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@@ -56,6 +56,7 @@ Author: paboyle <paboyle@ph.ed.ac.uk>
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#include <Grid/communicator/Communicator.h>
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#include <Grid/communicator/RingAllReduce.h>
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#include <Grid/cartesian/Cartesian.h>
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#include <Grid/perfmon/HostMemory.h>
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#include <Grid/tensors/Tensors.h>
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#include <Grid/lattice/Lattice.h>
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#include <Grid/cshift/Cshift.h>
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@@ -104,13 +104,11 @@ inline int GridSplitVectorIndex(GridBase *full,GridBase *split)
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// line (--batched-solver-split). Uses the trailing dimensions of grid's processor and shm
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// layouts, so it works for 4d and 5d grids. Returns grid's own processor layout (one
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// partition) when no split is requested. Asserts divisibility; warns when partitions
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// straddle nodes, when node boundaries are not visible, or when there are more partitions
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// than right-hand sides.
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// straddle nodes or when node boundaries are not visible.
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/////////////////////////////////////////////////////////////////////////////////////////////
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inline Coordinate BatchedSolverSplitLayout(GridBase *grid,
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const Coordinate &request,
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bool node,
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int nbatch,
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int &partitions)
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{
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int nd = GridDefaultMpi().size();
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@@ -168,10 +166,6 @@ inline Coordinate BatchedSolverSplitLayout(GridBase *grid,
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std::cout << GridLogWarning << "BatchedSolverSplit: partitions " << split
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<< " straddle node boundaries (node layout " << shm << "); inner solves will communicate off node" << std::endl;
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}
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if ( partitions > nbatch ) {
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std::cout << GridLogWarning << "BatchedSolverSplit: " << partitions << " partitions for "
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<< nbatch << " right-hand sides; the extra partitions only solve zero padding" << std::endl;
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}
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return split;
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}
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@@ -53,9 +53,17 @@ public:
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// Inner solves on independent partitions of the communicator (--batched-solver-split).
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// BatchedSplit is the partition MPI layout, empty for no split; BatchedSplitNode selects
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// one partition per node. Default from the command line; callers may override.
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Coordinate BatchedSplit;
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bool BatchedSplitNode;
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// one partition per node. Fixed at construction, default from the command line.
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const Coordinate BatchedSplit;
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const bool BatchedSplitNode;
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// Copy of Linop_f on the partitions, made once at construction and owned; nullptr when
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// there is no split or the operator cannot be split. It holds the gauge field as it was at
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// construction: a solver must not outlive a change of the operator's gauge field. The
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// outer defect correction uses Linop_d, so a stale copy would cost convergence, not
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// correctness.
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SplitOperator<FieldF> *split = nullptr;
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int Partitions = 1;
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MixedPrecisionConjugateGradientBatched(RealD tol,
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Integer maxinnerit,
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@@ -64,11 +72,37 @@ public:
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GridBase* _sp_grid,
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LinearOperatorBase<FieldF> &_Linop_f,
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LinearOperatorBase<FieldD> &_Linop_d,
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bool _updateResidual=true) :
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bool _updateResidual=true,
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const Coordinate &_split=GridDefaultBatchedSolverSplit(),
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bool _split_node=GridDefaultBatchedSolverSplitNode()) :
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Linop_f(_Linop_f), Linop_d(_Linop_d),
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Tolerance(tol), InnerTolerance(tol), MaxInnerIterations(maxinnerit), MaxOuterIterations(maxouterit), MaxPatchupIterations(maxpatchit), SinglePrecGrid(_sp_grid),
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OuterLoopNormMult(100.), guesser(NULL), updateResidual(_updateResidual),
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BatchedSplit(GridDefaultBatchedSolverSplit()), BatchedSplitNode(GridDefaultBatchedSolverSplitNode()) { };
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BatchedSplit(_split), BatchedSplitNode(_split_node)
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{
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Coordinate layout = BatchedSolverSplitLayout(SinglePrecGrid,BatchedSplit,BatchedSplitNode,Partitions);
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if ( Partitions > 1 ) {
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double t0 = usecond();
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split = Linop_f.SplitClone(layout);
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double t1 = usecond();
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if ( split == nullptr ) {
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std::cout << GridLogMessage << "MixedPrecisionConjugateGradientBatched: operator cannot be split; serial inner solves" << std::endl;
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} else {
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std::cout << GridLogMessage << "MixedPrecisionConjugateGradientBatched: split clone " << (t1-t0)/1.0e6 << " s" << std::endl;
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HostMemoryReport(SinglePrecGrid,GridLogMessage,"MixedPrecisionConjugateGradientBatched: after split clone");
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}
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}
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};
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// Owns split
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MixedPrecisionConjugateGradientBatched(const MixedPrecisionConjugateGradientBatched &) = delete;
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MixedPrecisionConjugateGradientBatched &operator=(const MixedPrecisionConjugateGradientBatched &) = delete;
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~MixedPrecisionConjugateGradientBatched(void)
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{
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delete split;
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}
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void useGuesser(LinearFunction<FieldF> &g){
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guesser = &g;
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@@ -98,6 +132,8 @@ public:
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GridStopWatch InnerCGtimer;
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GridStopWatch PrecChangeTimer;
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GridStopWatch OuterResidualTimer;
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GridStopWatch PatchupTimer;
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int cb = src_d_in[0].Checkerboard();
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@@ -137,18 +173,10 @@ public:
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ConjugateGradient<FieldF> CG_f(inner_tol, MaxInnerIterations);
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CG_f.ErrorOnNoConverge = false;
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//Optionally clone the single precision operator onto split-communicator partitions
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GridStopWatch SplitTimer;
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SplitOperator<FieldF> *split = nullptr;
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int partitions;
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Coordinate layout = BatchedSolverSplitLayout(SinglePrecGrid,BatchedSplit,BatchedSplitNode,NBatch,partitions);
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if ( partitions > 1 ) {
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SplitTimer.Start();
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split = Linop_f.SplitClone(layout);
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SplitTimer.Stop();
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if ( split == nullptr ) {
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std::cout << GridLogMessage << "MixedPrecisionConjugateGradientBatched: operator cannot be split; serial inner solves" << std::endl;
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}
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SplitTimers splitTimers;
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if ( split != nullptr && split->Partitions > NBatch ) {
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std::cout << GridLogWarning << "MixedPrecisionConjugateGradientBatched: " << split->Partitions << " partitions for "
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<< NBatch << " right-hand sides; the extra partitions only solve zero padding" << std::endl;
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}
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Integer &outer_iter = TotalOuterIterations; //so it will be equal to the final iteration count
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@@ -156,13 +184,16 @@ public:
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for(outer_iter = 0; outer_iter < MaxOuterIterations; outer_iter++){
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std::cout << GridLogMessage << std::endl;
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std::cout << GridLogMessage << "Outer iteration " << outer_iter << std::endl;
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HostMemoryReport(DoublePrecGrid,GridLogMessage,"MixedPrecisionConjugateGradientBatched: outer iteration "+std::to_string(outer_iter));
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bool allConverged = true;
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for (int i=0; i<NBatch; i++) {
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//Compute double precision rsd and also new RHS vector.
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OuterResidualTimer.Start();
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Linop_d.HermOp(sol_d[i], tmp_d);
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norm[i] = axpy_norm(src_d[i], -1., tmp_d, src_d_in[i]); //src_d is residual vector
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OuterResidualTimer.Stop();
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std::cout<<GridLogMessage<<"MixedPrecisionConjugateGradientBatched: Outer iteration " << outer_iter <<" solve " << i << " residual "<< norm[i] << " target "<< stop[i] <<std::endl;
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@@ -191,7 +222,7 @@ public:
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}
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if ( split != nullptr ) {
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InnerSplitSolves(*split, CG_f, src_f, sol_f, TotalInnerIterations, InnerCGtimer, SplitTimer);
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InnerSplitSolves(*split, CG_f, src_f, sol_f, TotalInnerIterations, InnerCGtimer, splitTimers);
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}
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for (int i=0; i<NBatch; i++) {
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@@ -213,17 +244,17 @@ public:
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}
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delete split;
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//Final trial CG
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std::cout << GridLogMessage << std::endl;
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std::cout<<GridLogMessage<<"MixedPrecisionConjugateGradientBatched: Starting final patch-up double-precision solve"<<std::endl;
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PatchupTimer.Start();
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for (int i=0; i<NBatch; i++) {
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ConjugateGradient<FieldD> CG_d(Tolerance, MaxPatchupIterations);
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CG_d(Linop_d, src_d_in[i], sol_d[i]);
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TotalFinalStepIterations[i] += CG_d.IterationsToComplete;
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}
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PatchupTimer.Stop();
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TotalTimer.Stop();
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@@ -232,12 +263,36 @@ public:
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std::cout<<GridLogMessage<<"MixedPrecisionConjugateGradientBatched: solve " << i << " Inner CG iterations " << TotalInnerIterations[i] << " Restarts " << TotalOuterIterations << " Final CG iterations " << TotalFinalStepIterations[i] << std::endl;
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}
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std::cout << GridLogMessage << std::endl;
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std::cout<<GridLogMessage<<"MixedPrecisionConjugateGradientBatched: Total time " << TotalTimer.Elapsed() << " Precision change " << PrecChangeTimer.Elapsed() << " Inner CG total " << InnerCGtimer.Elapsed() << " Split setup and transfer " << SplitTimer.Elapsed() << std::endl;
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std::cout<<GridLogMessage<<"MixedPrecisionConjugateGradientBatched: Total time " << TotalTimer.Elapsed() << " Precision change " << PrecChangeTimer.Elapsed() << " Inner CG total " << InnerCGtimer.Elapsed() << std::endl;
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std::cout<<GridLogMessage<<"MixedPrecisionConjugateGradientBatched: Outer residual " << OuterResidualTimer.Elapsed() << " Patch-up " << PatchupTimer.Elapsed() << std::endl;
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if ( split != nullptr ) {
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std::cout<<GridLogMessage<<"MixedPrecisionConjugateGradientBatched: Grid_split " << splitTimers.Split.Elapsed() << " (" << splitTimers.SplitCalls << " calls)"
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<< " Grid_unsplit " << splitTimers.Unsplit.Elapsed() << " (" << splitTimers.UnsplitCalls << " calls)"
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<< " Staging copies " << splitTimers.Staging.Elapsed()
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<< " Host to device " << splitTimers.H2D.Elapsed()
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<< " Iteration count sum " << splitTimers.Reduce.Elapsed() << std::endl;
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}
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double accounted = PrecChangeTimer.useconds() + InnerCGtimer.useconds() + OuterResidualTimer.useconds()
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+ PatchupTimer.useconds() + splitTimers.Split.useconds()
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+ splitTimers.Unsplit.useconds() + splitTimers.Staging.useconds() + splitTimers.H2D.useconds()
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+ splitTimers.Reduce.useconds();
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std::cout<<GridLogMessage<<"MixedPrecisionConjugateGradientBatched: Unaccounted " << (TotalTimer.useconds()-accounted)/1.0e6 << " s" << std::endl;
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}
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private:
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// Coarse breakdown of the split path outside the inner CG
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struct SplitTimers {
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GridStopWatch Split;
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GridStopWatch Unsplit;
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GridStopWatch Staging;
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GridStopWatch H2D;
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GridStopWatch Reduce;
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int SplitCalls = 0;
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int UnsplitCalls = 0;
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};
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////////////////////////////////////////////////////////////////////////////////////////
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// One inner solve per partition, in groups of Partitions right-hand sides. The last
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// group is zero-padded; a zero source returns at once from CG. Collective.
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@@ -248,7 +303,7 @@ private:
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std::vector<FieldF> &sol_f,
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std::vector<Integer> &TotalInnerIterations,
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GridStopWatch &InnerCGtimer,
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GridStopWatch &SplitTimer)
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SplitTimers &timers)
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{
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int NBatch = src_f.size();
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int P = split.Partitions;
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@@ -263,6 +318,7 @@ private:
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for(int g=0;g<NBatch;g+=P){
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// Gather the group; zero-pad past the end of the batch
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timers.Staging.Start();
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for(int p=0;p<P;p++){
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group_src[p].Checkerboard() = cb;
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group_sol[p].Checkerboard() = cb;
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@@ -274,22 +330,34 @@ private:
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group_sol[p] = Zero();
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}
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}
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timers.Staging.Stop();
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// The initial guess (e.g. from the guesser) travels with the source
|
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SplitTimer.Start();
|
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timers.Split.Start();
|
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Grid_split(group_src,s_src);
|
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Grid_split(group_sol,s_sol);
|
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SplitTimer.Stop();
|
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timers.Split.Stop();
|
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timers.SplitCalls += 2;
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|
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// Grid_split leaves its output on the host; move it now so the copy is not in the CG time
|
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timers.H2D.Start();
|
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{
|
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autoView(s_src_v, s_src, AcceleratorRead);
|
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autoView(s_sol_v, s_sol, AcceleratorRead);
|
||||
}
|
||||
timers.H2D.Stop();
|
||||
|
||||
InnerCGtimer.Start();
|
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CG_f(*split.Linop,s_src,s_sol);
|
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InnerCGtimer.Stop();
|
||||
|
||||
SplitTimer.Start();
|
||||
timers.Unsplit.Start();
|
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Grid_unsplit(group_sol,s_sol);
|
||||
SplitTimer.Stop();
|
||||
timers.Unsplit.Stop();
|
||||
timers.UnsplitCalls += 1;
|
||||
|
||||
// One iteration count per partition, contributed by the partition's rank 0 only
|
||||
timers.Reduce.Start();
|
||||
for(int p=0;p<P;p++){
|
||||
iters[p] = 0;
|
||||
}
|
||||
@@ -297,11 +365,15 @@ private:
|
||||
iters[split.Partition] = CG_f.IterationsToComplete;
|
||||
}
|
||||
SinglePrecGrid->GlobalSumVector(&iters[0],P);
|
||||
timers.Reduce.Stop();
|
||||
|
||||
// Includes the host to device copy of group_sol left by Grid_unsplit
|
||||
timers.Staging.Start();
|
||||
for(int p=0;p<P && g+p<NBatch;p++){
|
||||
sol_f[g+p] = group_sol[p];
|
||||
TotalInnerIterations[g+p] += iters[p];
|
||||
}
|
||||
timers.Staging.Stop();
|
||||
}
|
||||
}
|
||||
};
|
||||
|
||||
+287
-246
@@ -1550,174 +1550,277 @@ void precisionChange(Lattice<VobjOut> &out, const Lattice<VobjIn> &in){
|
||||
////////////////////////////////////////////////////////////////////////////////
|
||||
// Communicate between grids
|
||||
////////////////////////////////////////////////////////////////////////////////
|
||||
///////////////////////////////////////////////////////////////////////////////////////////////////////////
|
||||
// SIMPLE CASE:
|
||||
///////////////////////////////////////////////////////////////////////////////////////////////////////////
|
||||
/////////////////////////////////////////////////////////////////////////////////////////////
|
||||
// Grid_split / Grid_unsplit
|
||||
//
|
||||
// Mesh of nodes (2x2) ; subdivide to 1x1 subdivisions
|
||||
// The split grid divides the full grid's processor layout Pf into partitions of layout
|
||||
// Ps; ratio R = Pf/Ps per dimension, nvector = prod R partitions. A rank at full processor
|
||||
// coordinate c belongs to partition q = c/Ps at split coordinate s = c%Ps, and partition q
|
||||
// holds vector index lex(q,R) (GridSplitVectorIndex). Local volumes satisfy
|
||||
// Ls = Lf * R per dimension.
|
||||
//
|
||||
// Lex ord:
|
||||
// N0 va0 vb0 vc0 vd0 N1 va1 vb1 vc1 vd1
|
||||
// N2 va2 vb2 vc2 vd2 N3 va3 vb3 vc3 vd3
|
||||
// Every full-grid rank's local block of field v lies wholly inside one split-grid rank's
|
||||
// local volume, in the sub-box at offset o = c%R (units of Lf), on the rank of partition
|
||||
// q(v) at split coordinate c/R. The redistribution is therefore nvector whole-block
|
||||
// point-to-point exchanges, nothing finer, and no data moves twice. Step k (a coordinate in
|
||||
// the R box) pairs every rank with one sender and one receiver:
|
||||
//
|
||||
// Ratio = full[dim] / split[dim]
|
||||
// send field q = (c%R + k)%R to full coordinate q*Ps + c/R
|
||||
// recv sub-box o = (c/Ps - k)%R from full coordinate (c%Ps)*R + o
|
||||
//
|
||||
// For each dimension do an all to all; get Nvec -> Nvec / ratio
|
||||
// Ldim -> Ldim * ratio
|
||||
// LocalVol -> LocalVol * ratio
|
||||
// full AllToAll(0)
|
||||
// N0 va0 vb0 va1 vb1 N1 vc0 vd0 vc1 vd1
|
||||
// N2 va2 vb2 va3 vb3 N3 vc2 vd2 vc3 vd3
|
||||
// Within a step the send map is a permutation of the ranks and the receive map is its
|
||||
// inverse, so each step is one symmetric SendToRecvFrom per rank; a rank paired with
|
||||
// itself copies locally. Grid_unsplit runs the same steps with the roles exchanged.
|
||||
//
|
||||
// REARRANGE
|
||||
// N0 va01 vb01 N1 vc01 vd01
|
||||
// N2 va23 vb23 N3 vc23 vd23
|
||||
//
|
||||
// full AllToAll(1) // Not what is wanted. FIXME
|
||||
// N0 va01 va23 N1 vc01 vc23
|
||||
// N2 vb01 vb23 N3 vd01 vd23
|
||||
//
|
||||
// REARRANGE
|
||||
// N0 va0123 N1 vc0123
|
||||
// N2 vb0123 N3 vd0123
|
||||
//
|
||||
// Must also rearrange data to get into the NEW lex order of grid at each stage. Some kind of "insert/extract".
|
||||
// NB: Easiest to programme if keep in lex order.
|
||||
/*
|
||||
* Let chunk = (fvol*nvec)/sP be size of a chunk. ( Divide lexico vol * nvec into fP/sP = M chunks )
|
||||
*
|
||||
* 2nd A2A (over sP nodes; subdivide the fP into sP chunks of M)
|
||||
*
|
||||
* node 0 1st chunk of node 0M..(1M-1); 2nd chunk of node 0M..(1M-1).. data chunk x M x sP = fL / sP * M * sP = fL * M growth
|
||||
* node 1 1st chunk of node 1M..(2M-1); 2nd chunk of node 1M..(2M-1)..
|
||||
* node 2 1st chunk of node 2M..(3M-1); 2nd chunk of node 2M..(3M-1)..
|
||||
* node 3 1st chunk of node 3M..(3M-1); 2nd chunk of node 2M..(3M-1)..
|
||||
* etc...
|
||||
*/
|
||||
// Data stays on the device. A block on the full grid is the local volume in lexicographic
|
||||
// order; the split grid's local volume is staged box-major (sub-box index, then
|
||||
// lexicographic within the sub-box), so every exchanged block is contiguous. Packing and
|
||||
// unpacking are accelerator kernels. Buffers are deviceVectors: the staged split volume
|
||||
// plus one block. Without ACCELERATOR_AWARE_MPI each block is staged through host memory.
|
||||
/////////////////////////////////////////////////////////////////////////////////////////////
|
||||
|
||||
// Scalar sites of in, written to buf in box-major order: sub-boxes of extent bdims taken
|
||||
// lexicographically, sites lexicographically within each. bdims = local dimensions gives
|
||||
// plain lexicographic order.
|
||||
template<class vobj>
|
||||
void GridSplitUnvectorise(const Lattice<vobj> &in,typename vobj::scalar_object *buf,const Coordinate &bdims)
|
||||
{
|
||||
GridBase *grid = in.Grid();
|
||||
int nd = grid->_ndimension;
|
||||
Coordinate rdims = grid->_rdimensions;
|
||||
Coordinate simd = grid->_simd_layout;
|
||||
Coordinate nbox(nd);
|
||||
int64_t bvol = 1;
|
||||
for(int d=0;d<nd;d++){
|
||||
GRID_ASSERT( (grid->_ldimensions[d] % bdims[d]) == 0 );
|
||||
nbox[d] = grid->_ldimensions[d] / bdims[d];
|
||||
bvol *= bdims[d];
|
||||
}
|
||||
const int Nsimd = grid->Nsimd();
|
||||
autoView( in_v , in, AcceleratorRead);
|
||||
accelerator_for(ss, grid->oSites(), 1, {
|
||||
Coordinate ocoor(nd);
|
||||
Coordinate icoor(nd);
|
||||
Coordinate bcoor(nd);
|
||||
Coordinate wcoor(nd);
|
||||
Lexicographic::CoorFromIndex(ocoor,ss,rdims);
|
||||
for(int lane=0;lane<Nsimd;lane++){
|
||||
Lexicographic::CoorFromIndex(icoor,lane,simd);
|
||||
for(int d=0;d<nd;d++){
|
||||
int l = ocoor[d] + rdims[d]*icoor[d];
|
||||
bcoor[d] = l / bdims[d];
|
||||
wcoor[d] = l % bdims[d];
|
||||
}
|
||||
int64_t b;
|
||||
int64_t w;
|
||||
Lexicographic::IndexFromCoor(bcoor,b,nbox);
|
||||
Lexicographic::IndexFromCoor(wcoor,w,bdims);
|
||||
buf[b*bvol+w] = extractLane(lane,in_v[ss]);
|
||||
}
|
||||
});
|
||||
}
|
||||
|
||||
// Inverse of GridSplitUnvectorise: every site of out is written
|
||||
template<class vobj>
|
||||
void GridSplitVectorise(const typename vobj::scalar_object *buf,Lattice<vobj> &out,const Coordinate &bdims)
|
||||
{
|
||||
GridBase *grid = out.Grid();
|
||||
int nd = grid->_ndimension;
|
||||
Coordinate rdims = grid->_rdimensions;
|
||||
Coordinate simd = grid->_simd_layout;
|
||||
Coordinate nbox(nd);
|
||||
int64_t bvol = 1;
|
||||
for(int d=0;d<nd;d++){
|
||||
GRID_ASSERT( (grid->_ldimensions[d] % bdims[d]) == 0 );
|
||||
nbox[d] = grid->_ldimensions[d] / bdims[d];
|
||||
bvol *= bdims[d];
|
||||
}
|
||||
const int Nsimd = grid->Nsimd();
|
||||
autoView( out_v , out, AcceleratorWriteDiscard);
|
||||
accelerator_for(ss, grid->oSites(), 1, {
|
||||
Coordinate ocoor(nd);
|
||||
Coordinate icoor(nd);
|
||||
Coordinate bcoor(nd);
|
||||
Coordinate wcoor(nd);
|
||||
Lexicographic::CoorFromIndex(ocoor,ss,rdims);
|
||||
for(int lane=0;lane<Nsimd;lane++){
|
||||
Lexicographic::CoorFromIndex(icoor,lane,simd);
|
||||
for(int d=0;d<nd;d++){
|
||||
int l = ocoor[d] + rdims[d]*icoor[d];
|
||||
bcoor[d] = l / bdims[d];
|
||||
wcoor[d] = l % bdims[d];
|
||||
}
|
||||
int64_t b;
|
||||
int64_t w;
|
||||
Lexicographic::IndexFromCoor(bcoor,b,nbox);
|
||||
Lexicographic::IndexFromCoor(wcoor,w,bdims);
|
||||
insertLane(lane,out_v[ss],buf[b*bvol+w]);
|
||||
}
|
||||
});
|
||||
}
|
||||
|
||||
// Step schedule shared by Grid_split and Grid_unsplit; see the description above
|
||||
class GridSplitSchedule
|
||||
{
|
||||
public:
|
||||
int nd;
|
||||
int nvector;
|
||||
Coordinate ratio; // R
|
||||
Coordinate fldims; // full grid local dimensions = sub-box extent on the split grid
|
||||
GridBase *full_grid;
|
||||
|
||||
// Step k: this rank sends field Field(k) to rank FieldRank(k) and receives sub-box
|
||||
// Box(k) from rank BoxRank(k) (Grid_split); Grid_unsplit reverses both
|
||||
std::vector<int> Field;
|
||||
std::vector<int> FieldRank;
|
||||
std::vector<int> Box;
|
||||
std::vector<int> BoxRank;
|
||||
|
||||
GridSplitSchedule(GridBase *_full_grid,GridBase *split_grid) : full_grid(_full_grid)
|
||||
{
|
||||
nd = full_grid->_ndimension;
|
||||
GRID_ASSERT(split_grid->_ndimension == nd);
|
||||
ratio.resize(nd);
|
||||
fldims = full_grid->_ldimensions;
|
||||
Coordinate sprocs = split_grid->_processors;
|
||||
Coordinate fcoor = full_grid->_processor_coor;
|
||||
nvector = 1;
|
||||
for(int d=0;d<nd;d++){
|
||||
GRID_ASSERT(full_grid->_gdimensions[d] == split_grid->_gdimensions[d]);
|
||||
GRID_ASSERT(full_grid->_fdimensions[d] == split_grid->_fdimensions[d]);
|
||||
GRID_ASSERT( (full_grid->_processors[d] % sprocs[d]) == 0 );
|
||||
ratio[d] = full_grid->_processors[d] / sprocs[d];
|
||||
GRID_ASSERT(split_grid->_ldimensions[d] == fldims[d]*ratio[d]);
|
||||
nvector *= ratio[d];
|
||||
}
|
||||
GRID_ASSERT(nvector*split_grid->_Nprocessors == full_grid->_Nprocessors);
|
||||
|
||||
Field.resize(nvector);
|
||||
FieldRank.resize(nvector);
|
||||
Box.resize(nvector);
|
||||
BoxRank.resize(nvector);
|
||||
for(int k=0;k<nvector;k++){
|
||||
Coordinate kc(nd);
|
||||
Coordinate q(nd);
|
||||
Coordinate dest(nd);
|
||||
Coordinate o(nd);
|
||||
Coordinate from(nd);
|
||||
Lexicographic::CoorFromIndex(kc,k,ratio);
|
||||
for(int d=0;d<nd;d++){
|
||||
q[d] = (fcoor[d] % ratio[d] + kc[d]) % ratio[d];
|
||||
dest[d] = q[d]*sprocs[d] + fcoor[d] / ratio[d];
|
||||
o[d] = (fcoor[d] / sprocs[d] - kc[d] + ratio[d]) % ratio[d];
|
||||
from[d] = (fcoor[d] % sprocs[d])*ratio[d] + o[d];
|
||||
}
|
||||
Lexicographic::IndexFromCoor(q,Field[k],ratio);
|
||||
Lexicographic::IndexFromCoor(o,Box[k],ratio);
|
||||
FieldRank[k] = full_grid->RankFromProcessorCoor(dest);
|
||||
BoxRank[k] = full_grid->RankFromProcessorCoor(from);
|
||||
}
|
||||
}
|
||||
|
||||
// One step's exchange; returns the bytes that left this rank
|
||||
uint64_t Exchange(void *xmit,int dest,void *recv,int from,uint64_t bytes)
|
||||
{
|
||||
int me = full_grid->ThisRank();
|
||||
// The send map is a permutation and the receive map its inverse: self pairs with self
|
||||
GRID_ASSERT( (dest == me) == (from == me) );
|
||||
if ( dest == me ) {
|
||||
acceleratorCopyDeviceToDevice(xmit,recv,bytes);
|
||||
return 0;
|
||||
}
|
||||
GRID_ASSERT( (bytes % sizeof(int32_t)) == 0 );
|
||||
GRID_ASSERT( bytes/sizeof(int32_t) < (1ULL<<31) ); // SendToRecvFrom counts int32 words
|
||||
#ifdef ACCELERATOR_AWARE_MPI
|
||||
full_grid->SendToRecvFrom(xmit,dest,recv,from,bytes);
|
||||
#else
|
||||
std::vector<char> hxmit(bytes);
|
||||
std::vector<char> hrecv(bytes);
|
||||
acceleratorCopyFromDevice(xmit,&hxmit[0],bytes);
|
||||
full_grid->SendToRecvFrom(&hxmit[0],dest,&hrecv[0],from,bytes);
|
||||
acceleratorCopyToDevice(&hrecv[0],recv,bytes);
|
||||
#endif
|
||||
return bytes;
|
||||
}
|
||||
};
|
||||
|
||||
// Common body: full[v] may alias one another (the single field overload)
|
||||
template<class Vobj>
|
||||
void Grid_split(std::vector<Lattice<Vobj> > & full,Lattice<Vobj> & split)
|
||||
void Grid_split(const std::vector<const Lattice<Vobj> *> &full,Lattice<Vobj> &split)
|
||||
{
|
||||
typedef typename Vobj::scalar_object Sobj;
|
||||
|
||||
int full_vecs = full.size();
|
||||
|
||||
GRID_ASSERT(full_vecs>=1);
|
||||
|
||||
GridBase * full_grid = full[0].Grid();
|
||||
GRID_ASSERT(full.size()>=1);
|
||||
GridBase *full_grid = full[0]->Grid();
|
||||
GridBase *split_grid = split.Grid();
|
||||
|
||||
int ndim = full_grid->_ndimension;
|
||||
int full_nproc = full_grid->_Nprocessors;
|
||||
int split_nproc =split_grid->_Nprocessors;
|
||||
|
||||
////////////////////////////////
|
||||
// Checkerboard management
|
||||
////////////////////////////////
|
||||
int cb = full[0].Checkerboard();
|
||||
int cb = full[0]->Checkerboard();
|
||||
split.Checkerboard() = cb;
|
||||
|
||||
//////////////////////////////
|
||||
// Checks
|
||||
//////////////////////////////
|
||||
GRID_ASSERT(full_grid->_ndimension==split_grid->_ndimension);
|
||||
for(int n=0;n<full_vecs;n++){
|
||||
GRID_ASSERT(full[n].Checkerboard() == cb);
|
||||
for(int d=0;d<ndim;d++){
|
||||
GRID_ASSERT(full[n].Grid()->_gdimensions[d]==split.Grid()->_gdimensions[d]);
|
||||
GRID_ASSERT(full[n].Grid()->_fdimensions[d]==split.Grid()->_fdimensions[d]);
|
||||
}
|
||||
for(int n=0;n<full.size();n++){
|
||||
GRID_ASSERT(full[n]->Grid() == full_grid);
|
||||
GRID_ASSERT(full[n]->Checkerboard() == cb);
|
||||
}
|
||||
|
||||
int nvector =full_nproc/split_nproc;
|
||||
GRID_ASSERT(nvector*split_nproc==full_nproc);
|
||||
GRID_ASSERT(nvector == full_vecs);
|
||||
double t_start = usecond();
|
||||
GridSplitSchedule sched(full_grid,split_grid);
|
||||
GRID_ASSERT(sched.nvector == full.size());
|
||||
|
||||
Coordinate ratio(ndim);
|
||||
for(int d=0;d<ndim;d++){
|
||||
ratio[d] = full_grid->_processors[d]/ split_grid->_processors[d];
|
||||
uint64_t fvol = full_grid->lSites();
|
||||
uint64_t bytes = fvol*sizeof(Sobj);
|
||||
deviceVector<Sobj> staged(split_grid->lSites());
|
||||
deviceVector<Sobj> block(fvol);
|
||||
Sobj *staged_p = &staged[0];
|
||||
Sobj *block_p = &block[0];
|
||||
double t_alloc = usecond() - t_start;
|
||||
|
||||
double t_pack = 0;
|
||||
double t_comm = 0;
|
||||
uint64_t offrank = 0;
|
||||
for(int k=0;k<sched.nvector;k++){
|
||||
double t0 = usecond();
|
||||
GridSplitUnvectorise(*full[sched.Field[k]],block_p,full_grid->_ldimensions);
|
||||
double t1 = usecond();
|
||||
offrank += sched.Exchange((void *)block_p,sched.FieldRank[k],
|
||||
(void *)&staged_p[sched.Box[k]*fvol],sched.BoxRank[k],bytes);
|
||||
double t2 = usecond();
|
||||
t_pack += t1-t0;
|
||||
t_comm += t2-t1;
|
||||
}
|
||||
|
||||
uint64_t lsites = full_grid->lSites();
|
||||
uint64_t sz = lsites * nvector;
|
||||
std::vector<Sobj> tmpdata(sz);
|
||||
std::vector<Sobj> alldata(sz);
|
||||
std::vector<Sobj> scalardata(lsites);
|
||||
double t0 = usecond();
|
||||
GridSplitVectorise(staged_p,split,sched.fldims);
|
||||
double t_unpack = usecond() - t0;
|
||||
double t_total = usecond() - t_start;
|
||||
|
||||
for(int v=0;v<nvector;v++){
|
||||
unvectorizeToLexOrdArray(scalardata,full[v]);
|
||||
thread_for(site,lsites,{
|
||||
alldata[v*lsites+site] = scalardata[site];
|
||||
});
|
||||
std::cout << GridLogPerformance << "Grid_split: " << sched.nvector << " x " << bytes/1.0e6
|
||||
<< " MB/rank total " << t_total/1.0e6 << " s : alloc " << t_alloc/1.0e6
|
||||
<< " pack " << t_pack/1.0e6
|
||||
<< " exchange " << t_comm/1.0e6 << " (" << offrank/1.0e6 << " MB off rank, "
|
||||
<< offrank/(t_comm+1.0e-9)/1.0e3 << " GB/s)"
|
||||
<< " unpack " << t_unpack/1.0e6 << std::endl;
|
||||
// Staging buffers are still live here, so this is the high-water point of the call
|
||||
if ( GridLogPerformance.isActive() ) {
|
||||
HostMemoryReport(full_grid,GridLogPerformance,"Grid_split");
|
||||
}
|
||||
|
||||
int nvec = nvector; // Counts down to 1 as we collapse dims
|
||||
Coordinate ldims = full_grid->_ldimensions;
|
||||
|
||||
for(int d=ndim-1;d>=0;d--){
|
||||
|
||||
if ( ratio[d] != 1 ) {
|
||||
|
||||
full_grid ->AllToAll(d,alldata,tmpdata);
|
||||
if ( split_grid->_processors[d] > 1 ) {
|
||||
alldata=tmpdata;
|
||||
split_grid->AllToAll(d,alldata,tmpdata);
|
||||
}
|
||||
|
||||
auto rdims = ldims;
|
||||
auto M = ratio[d];
|
||||
auto rsites= lsites*M;// increases rsites by M
|
||||
nvec /= M; // Reduce nvec by subdivision factor
|
||||
rdims[d] *= M; // increase local dim by same factor
|
||||
|
||||
int sP = split_grid->_processors[d];
|
||||
int fP = full_grid->_processors[d];
|
||||
|
||||
int fvol = lsites;
|
||||
|
||||
int chunk = (nvec*fvol)/sP; GRID_ASSERT(chunk*sP == nvec*fvol);
|
||||
|
||||
// Loop over reordered data post A2A
|
||||
thread_for(c, chunk, {
|
||||
Coordinate coor(ndim);
|
||||
for(int m=0;m<M;m++){
|
||||
for(int s=0;s<sP;s++){
|
||||
|
||||
// addressing; use lexico
|
||||
int lex_r;
|
||||
uint64_t lex_c = c+chunk*m+chunk*M*s;
|
||||
uint64_t lex_fvol_vec = c+chunk*s;
|
||||
uint64_t lex_fvol = lex_fvol_vec%fvol;
|
||||
uint64_t lex_vec = lex_fvol_vec/fvol;
|
||||
|
||||
// which node sets an adder to the coordinate
|
||||
Lexicographic::CoorFromIndex(coor, lex_fvol, ldims);
|
||||
coor[d] += m*ldims[d];
|
||||
Lexicographic::IndexFromCoor(coor, lex_r, rdims);
|
||||
lex_r += lex_vec * rsites;
|
||||
|
||||
// LexicoFind coordinate & vector number within split lattice
|
||||
alldata[lex_r] = tmpdata[lex_c];
|
||||
|
||||
}
|
||||
}
|
||||
});
|
||||
ldims[d]*= ratio[d];
|
||||
lsites *= ratio[d];
|
||||
|
||||
}
|
||||
}
|
||||
vectorizeFromLexOrdArray(alldata,split);
|
||||
}
|
||||
|
||||
template<class Vobj>
|
||||
void Grid_split(std::vector<Lattice<Vobj> > & full,Lattice<Vobj> & split)
|
||||
{
|
||||
std::vector<const Lattice<Vobj> *> full_p(full.size());
|
||||
for(int n=0;n<full.size();n++){
|
||||
full_p[n] = &full[n];
|
||||
}
|
||||
Grid_split(full_p,split);
|
||||
}
|
||||
|
||||
// The same field to every partition
|
||||
template<class Vobj>
|
||||
void Grid_split(Lattice<Vobj> &full,Lattice<Vobj> & split)
|
||||
{
|
||||
int nvector = full.Grid()->_Nprocessors / split.Grid()->_Nprocessors;
|
||||
std::vector<Lattice<Vobj> > full_v(nvector,full.Grid());
|
||||
for(int n=0;n<nvector;n++){
|
||||
full_v[n] = full;
|
||||
}
|
||||
Grid_split(full_v,split);
|
||||
std::vector<const Lattice<Vobj> *> full_p(nvector,&full);
|
||||
Grid_split(full_p,split);
|
||||
}
|
||||
|
||||
template<class Vobj>
|
||||
@@ -1725,119 +1828,57 @@ void Grid_unsplit(std::vector<Lattice<Vobj> > & full,Lattice<Vobj> & split)
|
||||
{
|
||||
typedef typename Vobj::scalar_object Sobj;
|
||||
|
||||
int full_vecs = full.size();
|
||||
|
||||
GRID_ASSERT(full_vecs>=1);
|
||||
|
||||
GridBase * full_grid = full[0].Grid();
|
||||
GRID_ASSERT(full.size()>=1);
|
||||
GridBase *full_grid = full[0].Grid();
|
||||
GridBase *split_grid = split.Grid();
|
||||
|
||||
int ndim = full_grid->_ndimension;
|
||||
int full_nproc = full_grid->_Nprocessors;
|
||||
int split_nproc =split_grid->_Nprocessors;
|
||||
|
||||
////////////////////////////////
|
||||
// Checkerboard management
|
||||
////////////////////////////////
|
||||
int cb = full[0].Checkerboard();
|
||||
split.Checkerboard() = cb;
|
||||
|
||||
//////////////////////////////
|
||||
// Checks
|
||||
//////////////////////////////
|
||||
GRID_ASSERT(full_grid->_ndimension==split_grid->_ndimension);
|
||||
for(int n=0;n<full_vecs;n++){
|
||||
for(int n=0;n<full.size();n++){
|
||||
GRID_ASSERT(full[n].Grid() == full_grid);
|
||||
GRID_ASSERT(full[n].Checkerboard() == cb);
|
||||
for(int d=0;d<ndim;d++){
|
||||
GRID_ASSERT(full[n].Grid()->_gdimensions[d]==split.Grid()->_gdimensions[d]);
|
||||
GRID_ASSERT(full[n].Grid()->_fdimensions[d]==split.Grid()->_fdimensions[d]);
|
||||
}
|
||||
}
|
||||
|
||||
int nvector =full_nproc/split_nproc;
|
||||
GRID_ASSERT(nvector*split_nproc==full_nproc);
|
||||
GRID_ASSERT(nvector == full_vecs);
|
||||
double t_start = usecond();
|
||||
GridSplitSchedule sched(full_grid,split_grid);
|
||||
GRID_ASSERT(sched.nvector == full.size());
|
||||
|
||||
Coordinate ratio(ndim);
|
||||
for(int d=0;d<ndim;d++){
|
||||
ratio[d] = full_grid->_processors[d]/ split_grid->_processors[d];
|
||||
uint64_t fvol = full_grid->lSites();
|
||||
uint64_t bytes = fvol*sizeof(Sobj);
|
||||
deviceVector<Sobj> staged(split_grid->lSites());
|
||||
deviceVector<Sobj> block(fvol);
|
||||
Sobj *staged_p = &staged[0];
|
||||
Sobj *block_p = &block[0];
|
||||
double t_alloc = usecond() - t_start;
|
||||
|
||||
double t0 = usecond();
|
||||
GridSplitUnvectorise(split,staged_p,sched.fldims);
|
||||
double t_pack = usecond() - t0;
|
||||
|
||||
double t_comm = 0;
|
||||
double t_unpack = 0;
|
||||
uint64_t offrank = 0;
|
||||
for(int k=0;k<sched.nvector;k++){
|
||||
double t1 = usecond();
|
||||
offrank += sched.Exchange((void *)&staged_p[sched.Box[k]*fvol],sched.BoxRank[k],
|
||||
(void *)block_p,sched.FieldRank[k],bytes);
|
||||
double t2 = usecond();
|
||||
GridSplitVectorise(block_p,full[sched.Field[k]],full_grid->_ldimensions);
|
||||
double t3 = usecond();
|
||||
t_comm += t2-t1;
|
||||
t_unpack += t3-t2;
|
||||
}
|
||||
double t_total = usecond() - t_start;
|
||||
|
||||
uint64_t lsites = full_grid->lSites();
|
||||
uint64_t sz = lsites * nvector;
|
||||
std::vector<Sobj> tmpdata(sz);
|
||||
std::vector<Sobj> alldata(sz);
|
||||
std::vector<Sobj> scalardata(lsites);
|
||||
|
||||
unvectorizeToLexOrdArray(alldata,split);
|
||||
|
||||
/////////////////////////////////////////////////////////////////
|
||||
// Start from split grid and work towards full grid
|
||||
/////////////////////////////////////////////////////////////////
|
||||
|
||||
int nvec = 1;
|
||||
uint64_t rsites = split_grid->lSites();
|
||||
Coordinate rdims = split_grid->_ldimensions;
|
||||
|
||||
for(int d=0;d<ndim;d++){
|
||||
|
||||
if ( ratio[d] != 1 ) {
|
||||
|
||||
auto M = ratio[d];
|
||||
|
||||
int sP = split_grid->_processors[d];
|
||||
int fP = full_grid->_processors[d];
|
||||
|
||||
auto ldims = rdims; ldims[d] /= M; // Decrease local dims by same factor
|
||||
auto lsites= rsites/M; // Decreases rsites by M
|
||||
|
||||
int fvol = lsites;
|
||||
int chunk = (nvec*fvol)/sP; GRID_ASSERT(chunk*sP == nvec*fvol);
|
||||
|
||||
{
|
||||
// Loop over reordered data post A2A
|
||||
thread_for(c, chunk,{
|
||||
Coordinate coor(ndim);
|
||||
for(int m=0;m<M;m++){
|
||||
for(int s=0;s<sP;s++){
|
||||
|
||||
// addressing; use lexico
|
||||
int lex_r;
|
||||
uint64_t lex_c = c+chunk*m+chunk*M*s;
|
||||
uint64_t lex_fvol_vec = c+chunk*s;
|
||||
uint64_t lex_fvol = lex_fvol_vec%fvol;
|
||||
uint64_t lex_vec = lex_fvol_vec/fvol;
|
||||
|
||||
// which node sets an adder to the coordinate
|
||||
Lexicographic::CoorFromIndex(coor, lex_fvol, ldims);
|
||||
coor[d] += m*ldims[d];
|
||||
Lexicographic::IndexFromCoor(coor, lex_r, rdims);
|
||||
lex_r += lex_vec * rsites;
|
||||
|
||||
// LexicoFind coordinate & vector number within split lattice
|
||||
tmpdata[lex_c] = alldata[lex_r];
|
||||
}
|
||||
}
|
||||
});
|
||||
}
|
||||
|
||||
if ( split_grid->_processors[d] > 1 ) {
|
||||
split_grid->AllToAll(d,tmpdata,alldata);
|
||||
tmpdata=alldata;
|
||||
}
|
||||
full_grid ->AllToAll(d,tmpdata,alldata);
|
||||
rdims[d]/= M;
|
||||
rsites /= M;
|
||||
nvec *= M; // Increase nvec by subdivision factor
|
||||
}
|
||||
}
|
||||
|
||||
lsites = full_grid->lSites();
|
||||
for(int v=0;v<nvector;v++){
|
||||
thread_for(site, lsites,{
|
||||
scalardata[site] = alldata[v*lsites+site];
|
||||
});
|
||||
vectorizeFromLexOrdArray(scalardata,full[v]);
|
||||
std::cout << GridLogPerformance << "Grid_unsplit: " << sched.nvector << " x " << bytes/1.0e6
|
||||
<< " MB/rank total " << t_total/1.0e6 << " s : alloc " << t_alloc/1.0e6
|
||||
<< " pack " << t_pack/1.0e6
|
||||
<< " exchange " << t_comm/1.0e6 << " (" << offrank/1.0e6 << " MB off rank, "
|
||||
<< offrank/(t_comm+1.0e-9)/1.0e3 << " GB/s)"
|
||||
<< " unpack " << t_unpack/1.0e6 << std::endl;
|
||||
// Staging buffers are still live here, so this is the high-water point of the call
|
||||
if ( GridLogPerformance.isActive() ) {
|
||||
HostMemoryReport(full_grid,GridLogPerformance,"Grid_unsplit");
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
@@ -0,0 +1,227 @@
|
||||
/*************************************************************************************
|
||||
|
||||
Grid physics library, www.github.com/paboyle/Grid
|
||||
|
||||
Source file: ./lib/perfmon/HostMemory.h
|
||||
|
||||
Copyright (C) 2026
|
||||
|
||||
Author: Peter Boyle <paboyle@ph.ed.ac.uk>
|
||||
|
||||
This program is free software; you can redistribute it and/or modify
|
||||
it under the terms of the GNU General Public License as published by
|
||||
the Free Software Foundation; either version 2 of the License, or
|
||||
(at your option) any later version.
|
||||
|
||||
This program is distributed in the hope that it will be useful,
|
||||
but WITHOUT ANY WARRANTY; without even the implied warranty of
|
||||
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
|
||||
GNU General Public License for more details.
|
||||
|
||||
You should have received a copy of the GNU General Public License along
|
||||
with this program; if not, write to the Free Software Foundation, Inc.,
|
||||
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
|
||||
|
||||
See the full license in the file "LICENSE" in the top level distribution directory
|
||||
*************************************************************************************/
|
||||
/* END LEGAL */
|
||||
#pragma once
|
||||
|
||||
#include <sys/resource.h>
|
||||
#include <unistd.h>
|
||||
#include <cctype>
|
||||
#include <fstream>
|
||||
#ifdef __APPLE__
|
||||
#include <mach/mach.h>
|
||||
#endif
|
||||
|
||||
NAMESPACE_BEGIN(Grid);
|
||||
|
||||
/////////////////////////////////////////////////////////////////////////////////////////////
|
||||
// Host memory as the OOM killer sees it, plus the device allocator footprint.
|
||||
// Targets are Apple or Linux; on Apple only the RSS and device fields are filled.
|
||||
//
|
||||
// RSS : this process, now and its high-water mark (getrusage).
|
||||
// Node : MemAvailable and MemTotal from /proc/meminfo (Linux).
|
||||
// Cgroup : the nearest enclosing memory cgroup with a finite limit (the one the batch
|
||||
// system enforces), its usage now, its high-water mark and the limit (Linux,
|
||||
// v2 or v1 hierarchy). Cgroup usage includes page cache, tmpfs and kernel memory
|
||||
// charged to the job, none of which appear in any process RSS.
|
||||
// Device : MemoryManager Lattice footprint on the device and its free-block cache. Device
|
||||
// allocations outside the MemoryManager (comms buffers) are not included.
|
||||
//
|
||||
// All values in GB; -1 where the source does not exist on this platform or kernel.
|
||||
/////////////////////////////////////////////////////////////////////////////////////////////
|
||||
struct HostMemoryStatus
|
||||
{
|
||||
RealD RSS = -1;
|
||||
RealD RSSPeak = -1;
|
||||
RealD NodeAvailable = -1;
|
||||
RealD NodeTotal = -1;
|
||||
RealD CgroupCurrent = -1;
|
||||
RealD CgroupPeak = -1;
|
||||
RealD CgroupLimit = -1;
|
||||
RealD DeviceLattice = -1;
|
||||
RealD DeviceCache = -1;
|
||||
};
|
||||
|
||||
#ifndef __APPLE__ // Linux
|
||||
|
||||
// One number from a file; -1 if the file is absent or holds no number (e.g. "max")
|
||||
inline RealD HostMemoryReadBytes(const std::string &file)
|
||||
{
|
||||
std::ifstream f(file);
|
||||
if ( !f.good() ) {
|
||||
return -1;
|
||||
}
|
||||
std::string word;
|
||||
f >> word;
|
||||
if ( word.empty() || !isdigit(word[0]) ) {
|
||||
return -1;
|
||||
}
|
||||
return std::stod(word);
|
||||
}
|
||||
|
||||
// Value of a "Key: N kB" line in /proc/meminfo, in bytes; -1 if absent
|
||||
inline RealD HostMemoryMeminfo(const std::string &key)
|
||||
{
|
||||
std::ifstream f("/proc/meminfo");
|
||||
std::string name;
|
||||
RealD value;
|
||||
std::string unit;
|
||||
while ( f >> name >> value >> unit ) {
|
||||
if ( name == key + ":" ) {
|
||||
return value*1024.0;
|
||||
}
|
||||
}
|
||||
return -1;
|
||||
}
|
||||
|
||||
// Fill the cgroup fields from the nearest enclosing memory cgroup with a finite limit, or
|
||||
// from this process's own cgroup (limit left at -1) if no ancestor has one
|
||||
inline void HostMemoryCgroup(HostMemoryStatus &s)
|
||||
{
|
||||
std::ifstream f("/proc/self/cgroup");
|
||||
std::string line;
|
||||
std::string root;
|
||||
std::string path;
|
||||
std::string current;
|
||||
std::string peak;
|
||||
std::string limit;
|
||||
while ( std::getline(f,line) ) {
|
||||
size_t c1 = line.find(':');
|
||||
size_t c2 = line.find(':',c1+1);
|
||||
if ( c1 == std::string::npos || c2 == std::string::npos ) {
|
||||
continue;
|
||||
}
|
||||
std::string controllers = line.substr(c1+1,c2-c1-1);
|
||||
// v2 unified hierarchy: "0::/path"
|
||||
if ( controllers.empty() && root.empty() ) {
|
||||
root = "/sys/fs/cgroup";
|
||||
path = line.substr(c2+1);
|
||||
current = "memory.current";
|
||||
peak = "memory.peak";
|
||||
limit = "memory.max";
|
||||
}
|
||||
// v1 memory controller: "N:memory:/path", takes precedence
|
||||
if ( (","+controllers+",").find(",memory,") != std::string::npos ) {
|
||||
root = "/sys/fs/cgroup/memory";
|
||||
path = line.substr(c2+1);
|
||||
current = "memory.usage_in_bytes";
|
||||
peak = "memory.max_usage_in_bytes";
|
||||
limit = "memory.limit_in_bytes";
|
||||
break;
|
||||
}
|
||||
}
|
||||
if ( root.empty() ) {
|
||||
return;
|
||||
}
|
||||
|
||||
// v1 reports "no limit" as a number near 2^63
|
||||
const RealD unlimited = 1.0e18;
|
||||
std::string dir = path;
|
||||
while ( true ) {
|
||||
std::string base = root + dir + "/";
|
||||
RealD lim = HostMemoryReadBytes(base+limit);
|
||||
if ( lim > 0 && lim < unlimited ) {
|
||||
s.CgroupCurrent = HostMemoryReadBytes(base+current)/1.0e9;
|
||||
s.CgroupPeak = HostMemoryReadBytes(base+peak)/1.0e9;
|
||||
s.CgroupLimit = lim/1.0e9;
|
||||
return;
|
||||
}
|
||||
if ( dir.empty() || dir == "/" ) {
|
||||
break;
|
||||
}
|
||||
dir = dir.substr(0,dir.rfind('/'));
|
||||
}
|
||||
std::string base = root + path + "/";
|
||||
s.CgroupCurrent = HostMemoryReadBytes(base+current)/1.0e9;
|
||||
s.CgroupPeak = HostMemoryReadBytes(base+peak)/1.0e9;
|
||||
}
|
||||
|
||||
#endif
|
||||
|
||||
// This rank only; no communication
|
||||
inline HostMemoryStatus HostMemoryQuery(void)
|
||||
{
|
||||
HostMemoryStatus s;
|
||||
|
||||
struct rusage ru;
|
||||
getrusage(RUSAGE_SELF,&ru);
|
||||
#ifdef __APPLE__
|
||||
s.RSSPeak = ru.ru_maxrss/1.0e9; // bytes on macOS
|
||||
mach_task_basic_info_data_t info;
|
||||
mach_msg_type_number_t count = MACH_TASK_BASIC_INFO_COUNT;
|
||||
if ( task_info(mach_task_self(),MACH_TASK_BASIC_INFO,(task_info_t)&info,&count) == KERN_SUCCESS ) {
|
||||
s.RSS = info.resident_size/1.0e9;
|
||||
}
|
||||
#else // Linux
|
||||
s.RSSPeak = ru.ru_maxrss*1024.0/1.0e9; // kilobytes on Linux
|
||||
std::ifstream statm("/proc/self/statm");
|
||||
long pages = 0;
|
||||
long resident = 0;
|
||||
if ( statm >> pages >> resident ) {
|
||||
s.RSS = resident*(RealD)sysconf(_SC_PAGESIZE)/1.0e9;
|
||||
}
|
||||
RealD avail = HostMemoryMeminfo("MemAvailable");
|
||||
RealD total = HostMemoryMeminfo("MemTotal");
|
||||
if ( avail >= 0 ) {
|
||||
s.NodeAvailable = avail/1.0e9;
|
||||
}
|
||||
if ( total >= 0 ) {
|
||||
s.NodeTotal = total/1.0e9;
|
||||
}
|
||||
HostMemoryCgroup(s);
|
||||
#endif
|
||||
|
||||
s.DeviceLattice = MemoryManager::DeviceBytes/1.0e9;
|
||||
s.DeviceCache = MemoryManager::DeviceCacheBytes()/1.0e9;
|
||||
return s;
|
||||
}
|
||||
|
||||
/////////////////////////////////////////////////////////////////////////////////////////////
|
||||
// Collective over grid. One line on log: maxima over ranks, except node MemAvailable which
|
||||
// is the minimum over ranks (the tightest node).
|
||||
/////////////////////////////////////////////////////////////////////////////////////////////
|
||||
inline void HostMemoryReport(GridBase *grid,GridLogger &log,const std::string &label)
|
||||
{
|
||||
HostMemoryStatus s = HostMemoryQuery();
|
||||
RealD minus_available = -s.NodeAvailable;
|
||||
grid->GlobalMax(s.RSS);
|
||||
grid->GlobalMax(s.RSSPeak);
|
||||
grid->GlobalMax(minus_available);
|
||||
grid->GlobalMax(s.NodeTotal);
|
||||
grid->GlobalMax(s.CgroupCurrent);
|
||||
grid->GlobalMax(s.CgroupPeak);
|
||||
grid->GlobalMax(s.CgroupLimit);
|
||||
grid->GlobalMax(s.DeviceLattice);
|
||||
grid->GlobalMax(s.DeviceCache);
|
||||
std::cout << log << "HOSTMEM " << label
|
||||
<< " : rank RSS " << s.RSS << " peak " << s.RSSPeak
|
||||
<< " ; node available " << -minus_available << " of " << s.NodeTotal
|
||||
<< " ; cgroup " << s.CgroupCurrent << " peak " << s.CgroupPeak << " limit " << s.CgroupLimit
|
||||
<< " ; device lattice " << s.DeviceLattice << " cache " << s.DeviceCache
|
||||
<< " GB" << std::endl;
|
||||
}
|
||||
|
||||
NAMESPACE_END(Grid);
|
||||
@@ -70,6 +70,8 @@ public:
|
||||
GRID_ASSERT(U != nullptr);
|
||||
GRID_ASSERT(mpi_split.size() == Nd);
|
||||
|
||||
double t0 = usecond();
|
||||
|
||||
SplitOperator<FermionField> *split = new SplitOperator<FermionField>();
|
||||
|
||||
split->GaugeGrid = new GridCartesian(U->FullDimensions(),U->_simd_layout,mpi_split,*U);
|
||||
@@ -85,6 +87,7 @@ public:
|
||||
split->FermionGrid = split->GaugeGrid;
|
||||
split->FermionRBGrid = split->GaugeRBGrid;
|
||||
}
|
||||
std::cout << GridLogPerformance << "MakeSplitGrids: " << (usecond()-t0)/1.0e6 << " s" << std::endl;
|
||||
return split;
|
||||
}
|
||||
|
||||
|
||||
@@ -192,9 +192,14 @@ public:
|
||||
// Redistribute this operator's doubled gauge field onto clone's split grid. Collective.
|
||||
void SplitDoubledGaugeInto(WilsonFermion5D<Impl> &clone)
|
||||
{
|
||||
double t0 = usecond();
|
||||
DoubledGaugeField sUmu(clone.GaugeGrid());
|
||||
Grid_split(Umu,sUmu);
|
||||
double t1 = usecond();
|
||||
clone.ImportDoubledGauge(sUmu);
|
||||
double t2 = usecond();
|
||||
std::cout << GridLogPerformance << "SplitDoubledGaugeInto: Grid_split " << (t1-t0)/1.0e6
|
||||
<< " s import " << (t2-t1)/1.0e6 << " s" << std::endl;
|
||||
}
|
||||
|
||||
///////////////////////////////////////////////////////////////
|
||||
|
||||
@@ -56,14 +56,12 @@ int main (int argc, char ** argv)
|
||||
/////////////////////////////////////////////
|
||||
// Split into 1^4 mpi communicators
|
||||
/////////////////////////////////////////////
|
||||
for(int i=0;i<argc;i++){
|
||||
if(std::string(argv[i]) == "--split"){
|
||||
for(int k=0;k<mpi_layout.size();k++){
|
||||
std::stringstream ss;
|
||||
ss << argv[i+1+k];
|
||||
ss >> mpi_split[k];
|
||||
}
|
||||
break;
|
||||
if ( GridCmdOptionExists(argv,argv+argc,"--split") ) {
|
||||
std::vector<int> split;
|
||||
GridCmdOptionIntVector(GridCmdOptionPayload(argv,argv+argc,"--split"),split);
|
||||
GRID_ASSERT(split.size() == mpi_layout.size());
|
||||
for(int k=0;k<mpi_layout.size();k++){
|
||||
mpi_split[k] = split[k];
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
@@ -59,14 +59,12 @@ int main (int argc, char ** argv)
|
||||
// Split into 1^4 mpi communicators
|
||||
/////////////////////////////////////////////
|
||||
|
||||
for(int i=0;i<argc;i++){
|
||||
if(std::string(argv[i]) == "--split"){
|
||||
for(int k=0;k<mpi_layout.size();k++){
|
||||
std::stringstream ss;
|
||||
ss << argv[i+1+k];
|
||||
ss >> mpi_split[k];
|
||||
}
|
||||
break;
|
||||
if ( GridCmdOptionExists(argv,argv+argc,"--split") ) {
|
||||
std::vector<int> split;
|
||||
GridCmdOptionIntVector(GridCmdOptionPayload(argv,argv+argc,"--split"),split);
|
||||
GRID_ASSERT(split.size() == mpi_layout.size());
|
||||
for(int k=0;k<mpi_layout.size();k++){
|
||||
mpi_split[k] = split[k];
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
@@ -63,14 +63,12 @@ int main (int argc, char ** argv)
|
||||
// Split into 1^4 mpi communicators
|
||||
/////////////////////////////////////////////
|
||||
|
||||
for(int i=0;i<argc;i++){
|
||||
if(std::string(argv[i]) == "--split"){
|
||||
for(int k=0;k<mpi_layout.size();k++){
|
||||
std::stringstream ss;
|
||||
ss << argv[i+1+k];
|
||||
ss >> mpi_split[k];
|
||||
}
|
||||
break;
|
||||
if ( GridCmdOptionExists(argv,argv+argc,"--split") ) {
|
||||
std::vector<int> split;
|
||||
GridCmdOptionIntVector(GridCmdOptionPayload(argv,argv+argc,"--split"),split);
|
||||
GRID_ASSERT(split.size() == mpi_layout.size());
|
||||
for(int k=0;k<mpi_layout.size();k++){
|
||||
mpi_split[k] = split[k];
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
@@ -56,14 +56,12 @@ int main (int argc, char ** argv)
|
||||
// Split into 1^4 mpi communicators
|
||||
/////////////////////////////////////////////
|
||||
|
||||
for(int i=0;i<argc;i++){
|
||||
if(std::string(argv[i]) == "--split"){
|
||||
for(int k=0;k<mpi_layout.size();k++){
|
||||
std::stringstream ss;
|
||||
ss << argv[i+1+k];
|
||||
ss >> mpi_split[k];
|
||||
}
|
||||
break;
|
||||
if ( GridCmdOptionExists(argv,argv+argc,"--split") ) {
|
||||
std::vector<int> split;
|
||||
GridCmdOptionIntVector(GridCmdOptionPayload(argv,argv+argc,"--split"),split);
|
||||
GRID_ASSERT(split.size() == mpi_layout.size());
|
||||
for(int k=0;k<mpi_layout.size();k++){
|
||||
mpi_split[k] = split[k];
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
@@ -145,16 +145,19 @@ void CheckSplitBatched(const std::string &name,
|
||||
sol_split[i] = Zero();
|
||||
}
|
||||
|
||||
MixedPrecisionConjugateGradientBatched<FieldD,FieldF> mCG(TOLERANCE,10000,50,1000,grid_f,Linop_f,Linop_d);
|
||||
|
||||
std::cout << GridLogMessage << name << ": unsplit batched solve" << std::endl;
|
||||
mCG.BatchedSplit = Coordinate();
|
||||
mCG.BatchedSplitNode = false;
|
||||
mCG(src,sol_ref);
|
||||
|
||||
std::cout << GridLogMessage << name << ": split batched solve, partition layout " << layout << std::endl;
|
||||
mCG.BatchedSplit = layout;
|
||||
mCG(src,sol_split);
|
||||
{
|
||||
std::cout << GridLogMessage << name << ": unsplit batched solve" << std::endl;
|
||||
MixedPrecisionConjugateGradientBatched<FieldD,FieldF> mCG(TOLERANCE,10000,50,1000,grid_f,Linop_f,Linop_d,
|
||||
true,Coordinate(),false);
|
||||
mCG(src,sol_ref);
|
||||
}
|
||||
{
|
||||
std::cout << GridLogMessage << name << ": split batched solve, partition layout " << layout << std::endl;
|
||||
MixedPrecisionConjugateGradientBatched<FieldD,FieldF> mCG(TOLERANCE,10000,50,1000,grid_f,Linop_f,Linop_d,
|
||||
true,layout,false);
|
||||
GRID_ASSERT( (mCG.Partitions == 1) || (mCG.split != nullptr) );
|
||||
mCG(src,sol_split);
|
||||
}
|
||||
|
||||
FieldD Msol(src[0].Grid());
|
||||
Msol.Checkerboard() = cb;
|
||||
|
||||
@@ -93,6 +93,7 @@ void ReportMemory(GridBase *grid,const std::string &phase)
|
||||
<< " : host RSS " << rss << " GB, peak " << peak
|
||||
<< " GB; allocator cache host " << hostcache << " GB, device " << devcache
|
||||
<< " GB (max over ranks)" << std::endl;
|
||||
HostMemoryReport(grid,GridLogMessage,phase);
|
||||
}
|
||||
|
||||
typedef LatticeFermionD FieldD;
|
||||
@@ -212,25 +213,24 @@ int main (int argc, char ** argv)
|
||||
|
||||
ReportMemory(UGrid_d,"operators and sources ready");
|
||||
|
||||
MixedPrecisionConjugateGradientBatched<FieldD,FieldF> mCG(tol,10000,50,10000,FrbGrid_f,Linop_f,Linop_d);
|
||||
|
||||
Coordinate split = mCG.BatchedSplit;
|
||||
bool splitnode = mCG.BatchedSplitNode;
|
||||
|
||||
if ( unsplit ) {
|
||||
mCG.BatchedSplit = Coordinate();
|
||||
mCG.BatchedSplitNode = false;
|
||||
MixedPrecisionConjugateGradientBatched<FieldD,FieldF> mCG(tol,10000,50,10000,FrbGrid_f,Linop_f,Linop_d,
|
||||
true,Coordinate(),false);
|
||||
SolveAndReport("UNSPLIT",mCG,Linop_d,src,sol);
|
||||
ReportMemory(UGrid_d,"after unsplit solve");
|
||||
}
|
||||
|
||||
mCG.BatchedSplit = split;
|
||||
mCG.BatchedSplitNode = splitnode;
|
||||
// Repeated split solves expose allocations not released between calls
|
||||
for(int r=0;r<repeat;r++){
|
||||
SolveAndReport("SPLIT",mCG,Linop_d,src,sol);
|
||||
ReportMemory(UGrid_d,"after split solve "+std::to_string(r));
|
||||
if ( repeat > 0 ) {
|
||||
// Split layout from the command line; the split operator is cloned here, once
|
||||
MixedPrecisionConjugateGradientBatched<FieldD,FieldF> mCG(tol,10000,50,10000,FrbGrid_f,Linop_f,Linop_d);
|
||||
ReportMemory(UGrid_d,"after split solver construction");
|
||||
// Repeated split solves reuse the clone and expose allocations not released between calls
|
||||
for(int r=0;r<repeat;r++){
|
||||
SolveAndReport("SPLIT",mCG,Linop_d,src,sol);
|
||||
ReportMemory(UGrid_d,"after split solve "+std::to_string(r));
|
||||
}
|
||||
}
|
||||
ReportMemory(UGrid_d,"after split solver destruction");
|
||||
|
||||
Grid_finalize();
|
||||
}
|
||||
Reference in new issue
Block a user