyle
2e6986892a Debugged finally. A silly mistake in permute cost me a day of debug. 2015-06-09 22:37:21 +01:00
Peter Boyle
a73a1c1bc1 Merge branch 'master' of https://github.com/paboyle/Grid 
Conflicts:
	lib/Make.inc
 2015-06-09 10:27:10 +01:00
Peter Boyle
1e5b015ee3 Some unary ops and coarse grid support 2015-06-09 10:26:19 +01:00
neo
48bf4878c1 Experimental support for ARM 2015-06-09 15:46:21 +09:00
Peter Boyle
3111f50f2f Merge branch 'master' of https://github.com/paboyle/Grid 
Conflicts:
	lib/Make.inc
	tests/Make.inc
	tests/Test_remez.cc
 2015-06-08 12:08:09 +01:00
Peter Boyle
d6f1ddf99c Conjugate residual algorithm; some more unary functions 2015-06-08 12:04:59 +01:00
Peter Boyle
5a3bc5250e Prep for multigrid 2015-06-08 12:02:53 +01:00
Azusa Yamaguchi
8688ff8b3a multishift conjugate gradient added and a strong test: take a diagonal 
but non-identity matrix
l1 0  0  0 ....
0  l2 0  0 ....
0  0  l3 0 ...
.  .   .
.  .   .
.  .   .

And apply the multishift CG to it. Sum the poles and residues.
Insist that this be the same as the exactly taken square root
where l1,l2,l3 >= 0.
 2015-06-08 11:52:44 +01:00
Peter Boyle
1a05882d7c Conjugate residual added 2015-06-05 18:16:25 +01:00
Peter Boyle
7f6304fac3 Rework the linop support to get different forms of red black schur solver 
Moo on diag, or MooInv Moe MeeInv Meo
 2015-06-05 10:17:10 +01:00
Azusa Yamaguchi
58a4f32298 merge to the head 2015-06-05 10:15:31 +01:00
Peter Boyle
b1b412f63c comment improvement 2015-06-05 05:31:27 +01:00
Peter Boyle
63a61fcc2a PartialFraction Hw with Zolo and Tanh approx converged under CG and passed EO breakdown 
and hermiticity tests.
 2015-06-04 13:28:37 +01:00
Peter Boyle
3845f267cb Domain wall fermions now invert ; have the basis set up for 
Tanh/Zolo * (Cayley/PartFrac/ContFrac) * (Mobius/Shamir/Wilson)
Approx        Representation               Kernel.

All are done with space-time taking part in checkerboarding, Ls uncheckerboarded

Have only so far tested the Domain Wall limit of mobius, and at that only checked
that it
i)  Inverts
ii) 5dim DW == Ls copies of 4dim D2
iii) MeeInv Mee == 1
iv) Meo+Mee+Moe+Moo == M unprec.
v) MpcDagMpc is hermitan
vi) Mdag is the adjoint of M between stochastic vectors.

That said, the RB schur solve, RB MpcDagMpc solve, Unprec solve
all converge and the true residual becomes small; so pretty good tests.
 2015-06-02 16:57:12 +01:00
Peter Boyle
5644ab1e19 Large scale change to support 5d fermion formulations. 
Have 5d replicated wilson with 4d gauge working and matrix regressing
to Ls copies of wilson.
 2015-05-31 15:09:02 +01:00
Peter Boyle
624c0ac3ef Updates now schur red black solver working 2015-05-25 13:43:58 +01:00
Peter Boyle
ac99832d21 Herm op 2015-05-25 13:42:36 +01:00
Peter Boyle
d0d41b8bce Didn't like a print statement 2015-05-21 06:36:15 +01:00
Peter Boyle
221902a882 Merging in 
Merge branch 'master' of https://github.com/paboyle/Grid
 2015-05-19 21:30:13 +01:00
Peter Boyle
a21036e69a Reworking to keep intel compiler happy 2015-05-19 21:29:07 +01:00
Peter Boyle
fde7f8d6b9 Merged 
Merge branch 'master' of https://github.com/coppolachan/Grid into coppolachan-master

Conflicts:
	lib/simd/Grid_vector_types.h
 2015-05-19 15:05:07 +01:00
Peter Boyle
4dba8522a1 Got unpreconditioned conjugate gradient to run and converge on a random (uniform random, 
not even SU(3) for now) gauge field. Convergence history is correctly indepdendent of decomposition
on 1,2,4,8,16 mpi tasks.
Found a couple of simd bugs which required fixed and enhanced the Grid_simd.cc test suite.
Implemented the Mdag, M, MdagM, Meooe Mooee schur type stuff in the wilson dop.
 2015-05-19 13:57:35 +01:00
neo
74e91cd925 Partial implementation of the vector types SIMD 
Implementing SSE4 now
A systematic series of tests must be written.
 2015-05-19 17:21:17 +09:00
neo
baa382f055 Added check of mpfr and gmp at configure time 
It generates automatically the linker flags or complains if not found.
 2015-05-19 13:54:55 +09:00
Peter Boyle
05f1419df4 Merge branch 'master' of https://github.com/coppolachan/Grid into coppolachan-master 
Conflicts:
	lib/algorithms/approx/bigfloat.h
 2015-05-18 16:34:21 +01:00
Peter Boyle
17835c6f42 Remez tested 2015-05-18 12:09:25 +01:00
neo
99aecf1f2e Minor modification to the configure.ac 
Enables silent rules (use make V=1 to override)
Prints a summary after configure is completed
 2015-05-18 17:15:14 +09:00
neo
b4cd37276b Corrected some compilation errors (zolotarev.h) and SSE4 vsplat and conj to make cshift test pass. 2015-05-18 16:48:14 +09:00
Peter Boyle
11cb3e9a01 Getting closer to having a wilson solver... introducing a first and untested 
cut at Conjugate gradient. Also copied in Remez, Zolotarev, Chebyshev from
Mike Clark, Tony Kennedy and my BFM package respectively since we know we will
need these. I wanted the structure of

algorithms/approx
algorithms/iterative

etc.. to start taking shape.
 2015-05-18 07:47:05 +01:00
Peter Boyle
7992346190 Working towards solvers 2015-05-17 00:19:03 +01:00
Peter Boyle
bf7ab0da7a Updating preparing for solvers etc.. 2015-05-16 23:35:08 +01:00
Peter Boyle
f1255197c2 Linear op added 2015-05-13 11:25:34 +01:00