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9 Commits

Author SHA1 Message Date
09146cfc43 Profiling temporary code until optimised 2023-06-15 06:54:10 -04:00
a450e96827 Optional checkpoint smeared configs for FTHMC 2023-06-14 04:54:29 -04:00
0f3678b9be Additional tests 2023-06-13 11:57:11 -04:00
8dd8338e14 Hot start should be properly Hot 2023-06-13 11:56:37 -04:00
11e0dc9851 Ta project 2023-06-13 11:56:11 -04:00
f4ef6dae43 Keep methods virtual 2023-06-13 11:55:05 -04:00
b6e147372b Clean up 2023-06-13 11:54:11 -04:00
3a4a662dc6 Integrator over to smeared force structure 2023-06-13 11:53:38 -04:00
8d06bda6fb Smeared action virtual class 2023-06-13 11:49:09 -04:00
21 changed files with 41 additions and 840 deletions

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@ -419,15 +419,14 @@ until convergence
}
}
if ( Nconv < Nstop ) {
if ( Nconv < Nstop )
std::cout << GridLogIRL << "Nconv ("<<Nconv<<") < Nstop ("<<Nstop<<")"<<std::endl;
std::cout << GridLogIRL << "returning Nstop vectors, the last "<< Nstop-Nconv << "of which might meet convergence criterion only approximately" <<std::endl;
}
eval=eval2;
//Keep only converged
eval.resize(Nstop);// was Nconv
evec.resize(Nstop,grid);// was Nconv
eval.resize(Nconv);// Nstop?
evec.resize(Nconv,grid);// Nstop?
basisSortInPlace(evec,eval,reverse);
}

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@ -604,8 +604,8 @@ void GlobalSharedMemory::SharedMemoryAllocate(uint64_t bytes, int flags)
#ifdef GRID_SYCL_LEVEL_ZERO_IPC
typedef struct { int fd; pid_t pid ; ze_ipc_mem_handle_t ze; } clone_mem_t;
auto zeDevice = cl::sycl::get_native<cl::sycl::backend::ext_oneapi_level_zero>(theGridAccelerator->get_device());
auto zeContext = cl::sycl::get_native<cl::sycl::backend::ext_oneapi_level_zero>(theGridAccelerator->get_context());
auto zeDevice = cl::sycl::get_native<cl::sycl::backend::level_zero>(theGridAccelerator->get_device());
auto zeContext = cl::sycl::get_native<cl::sycl::backend::level_zero>(theGridAccelerator->get_context());
ze_ipc_mem_handle_t ihandle;
clone_mem_t handle;

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@ -423,6 +423,7 @@ void WilsonKernels<Impl>::DhopDirKernel( StencilImpl &st, DoubledGaugeField &U,S
#define KERNEL_CALL(A) KERNEL_CALLNB(A); accelerator_barrier();
#define KERNEL_CALL_EXT(A) \
const uint64_t NN = Nsite*Ls; \
const uint64_t sz = st.surface_list.size(); \
auto ptr = &st.surface_list[0]; \
accelerator_forNB( ss, sz, Simd::Nsimd(), { \

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@ -40,20 +40,18 @@ Lattice<iScalar<iScalar<iScalar<Vec> > > > Determinant(const Lattice<iScalar<iSc
GridBase *grid=Umu.Grid();
auto lvol = grid->lSites();
Lattice<iScalar<iScalar<iScalar<Vec> > > > ret(grid);
typedef typename Vec::scalar_type scalar;
autoView(Umu_v,Umu,CpuRead);
autoView(ret_v,ret,CpuWrite);
thread_for(site,lvol,{
Eigen::MatrixXcd EigenU = Eigen::MatrixXcd::Zero(N,N);
Coordinate lcoor;
grid->LocalIndexToLocalCoor(site, lcoor);
iScalar<iScalar<iMatrix<scalar, N> > > Us;
iScalar<iScalar<iMatrix<ComplexD, N> > > Us;
peekLocalSite(Us, Umu_v, lcoor);
for(int i=0;i<N;i++){
for(int j=0;j<N;j++){
scalar tmp= Us()()(i,j);
ComplexD ztmp(real(tmp),imag(tmp));
EigenU(i,j)=ztmp;
EigenU(i,j) = Us()()(i,j);
}}
ComplexD detD = EigenU.determinant();
typename Vec::scalar_type det(detD.real(),detD.imag());

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@ -705,7 +705,7 @@ public:
}
}
}
std::cout << GridLogDebug << "BuildSurfaceList size is "<<surface_list.size()<<std::endl;
std::cout << "BuildSurfaceList size is "<<surface_list.size()<<std::endl;
}
/// Introduce a block structure and switch off comms on boundaries
void DirichletBlock(const Coordinate &dirichlet_block)

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@ -90,12 +90,10 @@ template<class vtype,int N> accelerator_inline iVector<vtype,N> ProjectOnGroup(c
template<class vtype,int N, typename std::enable_if< GridTypeMapper<vtype>::TensorLevel == 0 >::type * =nullptr>
accelerator_inline iMatrix<vtype,N> ProjectOnGroup(const iMatrix<vtype,N> &arg)
{
typedef typename iMatrix<vtype,N>::scalar_type scalar;
// need a check for the group type?
iMatrix<vtype,N> ret(arg);
vtype nrm;
vtype inner;
scalar one(1.0);
for(int c1=0;c1<N;c1++){
// Normalises row c1
@ -104,7 +102,7 @@ accelerator_inline iMatrix<vtype,N> ProjectOnGroup(const iMatrix<vtype,N> &arg)
inner += innerProduct(ret._internal[c1][c2],ret._internal[c1][c2]);
nrm = sqrt(inner);
nrm = one/nrm;
nrm = 1.0/nrm;
for(int c2=0;c2<N;c2++)
ret._internal[c1][c2]*= nrm;
@ -129,7 +127,7 @@ accelerator_inline iMatrix<vtype,N> ProjectOnGroup(const iMatrix<vtype,N> &arg)
inner += innerProduct(ret._internal[c1][c2],ret._internal[c1][c2]);
nrm = sqrt(inner);
nrm = one/nrm;
nrm = 1.0/nrm;
for(int c2=0;c2<N;c2++)
ret._internal[c1][c2]*= nrm;
}

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@ -55,7 +55,7 @@ template<class vtype, int N> accelerator_inline iVector<vtype, N> Exponentiate(c
// Specialisation: Cayley-Hamilton exponential for SU(3)
#if 0
#ifndef GRID_ACCELERATED
template<class vtype, typename std::enable_if< GridTypeMapper<vtype>::TensorLevel == 0>::type * =nullptr>
accelerator_inline iMatrix<vtype,3> Exponentiate(const iMatrix<vtype,3> &arg, RealD alpha , Integer Nexp = DEFAULT_MAT_EXP )
{

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@ -1,224 +0,0 @@
/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Copyright (C) 2023
Author: Peter Boyle <pabobyle@ph.ed.ac.uk>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution
directory
*************************************************************************************/
/* END LEGAL */
#include <Grid/Grid.h>
#include <Grid/qcd/smearing/GaugeConfigurationMasked.h>
#include <Grid/qcd/smearing/JacobianAction.h>
using namespace Grid;
int main(int argc, char **argv)
{
std::cout << std::setprecision(12);
Grid_init(&argc, &argv);
int threads = GridThread::GetThreads();
// here make a routine to print all the relevant information on the run
std::cout << GridLogMessage << "Grid is setup to use " << threads << " threads" << std::endl;
// Typedefs to simplify notation
typedef WilsonImplR FermionImplPolicy;
typedef MobiusFermionD FermionAction;
typedef typename FermionAction::FermionField FermionField;
typedef Grid::XmlReader Serialiser;
//::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
IntegratorParameters MD;
// typedef GenericHMCRunner<LeapFrog> HMCWrapper;
// MD.name = std::string("Leap Frog");
// typedef GenericHMCRunner<ForceGradient> HMCWrapper;
// MD.name = std::string("Force Gradient");
typedef GenericHMCRunner<MinimumNorm2> HMCWrapper;
MD.name = std::string("MinimumNorm2");
MD.MDsteps = 12;
MD.trajL = 1.0;
HMCparameters HMCparams;
HMCparams.StartTrajectory = 0;
HMCparams.Trajectories = 200;
HMCparams.NoMetropolisUntil= 20;
// "[HotStart, ColdStart, TepidStart, CheckpointStart]\n";
HMCparams.StartingType =std::string("HotStart");
HMCparams.MD = MD;
HMCWrapper TheHMC(HMCparams);
// Grid from the command line arguments --grid and --mpi
TheHMC.Resources.AddFourDimGrid("gauge"); // use default simd lanes decomposition
CheckpointerParameters CPparams;
CPparams.config_prefix = "ckpoint_EODWF_lat";
CPparams.smeared_prefix = "ckpoint_EODWF_lat_smr";
CPparams.rng_prefix = "ckpoint_EODWF_rng";
CPparams.saveInterval = 1;
CPparams.saveSmeared = true;
CPparams.format = "IEEE64BIG";
TheHMC.Resources.LoadNerscCheckpointer(CPparams);
RNGModuleParameters RNGpar;
RNGpar.serial_seeds = "1 2 3 4 5";
RNGpar.parallel_seeds = "6 7 8 9 10";
TheHMC.Resources.SetRNGSeeds(RNGpar);
// Construct observables
// here there is too much indirection
typedef PlaquetteMod<HMCWrapper::ImplPolicy> PlaqObs;
TheHMC.Resources.AddObservable<PlaqObs>();
//////////////////////////////////////////////
const int Ls = 16;
Real beta = 2.13;
Real light_mass = 0.01;
Real strange_mass = 0.04;
Real pv_mass = 1.0;
RealD M5 = 1.8;
RealD b = 1.0; // Scale factor two
RealD c = 0.0;
OneFlavourRationalParams OFRp;
OFRp.lo = 1.0e-2;
OFRp.hi = 64;
OFRp.MaxIter = 10000;
OFRp.tolerance= 1.0e-10;
OFRp.degree = 14;
OFRp.precision= 40;
std::vector<Real> hasenbusch({ 0.1 });
auto GridPtr = TheHMC.Resources.GetCartesian();
auto GridRBPtr = TheHMC.Resources.GetRBCartesian();
auto FGrid = SpaceTimeGrid::makeFiveDimGrid(Ls,GridPtr);
auto FrbGrid = SpaceTimeGrid::makeFiveDimRedBlackGrid(Ls,GridPtr);
IwasakiGaugeActionR GaugeAction(beta);
// temporarily need a gauge field
LatticeGaugeField U(GridPtr);
LatticeGaugeField Uhot(GridPtr);
// These lines are unecessary if BC are all periodic
std::vector<Complex> boundary = {1,1,1,-1};
FermionAction::ImplParams Params(boundary);
double StoppingCondition = 1e-10;
double MaxCGIterations = 30000;
ConjugateGradient<FermionField> CG(StoppingCondition,MaxCGIterations);
bool ApplySmearing = true;
////////////////////////////////////
// Collect actions
////////////////////////////////////
ActionLevel<HMCWrapper::Field> Level1(1);
ActionLevel<HMCWrapper::Field> Level2(2);
ActionLevel<HMCWrapper::Field> Level3(4);
////////////////////////////////////
// Strange action
////////////////////////////////////
MobiusEOFAFermionD Strange_Op_L (U , *FGrid , *FrbGrid , *GridPtr , *GridRBPtr , strange_mass, strange_mass, pv_mass, 0.0, -1, M5, b, c);
MobiusEOFAFermionD Strange_Op_R (U , *FGrid , *FrbGrid , *GridPtr , *GridRBPtr , pv_mass, strange_mass, pv_mass, -1.0, 1, M5, b, c);
ExactOneFlavourRatioPseudoFermionAction<FermionImplPolicy>
EOFA(Strange_Op_L, Strange_Op_R,
CG,
CG, CG,
CG, CG,
OFRp, false);
EOFA.is_smeared = ApplySmearing;
Level1.push_back(&EOFA);
////////////////////////////////////
// up down action
////////////////////////////////////
std::vector<Real> light_den;
std::vector<Real> light_num;
int n_hasenbusch = hasenbusch.size();
light_den.push_back(light_mass);
for(int h=0;h<n_hasenbusch;h++){
light_den.push_back(hasenbusch[h]);
light_num.push_back(hasenbusch[h]);
}
light_num.push_back(pv_mass);
std::vector<FermionAction *> Numerators;
std::vector<FermionAction *> Denominators;
std::vector<TwoFlavourEvenOddRatioPseudoFermionAction<FermionImplPolicy> *> Quotients;
for(int h=0;h<n_hasenbusch+1;h++){
std::cout << GridLogMessage << " 2f quotient Action "<< light_num[h] << " / " << light_den[h]<< std::endl;
Numerators.push_back (new FermionAction(U,*FGrid,*FrbGrid,*GridPtr,*GridRBPtr,light_num[h],M5,b,c, Params));
Denominators.push_back(new FermionAction(U,*FGrid,*FrbGrid,*GridPtr,*GridRBPtr,light_den[h],M5,b,c, Params));
Quotients.push_back (new TwoFlavourEvenOddRatioPseudoFermionAction<FermionImplPolicy>(*Numerators[h],*Denominators[h],CG,CG));
}
for(int h=0;h<n_hasenbusch+1;h++){
Quotients[h]->is_smeared = ApplySmearing;
Level1.push_back(Quotients[h]);
}
/////////////////////////////////////////////////////////////
// lnDetJacobianAction
/////////////////////////////////////////////////////////////
double rho = 0.1; // smearing parameter
int Nsmear = 1; // number of smearing levels - must be multiple of 2Nd
int Nstep = 8*Nsmear; // number of smearing levels - must be multiple of 2Nd
Smear_Stout<HMCWrapper::ImplPolicy> Stout(rho);
SmearedConfigurationMasked<HMCWrapper::ImplPolicy> SmearingPolicy(GridPtr, Nstep, Stout);
JacobianAction<HMCWrapper::ImplPolicy> Jacobian(&SmearingPolicy);
if( ApplySmearing ) Level2.push_back(&Jacobian);
std::cout << GridLogMessage << " Built the Jacobian "<< std::endl;
/////////////////////////////////////////////////////////////
// Gauge action
/////////////////////////////////////////////////////////////
// GaugeAction.is_smeared = ApplySmearing;
GaugeAction.is_smeared = true;
Level3.push_back(&GaugeAction);
std::cout << GridLogMessage << " ************************************************"<< std::endl;
std::cout << GridLogMessage << " Action complete -- NO FERMIONS FOR NOW -- FIXME"<< std::endl;
std::cout << GridLogMessage << " ************************************************"<< std::endl;
std::cout << GridLogMessage << std::endl;
std::cout << GridLogMessage << std::endl;
std::cout << GridLogMessage << " Running the FT HMC "<< std::endl;
TheHMC.TheAction.push_back(Level1);
TheHMC.TheAction.push_back(Level2);
TheHMC.TheAction.push_back(Level3);
TheHMC.Run(SmearingPolicy); // for smearing
Grid_finalize();
} // main

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@ -146,8 +146,6 @@ NAMESPACE_END(Grid);
int main(int argc, char **argv) {
using namespace Grid;
std::cout << " Grid Initialise "<<std::endl;
Grid_init(&argc, &argv);
CartesianCommunicator::BarrierWorld();
@ -172,24 +170,24 @@ int main(int argc, char **argv) {
IntegratorParameters MD;
// typedef GenericHMCRunner<LeapFrog> HMCWrapper;
// MD.name = std::string("Leap Frog");
// typedef GenericHMCRunner<ForceGradient> HMCWrapper;
// MD.name = std::string("Force Gradient");
typedef GenericHMCRunner<MinimumNorm2> HMCWrapper;
MD.name = std::string("MinimumNorm2");
typedef GenericHMCRunner<ForceGradient> HMCWrapper;
MD.name = std::string("Force Gradient");
//typedef GenericHMCRunner<MinimumNorm2> HMCWrapper;
// MD.name = std::string("MinimumNorm2");
// TrajL = 2
// 4/2 => 0.6 dH
// 3/3 => 0.8 dH .. depth 3, slower
//MD.MDsteps = 4;
MD.MDsteps = 14;
MD.MDsteps = 12;
MD.trajL = 0.5;
HMCparameters HMCparams;
HMCparams.StartTrajectory = 1077;
HMCparams.Trajectories = 20;
HMCparams.Trajectories = 1;
HMCparams.NoMetropolisUntil= 0;
// "[HotStart, ColdStart, TepidStart, CheckpointStart]\n";
HMCparams.StartingType =std::string("ColdStart");
// HMCparams.StartingType =std::string("CheckpointStart");
// HMCparams.StartingType =std::string("ColdStart");
HMCparams.StartingType =std::string("CheckpointStart");
HMCparams.MD = MD;
HMCWrapper TheHMC(HMCparams);
@ -225,7 +223,7 @@ int main(int argc, char **argv) {
Real pv_mass = 1.0;
// std::vector<Real> hasenbusch({ 0.01, 0.045, 0.108, 0.25, 0.51 , pv_mass });
// std::vector<Real> hasenbusch({ light_mass, 0.01, 0.045, 0.108, 0.25, 0.51 , pv_mass });
std::vector<Real> hasenbusch({ 0.005, 0.0145, 0.045, 0.108, 0.25, 0.51 }); // Updated
std::vector<Real> hasenbusch({ 0.005, 0.0145, 0.045, 0.108, 0.25, 0.51 , pv_mass }); // Updated
// std::vector<Real> hasenbusch({ light_mass, 0.0145, 0.045, 0.108, 0.25, 0.51 , 0.75 , pv_mass });
auto GridPtr = TheHMC.Resources.GetCartesian();
@ -277,10 +275,10 @@ int main(int argc, char **argv) {
// double StoppingCondition = 1e-14;
// double MDStoppingCondition = 1e-9;
double StoppingCondition = 1e-9;
double MDStoppingCondition = 1e-8;
double MDStoppingConditionLoose = 1e-8;
double MDStoppingConditionStrange = 1e-8;
double StoppingCondition = 1e-8;
double MDStoppingCondition = 1e-7;
double MDStoppingConditionLoose = 1e-7;
double MDStoppingConditionStrange = 1e-7;
double MaxCGIterations = 300000;
ConjugateGradient<FermionField> CG(StoppingCondition,MaxCGIterations);
ConjugateGradient<FermionField> MDCG(MDStoppingCondition,MaxCGIterations);

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@ -1,44 +0,0 @@
#!/bin/bash -l
#SBATCH --job-name=bench_lehner
#SBATCH --partition=small-g
#SBATCH --nodes=2
#SBATCH --ntasks-per-node=8
#SBATCH --cpus-per-task=7
#SBATCH --gpus-per-node=8
#SBATCH --time=00:10:00
#SBATCH --account=project_465000546
#SBATCH --gpu-bind=none
#SBATCH --exclusive
#SBATCH --mem=0
CPU_BIND="map_cpu:48,56,32,40,16,24,1,8"
echo $CPU_BIND
cat << EOF > select_gpu
#!/bin/bash
export GPU_MAP=(0 1 2 3 4 5 6 7)
export GPU=\${GPU_MAP[\$SLURM_LOCALID]}
export HIP_VISIBLE_DEVICES=\$GPU
unset ROCR_VISIBLE_DEVICES
echo RANK \$SLURM_LOCALID using GPU \$GPU
exec \$*
EOF
chmod +x ./select_gpu
root=/scratch/project_465000546/boylepet/Grid/systems/Lumi
source ${root}/sourceme.sh
export OMP_NUM_THREADS=7
export MPICH_GPU_SUPPORT_ENABLED=1
export MPICH_SMP_SINGLE_COPY_MODE=XPMEM
for vol in 16.16.16.64 32.32.32.64 32.32.32.128
do
srun --cpu-bind=${CPU_BIND} ./select_gpu ./Benchmark_dwf_fp32 --mpi 2.2.2.2 --accelerator-threads 8 --comms-overlap --shm 2048 --shm-mpi 0 --grid $vol > log.shm0.ov.$vol
#srun --cpu-bind=${CPU_BIND} ./select_gpu ./Benchmark_dwf_fp32 --mpi 2.2.2.2 --accelerator-threads 8 --comms-overlap --shm 2048 --shm-mpi 1 --grid $vol > log.shm1.ov.$vol
srun --cpu-bind=${CPU_BIND} ./select_gpu ./Benchmark_dwf_fp32 --mpi 2.2.2.2 --accelerator-threads 8 --comms-sequential --shm 2048 --shm-mpi 0 --grid $vol > log.shm0.seq.$vol
#srun --cpu-bind=${CPU_BIND} ./select_gpu ./Benchmark_dwf_fp32 --mpi 2.2.2.2 --accelerator-threads 8 --comms-sequential --shm 2048 --shm-mpi 1 --grid $vol > log.shm1.seq.$vol
done

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@ -3,28 +3,30 @@ spack load gmp
spack load mpfr
CLIME=`spack find --paths c-lime | grep c-lime| cut -c 15-`
GMP=`spack find --paths gmp | grep gmp | cut -c 12-`
MPFR=`spack find --paths mpfr | grep mpfr | cut -c 13-`
echo clime X$CLIME
echo gmp X$GMP
echo mpfr X$MPFR
MPFR=`spack find --paths mpfr | grep mpfr | cut -c 12-`
echo clime $CLIME
echo gmp $GMP
echo mpfr $MPFR
../../configure \
--enable-comms=mpi-auto \
../../configure --enable-comms=mpi-auto \
--with-lime=$CLIME \
--enable-unified=no \
--enable-shm=nvlink \
--enable-tracing=timer \
--enable-accelerator=hip \
--enable-gen-simd-width=64 \
--enable-simd=GPU \
--enable-accelerator-cshift \
--with-gmp=$GMP \
--with-mpfr=$MPFR \
--disable-accelerator-cshift \
--with-gmp=$OLCF_GMP_ROOT \
--with-fftw=$FFTW_DIR/.. \
--with-mpfr=/opt/cray/pe/gcc/mpfr/3.1.4/ \
--disable-fermion-reps \
--disable-gparity \
CXX=hipcc MPICXX=mpicxx \
CXXFLAGS="-fPIC --offload-arch=gfx90a -I/opt/rocm/include/ -std=c++14 -I/opt/cray/pe/mpich/8.1.23/ofi/gnu/9.1/include" \
LDFLAGS="-L/opt/cray/pe/mpich/8.1.23/ofi/gnu/9.1/lib -lmpi -L/opt/cray/pe/mpich/8.1.23/gtl/lib -lmpi_gtl_hsa -lamdhip64 -fopenmp"
CXXFLAGS="-fPIC -I{$ROCM_PATH}/include/ -std=c++14 -I${MPICH_DIR}/include -L/lib64 --amdgpu-target=gfx90a" \
LDFLAGS="-L/lib64 -L/opt/rocm-5.2.0/lib/ -L${MPICH_DIR}/lib -lmpi -L${CRAY_MPICH_ROOTDIR}/gtl/lib -lmpi_gtl_hsa -lamdhip64 --amdgpu-target=gfx90a "
#--enable-simd=GPU-RRII \

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@ -1,5 +1 @@
source ~/spack/share/spack/setup-env.sh
module load CrayEnv LUMI/22.12 partition/G cray-fftw/3.3.10.1 rocm
spack load c-lime
spack load gmp
spack load mpfr
module load CrayEnv LUMI/22.12 partition/G cray-fftw/3.3.10.1

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@ -1,53 +0,0 @@
1. Prerequisites:
===================
Make sure you have the latest Intel ipcx release loaded (via modules or similar)
Make sure you have SYCL aware MPICH or Intel MPI loaded (assumed as mpicxx)
2. Obtain Grid:
===================
bash$
git clone https://github.com/paboyle/Grid
cd Grid
./bootstrap.sh
cd systems/PVC
3. Build Grid:
===================
Here, configure command is stored in file config-command:
bash$
../../configure \
--enable-simd=GPU \
--enable-gen-simd-width=64 \
--enable-comms=mpi-auto \
--enable-accelerator-cshift \
--disable-gparity \
--disable-fermion-reps \
--enable-shm=nvlink \
--enable-accelerator=sycl \
--enable-unified=no \
MPICXX=mpicxx \
CXX=icpx \
LDFLAGS="-fiopenmp -fsycl -fsycl-device-code-split=per_kernel -fsycl-device-lib=all -lze_loader " \
CXXFLAGS="-fiopenmp -fsycl-unnamed-lambda -fsycl -Wno-tautological-compare "
make all
4. Run a benchmark:
===================
*** Assumes interactive access to node. ***
run Benchmark_dwf_fp32 using benchmarks/bench.sh
bash$
cd benchmarks
./bench.sh

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@ -1,18 +0,0 @@
#!/bin/bash
export EnableImplicitScaling=0
export ZE_ENABLE_PCI_ID_DEVICE_ORDER=1
export ZE_AFFINITY_MASK=$gpu_id.$tile_id
export ONEAPI_DEVICE_FILTER=gpu,level_zero
export SYCL_PI_LEVEL_ZERO_DEVICE_SCOPE_EVENTS=0
export SYCL_PI_LEVEL_ZERO_USE_IMMEDIATE_COMMANDLISTS=1
export SYCL_PI_LEVEL_ZERO_USE_COPY_ENGINE=0:2
export SYCL_PI_LEVEL_ZERO_USE_COPY_ENGINE_FOR_D2D_COPY=1
mpiexec -launcher ssh -n 1 -host localhost ./select_gpu.sh ./Benchmark_dwf_fp32 --mpi 1.1.1.1 --grid 32.32.32.32 --accelerator-threads 16 --shm-mpi 1 --shm 2048 --device-mem 32768 | tee 1tile.log
mpiexec -launcher ssh -n 2 -host localhost ./select_gpu.sh ./Benchmark_dwf_fp32 --mpi 1.1.1.2 --grid 32.32.32.64 --accelerator-threads 16 --shm-mpi 1 --shm 2048 --device-mem 32768 | tee 2tile.log
#mpiexec -launcher ssh -n 4 -host localhost ./select_gpu.sh ./Benchmark_dwf_fp32 --mpi 1.1.2.2 --grid 16.16.64.64 --accelerator-threads 16 --shm-mpi 0 --shm 2048 --device-mem 32768 | tee 4tile.log
#mpiexec -launcher ssh -n 8 -host localhost ./select_gpu.sh ./Benchmark_dwf_fp32 --mpi 1.1.2.4 --grid 16.16.64.128 --accelerator-threads 16 --shm-mpi 0 --shm 2048 --device-mem 32768 | tee 8tile.log

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#!/bin/bash
num_tile=2
gpu_id=$(( (MPI_LOCAL_RANKID % num_tile ) ))
tile_id=$((MPI_LOCAL_RANKID / num_tile))
export ZE_AFFINITY_MASK=$gpu_id.$tile_id
echo "local rank $MPI_LOCALRANKID ; ZE_AFFINITY_MASK=$ZE_AFFINITY_MASK"
"$@"

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../../configure \
--enable-simd=GPU \
--enable-gen-simd-width=64 \
--enable-comms=mpi-auto \
--enable-accelerator-cshift \
--disable-gparity \
--disable-fermion-reps \
--enable-shm=nvlink \
--enable-accelerator=sycl \
--enable-unified=no \
MPICXX=mpicxx \
CXX=icpx \
LDFLAGS="-fiopenmp -fsycl -fsycl-device-code-split=per_kernel -fsycl-device-lib=all -lze_loader " \
CXXFLAGS="-fiopenmp -fsycl-unnamed-lambda -fsycl -Wno-tautological-compare "

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export https_proxy=http://proxy-chain.intel.com:911
module load intel-release
module load intel/mpich

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#!/bin/bash
#PBS -l select=1:system=sunspot,place=scatter
#PBS -A LatticeQCD_aesp_CNDA
#PBS -l walltime=01:00:00
#PBS -N dwf
#PBS -k doe
HDIR=/home/paboyle/
module use /soft/testing/modulefiles/
module load intel-UMD23.05.25593.11/23.05.25593.11
module load tools/pti-gpu
export LD_LIBRARY_PATH=$HDIR/tools/lib64:$LD_LIBRARY_PATH
export PATH=$HDIR/tools/bin:$PATH
export TZ='/usr/share/zoneinfo/US/Central'
export OMP_PROC_BIND=spread
export OMP_NUM_THREADS=3
unset OMP_PLACES
cd $PBS_O_WORKDIR
qsub jobscript.pbs
echo Jobid: $PBS_JOBID
echo Running on host `hostname`
echo Running on nodes `cat $PBS_NODEFILE`
echo NODES
cat $PBS_NODEFILE
NNODES=`wc -l < $PBS_NODEFILE`
NRANKS=12 # Number of MPI ranks per node
NDEPTH=4 # Number of hardware threads per rank, spacing between MPI ranks on a node
NTHREADS=$OMP_NUM_THREADS # Number of OMP threads per rank, given to OMP_NUM_THREADS
NTOTRANKS=$(( NNODES * NRANKS ))
echo "NUM_NODES=${NNODES} TOTAL_RANKS=${NTOTRANKS} RANKS_PER_NODE=${NRANKS} THREADS_PER_RANK=${OMP_NUM_THREADS}"
echo "OMP_PROC_BIND=$OMP_PROC_BIND OMP_PLACES=$OMP_PLACES"
CMD="mpiexec -np ${NTOTRANKS} -ppn ${NRANKS} -d ${NDEPTH} --cpu-bind=depth -envall \
./gpu_tile_compact.sh \
./Benchmark_dwf_fp32 --mpi 1.1.2.6 --grid 16.32.64.192 --comms-overlap \
--shm-mpi 0 --shm 2048 --device-mem 32000 --accelerator-threads 32"

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#!/bin/bash
display_help() {
echo " Will map gpu tile to rank in compact and then round-robin fashion"
echo " Usage (only work for one node of ATS/PVC):"
echo " mpiexec --np N gpu_tile_compact.sh ./a.out"
echo
echo " Example 3 GPU of 2 Tiles with 7 Ranks:"
echo " 0 Rank 0.0"
echo " 1 Rank 0.1"
echo " 2 Rank 1.0"
echo " 3 Rank 1.1"
echo " 4 Rank 2.0"
echo " 5 Rank 2.1"
echo " 6 Rank 0.0"
echo
echo " Hacked together by apl@anl.gov, please contact if bug found"
exit 1
}
#This give the exact GPU count i915 knows about and I use udev to only enumerate the devices with physical presence.
#works? num_gpu=$(/usr/bin/udevadm info /sys/module/i915/drivers/pci\:i915/* |& grep -v Unknown | grep -c "P: /devices")
num_gpu=6
num_tile=2
if [ "$#" -eq 0 ] || [ "$1" == "--help" ] || [ "$1" == "-h" ] || [ "$num_gpu" = 0 ]; then
display_help
fi
gpu_id=$(( (PALS_LOCAL_RANKID / num_tile ) % num_gpu ))
tile_id=$((PALS_LOCAL_RANKID % num_tile))
unset EnableWalkerPartition
export EnableImplicitScaling=0
export ZE_ENABLE_PCI_ID_DEVICE_ORDER=1
export ZE_AFFINITY_MASK=$gpu_id.$tile_id
export ONEAPI_DEVICE_FILTER=gpu,level_zero
export SYCL_PI_LEVEL_ZERO_DEVICE_SCOPE_EVENTS=0
export SYCL_PI_LEVEL_ZERO_USE_IMMEDIATE_COMMANDLISTS=1
export SYCL_PI_LEVEL_ZERO_USE_COPY_ENGINE=0:2
export SYCL_PI_LEVEL_ZERO_USE_COPY_ENGINE_FOR_D2D_COPY=1
#export SYCL_PI_LEVEL_ZERO_USM_RESIDENT=1
echo "rank $PALS_RANKID ; local rank $PALS_LOCAL_RANKID ; ZE_AFFINITY_MASK=$ZE_AFFINITY_MASK"
if [ $PALS_LOCAL_RANKID = 0 ]
then
onetrace --chrome-device-timeline "$@"
# "$@"
else
"$@"
fi

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TOOLS=$HOME/tools
../../configure \
--enable-simd=GPU \
--enable-gen-simd-width=64 \
--enable-comms=mpi-auto \
--enable-accelerator-cshift \
--disable-gparity \
--disable-fermion-reps \
--enable-shm=nvlink \
--enable-accelerator=sycl \
--enable-unified=no \
MPICXX=mpicxx \
CXX=icpx \
LDFLAGS="-fiopenmp -fsycl -fsycl-device-code-split=per_kernel -fsycl-device-lib=all -lze_loader -lapmidg -L$TOOLS/lib64/" \
CXXFLAGS="-fiopenmp -fsycl-unnamed-lambda -fsycl -I$INSTALL/include -Wno-tautological-compare -I$HOME/ -I$TOOLS/include"

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/*************************************************************************************
grid` physics library, www.github.com/paboyle/Grid
Source file: ./tests/Test_cshift.cc
Copyright (C) 2015
Author: Azusa Yamaguchi <ayamaguc@staffmail.ed.ac.uk>
Author: Peter Boyle <paboyle@ph.ed.ac.uk>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#include <Grid/Grid.h>
using namespace Grid;
int main (int argc, char ** argv)
{
Grid_init(&argc,&argv);
int threads = GridThread::GetThreads();
std::cout<<GridLogMessage << "Grid is setup to use "<<threads<<" threads"<<std::endl;
Coordinate latt_size = GridDefaultLatt();
Coordinate simd_layout( { vComplexD::Nsimd(),1,1,1});
Coordinate mpi_layout = GridDefaultMpi();
int vol = 1;
for(int d=0;d<latt_size.size();d++){
vol = vol * latt_size[d];
}
GridCartesian GRID(latt_size,simd_layout,mpi_layout);
GridRedBlackCartesian RBGRID(&GRID);
ComplexD ci(0.0,1.0);
std::vector<int> seeds({1,2,3,4});
GridSerialRNG sRNG; sRNG.SeedFixedIntegers(seeds); // naughty seeding
GridParallelRNG pRNG(&GRID);
pRNG.SeedFixedIntegers(seeds);
LatticeGaugeFieldD Umu(&GRID);
SU<Nc>::ColdConfiguration(pRNG,Umu); // Unit gauge
////////////////////////////////////////////////////
// PF prop
////////////////////////////////////////////////////
LatticeFermionD src(&GRID);
gaussian(pRNG,src);
#if 1
Coordinate point(4,0);
src=Zero();
SpinColourVectorD ferm; gaussian(sRNG,ferm);
pokeSite(ferm,src,point);
#endif
{
std::cout<<"****************************************"<<std::endl;
std::cout << "Testing PartialFraction Hw kernel Mom space 4d propagator \n";
std::cout<<"****************************************"<<std::endl;
// LatticeFermionD src(&GRID); gaussian(pRNG,src);
LatticeFermionD tmp(&GRID);
LatticeFermionD ref(&GRID);
LatticeFermionD diff(&GRID);
const int Ls=48+1;
GridCartesian * FGrid = SpaceTimeGrid::makeFiveDimGrid(Ls,&GRID);
GridRedBlackCartesian * FrbGrid = SpaceTimeGrid::makeFiveDimRedBlackGrid(Ls,&GRID);
RealD mass=0.1;
RealD M5 =0.8;
OverlapWilsonPartialFractionZolotarevFermionD Dov(Umu,*FGrid,*FrbGrid,GRID,RBGRID,mass,M5,0.001,8.0);
// Momentum space prop
std::cout << " Solving by FFT and Feynman rules" <<std::endl;
bool fiveD = false; //calculate 4d free propagator
std::cout << " Free propagator " <<std::endl;
Dov.FreePropagator(src,ref,mass) ;
std::cout << " Free propagator norm "<< norm2(ref) <<std::endl;
Gamma G5(Gamma::Algebra::Gamma5);
LatticeFermionD src5(FGrid); src5=Zero();
LatticeFermionD tmp5(FGrid);
LatticeFermionD result5(FGrid); result5=Zero();
LatticeFermionD result4(&GRID);
const int sdir=0;
////////////////////////////////////////////////////////////////////////
// Import
////////////////////////////////////////////////////////////////////////
std::cout << " Free propagator Import "<< norm2(src) <<std::endl;
Dov.ImportPhysicalFermionSource (src,src5);
std::cout << " Free propagator Imported "<< norm2(src5) <<std::endl;
////////////////////////////////////////////////////////////////////////
// Conjugate gradient on normal equations system
////////////////////////////////////////////////////////////////////////
std::cout << " Solving by Conjugate Gradient (CGNE)" <<std::endl;
Dov.Mdag(src5,tmp5);
src5=tmp5;
MdagMLinearOperator<OverlapWilsonPartialFractionZolotarevFermionD,LatticeFermionD> HermOp(Dov);
ConjugateGradient<LatticeFermionD> CG(1.0e-8,10000);
CG(HermOp,src5,result5);
////////////////////////////////////////////////////////////////////////
// Domain wall physical field propagator
////////////////////////////////////////////////////////////////////////
Dov.ExportPhysicalFermionSolution(result5,result4);
// From DWF4d.pdf :
//
// Dov_pf = 2/(1-m) D_cayley_ovlap [ Page 43 ]
// Dinv_cayley_ovlap = 2/(1-m) Dinv_pf
// Dinv_cayley_surface =1/(1-m) ( Dinv_cayley_ovlap - 1 ) => 2/(1-m)^2 Dinv_pf - 1/(1-m) * src [ Eq.2.67 ]
RealD scale = 2.0/(1.0-mass)/(1.0-mass);
result4 = result4 * scale;
result4 = result4 - src*(1.0/(1.0-mass)); // Subtract contact term
DumpSliceNorm("Src",src);
DumpSliceNorm("Grid",result4);
DumpSliceNorm("Fourier",ref);
std::cout << "Dov result4 "<<norm2(result4)<<std::endl;
std::cout << "Dov ref "<<norm2(ref)<<std::endl;
diff = result4- ref;
DumpSliceNorm("diff ",diff);
}
////////////////////////////////////////////////////
// Dwf prop
////////////////////////////////////////////////////
{
std::cout<<"****************************************"<<std::endl;
std::cout << "Testing Dov(Hw) Mom space 4d propagator \n";
std::cout<<"****************************************"<<std::endl;
LatticeFermionD tmp(&GRID);
LatticeFermionD ref(&GRID);
LatticeFermionD diff(&GRID);
const int Ls=48;
GridCartesian * FGrid = SpaceTimeGrid::makeFiveDimGrid(Ls,&GRID);
GridRedBlackCartesian * FrbGrid = SpaceTimeGrid::makeFiveDimRedBlackGrid(Ls,&GRID);
RealD mass=0.1;
RealD M5 =0.8;
OverlapWilsonCayleyTanhFermionD Dov(Umu,*FGrid,*FrbGrid,GRID,RBGRID,mass,M5,1.0);
// Momentum space prop
std::cout << " Solving by FFT and Feynman rules" <<std::endl;
Dov.FreePropagator(src,ref,mass) ;
Gamma G5(Gamma::Algebra::Gamma5);
LatticeFermionD src5(FGrid); src5=Zero();
LatticeFermionD tmp5(FGrid);
LatticeFermionD result5(FGrid); result5=Zero();
LatticeFermionD result4(&GRID);
const int sdir=0;
////////////////////////////////////////////////////////////////////////
// Domain wall physical field source; need D_minus
////////////////////////////////////////////////////////////////////////
/*
chi_5[0] = chiralProjectPlus(chi);
chi_5[Ls-1]= chiralProjectMinus(chi);
*/
tmp = (src + G5*src)*0.5; InsertSlice(tmp,src5, 0,sdir);
tmp = (src - G5*src)*0.5; InsertSlice(tmp,src5,Ls-1,sdir);
////////////////////////////////////////////////////////////////////////
// Conjugate gradient on normal equations system
////////////////////////////////////////////////////////////////////////
std::cout << " Solving by Conjugate Gradient (CGNE)" <<std::endl;
Dov.Dminus(src5,tmp5);
src5=tmp5;
Dov.Mdag(src5,tmp5);
src5=tmp5;
MdagMLinearOperator<OverlapWilsonCayleyTanhFermionD,LatticeFermionD> HermOp(Dov);
ConjugateGradient<LatticeFermionD> CG(1.0e-16,10000);
CG(HermOp,src5,result5);
////////////////////////////////////////////////////////////////////////
// Domain wall physical field propagator
////////////////////////////////////////////////////////////////////////
/*
psi = chiralProjectMinus(psi_5[0]);
psi += chiralProjectPlus(psi_5[Ls-1]);
*/
ExtractSlice(tmp,result5,0 ,sdir); result4 = (tmp-G5*tmp)*0.5;
ExtractSlice(tmp,result5,Ls-1,sdir); result4 = result4+(tmp+G5*tmp)*0.5;
std::cout << " Taking difference" <<std::endl;
std::cout << "Dov result4 "<<norm2(result4)<<std::endl;
std::cout << "Dov ref "<<norm2(ref)<<std::endl;
DumpSliceNorm("Grid",result4);
DumpSliceNorm("Fourier",ref);
diff = ref - result4;
std::cout << "result - ref "<<norm2(diff)<<std::endl;
DumpSliceNorm("diff",diff);
}
{
std::cout<<"****************************************"<<std::endl;
std::cout << "Testing PartialFraction Hw kernel Mom space 4d propagator with q\n";
std::cout<<"****************************************"<<std::endl;
// LatticeFermionD src(&GRID); gaussian(pRNG,src);
LatticeFermionD tmp(&GRID);
LatticeFermionD ref(&GRID);
LatticeFermionD diff(&GRID);
const int Ls=48+1;
GridCartesian * FGrid = SpaceTimeGrid::makeFiveDimGrid(Ls,&GRID);
GridRedBlackCartesian * FrbGrid = SpaceTimeGrid::makeFiveDimRedBlackGrid(Ls,&GRID);
RealD mass=0.1;
RealD M5 =0.8;
OverlapWilsonPartialFractionZolotarevFermionD Dov(Umu,*FGrid,*FrbGrid,GRID,RBGRID,mass,M5,0.001,8.0);
// Momentum space prop
std::cout << " Solving by FFT and Feynman rules" <<std::endl;
bool fiveD = false; //calculate 4d free propagator
std::cout << " Free propagator " <<std::endl;
Dov.FreePropagator(src,ref,mass) ;
std::cout << " Free propagator norm "<< norm2(ref) <<std::endl;
Gamma G5(Gamma::Algebra::Gamma5);
LatticeFermionD src5(FGrid); src5=Zero();
LatticeFermionD tmp5(FGrid);
LatticeFermionD result5(FGrid); result5=Zero();
LatticeFermionD result4(&GRID);
const int sdir=0;
////////////////////////////////////////////////////////////////////////
// Import
////////////////////////////////////////////////////////////////////////
std::cout << " Free propagator Import "<< norm2(src) <<std::endl;
Dov.ImportPhysicalFermionSource (src,src5);
std::cout << " Free propagator Imported "<< norm2(src5) <<std::endl;
////////////////////////////////////////////////////////////////////////
// Conjugate gradient on normal equations system
////////////////////////////////////////////////////////////////////////
std::cout << " Solving by Conjugate Gradient (CGNE)" <<std::endl;
Dov.Mdag(src5,tmp5);
src5=tmp5;
MdagMLinearOperator<OverlapWilsonPartialFractionZolotarevFermionD,LatticeFermionD> HermOp(Dov);
ConjugateGradient<LatticeFermionD> CG(1.0e-8,10000);
CG(HermOp,src5,result5);
////////////////////////////////////////////////////////////////////////
// Domain wall physical field propagator
////////////////////////////////////////////////////////////////////////
Dov.ExportPhysicalFermionSolution(result5,result4);
// From DWF4d.pdf :
//
// Dov_pf = 2/(1-m) D_cayley_ovlap [ Page 43 ]
// Dinv_cayley_ovlap = 2/(1-m) Dinv_pf
// Dinv_cayley_surface =1/(1-m) ( Dinv_cayley_ovlap - 1 ) => 2/(1-m)^2 Dinv_pf - 1/(1-m) * src [ Eq.2.67 ]
RealD scale = 2.0/(1.0-mass)/(1.0-mass);
result4 = result4 * scale;
result4 = result4 - src*(1.0/(1.0-mass)); // Subtract contact term
DumpSliceNorm("Src",src);
DumpSliceNorm("Grid",result4);
DumpSliceNorm("Fourier",ref);
std::cout << "Dov result4 "<<norm2(result4)<<std::endl;
std::cout << "Dov ref "<<norm2(ref)<<std::endl;
diff = result4- ref;
DumpSliceNorm("diff ",diff);
}
Grid_finalize();
}