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Author SHA1 Message Date
Jung
5c57d4f403 Merge branch 'master' of https://github.com/paboyle/Grid into scidac1_2 
Conflicts:
	lib/qcd/action/fermion/WilsonKernels.h
 2016-01-11 11:36:45 -05:00
Jung
5924e5a562 Merge branch 'master' of https://github.com/paboyle/Grid into scidac1_2 
Conflicts:
	configure
	lib/qcd/action/Actions.h
	lib/qcd/action/fermion/WilsonKernels.h
 2016-01-06 03:44:57 -05:00
paboyle
c99d748da6 Timing reports in benchmarks now reflect the asynch comms thread statistics 2016-01-04 14:42:16 +00:00
paboyle
02452afd36 Optional overlap of comms with compute 2016-01-04 14:18:40 +00:00
paboyle
331768dcff Added overlap comms compute mode 2016-01-03 01:38:11 +00:00
paboyle
4aac345bea Updated logging to colour code according to message type 2016-01-02 17:21:14 +00:00
paboyle
15c0022042 GPLv2 clarified, and copyright message and banner in Init function. 
Color is just showing off....
 2016-01-02 15:22:30 +00:00
paboyle
aae8bf31a7 Global edit adding copyright and license info to every source file. 2016-01-02 14:51:32 +00:00
paboyle
1e68b1c1bd Create a benign default for gparity twists 2016-01-02 14:06:53 +00:00
paboyle
491a708225 Twist params set up correctly in gparity even odd 2f DWF + Wilson HMC test 2016-01-02 14:02:41 +00:00
paboyle
5a80930dd2 Charge conjugation boundary conditions for gauge fields implemented as a policy 
class, changing the nature of covariant Cshifts used in
plaquettes, rectangles and staples.

As a result same code is used for the plaq and rect action independent of the BC type.

Should probably isolate the BC in a separate class that Gimpl takes as a template param.
Do the same with smearing policies.

This would then allow composition of BC with smearing etc....
 2016-01-02 13:37:25 +00:00
paboyle
145a295231 Bug fix for stencil with large shifts (3+), would be important to naik term for example but did not 
impact Wilson based nearest neighbour stencils.
 2015-12-30 19:29:48 +00:00
paboyle
841a37f941 Fix to WilsonCompressor that fixes a bug in comms phase due to the sign change on gamma 
matrix in hopping term.
Add logging of time spent in CG.
 2015-12-29 23:49:41 +00:00
Azusa Yamaguchi
e6cad3821c Logging improvement 2015-12-29 19:51:18 +00:00
Azusa Yamaguchi
98de1cbb6a Optimised version of rectangle term staples. 
~3.4x faster than the naive.
 2015-12-29 19:22:59 +00:00
Azusa Yamaguchi
f7d61b8b81 Plaq plus rectangle and Iwasaki, Symanzik DBW2. 
http://arxiv.org/pdf/hep-lat/0610075.pdf plaq and rect regress plausibly over 100 trajectories
and under HMC with average plaq and rectangle coming out ok.
 2015-12-28 16:39:26 +00:00
Azusa Yamaguchi
78c4e862ef Plaq, Rectangle, Iwasaki, Symanzik and DBW2 workign and HMC regresses to http://arxiv.org/pdf/hep-lat/0610075.pdf 2015-12-28 16:38:31 +00:00
paboyle
0afcf1cf13 Moved all the HMC tests over to using a single HmcRunner class that manages checkpoint strategies and such like 2015-12-22 11:19:25 +00:00
paboyle
08edbb5cbe HMC bit repro across checkpoints. Fixed parallel RNG issue with threading. 
Conclusion: c++11 distributions not thread safe and must us distinct dist as well as distinct engine
per site. Makes sense when you think of box muller. Also added a reset of dist on fill to ensure
repro across checkpoints.
 2015-12-22 08:54:40 +00:00
paboyle
0abfbcc8eb Naming of files improvement. 2015-12-21 15:37:26 +00:00
paboyle
1b94253ba4 Logging improvement 2015-12-21 15:36:28 +00:00
paboyle
36e6f9ac7b Bug fix. Guess not initialised in refresh step; didn't hit before due to luck in not having a vector 
created with NAN data.
 2015-12-21 15:34:35 +00:00
paboyle
2f41691c11 Bug fix. Guess was not zeroed prior to CG call. Was earlier accidentally benign just due to luck. 2015-12-21 15:33:36 +00:00
paboyle
09bfe52840 Remove extraneous variable 2015-12-21 15:30:28 +00:00
paboyle
8c9010d0f4 Isnan check on guess and convergence assert on result 2015-12-21 15:29:46 +00:00
paboyle
42c583265c Remove timestamp 2015-12-21 15:28:03 +00:00
paboyle
539d698492 Prototypes for CML routines 2015-12-21 15:26:42 +00:00
paboyle
31ca609d12 HMC checkpointing . 
Need a general HMC framework to work in restart.
 2015-12-20 02:29:51 +00:00
paboyle
5710966324 Options to use mersenne twister OR ranlux48 via --enable-rng flag at configure time. 
Can save and restore RNG state via new (serial) I/O routines in a NERSC header style file.
Store a Parallel (one per site) and a single serial RNG file.
 2015-12-19 18:32:25 +00:00
paboyle
e108e708a3 Wilson TM tests and compiles in 2015-12-17 23:06:33 +00:00
paboyle
6f0198d4d9 Merge branch 'master' of https://github.com/paboyle/Grid 2015-12-17 22:34:54 +00:00
paboyle
67ccb043f1 Added TM fermions for DSDR etc.. 2015-12-17 22:34:28 +00:00
Azusa Yamaguchi
24a5a81c53 SSE compile fix 2015-12-16 09:09:37 +00:00
Jung
eb1759d7ea Added Gparity instantiation to no HANDOPT case 
deleted configure (as intended?)
 2015-12-16 00:04:09 -05:00
paboyle
34a0fde2ad Fixes to fermion force terms after sign of gamma_mu (0...3) change. 
Thought I had already committed these.

Believe I have got the Gparity fermion force working.

* tests/Test_gpdwf_force.cc     -- correctly predicts dS for two flavour pseudofermion
                                   based on a small dt update of U field.

* tests/Test_hmc_EODWFRatio_Gparity.cc -- ran 1 trajectory on 8^4 with dH=0.21.

Need to accumulate a full plaquette log to believe fully which will take some hours of run time.
 2015-12-15 23:14:12 +00:00
Jung
bc34b7e808 Merge branch 'master' of https://github.com/paboyle/Grid into scidac1_2 
Conflicts:
	lib/qcd/action/fermion/WilsonKernels.h
	tests/Make.inc
 2015-12-15 11:11:59 -05:00
Jung
284453c5e9 Added gparity mobius defs, added params to ScaledShamir 
checking in before puling master
 2015-12-14 12:15:06 -05:00
paboyle
af855cc129 Updating to fix peek poke to checkerboarded arrays since Chulwoo needs this. 2015-12-12 07:11:46 +00:00
paboyle
a5314eddbb Update todo list 2015-12-10 23:34:03 +00:00
paboyle
78ca15fdd8 Merge branch 'aportelli-master' 2015-12-10 23:15:16 +00:00
paboyle
47fe6b5a7c Merge branch 'master' of https://github.com/aportelli/Grid into aportelli-master 2015-12-10 23:14:52 +00:00
paboyle
b3ef09a54d Merge branch 'master' of https://github.com/paboyle/Grid 2015-12-10 23:05:38 +00:00
paboyle
8ed3940048 New files for Chroma regression 2015-12-10 22:55:59 +00:00
paboyle
3ce10aa975 Fix a regression failure on Mobius; chroma regression added 2015-12-10 22:55:00 +00:00
Azusa Yamaguchi
a32a59fc43 Merge branch 'master' of https://github.com/paboyle/Grid 2015-12-09 12:48:44 +00:00
Antonin Portelli
200de272ed IO: serialisable enums 2015-12-08 13:54:00 +00:00
Antonin Portelli
d68a72e28b IO: code cleaning and string binary IO fix 2015-12-08 13:53:33 +00:00
Antonin Portelli
ab45f029f4 ignore Config.h.in 2015-12-08 13:52:44 +00:00
Jung
77054bd61c Added back Test_gparity 2015-12-08 01:41:32 -05:00
Antonin Portelli
17f9268a55 XmlIO: minor code cleaning 2015-12-07 18:30:00 +00:00