Checking in working version of Lanczos.

.gitignore

@@ -92,7 +92,6 @@ build*/*
 #####################
 *.xcodeproj/*
 build.sh
-.vscode
 
 # Eigen source #
 ################
@@ -107,10 +106,6 @@ lib/fftw/*
 m4/lt*
 m4/libtool.m4
 
-# github pages #
-################
-gh-pages/
-
 # Buck files #
 ##############
 .buck*
@@ -121,5 +116,4 @@ make-bin-BUCK.sh
 # generated sources #
 #####################
 lib/qcd/spin/gamma-gen/*.h
-lib/qcd/spin/gamma-gen/*.cc
+lib/qcd/spin/gamma-gen/*.cc
-

.travis.yml

@@ -7,8 +7,64 @@ cache:
 matrix:
   include:
     - os:        osx
-      osx_image: xcode8.3
+      osx_image: xcode7.2
       compiler: clang
+    - compiler: gcc
+      addons:
+        apt:
+          sources:
+            - ubuntu-toolchain-r-test
+          packages:
+            - g++-4.9
+            - libmpfr-dev
+            - libgmp-dev
+            - libmpc-dev
+            - libopenmpi-dev
+            - openmpi-bin
+            - binutils-dev
+      env: VERSION=-4.9
+    - compiler: gcc
+      addons:
+        apt:
+          sources:
+            - ubuntu-toolchain-r-test
+          packages:
+            - g++-5
+            - libmpfr-dev
+            - libgmp-dev
+            - libmpc-dev
+            - libopenmpi-dev
+            - openmpi-bin
+            - binutils-dev
+      env: VERSION=-5
+    - compiler: clang
+      addons:
+        apt:
+          sources:
+            - ubuntu-toolchain-r-test
+          packages:
+            - g++-4.8
+            - libmpfr-dev
+            - libgmp-dev
+            - libmpc-dev
+            - libopenmpi-dev
+            - openmpi-bin
+            - binutils-dev
+      env: CLANG_LINK=http://llvm.org/releases/3.8.0/clang+llvm-3.8.0-x86_64-linux-gnu-ubuntu-14.04.tar.xz
+    - compiler: clang
+      addons:
+        apt:
+          sources:
+            - ubuntu-toolchain-r-test
+          packages:
+            - g++-4.8
+            - libmpfr-dev
+            - libgmp-dev
+            - libmpc-dev
+            - libopenmpi-dev
+            - openmpi-bin
+            - binutils-dev
+      env: CLANG_LINK=http://llvm.org/releases/3.7.0/clang+llvm-3.7.0-x86_64-linux-gnu-ubuntu-14.04.tar.xz
       
 before_install:
     - export GRIDDIR=`pwd`
@@ -17,15 +73,13 @@ before_install:
     - if [[ "$TRAVIS_OS_NAME" == "linux" ]] && [[ "$CC" == "clang" ]]; then export LD_LIBRARY_PATH="${GRIDDIR}/clang/lib:${LD_LIBRARY_PATH}"; fi
     - if [[ "$TRAVIS_OS_NAME" == "osx" ]]; then brew update; fi
     - if [[ "$TRAVIS_OS_NAME" == "osx" ]]; then brew install libmpc; fi
+    - if [[ "$TRAVIS_OS_NAME" == "osx" ]]; then brew install openmpi; fi
+    - if [[ "$TRAVIS_OS_NAME" == "osx" ]] && [[ "$CC" == "gcc" ]]; then brew install gcc5; fi
     
 install:
     - export CC=$CC$VERSION
     - export CXX=$CXX$VERSION
     - echo $PATH
-    - which autoconf
-    - autoconf  --version
-    - which automake
-    - automake  --version
     - which $CC
     - $CC  --version
     - which $CXX
@@ -38,9 +92,15 @@ script:
     - cd build
     - ../configure --enable-precision=single --enable-simd=SSE4 --enable-comms=none
     - make -j4 
-    - ./benchmarks/Benchmark_dwf --threads 1 --debug-signals
+    - ./benchmarks/Benchmark_dwf --threads 1
     - echo make clean
     - ../configure --enable-precision=double --enable-simd=SSE4 --enable-comms=none
     - make -j4
-    - ./benchmarks/Benchmark_dwf --threads 1 --debug-signals
+    - ./benchmarks/Benchmark_dwf --threads 1
-    - make check
+    - echo make clean
+    - if [[ "$TRAVIS_OS_NAME" == "linux" ]]; then export CXXFLAGS='-DMPI_UINT32_T=MPI_UNSIGNED -DMPI_UINT64_T=MPI_UNSIGNED_LONG'; fi
+    - ../configure --enable-precision=single --enable-simd=SSE4 --enable-comms=mpi-auto
+    - make -j4
+    - if [[ "$TRAVIS_OS_NAME" == "linux" ]]; then mpirun.openmpi -n 2 ./benchmarks/Benchmark_dwf --threads 1 --mpi 2.1.1.1; fi
+    - if [[ "$TRAVIS_OS_NAME" == "osx" ]]; then mpirun -n 2 ./benchmarks/Benchmark_dwf --threads 1 --mpi 2.1.1.1; fi
+

Makefile.am

@@ -3,15 +3,10 @@ SUBDIRS = lib benchmarks tests extras
 
 include $(top_srcdir)/doxygen.inc
 
-bin_SCRIPTS=grid-config
+tests: all
+	$(MAKE) -C tests tests
 
-
+.PHONY: tests doxygen-run doxygen-doc $(DX_PS_GOAL) $(DX_PDF_GOAL)
-.PHONY: bench check tests doxygen-run doxygen-doc $(DX_PS_GOAL) $(DX_PDF_GOAL)
-
-tests-local: all
-bench-local: all
-check-local: all
 
 AM_CXXFLAGS += -I$(top_builddir)/include
-
 ACLOCAL_AMFLAGS = -I m4

README.md

@@ -1,13 +1,41 @@
-# Grid [![Teamcity status](http://ci.cliath.ph.ed.ac.uk/app/rest/builds/aggregated/strob:(buildType:(affectedProject(id:Grid)),branch:name:develop)/statusIcon.svg)](http://ci.cliath.ph.ed.ac.uk/project.html?projectId=Grid&tab=projectOverview) [![Travis status](https://travis-ci.org/paboyle/Grid.svg?branch=develop)](https://travis-ci.org/paboyle/Grid)
+# Grid
+<table>
+<tr>
+    <td>Last stable release</td>
+    <td><a href="https://travis-ci.org/paboyle/Grid">
+    <img src="https://travis-ci.org/paboyle/Grid.svg?branch=master"></a>
+    </td>
+</tr>
+<tr>
+    <td>Development branch</td>
+    <td><a href="https://travis-ci.org/paboyle/Grid">
+    <img src="https://travis-ci.org/paboyle/Grid.svg?branch=develop"></a>
+    </td>
+</tr>
+</table>
 
 **Data parallel C++ mathematical object library.**
 
 License: GPL v2.
 
-Last update June 2017.
+Last update Nov 2016.
 
 _Please do not send pull requests to the `master` branch which is reserved for releases._
 
+### Bug report
+
+_To help us tracking and solving more efficiently issues with Grid, please report problems using the issue system of GitHub rather than sending emails to Grid developers._
+
+When you file an issue, please go though the following checklist:
+
+1. Check that the code is pointing to the `HEAD` of `develop` or any commit in `master` which is tagged with a version number. 
+2. Give a description of the target platform (CPU, network, compiler). Please give the full CPU part description, using for example `cat /proc/cpuinfo | grep 'model name' | uniq` (Linux) or `sysctl machdep.cpu.brand_string` (macOS) and the full output the `--version` option of your compiler.
+3. Give the exact `configure` command used.
+4. Attach `config.log`.
+5. Attach `config.summary`.
+6. Attach the output of `make V=1`.
+7. Describe the issue and any previous attempt to solve it. If relevant, show how to reproduce the issue using a minimal working example.
+
 
 
 ### Description
@@ -30,68 +58,13 @@ optimally use MPI, OpenMP and SIMD parallelism under the hood. This is a signifi
 for most programmers.
 
 The layout transformations are parametrised by the SIMD vector length. This adapts according to the architecture.
-Presently SSE4, ARM NEON (128 bits) AVX, AVX2, QPX (256 bits), IMCI and AVX512 (512 bits) targets are supported.
+Presently SSE4 (128 bit) AVX, AVX2, QPX (256 bit), IMCI, and AVX512 (512 bit) targets are supported (ARM NEON on the way).
 
-These are presented as `vRealF`, `vRealD`, `vComplexF`, and `vComplexD` internal vector data types. 
+These are presented as `vRealF`, `vRealD`, `vComplexF`, and `vComplexD` internal vector data types. These may be useful in themselves for other programmers.
 The corresponding scalar types are named `RealF`, `RealD`, `ComplexF` and `ComplexD`.
 
 MPI, OpenMP, and SIMD parallelism are present in the library.
-Please see [this paper](https://arxiv.org/abs/1512.03487) for more detail.
+Please see https://arxiv.org/abs/1512.03487 for more detail.
-
-
-### Compilers
-
-Intel ICPC v16.0.3 and later
-
-Clang v3.5 and later (need 3.8 and later for OpenMP)
-
-GCC   v4.9.x (recommended)
-
-GCC   v6.3 and later
-
-### Important: 
-
-Some versions of GCC appear to have a bug under high optimisation (-O2, -O3).
-
-The safety of these compiler versions cannot be guaranteed at this time. Follow Issue 100 for details and updates.
-
-GCC   v5.x
-
-GCC   v6.1, v6.2
-
-### Bug report
-
-_To help us tracking and solving more efficiently issues with Grid, please report problems using the issue system of GitHub rather than sending emails to Grid developers._
-
-When you file an issue, please go though the following checklist:
-
-1. Check that the code is pointing to the `HEAD` of `develop` or any commit in `master` which is tagged with a version number. 
-2. Give a description of the target platform (CPU, network, compiler). Please give the full CPU part description, using for example `cat /proc/cpuinfo | grep 'model name' | uniq` (Linux) or `sysctl machdep.cpu.brand_string` (macOS) and the full output the `--version` option of your compiler.
-3. Give the exact `configure` command used.
-4. Attach `config.log`.
-5. Attach `grid.config.summary`.
-6. Attach the output of `make V=1`.
-7. Describe the issue and any previous attempt to solve it. If relevant, show how to reproduce the issue using a minimal working example.
-
-### Required libraries
-Grid requires:
-
-[GMP](https://gmplib.org/), 
-
-[MPFR](http://www.mpfr.org/) 
-
-Bootstrapping grid downloads and uses for internal dense matrix (non-QCD operations) the Eigen library.
-
-Grid optionally uses:
-
-[HDF5](https://support.hdfgroup.org/HDF5/)  
-
-[LIME](http://usqcd-software.github.io/c-lime/) for ILDG and SciDAC file format support. 
-
-[FFTW](http://www.fftw.org) either generic version or via the Intel MKL library.
-
-LAPACK either generic version or Intel MKL library.
-
 
 ### Quick start
 First, start by cloning the repository:
@@ -122,10 +95,10 @@ install Grid. Other options are detailed in the next section, you can also use `
 `CXX`, `CXXFLAGS`, `LDFLAGS`, ... environment variables can be modified to
 customise the build.
 
-Finally, you can build, check, and install Grid:
+Finally, you can build and install Grid:
 
 ``` bash
-make; make check; make install
+make; make install
 ```
 
 To minimise the build time, only the tests at the root of the `tests` directory are built by default. If you want to build tests in the sub-directory `<subdir>` you can execute:
@@ -148,7 +121,7 @@ If you want to build all the tests at once just use `make tests`.
 - `--enable-gen-simd-width=<size>`: select the size (in bytes) of the generic SIMD vector type (default: 32 bytes).
 - `--enable-precision={single|double}`: set the default precision (default: `double`).
 - `--enable-precision=<comm>`: Use `<comm>` for message passing (default: `none`). A list of possible SIMD targets is detailed in a section below.
-- `--enable-rng={sitmo|ranlux48|mt19937}`: choose the RNG (default: `sitmo `).
+- `--enable-rng={ranlux48|mt19937}`: choose the RNG (default: `ranlux48 `).
 - `--disable-timers`: disable system dependent high-resolution timers.
 - `--enable-chroma`: enable Chroma regression tests.
 - `--enable-doxygen-doc`: enable the Doxygen documentation generation (build with `make doxygen-doc`)
@@ -162,6 +135,7 @@ The following options can be use with the `--enable-comms=` option to target dif
 | `none`         | no communications                                             |
 | `mpi[-auto]`   | MPI communications                                            |
 | `mpi3[-auto]`  | MPI communications using MPI 3 shared memory                  |
+| `mpi3l[-auto]` | MPI communications using MPI 3 shared memory and leader model |
 | `shmem `       | Cray SHMEM communications                                     |
 
 For the MPI interfaces the optional `-auto` suffix instructs the `configure` scripts to determine all the necessary compilation and linking flags. This is done by extracting the informations from the MPI wrapper specified in the environment variable `MPICXX` (if not specified `configure` will scan though a list of default names). The `-auto` suffix is not supported by the Cray environment wrapper scripts. Use the standard versions instead.  
@@ -179,13 +153,13 @@ The following options can be use with the `--enable-simd=` option to target diff
 | `AVXFMA4`   | AVX (256 bit) + FMA4                   |
 | `AVX2`      | AVX 2 (256 bit)                        |
 | `AVX512`    | AVX 512 bit                            |
-| `NEONv8`    | [ARM NEON](http://infocenter.arm.com/help/index.jsp?topic=/com.arm.doc.den0024a/ch07s03.html) (128 bit)                     |
+| `QPX`       | QPX (256 bit)                          |
-| `QPX`       | IBM QPX (256 bit)                      |
 
 Alternatively, some CPU codenames can be directly used:
 
 | `<code>`    | Description                            |
 | ----------- | -------------------------------------- |
+| `KNC`       | [Intel Xeon Phi codename Knights Corner](http://ark.intel.com/products/codename/57721/Knights-Corner) |
 | `KNL`       | [Intel Xeon Phi codename Knights Landing](http://ark.intel.com/products/codename/48999/Knights-Landing) |
 | `BGQ`       | Blue Gene/Q                            |
 
@@ -202,205 +176,21 @@ The following configuration is recommended for the Intel Knights Landing platfor
 ``` bash
 ../configure --enable-precision=double\
              --enable-simd=KNL        \
-             --enable-comms=mpi-auto  \
+             --enable-comms=mpi-auto \
+             --with-gmp=<path>        \
+             --with-mpfr=<path>       \
              --enable-mkl             \
              CXX=icpc MPICXX=mpiicpc
 ```
-The MKL flag enables use of BLAS and FFTW from the Intel Math Kernels Library.
 
-If you are working on a Cray machine that does not use the `mpiicpc` wrapper, please use:
+where `<path>` is the UNIX prefix where GMP and MPFR are installed. If you are working on a Cray machine that does not use the `mpiicpc` wrapper, please use:
 
 ``` bash
 ../configure --enable-precision=double\
              --enable-simd=KNL        \
              --enable-comms=mpi       \
+             --with-gmp=<path>        \
+             --with-mpfr=<path>       \
              --enable-mkl             \
              CXX=CC CC=cc
-```
+```
-
-If gmp and mpfr are NOT in standard places (/usr/) these flags may be needed:
-``` bash
-               --with-gmp=<path>        \
-               --with-mpfr=<path>       \
-```
-where `<path>` is the UNIX prefix where GMP and MPFR are installed. 
-
-Knight's Landing with Intel Omnipath adapters with two adapters per node 
-presently performs better with use of more than one rank per node, using shared memory 
-for interior communication. This is the mpi3 communications implementation. 
-We recommend four ranks per node for best performance, but optimum is local volume dependent.
-
-``` bash
-../configure --enable-precision=double\
-             --enable-simd=KNL        \
-             --enable-comms=mpi3-auto \
-             --enable-mkl             \
-             CC=icpc MPICXX=mpiicpc 
-```
-
-### Build setup for Intel Haswell Xeon platform
-
-The following configuration is recommended for the Intel Haswell platform:
-
-``` bash
-../configure --enable-precision=double\
-             --enable-simd=AVX2       \
-             --enable-comms=mpi3-auto \
-             --enable-mkl             \
-             CXX=icpc MPICXX=mpiicpc
-```
-The MKL flag enables use of BLAS and FFTW from the Intel Math Kernels Library.
-
-If gmp and mpfr are NOT in standard places (/usr/) these flags may be needed:
-``` bash
-               --with-gmp=<path>        \
-               --with-mpfr=<path>       \
-```
-where `<path>` is the UNIX prefix where GMP and MPFR are installed. 
-
-If you are working on a Cray machine that does not use the `mpiicpc` wrapper, please use:
-
-``` bash
-../configure --enable-precision=double\
-             --enable-simd=AVX2       \
-             --enable-comms=mpi3      \
-             --enable-mkl             \
-             CXX=CC CC=cc
-```
-Since Dual socket nodes are commonplace, we recommend MPI-3 as the default with the use of 
-one rank per socket. If using the Intel MPI library, threads should be pinned to NUMA domains using
-```
-        export I_MPI_PIN=1
-```
-This is the default.
-
-### Build setup for Intel Skylake Xeon platform
-
-The following configuration is recommended for the Intel Skylake platform:
-
-``` bash
-../configure --enable-precision=double\
-             --enable-simd=AVX512     \
-             --enable-comms=mpi3      \
-             --enable-mkl             \
-             CXX=mpiicpc
-```
-The MKL flag enables use of BLAS and FFTW from the Intel Math Kernels Library.
-
-If gmp and mpfr are NOT in standard places (/usr/) these flags may be needed:
-``` bash
-               --with-gmp=<path>        \
-               --with-mpfr=<path>       \
-```
-where `<path>` is the UNIX prefix where GMP and MPFR are installed. 
-
-If you are working on a Cray machine that does not use the `mpiicpc` wrapper, please use:
-
-``` bash
-../configure --enable-precision=double\
-             --enable-simd=AVX512     \
-             --enable-comms=mpi3      \
-             --enable-mkl             \
-             CXX=CC CC=cc
-```
-Since Dual socket nodes are commonplace, we recommend MPI-3 as the default with the use of 
-one rank per socket. If using the Intel MPI library, threads should be pinned to NUMA domains using
-``` 
-        export I_MPI_PIN=1
-```
-This is the default. 
-
-#### Expected Skylake Gold 6148 dual socket (single prec, single node 20+20 cores) performance using NUMA MPI mapping): 
-
-mpirun -n 2 benchmarks/Benchmark_dwf --grid 16.16.16.16 --mpi 2.1.1.1 --cacheblocking 2.2.2.2 --dslash-asm --shm 1024 --threads 18 
-
-TBA
-
-
-### Build setup for AMD EPYC / RYZEN
-
-The AMD EPYC is a multichip module comprising 32 cores spread over four distinct chips each with 8 cores.
-So, even with a single socket node there is a quad-chip module. Dual socket nodes with 64 cores total
-are common. Each chip within the module exposes a separate NUMA domain.
-There are four NUMA domains per socket and we recommend one MPI rank per NUMA domain.
-MPI-3 is recommended with the use of four ranks per socket,
-and 8 threads per rank. 
-
-The following configuration is recommended for the AMD EPYC platform.
-
-``` bash
-../configure --enable-precision=double\
-             --enable-simd=AVX2       \
-             --enable-comms=mpi3 \
-             CXX=mpicxx 
-```
-
-If gmp and mpfr are NOT in standard places (/usr/) these flags may be needed:
-``` bash
-               --with-gmp=<path>        \
-               --with-mpfr=<path>       \
-```
-where `<path>` is the UNIX prefix where GMP and MPFR are installed. 
-
-Using MPICH and g++ v4.9.2, best performance can be obtained using explicit GOMP_CPU_AFFINITY flags for each MPI rank.
-This can be done by invoking MPI on a wrapper script omp_bind.sh to handle this. 
-
-It is recommended to run 8 MPI ranks on a single dual socket AMD EPYC, with 8 threads per rank using MPI3 and
-shared memory to communicate within this node:
-
-mpirun -np 8 ./omp_bind.sh ./Benchmark_dwf --mpi 2.2.2.1 --dslash-unroll --threads 8 --grid 16.16.16.16 --cacheblocking 4.4.4.4 
-
-Where omp_bind.sh does the following:
-```
-#!/bin/bash
-
-numanode=` expr $PMI_RANK % 8 `
-basecore=`expr $numanode \* 16`
-core0=`expr $basecore + 0 `
-core1=`expr $basecore + 2 `
-core2=`expr $basecore + 4 `
-core3=`expr $basecore + 6 `
-core4=`expr $basecore + 8 `
-core5=`expr $basecore + 10 `
-core6=`expr $basecore + 12 `
-core7=`expr $basecore + 14 `
-
-export GOMP_CPU_AFFINITY="$core0 $core1 $core2 $core3 $core4 $core5 $core6 $core7"
-echo GOMP_CUP_AFFINITY $GOMP_CPU_AFFINITY
-
-$@
-```
-
-Performance:
-
-#### Expected AMD EPYC 7601 dual socket (single prec, single node 32+32 cores) performance using NUMA MPI mapping): 
-
-mpirun  -np 8 ./omp_bind.sh ./Benchmark_dwf --threads 8 --mpi 2.2.2.1 --dslash-unroll --grid 16.16.16.16 --cacheblocking 4.4.4.4
-
-TBA
-
-### Build setup for BlueGene/Q
-
-To be written...
-
-### Build setup for ARM Neon
-
-To be written...
-
-### Build setup for laptops, other compilers, non-cluster builds
-
-Many versions of g++ and clang++ work with Grid, and involve merely replacing CXX (and MPICXX),
-and omit the enable-mkl flag. 
-
-Single node builds are enabled with 
-```
-            --enable-comms=none
-```
-
-FFTW support that is not in the default search path may then enabled with
-```
-    --with-fftw=<installpath>
-```
-
-BLAS will not be compiled in by default, and Lanczos will default to Eigen diagonalisation.
-

TODO

@@ -1,35 +1,6 @@
 TODO:
 ---------------
 
-Large item work list:
-
-1)- BG/Q port and check ; Andrew says ok.
-2)- Christoph's local basis expansion Lanczos
---
-3a)- RNG I/O in ILDG/SciDAC (minor)
-3b)- Precision conversion and sort out localConvert      <-- partial/easy
-3c)- Consistent linear solver flop count/rate -- PARTIAL, time but no flop/s yet
-4)- Physical propagator interface
-5)- Conserved currents
-6)- Multigrid Wilson and DWF, compare to other Multigrid implementations
-7)- HDCR resume
-
-Recent DONE 
--- MultiRHS with spread out extra dim -- Go through filesystem with SciDAC I/O ; <-- DONE ; bmark cori
--- Lanczos Remove DenseVector, DenseMatrix; Use Eigen instead. <-- DONE
--- GaugeFix into central location                      <-- DONE
--- Scidac and Ildg metadata handling                   <-- DONE
--- Binary I/O MPI2 IO                                  <-- DONE
--- Binary I/O speed up & x-strips                      <-- DONE
--- Cut down the exterior overhead                      <-- DONE
--- Interior legs from SHM comms                        <-- DONE
--- Half-precision comms                                <-- DONE
--- Merge high precision reduction into develop         <-- DONE
--- BlockCG, BCGrQ                                      <-- DONE
--- multiRHS DWF; benchmark on Cori/BNL for comms elimination <-- DONE
-   -- slice* linalg routines for multiRHS, BlockCG    
-
------
 * Forces; the UdSdU  term in gauge force term is half of what I think it should
   be. This is a consequence of taking ONLY the first term in:
 
@@ -50,8 +21,16 @@ Recent DONE
   This means we must double the force in the Test_xxx_force routines, and is the origin of the factor of two.
   This 2x is applied by hand in the fermion routines and in the Test_rect_force routine.
 
+
+Policies:
+
+* Link smearing/boundary conds; Policy class based implementation ; framework more in place
+
 * Support different boundary conditions (finite temp, chem. potential ... )
 
+* Support different fermion representations? 
+  - contained entirely within the integrator presently
+
 - Sign of force term.
 
 - Reversibility test.
@@ -62,6 +41,11 @@ Recent DONE
 
 - Audit oIndex usage for cb behaviour
 
+- Rectangle gauge actions.
+  Iwasaki,
+  Symanzik,
+  ... etc...
+
 - Prepare multigrid for HMC. - Alternate setup schemes.
 
 - Support for ILDG --- ugly, not done
@@ -71,11 +55,9 @@ Recent DONE
 - FFTnD ?
 
 - Gparity; hand opt use template specialisation elegance to enable the optimised paths ?
-
 - Gparity force term; Gparity (R)HMC.
-
+- Random number state save restore
 - Mobius implementation clean up to rmove #if 0 stale code sequences
-
 - CG -- profile carefully, kernel fusion, whole CG performance measurements.
 
 ================================================================
@@ -108,7 +90,6 @@ Insert/Extract
 Not sure of status of this -- reverify. Things are working nicely now though.
 
 * Make the Tensor types and Complex etc... play more nicely.
-
   - TensorRemove is a hack, come up with a long term rationalised approach to Complex vs. Scalar<Scalar<Scalar<Complex > > >
     QDP forces use of "toDouble" to get back to non tensor scalar. This role is presently taken TensorRemove, but I
     want to introduce a syntax that does not require this.
@@ -131,8 +112,6 @@ Not sure of status of this -- reverify. Things are working nicely now though.
 RECENT
 ---------------
 
-  - Support different fermion representations? -- DONE
-  - contained entirely within the integrator presently
   - Clean up HMC                                                             -- DONE
   - LorentzScalar<GaugeField> gets Gauge link type (cleaner).                -- DONE
   - Simplified the integrators a bit.                                        -- DONE
@@ -144,26 +123,6 @@ RECENT
   - Parallel io improvements                                  -- DONE
   - Plaquette and link trace checks into nersc reader from the Grid_nersc_io.cc test. -- DONE
 
-
-DONE:
-- MultiArray -- MultiRHS done
-- ConjugateGradientMultiShift -- DONE
-- MCR                         -- DONE
-- Remez -- Mike or Boost?     -- DONE
-- Proto (ET)                  -- DONE
-- uBlas                       -- DONE ; Eigen
-- Potentially Useful Boost libraries -- DONE ; Eigen
-- Aligned allocator; memory pool -- DONE
-- Multiprecision              -- DONE
-- Serialization               -- DONE
-- Regex -- Not needed
-- Tokenize -- Why?
-
-- Random number state save restore -- DONE
-- Rectangle gauge actions. -- DONE
-  Iwasaki,
-  Symanzik,
-  ... etc...
 Done: Cayley, Partial , ContFrac force terms.
 
 DONE
@@ -248,7 +207,6 @@ Done
 FUNCTIONALITY: it pleases me to keep track of things I have done (keeps me arguably sane)
 ======================================================================================================
 
-* Link smearing/boundary conds; Policy class based implementation ; framework more in place -- DONE
 * Command line args for geometry, simd, etc. layout. Is it necessary to have -- DONE
   user pass these? Is this a QCD specific?
 

VERSION

@@ -1,5 +1,6 @@
-Version : 0.7.0
+Version : 0.6.0
 
-- Clang 3.5 and above, ICPC v16 and above, GCC 6.3 and above recommended
+- AVX512, AVX2, AVX, SSE good
-- MPI and MPI3 comms optimisations for KNL and OPA finished
+- Clang 3.5 and above, ICPC v16 and above, GCC 4.9 and above
-- Half precision comms
+- MPI and MPI3
+- HiRep, Smearing, Generic gauge group

benchmarks/Benchmark_ITT.cc

@@ -1,800 +0,0 @@
-    /*************************************************************************************
-
-    Grid physics library, www.github.com/paboyle/Grid 
-
-    Source file: ./benchmarks/Benchmark_memory_bandwidth.cc
-
-    Copyright (C) 2015
-
-Author: Peter Boyle <paboyle@ph.ed.ac.uk>
-Author: paboyle <paboyle@ph.ed.ac.uk>
-
-    This program is free software; you can redistribute it and/or modify
-    it under the terms of the GNU General Public License as published by
-    the Free Software Foundation; either version 2 of the License, or
-    (at your option) any later version.
-
-    This program is distributed in the hope that it will be useful,
-    but WITHOUT ANY WARRANTY; without even the implied warranty of
-    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-    GNU General Public License for more details.
-
-    You should have received a copy of the GNU General Public License along
-    with this program; if not, write to the Free Software Foundation, Inc.,
-    51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
-
-    See the full license in the file "LICENSE" in the top level distribution directory
-    *************************************************************************************/
-    /*  END LEGAL */
-#include <Grid/Grid.h>
-
-using namespace std;
-using namespace Grid;
-using namespace Grid::QCD;
-
-typedef WilsonFermion5D<DomainWallVec5dImplR> WilsonFermion5DR;
-typedef WilsonFermion5D<DomainWallVec5dImplF> WilsonFermion5DF;
-typedef WilsonFermion5D<DomainWallVec5dImplD> WilsonFermion5DD;
-
-
-std::vector<int> L_list;
-std::vector<int> Ls_list;
-std::vector<double> mflop_list;
-
-double mflop_ref;
-double mflop_ref_err;
-
-int NN_global;
-
-struct time_statistics{
-  double mean;
-  double err;
-  double min;
-  double max;
-
-  void statistics(std::vector<double> v){
-      double sum = std::accumulate(v.begin(), v.end(), 0.0);
-      mean = sum / v.size();
-
-      std::vector<double> diff(v.size());
-      std::transform(v.begin(), v.end(), diff.begin(), [=](double x) { return x - mean; });
-      double sq_sum = std::inner_product(diff.begin(), diff.end(), diff.begin(), 0.0);
-      err = std::sqrt(sq_sum / (v.size()*(v.size() - 1)));
-
-      auto result = std::minmax_element(v.begin(), v.end());
-      min = *result.first;
-      max = *result.second;
-}
-};
-
-void comms_header(){
-  std::cout <<GridLogMessage << " L  "<<"\t"<<" Ls  "<<"\t"
-            <<std::setw(11)<<"bytes"<<"MB/s uni (err/min/max)"<<"\t\t"<<"MB/s bidi (err/min/max)"<<std::endl;
-};
-
-Gamma::Algebra Gmu [] = {
-  Gamma::Algebra::GammaX,
-  Gamma::Algebra::GammaY,
-  Gamma::Algebra::GammaZ,
-  Gamma::Algebra::GammaT
-};
-struct controls {
-  int Opt;
-  int CommsOverlap;
-  Grid::CartesianCommunicator::CommunicatorPolicy_t CommsAsynch;
-  //  int HugePages;
-};
-
-class Benchmark {
-public:
-  static void Decomposition (void ) {
-
-    int threads = GridThread::GetThreads();
-    std::cout<<GridLogMessage << "=================================================================================="<<std::endl;
-    std::cout<<GridLogMessage << "= Grid is setup to use "<<threads<<" threads"<<std::endl;
-    std::cout<<GridLogMessage << "=================================================================================="<<std::endl;
-    std::cout<<GridLogMessage<<"Grid Default Decomposition patterns\n";
-    std::cout<<GridLogMessage<<"\tOpenMP threads : "<<GridThread::GetThreads()<<std::endl;
-    std::cout<<GridLogMessage<<"\tMPI tasks      : "<<GridCmdVectorIntToString(GridDefaultMpi())<<std::endl;
-    std::cout<<GridLogMessage<<"\tvReal          : "<<sizeof(vReal )*8    <<"bits ; " <<GridCmdVectorIntToString(GridDefaultSimd(4,vReal::Nsimd()))<<std::endl;
-    std::cout<<GridLogMessage<<"\tvRealF         : "<<sizeof(vRealF)*8    <<"bits ; " <<GridCmdVectorIntToString(GridDefaultSimd(4,vRealF::Nsimd()))<<std::endl;
-    std::cout<<GridLogMessage<<"\tvRealD         : "<<sizeof(vRealD)*8    <<"bits ; " <<GridCmdVectorIntToString(GridDefaultSimd(4,vRealD::Nsimd()))<<std::endl;
-    std::cout<<GridLogMessage<<"\tvComplex       : "<<sizeof(vComplex )*8 <<"bits ; " <<GridCmdVectorIntToString(GridDefaultSimd(4,vComplex::Nsimd()))<<std::endl;
-    std::cout<<GridLogMessage<<"\tvComplexF      : "<<sizeof(vComplexF)*8 <<"bits ; " <<GridCmdVectorIntToString(GridDefaultSimd(4,vComplexF::Nsimd()))<<std::endl;
-    std::cout<<GridLogMessage<<"\tvComplexD      : "<<sizeof(vComplexD)*8 <<"bits ; " <<GridCmdVectorIntToString(GridDefaultSimd(4,vComplexD::Nsimd()))<<std::endl;
-    std::cout<<GridLogMessage << "=================================================================================="<<std::endl;
-
-  }
-
-  static void Comms(void)
-  {
-    int Nloop=200;
-    int nmu=0;
-    int maxlat=32;
-
-    std::vector<int> simd_layout = GridDefaultSimd(Nd,vComplexD::Nsimd());
-    std::vector<int> mpi_layout  = GridDefaultMpi();
-
-    for(int mu=0;mu<Nd;mu++) if (mpi_layout[mu]>1) nmu++;
-
-    std::vector<double> t_time(Nloop);
-    time_statistics timestat;
-
-    std::cout<<GridLogMessage << "===================================================================================================="<<std::endl;
-    std::cout<<GridLogMessage << "= Benchmarking threaded STENCIL halo exchange in "<<nmu<<" dimensions"<<std::endl;
-    std::cout<<GridLogMessage << "===================================================================================================="<<std::endl;
-    comms_header();
-
-    for(int lat=4;lat<=maxlat;lat+=4){
-      for(int Ls=8;Ls<=8;Ls*=2){
-
-	std::vector<int> latt_size  ({lat*mpi_layout[0],
-	      lat*mpi_layout[1],
-	      lat*mpi_layout[2],
-	      lat*mpi_layout[3]});
-
-	GridCartesian     Grid(latt_size,simd_layout,mpi_layout);
-	RealD Nrank = Grid._Nprocessors;
-	RealD Nnode = Grid.NodeCount();
-	RealD ppn = Nrank/Nnode;
-
-	std::vector<HalfSpinColourVectorD *> xbuf(8);
-	std::vector<HalfSpinColourVectorD *> rbuf(8);
-	Grid.ShmBufferFreeAll();
-	for(int d=0;d<8;d++){
-	  xbuf[d] = (HalfSpinColourVectorD *)Grid.ShmBufferMalloc(lat*lat*lat*Ls*sizeof(HalfSpinColourVectorD));
-	  rbuf[d] = (HalfSpinColourVectorD *)Grid.ShmBufferMalloc(lat*lat*lat*Ls*sizeof(HalfSpinColourVectorD));
-	  bzero((void *)xbuf[d],lat*lat*lat*Ls*sizeof(HalfSpinColourVectorD));
-	  bzero((void *)rbuf[d],lat*lat*lat*Ls*sizeof(HalfSpinColourVectorD));
-	}
-
-	int bytes=lat*lat*lat*Ls*sizeof(HalfSpinColourVectorD);
-	int ncomm;
-	double dbytes;
-	std::vector<double> times(Nloop);
-	for(int i=0;i<Nloop;i++){
-
-	  double start=usecond();
-
-	  dbytes=0;
-	  ncomm=0;
-
-	  parallel_for(int dir=0;dir<8;dir++){
-
-	    double tbytes;
-	    int mu =dir % 4;
-
-	    if (mpi_layout[mu]>1 ) {
-	        
-	      int xmit_to_rank;
-	      int recv_from_rank;
-	      if ( dir == mu ) { 
-		int comm_proc=1;
-		Grid.ShiftedRanks(mu,comm_proc,xmit_to_rank,recv_from_rank);
-	      } else { 
-		int comm_proc = mpi_layout[mu]-1;
-		Grid.ShiftedRanks(mu,comm_proc,xmit_to_rank,recv_from_rank);
-	      }
-	      tbytes= Grid.StencilSendToRecvFrom((void *)&xbuf[dir][0], xmit_to_rank,
-						 (void *)&rbuf[dir][0], recv_from_rank,
-						 bytes,dir);
-	  
-#ifdef GRID_OMP
-#pragma omp atomic
-#endif
-	      ncomm++;
-
-#ifdef GRID_OMP
-#pragma omp atomic
-#endif
-	      dbytes+=tbytes;
-	    }
-	  }
-	  Grid.Barrier();
-	  double stop=usecond();
-	  t_time[i] = stop-start; // microseconds
-	}
-
-	timestat.statistics(t_time);
-	//	for(int i=0;i<t_time.size();i++){
-	//	  std::cout << i<<" "<<t_time[i]<<std::endl;
-	//	}
-
-	dbytes=dbytes*ppn;
-	double xbytes    = dbytes*0.5;
-	double rbytes    = dbytes*0.5;
-	double bidibytes = dbytes;
-
-	std::cout<<GridLogMessage << std::setw(4) << lat<<"\t"<<Ls<<"\t"
-		 <<std::setw(11) << bytes<< std::fixed << std::setprecision(1) << std::setw(7)
-		 <<std::right<< xbytes/timestat.mean<<"  "<< xbytes*timestat.err/(timestat.mean*timestat.mean)<< " "
-		 <<xbytes/timestat.max <<" "<< xbytes/timestat.min  
-		 << "\t\t"<<std::setw(7)<< bidibytes/timestat.mean<< "  " << bidibytes*timestat.err/(timestat.mean*timestat.mean) << " "
-		 << bidibytes/timestat.max << " " << bidibytes/timestat.min << std::endl;
-
- 
-	
-	    }
-    }    
-
-    return;
-  }
-
-  static void Memory(void)
-  {
-    const int Nvec=8;
-    typedef Lattice< iVector< vReal,Nvec> > LatticeVec;
-    typedef iVector<vReal,Nvec> Vec;
-
-    std::vector<int> simd_layout = GridDefaultSimd(Nd,vReal::Nsimd());
-    std::vector<int> mpi_layout  = GridDefaultMpi();
-
-    std::cout<<GridLogMessage << "=================================================================================="<<std::endl;
-    std::cout<<GridLogMessage << "= Benchmarking a*x + y bandwidth"<<std::endl;
-    std::cout<<GridLogMessage << "=================================================================================="<<std::endl;
-    std::cout<<GridLogMessage << "  L  "<<"\t\t"<<"bytes"<<"\t\t\t"<<"GB/s"<<"\t\t"<<"Gflop/s"<<"\t\t seconds"<< "\t\tGB/s / node"<<std::endl;
-    std::cout<<GridLogMessage << "----------------------------------------------------------"<<std::endl;
-  
-    uint64_t NP;
-    uint64_t NN;
-
-
-  uint64_t lmax=48;
-#define NLOOP (100*lmax*lmax*lmax*lmax/lat/lat/lat/lat)
-
-    GridSerialRNG          sRNG;      sRNG.SeedFixedIntegers(std::vector<int>({45,12,81,9}));
-    for(int lat=8;lat<=lmax;lat+=4){
-
-      std::vector<int> latt_size  ({lat*mpi_layout[0],lat*mpi_layout[1],lat*mpi_layout[2],lat*mpi_layout[3]});
-      int64_t vol= latt_size[0]*latt_size[1]*latt_size[2]*latt_size[3];
-      GridCartesian     Grid(latt_size,simd_layout,mpi_layout);
-
-      NP= Grid.RankCount();
-      NN =Grid.NodeCount();
-
-      Vec rn ; random(sRNG,rn);
-
-      LatticeVec z(&Grid); z=rn;
-      LatticeVec x(&Grid); x=rn;
-      LatticeVec y(&Grid); y=rn;
-      double a=2.0;
-
-      uint64_t Nloop=NLOOP;
-
-      double start=usecond();
-      for(int i=0;i<Nloop;i++){
-	z=a*x-y;
-        x._odata[0]=z._odata[0]; // force serial dependency to prevent optimise away
-        y._odata[4]=z._odata[4];
-      }
-      double stop=usecond();
-      double time = (stop-start)/Nloop*1000;
-     
-      double flops=vol*Nvec*2;// mul,add
-      double bytes=3.0*vol*Nvec*sizeof(Real);
-      std::cout<<GridLogMessage<<std::setprecision(3) 
-	       << lat<<"\t\t"<<bytes<<"   \t\t"<<bytes/time<<"\t\t"<<flops/time<<"\t\t"<<(stop-start)/1000./1000.
-	       << "\t\t"<< bytes/time/NN <<std::endl;
-
-    }
-  };
-
-  static double DWF5(int Ls,int L)
-  {
-    RealD mass=0.1;
-    RealD M5  =1.8;
-
-    double mflops;
-    double mflops_best = 0;
-    double mflops_worst= 0;
-    std::vector<double> mflops_all;
-
-    ///////////////////////////////////////////////////////
-    // Set/Get the layout & grid size
-    ///////////////////////////////////////////////////////
-    int threads = GridThread::GetThreads();
-    std::vector<int> mpi = GridDefaultMpi(); assert(mpi.size()==4);
-    std::vector<int> local({L,L,L,L});
-
-    GridCartesian         * TmpGrid   = SpaceTimeGrid::makeFourDimGrid(std::vector<int>({64,64,64,64}), 
-								       GridDefaultSimd(Nd,vComplex::Nsimd()),GridDefaultMpi());
-    uint64_t NP = TmpGrid->RankCount();
-    uint64_t NN = TmpGrid->NodeCount();
-    NN_global=NN;
-    uint64_t SHM=NP/NN;
-
-    std::vector<int> internal;
-    if      ( SHM == 1 )   internal = std::vector<int>({1,1,1,1});
-    else if ( SHM == 2 )   internal = std::vector<int>({2,1,1,1});
-    else if ( SHM == 4 )   internal = std::vector<int>({2,2,1,1});
-    else if ( SHM == 8 )   internal = std::vector<int>({2,2,2,1});
-    else assert(0);
-
-    std::vector<int> nodes({mpi[0]/internal[0],mpi[1]/internal[1],mpi[2]/internal[2],mpi[3]/internal[3]});
-    std::vector<int> latt4({local[0]*nodes[0],local[1]*nodes[1],local[2]*nodes[2],local[3]*nodes[3]});
-
-    ///////// Welcome message ////////////
-    std::cout<<GridLogMessage << "=================================================================================="<<std::endl;
-    std::cout<<GridLogMessage << "Benchmark DWF Ls vec on "<<L<<"^4 local volume "<<std::endl;
-    std::cout<<GridLogMessage << "* Global volume  : "<<GridCmdVectorIntToString(latt4)<<std::endl;
-    std::cout<<GridLogMessage << "* Ls             : "<<Ls<<std::endl;
-    std::cout<<GridLogMessage << "* MPI ranks      : "<<GridCmdVectorIntToString(mpi)<<std::endl;
-    std::cout<<GridLogMessage << "* Intranode      : "<<GridCmdVectorIntToString(internal)<<std::endl;
-    std::cout<<GridLogMessage << "* nodes          : "<<GridCmdVectorIntToString(nodes)<<std::endl;
-    std::cout<<GridLogMessage << "* Using "<<threads<<" threads"<<std::endl;
-    std::cout<<GridLogMessage << "=================================================================================="<<std::endl;
-
-    ///////// Lattice Init ////////////
-    GridCartesian         * UGrid    = SpaceTimeGrid::makeFourDimGrid(latt4, GridDefaultSimd(Nd,vComplex::Nsimd()),GridDefaultMpi());
-    GridRedBlackCartesian * UrbGrid  = SpaceTimeGrid::makeFourDimRedBlackGrid(UGrid);
-    GridCartesian         * sUGrid   = SpaceTimeGrid::makeFourDimDWFGrid(latt4,GridDefaultMpi());
-    GridRedBlackCartesian * sUrbGrid = SpaceTimeGrid::makeFourDimRedBlackGrid(sUGrid);
-    GridCartesian         * sFGrid   = SpaceTimeGrid::makeFiveDimDWFGrid(Ls,UGrid);
-    GridRedBlackCartesian * sFrbGrid = SpaceTimeGrid::makeFiveDimDWFRedBlackGrid(Ls,UGrid);
-
-    ///////// RNG Init ////////////
-    std::vector<int> seeds4({1,2,3,4});
-    std::vector<int> seeds5({5,6,7,8});
-    GridParallelRNG          RNG4(UGrid);  RNG4.SeedFixedIntegers(seeds4);
-    GridParallelRNG          RNG5(sFGrid);  RNG5.SeedFixedIntegers(seeds5);
-    std::cout << GridLogMessage << "Initialised RNGs" << std::endl;
-
-    ///////// Source preparation ////////////
-    LatticeFermion src   (sFGrid); random(RNG5,src);
-    LatticeFermion tmp   (sFGrid);
-
-    RealD N2 = 1.0/::sqrt(norm2(src));
-    src = src*N2;
-    
-    LatticeGaugeField Umu(UGrid);  SU3::HotConfiguration(RNG4,Umu); 
-
-    WilsonFermion5DR sDw(Umu,*sFGrid,*sFrbGrid,*sUGrid,*sUrbGrid,M5);
-    LatticeFermion src_e (sFrbGrid);
-    LatticeFermion src_o (sFrbGrid);
-    LatticeFermion r_e   (sFrbGrid);
-    LatticeFermion r_o   (sFrbGrid);
-    LatticeFermion r_eo  (sFGrid);
-    LatticeFermion err   (sFGrid);
-    {
-
-      pickCheckerboard(Even,src_e,src);
-      pickCheckerboard(Odd,src_o,src);
-
-#if defined(AVX512) 
-      const int num_cases = 6;
-      std::string fmt("A/S ; A/O ; U/S ; U/O ; G/S ; G/O ");
-#else
-      const int num_cases = 4;
-      std::string fmt("U/S ; U/O ; G/S ; G/O ");
-#endif
-      controls Cases [] = {
-#ifdef AVX512
-	{ QCD::WilsonKernelsStatic::OptInlineAsm , QCD::WilsonKernelsStatic::CommsThenCompute ,CartesianCommunicator::CommunicatorPolicySequential  },
-	{ QCD::WilsonKernelsStatic::OptInlineAsm , QCD::WilsonKernelsStatic::CommsAndCompute  ,CartesianCommunicator::CommunicatorPolicySequential  },
-#endif
-	{ QCD::WilsonKernelsStatic::OptHandUnroll, QCD::WilsonKernelsStatic::CommsThenCompute ,CartesianCommunicator::CommunicatorPolicySequential  },
-	{ QCD::WilsonKernelsStatic::OptHandUnroll, QCD::WilsonKernelsStatic::CommsAndCompute  ,CartesianCommunicator::CommunicatorPolicySequential  },
-	{ QCD::WilsonKernelsStatic::OptGeneric   , QCD::WilsonKernelsStatic::CommsThenCompute ,CartesianCommunicator::CommunicatorPolicySequential  },
-	{ QCD::WilsonKernelsStatic::OptGeneric   , QCD::WilsonKernelsStatic::CommsAndCompute  ,CartesianCommunicator::CommunicatorPolicySequential  }
-      }; 
-
-      for(int c=0;c<num_cases;c++) {
-
-	QCD::WilsonKernelsStatic::Comms = Cases[c].CommsOverlap;
-	QCD::WilsonKernelsStatic::Opt   = Cases[c].Opt;
-	CartesianCommunicator::SetCommunicatorPolicy(Cases[c].CommsAsynch);
-
-	std::cout<<GridLogMessage << "=================================================================================="<<std::endl;
-	if ( WilsonKernelsStatic::Opt == WilsonKernelsStatic::OptGeneric   ) std::cout << GridLogMessage<< "* Using GENERIC Nc WilsonKernels" <<std::endl;
-	if ( WilsonKernelsStatic::Opt == WilsonKernelsStatic::OptHandUnroll) std::cout << GridLogMessage<< "* Using Nc=3       WilsonKernels" <<std::endl;
-	if ( WilsonKernelsStatic::Opt == WilsonKernelsStatic::OptInlineAsm ) std::cout << GridLogMessage<< "* Using Asm Nc=3   WilsonKernels" <<std::endl;
-	if ( WilsonKernelsStatic::Comms == WilsonKernelsStatic::CommsAndCompute ) std::cout << GridLogMessage<< "* Using Overlapped Comms/Compute" <<std::endl;
-	if ( WilsonKernelsStatic::Comms == WilsonKernelsStatic::CommsThenCompute) std::cout << GridLogMessage<< "* Using sequential comms compute" <<std::endl;
-	if ( sizeof(Real)==4 )   std::cout << GridLogMessage<< "* SINGLE precision "<<std::endl;
-	if ( sizeof(Real)==8 )   std::cout << GridLogMessage<< "* DOUBLE precision "<<std::endl;
-	std::cout<<GridLogMessage << "=================================================================================="<<std::endl;
-
-	int nwarm = 100;
-	uint64_t ncall = 1000;
-
-	double t0=usecond();
-	sFGrid->Barrier();
-	for(int i=0;i<nwarm;i++){
-	  sDw.DhopEO(src_o,r_e,DaggerNo);
-	}
-	sFGrid->Barrier();
-	double t1=usecond();
-
-	sDw.ZeroCounters();
-	time_statistics timestat;
-	std::vector<double> t_time(ncall);
-	for(uint64_t i=0;i<ncall;i++){
-	  t0=usecond();
-	  sDw.DhopEO(src_o,r_e,DaggerNo);
-	  t1=usecond();
-	  t_time[i] = t1-t0;
-	}
-	sFGrid->Barrier();
-	
-	double volume=Ls;  for(int mu=0;mu<Nd;mu++) volume=volume*latt4[mu];
-	double flops=(1344.0*volume)/2;
-	double mf_hi, mf_lo, mf_err;
-
-	timestat.statistics(t_time);
-	mf_hi = flops/timestat.min;
-	mf_lo = flops/timestat.max;
-	mf_err= flops/timestat.min * timestat.err/timestat.mean;
-
-	mflops = flops/timestat.mean;
-	mflops_all.push_back(mflops);
-	if ( mflops_best == 0   ) mflops_best = mflops;
-	if ( mflops_worst== 0   ) mflops_worst= mflops;
-	if ( mflops>mflops_best ) mflops_best = mflops;
-	if ( mflops<mflops_worst) mflops_worst= mflops;
-
-	std::cout<<GridLogMessage << std::fixed << std::setprecision(1)<<"sDeo mflop/s =   "<< mflops << " ("<<mf_err<<") " << mf_lo<<"-"<<mf_hi <<std::endl;
-	std::cout<<GridLogMessage << std::fixed << std::setprecision(1)<<"sDeo mflop/s per rank   "<< mflops/NP<<std::endl;
-	std::cout<<GridLogMessage << std::fixed << std::setprecision(1)<<"sDeo mflop/s per node   "<< mflops/NN<<std::endl;
-
-	sDw.Report();
-
-      }
-      double robust = mflops_worst/mflops_best;;
-      std::cout<<GridLogMessage << "=================================================================================="<<std::endl;
-      std::cout<<GridLogMessage << L<<"^4 x "<<Ls<< " sDeo Best  mflop/s        =   "<< mflops_best << " ; " << mflops_best/NN<<" per node " <<std::endl;
-      std::cout<<GridLogMessage << L<<"^4 x "<<Ls<< " sDeo Worst mflop/s        =   "<< mflops_worst<< " ; " << mflops_worst/NN<<" per node " <<std::endl;
-
-      std::cout<<GridLogMessage <<std::setprecision(3)<< L<<"^4 x "<<Ls<< " Performance Robustness   =   "<< robust <<std::endl;
-      std::cout<<GridLogMessage <<fmt << std::endl;
-      std::cout<<GridLogMessage;
-
-      for(int i=0;i<mflops_all.size();i++){
-	std::cout<<mflops_all[i]/NN<<" ; " ;
-      }
-      std::cout<<std::endl;
-      std::cout<<GridLogMessage << "=================================================================================="<<std::endl;
-
-    }
-    return mflops_best;
-  }
-
-  static double DWF(int Ls,int L, double & robust)
-  {
-    RealD mass=0.1;
-    RealD M5  =1.8;
-
-    double mflops;
-    double mflops_best = 0;
-    double mflops_worst= 0;
-    std::vector<double> mflops_all;
-
-    ///////////////////////////////////////////////////////
-    // Set/Get the layout & grid size
-    ///////////////////////////////////////////////////////
-    int threads = GridThread::GetThreads();
-    std::vector<int> mpi = GridDefaultMpi(); assert(mpi.size()==4);
-    std::vector<int> local({L,L,L,L});
-
-    GridCartesian         * TmpGrid   = SpaceTimeGrid::makeFourDimGrid(std::vector<int>({64,64,64,64}), 
-								       GridDefaultSimd(Nd,vComplex::Nsimd()),GridDefaultMpi());
-    uint64_t NP = TmpGrid->RankCount();
-    uint64_t NN = TmpGrid->NodeCount();
-    NN_global=NN;
-    uint64_t SHM=NP/NN;
-
-    std::vector<int> internal;
-    if      ( SHM == 1 )   internal = std::vector<int>({1,1,1,1});
-    else if ( SHM == 2 )   internal = std::vector<int>({2,1,1,1});
-    else if ( SHM == 4 )   internal = std::vector<int>({2,2,1,1});
-    else if ( SHM == 8 )   internal = std::vector<int>({2,2,2,1});
-    else assert(0);
-
-    std::vector<int> nodes({mpi[0]/internal[0],mpi[1]/internal[1],mpi[2]/internal[2],mpi[3]/internal[3]});
-    std::vector<int> latt4({local[0]*nodes[0],local[1]*nodes[1],local[2]*nodes[2],local[3]*nodes[3]});
-
-    ///////// Welcome message ////////////
-    std::cout<<GridLogMessage << "=================================================================================="<<std::endl;
-    std::cout<<GridLogMessage << "Benchmark DWF on "<<L<<"^4 local volume "<<std::endl;
-    std::cout<<GridLogMessage << "* Global volume  : "<<GridCmdVectorIntToString(latt4)<<std::endl;
-    std::cout<<GridLogMessage << "* Ls             : "<<Ls<<std::endl;
-    std::cout<<GridLogMessage << "* MPI ranks      : "<<GridCmdVectorIntToString(mpi)<<std::endl;
-    std::cout<<GridLogMessage << "* Intranode      : "<<GridCmdVectorIntToString(internal)<<std::endl;
-    std::cout<<GridLogMessage << "* nodes          : "<<GridCmdVectorIntToString(nodes)<<std::endl;
-    std::cout<<GridLogMessage << "* Using "<<threads<<" threads"<<std::endl;
-    std::cout<<GridLogMessage << "=================================================================================="<<std::endl;
-
-
-    ///////// Lattice Init ////////////
-    GridCartesian         * UGrid   = SpaceTimeGrid::makeFourDimGrid(latt4, GridDefaultSimd(Nd,vComplex::Nsimd()),GridDefaultMpi());
-    GridRedBlackCartesian * UrbGrid = SpaceTimeGrid::makeFourDimRedBlackGrid(UGrid);
-    GridCartesian         * FGrid   = SpaceTimeGrid::makeFiveDimGrid(Ls,UGrid);
-    GridRedBlackCartesian * FrbGrid = SpaceTimeGrid::makeFiveDimRedBlackGrid(Ls,UGrid);
-
-    
-    ///////// RNG Init ////////////
-    std::vector<int> seeds4({1,2,3,4});
-    std::vector<int> seeds5({5,6,7,8});
-    GridParallelRNG          RNG4(UGrid);  RNG4.SeedFixedIntegers(seeds4);
-    GridParallelRNG          RNG5(FGrid);  RNG5.SeedFixedIntegers(seeds5);
-    std::cout << GridLogMessage << "Initialised RNGs" << std::endl;
-
-    ///////// Source preparation ////////////
-    LatticeFermion src   (FGrid); random(RNG5,src);
-    LatticeFermion ref   (FGrid);
-    LatticeFermion tmp   (FGrid);
-
-    RealD N2 = 1.0/::sqrt(norm2(src));
-    src = src*N2;
-    
-    LatticeGaugeField Umu(UGrid);  SU3::HotConfiguration(RNG4,Umu); 
-
-    DomainWallFermionR Dw(Umu,*FGrid,*FrbGrid,*UGrid,*UrbGrid,mass,M5);
-
-    ////////////////////////////////////
-    // Naive wilson implementation
-    ////////////////////////////////////
-    {
-      LatticeGaugeField Umu5d(FGrid); 
-      std::vector<LatticeColourMatrix> U(4,FGrid);
-      for(int ss=0;ss<Umu._grid->oSites();ss++){
-	for(int s=0;s<Ls;s++){
-	  Umu5d._odata[Ls*ss+s] = Umu._odata[ss];
-	}
-      }
-      ref = zero;
-      for(int mu=0;mu<Nd;mu++){
-	U[mu] = PeekIndex<LorentzIndex>(Umu5d,mu);
-      }
-      for(int mu=0;mu<Nd;mu++){
-	
-	tmp = U[mu]*Cshift(src,mu+1,1);
-	ref=ref + tmp - Gamma(Gmu[mu])*tmp;
-	
-	tmp =adj(U[mu])*src;
-	tmp =Cshift(tmp,mu+1,-1);
-	ref=ref + tmp + Gamma(Gmu[mu])*tmp;
-      }
-      ref = -0.5*ref;
-    }
-
-    LatticeFermion src_e (FrbGrid);
-    LatticeFermion src_o (FrbGrid);
-    LatticeFermion r_e   (FrbGrid);
-    LatticeFermion r_o   (FrbGrid);
-    LatticeFermion r_eo  (FGrid);
-    LatticeFermion err   (FGrid);
-    {
-
-      pickCheckerboard(Even,src_e,src);
-      pickCheckerboard(Odd,src_o,src);
-
-#if defined(AVX512) 
-      const int num_cases = 6;
-      std::string fmt("A/S ; A/O ; U/S ; U/O ; G/S ; G/O ");
-#else
-      const int num_cases = 4;
-      std::string fmt("U/S ; U/O ; G/S ; G/O ");
-#endif
-      controls Cases [] = {
-#ifdef AVX512
-	{ QCD::WilsonKernelsStatic::OptInlineAsm , QCD::WilsonKernelsStatic::CommsThenCompute ,CartesianCommunicator::CommunicatorPolicySequential  },
-	{ QCD::WilsonKernelsStatic::OptInlineAsm , QCD::WilsonKernelsStatic::CommsAndCompute  ,CartesianCommunicator::CommunicatorPolicySequential  },
-#endif
-	{ QCD::WilsonKernelsStatic::OptHandUnroll, QCD::WilsonKernelsStatic::CommsThenCompute ,CartesianCommunicator::CommunicatorPolicySequential  },
-	{ QCD::WilsonKernelsStatic::OptHandUnroll, QCD::WilsonKernelsStatic::CommsAndCompute  ,CartesianCommunicator::CommunicatorPolicySequential  },
-	{ QCD::WilsonKernelsStatic::OptGeneric   , QCD::WilsonKernelsStatic::CommsThenCompute ,CartesianCommunicator::CommunicatorPolicySequential  },
-	{ QCD::WilsonKernelsStatic::OptGeneric   , QCD::WilsonKernelsStatic::CommsAndCompute  ,CartesianCommunicator::CommunicatorPolicySequential  }
-      }; 
-
-      for(int c=0;c<num_cases;c++) {
-
-	QCD::WilsonKernelsStatic::Comms = Cases[c].CommsOverlap;
-	QCD::WilsonKernelsStatic::Opt   = Cases[c].Opt;
-	CartesianCommunicator::SetCommunicatorPolicy(Cases[c].CommsAsynch);
-
-	std::cout<<GridLogMessage << "=================================================================================="<<std::endl;
-	if ( WilsonKernelsStatic::Opt == WilsonKernelsStatic::OptGeneric   ) std::cout << GridLogMessage<< "* Using GENERIC Nc WilsonKernels" <<std::endl;
-	if ( WilsonKernelsStatic::Opt == WilsonKernelsStatic::OptHandUnroll) std::cout << GridLogMessage<< "* Using Nc=3       WilsonKernels" <<std::endl;
-	if ( WilsonKernelsStatic::Opt == WilsonKernelsStatic::OptInlineAsm ) std::cout << GridLogMessage<< "* Using Asm Nc=3   WilsonKernels" <<std::endl;
-	if ( WilsonKernelsStatic::Comms == WilsonKernelsStatic::CommsAndCompute ) std::cout << GridLogMessage<< "* Using Overlapped Comms/Compute" <<std::endl;
-	if ( WilsonKernelsStatic::Comms == WilsonKernelsStatic::CommsThenCompute) std::cout << GridLogMessage<< "* Using sequential comms compute" <<std::endl;
-	if ( sizeof(Real)==4 )   std::cout << GridLogMessage<< "* SINGLE precision "<<std::endl;
-	if ( sizeof(Real)==8 )   std::cout << GridLogMessage<< "* DOUBLE precision "<<std::endl;
-	std::cout<<GridLogMessage << "=================================================================================="<<std::endl;
-
-	int nwarm = 200;
-	double t0=usecond();
-	FGrid->Barrier();
-	for(int i=0;i<nwarm;i++){
-	  Dw.DhopEO(src_o,r_e,DaggerNo);
-	}
-	FGrid->Barrier();
-	double t1=usecond();
-	//	uint64_t ncall = (uint64_t) 2.5*1000.0*1000.0*nwarm/(t1-t0);
-	//	if (ncall < 500) ncall = 500;
-	uint64_t ncall = 1000;
-
-	FGrid->Broadcast(0,&ncall,sizeof(ncall));
-
-	//	std::cout << GridLogMessage << " Estimate " << ncall << " calls per second"<<std::endl;
-	Dw.ZeroCounters();
-
-	time_statistics timestat;
-	std::vector<double> t_time(ncall);
-	for(uint64_t i=0;i<ncall;i++){
-	  t0=usecond();
-	  Dw.DhopEO(src_o,r_e,DaggerNo);
-	  t1=usecond();
-	  t_time[i] = t1-t0;
-	}
-	FGrid->Barrier();
-	
-	double volume=Ls;  for(int mu=0;mu<Nd;mu++) volume=volume*latt4[mu];
-	double flops=(1344.0*volume)/2;
-	double mf_hi, mf_lo, mf_err;
-
-	timestat.statistics(t_time);
-	mf_hi = flops/timestat.min;
-	mf_lo = flops/timestat.max;
-	mf_err= flops/timestat.min * timestat.err/timestat.mean;
-
-	mflops = flops/timestat.mean;
-	mflops_all.push_back(mflops);
-	if ( mflops_best == 0   ) mflops_best = mflops;
-	if ( mflops_worst== 0   ) mflops_worst= mflops;
-	if ( mflops>mflops_best ) mflops_best = mflops;
-	if ( mflops<mflops_worst) mflops_worst= mflops;
-
-	std::cout<<GridLogMessage << std::fixed << std::setprecision(1)<<"Deo mflop/s =   "<< mflops << " ("<<mf_err<<") " << mf_lo<<"-"<<mf_hi <<std::endl;
-	std::cout<<GridLogMessage << std::fixed << std::setprecision(1)<<"Deo mflop/s per rank   "<< mflops/NP<<std::endl;
-	std::cout<<GridLogMessage << std::fixed << std::setprecision(1)<<"Deo mflop/s per node   "<< mflops/NN<<std::endl;
-
-	Dw.Report();
-
-	Dw.DhopEO(src_o,r_e,DaggerNo);
-	Dw.DhopOE(src_e,r_o,DaggerNo);
-	setCheckerboard(r_eo,r_o);
-	setCheckerboard(r_eo,r_e);
-	err = r_eo-ref; 
-	std::cout<<GridLogMessage << "norm diff   "<< norm2(err)<<std::endl;
-	assert((norm2(err)<1.0e-4));
-
-      }
-      robust = mflops_worst/mflops_best;
-      std::cout<<GridLogMessage << "=================================================================================="<<std::endl;
-      std::cout<<GridLogMessage << L<<"^4 x "<<Ls<< " Deo Best  mflop/s        =   "<< mflops_best << " ; " << mflops_best/NN<<" per node " <<std::endl;
-      std::cout<<GridLogMessage << L<<"^4 x "<<Ls<< " Deo Worst mflop/s        =   "<< mflops_worst<< " ; " << mflops_worst/NN<<" per node " <<std::endl;
-      std::cout<<GridLogMessage << std::fixed<<std::setprecision(3)<< L<<"^4 x "<<Ls<< " Performance Robustness   =   "<< robust  <<std::endl;
-      std::cout<<GridLogMessage <<fmt << std::endl;
-      std::cout<<GridLogMessage ;
-
-      for(int i=0;i<mflops_all.size();i++){
-	std::cout<<mflops_all[i]/NN<<" ; " ;
-      }
-      std::cout<<std::endl;
-      std::cout<<GridLogMessage << "=================================================================================="<<std::endl;
-
-    }
-    return mflops_best;
-  }
-
-};
-
-int main (int argc, char ** argv)
-{
-  Grid_init(&argc,&argv);
-
-  CartesianCommunicator::SetCommunicatorPolicy(CartesianCommunicator::CommunicatorPolicySequential);
-#ifdef KNL
-  LebesgueOrder::Block = std::vector<int>({8,2,2,2});
-#else
-  LebesgueOrder::Block = std::vector<int>({2,2,2,2});
-#endif
-  Benchmark::Decomposition();
-
-  int do_memory=1;
-  int do_comms =1;
-  int do_su3   =0;
-  int do_wilson=1;
-  int do_dwf   =1;
-
-  if ( do_su3 ) {
-    // empty for now
-  }
-#if 1
-  int sel=2;
-  std::vector<int> L_list({8,12,16,24});
-#else
-  int sel=1;
-  std::vector<int> L_list({8,12});
-#endif
-  int selm1=sel-1;
-  std::vector<double> robust_list;
-
-  std::vector<double> wilson;
-  std::vector<double> dwf4;
-  std::vector<double> dwf5;
-
-  if ( do_wilson ) {
-    int Ls=1;
-    std::cout<<GridLogMessage << "=================================================================================="<<std::endl;
-    std::cout<<GridLogMessage << " Wilson dslash 4D vectorised" <<std::endl;
-    std::cout<<GridLogMessage << "=================================================================================="<<std::endl;
-    for(int l=0;l<L_list.size();l++){
-      double robust;
-      wilson.push_back(Benchmark::DWF(1,L_list[l],robust));
-    }
-  }
-
-  int Ls=16;
-  if ( do_dwf ) {
-    std::cout<<GridLogMessage << "=================================================================================="<<std::endl;
-    std::cout<<GridLogMessage << " Domain wall dslash 4D vectorised" <<std::endl;
-    std::cout<<GridLogMessage << "=================================================================================="<<std::endl;
-    for(int l=0;l<L_list.size();l++){
-      double robust;
-      double result = Benchmark::DWF(Ls,L_list[l],robust) ;
-      dwf4.push_back(result);
-      robust_list.push_back(robust);
-    }
-  }
-
-  if ( do_dwf ) {
-    std::cout<<GridLogMessage << "=================================================================================="<<std::endl;
-    std::cout<<GridLogMessage << " Domain wall dslash 4D vectorised" <<std::endl;
-    std::cout<<GridLogMessage << "=================================================================================="<<std::endl;
-    for(int l=0;l<L_list.size();l++){
-      dwf5.push_back(Benchmark::DWF5(Ls,L_list[l]));
-    }
-
-  }
-
-  if ( do_dwf ) {
-
-  std::cout<<GridLogMessage << "=================================================================================="<<std::endl;
-  std::cout<<GridLogMessage << " Summary table Ls="<<Ls <<std::endl;
-  std::cout<<GridLogMessage << "=================================================================================="<<std::endl;
-  std::cout<<GridLogMessage << "L \t\t Wilson \t DWF4 \t DWF5 " <<std::endl;
-  for(int l=0;l<L_list.size();l++){
-    std::cout<<GridLogMessage << L_list[l] <<" \t\t "<< wilson[l]<<" \t "<<dwf4[l]<<" \t "<<dwf5[l] <<std::endl;
-  }
-  std::cout<<GridLogMessage << "=================================================================================="<<std::endl;
-  }
-
-  int NN=NN_global;
-  if ( do_memory ) {
-    std::cout<<GridLogMessage << "=================================================================================="<<std::endl;
-    std::cout<<GridLogMessage << " Memory benchmark " <<std::endl;
-    std::cout<<GridLogMessage << "=================================================================================="<<std::endl;
-    Benchmark::Memory();
-  }
-
-  if ( do_comms && (NN>1) ) {
-    std::cout<<GridLogMessage << "=================================================================================="<<std::endl;
-    std::cout<<GridLogMessage << " Communications benchmark " <<std::endl;
-    std::cout<<GridLogMessage << "=================================================================================="<<std::endl;
-    Benchmark::Comms();
-  }
-
-  if ( do_dwf ) {
-  std::cout<<GridLogMessage << "=================================================================================="<<std::endl;
-  std::cout<<GridLogMessage << " Per Node Summary table Ls="<<Ls <<std::endl;
-  std::cout<<GridLogMessage << "=================================================================================="<<std::endl;
-  std::cout<<GridLogMessage << " L \t\t Wilson\t\t DWF4  \t\t DWF5 " <<std::endl;
-  for(int l=0;l<L_list.size();l++){
-    std::cout<<GridLogMessage << L_list[l] <<" \t\t "<< wilson[l]/NN<<" \t "<<dwf4[l]/NN<<" \t "<<dwf5[l] /NN<<std::endl;
-  }
-  std::cout<<GridLogMessage << "=================================================================================="<<std::endl;
-
-  std::cout<<GridLogMessage << "=================================================================================="<<std::endl;
-  std::cout<<GridLogMessage << " Comparison point     result: "  << 0.5*(dwf4[sel]+dwf4[selm1])/NN << " Mflop/s per node"<<std::endl;
-  std::cout<<GridLogMessage << " Comparison point is 0.5*("<<dwf4[sel]/NN<<"+"<<dwf4[selm1]/NN << ") "<<std::endl;
-  std::cout<<std::setprecision(3);
-  std::cout<<GridLogMessage << " Comparison point robustness: "  << robust_list[sel] <<std::endl;
-  std::cout<<GridLogMessage << "=================================================================================="<<std::endl;
-
-  }
-
-
-  Grid_finalize();
-}

benchmarks/Benchmark_comms.cc

@@ -31,32 +31,6 @@ using namespace std;
 using namespace Grid;
 using namespace Grid::QCD;
 
-struct time_statistics{
-  double mean;
-  double err;
-  double min;
-  double max;
-
-  void statistics(std::vector<double> v){
-      double sum = std::accumulate(v.begin(), v.end(), 0.0);
-      mean = sum / v.size();
-
-      std::vector<double> diff(v.size());
-      std::transform(v.begin(), v.end(), diff.begin(), [=](double x) { return x - mean; });
-      double sq_sum = std::inner_product(diff.begin(), diff.end(), diff.begin(), 0.0);
-      err = std::sqrt(sq_sum / (v.size()*(v.size() - 1)));
-
-      auto result = std::minmax_element(v.begin(), v.end());
-      min = *result.first;
-      max = *result.second;
-}
-};
-
-void header(){
-  std::cout <<GridLogMessage << " L  "<<"\t"<<" Ls  "<<"\t"
-            <<std::setw(11)<<"bytes"<<"MB/s uni (err/min/max)"<<"\t\t"<<"MB/s bidi (err/min/max)"<<std::endl;
-};
-
 int main (int argc, char ** argv)
 {
   Grid_init(&argc,&argv);
@@ -66,21 +40,17 @@ int main (int argc, char ** argv)
   int threads = GridThread::GetThreads();
   std::cout<<GridLogMessage << "Grid is setup to use "<<threads<<" threads"<<std::endl;
 
-  int Nloop=100;
+  int Nloop=10;
   int nmu=0;
-  int maxlat=32;
   for(int mu=0;mu<Nd;mu++) if (mpi_layout[mu]>1) nmu++;
 
-  std::cout << GridLogMessage << "Number of iterations to average: "<< Nloop << std::endl;
-  std::vector<double> t_time(Nloop);
-  time_statistics timestat;
-
   std::cout<<GridLogMessage << "===================================================================================================="<<std::endl;
   std::cout<<GridLogMessage << "= Benchmarking concurrent halo exchange in "<<nmu<<" dimensions"<<std::endl;
   std::cout<<GridLogMessage << "===================================================================================================="<<std::endl;
-  header();
+  std::cout<<GridLogMessage << "  L  "<<"\t\t"<<" Ls  "<<"\t\t"<<"bytes"<<"\t\t"<<"MB/s uni"<<"\t\t"<<"MB/s bidi"<<std::endl;
-  for(int lat=4;lat<=maxlat;lat+=4){
+  int maxlat=16;
-    for(int Ls=8;Ls<=8;Ls*=2){
+  for(int lat=4;lat<=maxlat;lat+=2){
+    for(int Ls=1;Ls<=16;Ls*=2){
 
       std::vector<int> latt_size  ({lat*mpi_layout[0],
       				    lat*mpi_layout[1],
@@ -88,23 +58,15 @@ int main (int argc, char ** argv)
       				    lat*mpi_layout[3]});
 
       GridCartesian     Grid(latt_size,simd_layout,mpi_layout);
-      RealD Nrank = Grid._Nprocessors;
-      RealD Nnode = Grid.NodeCount();
-      RealD ppn = Nrank/Nnode;
 
-      std::vector<Vector<HalfSpinColourVectorD> > xbuf(8);	
+      std::vector<std::vector<HalfSpinColourVectorD> > xbuf(8,std::vector<HalfSpinColourVectorD>(lat*lat*lat*Ls));
-      std::vector<Vector<HalfSpinColourVectorD> > rbuf(8);
+      std::vector<std::vector<HalfSpinColourVectorD> > rbuf(8,std::vector<HalfSpinColourVectorD>(lat*lat*lat*Ls));
 
       int ncomm;
       int bytes=lat*lat*lat*Ls*sizeof(HalfSpinColourVectorD);
-      for(int mu=0;mu<8;mu++){
-	xbuf[mu].resize(lat*lat*lat*Ls);
-	rbuf[mu].resize(lat*lat*lat*Ls);
-	//	std::cout << " buffers " << std::hex << (uint64_t)&xbuf[mu][0] <<" " << (uint64_t)&rbuf[mu][0] <<std::endl;
-      }
 
-      for(int i=0;i<Nloop;i++){
       double start=usecond();
+      for(int i=0;i<Nloop;i++){
 
 	std::vector<CartesianCommunicator::CommsRequest_t> requests;
 
@@ -117,6 +79,7 @@ int main (int argc, char ** argv)
 	    int comm_proc=1;
 	    int xmit_to_rank;
 	    int recv_from_rank;
+	    
 	    Grid.ShiftedRanks(mu,comm_proc,xmit_to_rank,recv_from_rank);
 	    Grid.SendToRecvFromBegin(requests,
 				   (void *)&xbuf[mu][0],
@@ -139,24 +102,18 @@ int main (int argc, char ** argv)
 	}
 	Grid.SendToRecvFromComplete(requests);
 	Grid.Barrier();
-	double stop=usecond();
+
-	t_time[i] = stop-start; // microseconds
       }
+      double stop=usecond();
 
-      timestat.statistics(t_time);
+      double dbytes    = bytes;
-
+      double xbytes    = Nloop*dbytes*2.0*ncomm;
-      double dbytes    = bytes*ppn;
-      double xbytes    = dbytes*2.0*ncomm;
       double rbytes    = xbytes;
       double bidibytes = xbytes+rbytes;
 
-      std::cout<<GridLogMessage << std::setw(4) << lat<<"\t"<<Ls<<"\t"
+      double time = stop-start; // microseconds
-               <<std::setw(11) << bytes<< std::fixed << std::setprecision(1) << std::setw(7)
-               <<std::right<< xbytes/timestat.mean<<"  "<< xbytes*timestat.err/(timestat.mean*timestat.mean)<< " "
-               <<xbytes/timestat.max <<" "<< xbytes/timestat.min  
-               << "\t\t"<<std::setw(7)<< bidibytes/timestat.mean<< "  " << bidibytes*timestat.err/(timestat.mean*timestat.mean) << " "
-               << bidibytes/timestat.max << " " << bidibytes/timestat.min << std::endl;
 
+      std::cout<<GridLogMessage << lat<<"\t\t"<<Ls<<"\t\t"<<bytes<<"\t\t"<<xbytes/time<<"\t\t"<<bidibytes/time<<std::endl;
     }
   }    
 
@@ -164,32 +121,25 @@ int main (int argc, char ** argv)
   std::cout<<GridLogMessage << "===================================================================================================="<<std::endl;
   std::cout<<GridLogMessage << "= Benchmarking sequential halo exchange in "<<nmu<<" dimensions"<<std::endl;
   std::cout<<GridLogMessage << "===================================================================================================="<<std::endl;
-  header();
+  std::cout<<GridLogMessage << "  L  "<<"\t\t"<<" Ls  "<<"\t\t"<<"bytes"<<"\t\t"<<"MB/s uni"<<"\t\t"<<"MB/s bidi"<<std::endl;
 
-  for(int lat=4;lat<=maxlat;lat+=4){
+
-    for(int Ls=8;Ls<=8;Ls*=2){
+  for(int lat=4;lat<=maxlat;lat+=2){
+    for(int Ls=1;Ls<=16;Ls*=2){
 
       std::vector<int> latt_size  ({lat,lat,lat,lat});
 
       GridCartesian     Grid(latt_size,simd_layout,mpi_layout);
-      RealD Nrank = Grid._Nprocessors;
-      RealD Nnode = Grid.NodeCount();
-      RealD ppn = Nrank/Nnode;
 
-      std::vector<Vector<HalfSpinColourVectorD> > xbuf(8);
+      std::vector<std::vector<HalfSpinColourVectorD> > xbuf(8,std::vector<HalfSpinColourVectorD>(lat*lat*lat*Ls));
-      std::vector<Vector<HalfSpinColourVectorD> > rbuf(8);
+      std::vector<std::vector<HalfSpinColourVectorD> > rbuf(8,std::vector<HalfSpinColourVectorD>(lat*lat*lat*Ls));
 
-      for(int mu=0;mu<8;mu++){
-	xbuf[mu].resize(lat*lat*lat*Ls);
-	rbuf[mu].resize(lat*lat*lat*Ls);
-	//	std::cout << " buffers " << std::hex << (uint64_t)&xbuf[mu][0] <<" " << (uint64_t)&rbuf[mu][0] <<std::endl;
-      }
 
       int ncomm;
       int bytes=lat*lat*lat*Ls*sizeof(HalfSpinColourVectorD);
 
-      for(int i=0;i<Nloop;i++){
       double start=usecond();
+      for(int i=0;i<Nloop;i++){
     
 	ncomm=0;
 	for(int mu=0;mu<4;mu++){
@@ -228,37 +178,30 @@ int main (int argc, char ** argv)
 	  }
 	}
 	Grid.Barrier();
-	double stop=usecond();
-	t_time[i] = stop-start; // microseconds
-
       }
 
-      timestat.statistics(t_time);
+      double stop=usecond();
       
-      double dbytes    = bytes*ppn;
+      double dbytes    = bytes;
-      double xbytes    = dbytes*2.0*ncomm;
+      double xbytes    = Nloop*dbytes*2.0*ncomm;
       double rbytes    = xbytes;
       double bidibytes = xbytes+rbytes;
 
-    std::cout<<GridLogMessage << std::setw(4) << lat<<"\t"<<Ls<<"\t"
+      double time = stop-start;
-               <<std::setw(11) << bytes<< std::fixed << std::setprecision(1) << std::setw(7)
-               <<std::right<< xbytes/timestat.mean<<"  "<< xbytes*timestat.err/(timestat.mean*timestat.mean)<< " "
-               <<xbytes/timestat.max <<" "<< xbytes/timestat.min  
-               << "\t\t"<<std::setw(7)<< bidibytes/timestat.mean<< "  " << bidibytes*timestat.err/(timestat.mean*timestat.mean) << " "
-               << bidibytes/timestat.max << " " << bidibytes/timestat.min << std::endl;
 
-      
+      std::cout<<GridLogMessage << lat<<"\t\t"<<Ls<<"\t\t"<<bytes<<"\t\t"<<xbytes/time<<"\t\t"<<bidibytes/time<<std::endl;
     }
   }  
 
 
+  Nloop=100;
   std::cout<<GridLogMessage << "===================================================================================================="<<std::endl;
   std::cout<<GridLogMessage << "= Benchmarking concurrent STENCIL halo exchange in "<<nmu<<" dimensions"<<std::endl;
   std::cout<<GridLogMessage << "===================================================================================================="<<std::endl;
-  header();
+  std::cout<<GridLogMessage << "  L  "<<"\t\t"<<" Ls  "<<"\t\t"<<"bytes"<<"\t\t"<<"MB/s uni"<<"\t\t"<<"MB/s bidi"<<std::endl;
 
-  for(int lat=4;lat<=maxlat;lat+=4){
+  for(int lat=4;lat<=maxlat;lat+=2){
-    for(int Ls=8;Ls<=8;Ls*=2){
+    for(int Ls=1;Ls<=16;Ls*=2){
 
       std::vector<int> latt_size  ({lat*mpi_layout[0],
       				    lat*mpi_layout[1],
@@ -266,9 +209,6 @@ int main (int argc, char ** argv)
       				    lat*mpi_layout[3]});
 
       GridCartesian     Grid(latt_size,simd_layout,mpi_layout);
-      RealD Nrank = Grid._Nprocessors;
-      RealD Nnode = Grid.NodeCount();
-      RealD ppn = Nrank/Nnode;
 
       std::vector<HalfSpinColourVectorD *> xbuf(8);
       std::vector<HalfSpinColourVectorD *> rbuf(8);
@@ -276,115 +216,16 @@ int main (int argc, char ** argv)
       for(int d=0;d<8;d++){
 	xbuf[d] = (HalfSpinColourVectorD *)Grid.ShmBufferMalloc(lat*lat*lat*Ls*sizeof(HalfSpinColourVectorD));
 	rbuf[d] = (HalfSpinColourVectorD *)Grid.ShmBufferMalloc(lat*lat*lat*Ls*sizeof(HalfSpinColourVectorD));
-	bzero((void *)xbuf[d],lat*lat*lat*Ls*sizeof(HalfSpinColourVectorD));
-	bzero((void *)rbuf[d],lat*lat*lat*Ls*sizeof(HalfSpinColourVectorD));
       }
 
       int ncomm;
       int bytes=lat*lat*lat*Ls*sizeof(HalfSpinColourVectorD);
 
-      double dbytes;
+      double start=usecond();
       for(int i=0;i<Nloop;i++){
-	double start=usecond();
-
-	dbytes=0;
-	ncomm=0;
 
 	std::vector<CartesianCommunicator::CommsRequest_t> requests;
 
-	for(int mu=0;mu<4;mu++){
-	
-
-	  if (mpi_layout[mu]>1 ) {
-	  
-	    ncomm++;
-	    int comm_proc=1;
-	    int xmit_to_rank;
-	    int recv_from_rank;
-	    Grid.ShiftedRanks(mu,comm_proc,xmit_to_rank,recv_from_rank);
-	    dbytes+=
-	      Grid.StencilSendToRecvFromBegin(requests,
-					      (void *)&xbuf[mu][0],
-					      xmit_to_rank,
-					      (void *)&rbuf[mu][0],
-					      recv_from_rank,
-					      bytes,mu);
-	
-	    comm_proc = mpi_layout[mu]-1;
-	  
-	    Grid.ShiftedRanks(mu,comm_proc,xmit_to_rank,recv_from_rank);
-	    dbytes+=
-	      Grid.StencilSendToRecvFromBegin(requests,
-					      (void *)&xbuf[mu+4][0],
-					      xmit_to_rank,
-					      (void *)&rbuf[mu+4][0],
-					      recv_from_rank,
-					      bytes,mu+4);
-	  
-	  }
-	}
-	Grid.StencilSendToRecvFromComplete(requests,0);
-	Grid.Barrier();
-	double stop=usecond();
-	t_time[i] = stop-start; // microseconds
-	
-      }
-
-      timestat.statistics(t_time);
-
-      dbytes=dbytes*ppn;
-      double xbytes    = dbytes*0.5;
-      double rbytes    = dbytes*0.5;
-      double bidibytes = dbytes;
-
-      std::cout<<GridLogMessage << std::setw(4) << lat<<"\t"<<Ls<<"\t"
-               <<std::setw(11) << bytes<< std::fixed << std::setprecision(1) << std::setw(7)
-               <<std::right<< xbytes/timestat.mean<<"  "<< xbytes*timestat.err/(timestat.mean*timestat.mean)<< " "
-               <<xbytes/timestat.max <<" "<< xbytes/timestat.min  
-               << "\t\t"<<std::setw(7)<< bidibytes/timestat.mean<< "  " << bidibytes*timestat.err/(timestat.mean*timestat.mean) << " "
-               << bidibytes/timestat.max << " " << bidibytes/timestat.min << std::endl;
-
-
-    }
-  }    
-
-
-  std::cout<<GridLogMessage << "===================================================================================================="<<std::endl;
-  std::cout<<GridLogMessage << "= Benchmarking sequential STENCIL halo exchange in "<<nmu<<" dimensions"<<std::endl;
-  std::cout<<GridLogMessage << "===================================================================================================="<<std::endl;
-  header();
-
-  for(int lat=4;lat<=maxlat;lat+=4){
-    for(int Ls=8;Ls<=8;Ls*=2){
-
-      std::vector<int> latt_size  ({lat*mpi_layout[0],
-      				    lat*mpi_layout[1],
-      				    lat*mpi_layout[2],
-      				    lat*mpi_layout[3]});
-
-      GridCartesian     Grid(latt_size,simd_layout,mpi_layout);
-      RealD Nrank = Grid._Nprocessors;
-      RealD Nnode = Grid.NodeCount();
-      RealD ppn = Nrank/Nnode;
-
-      std::vector<HalfSpinColourVectorD *> xbuf(8);
-      std::vector<HalfSpinColourVectorD *> rbuf(8);
-      Grid.ShmBufferFreeAll();
-      for(int d=0;d<8;d++){
-	xbuf[d] = (HalfSpinColourVectorD *)Grid.ShmBufferMalloc(lat*lat*lat*Ls*sizeof(HalfSpinColourVectorD));
-	rbuf[d] = (HalfSpinColourVectorD *)Grid.ShmBufferMalloc(lat*lat*lat*Ls*sizeof(HalfSpinColourVectorD));
-	bzero((void *)xbuf[d],lat*lat*lat*Ls*sizeof(HalfSpinColourVectorD));
-	bzero((void *)rbuf[d],lat*lat*lat*Ls*sizeof(HalfSpinColourVectorD));
-      }
-
-      int ncomm;
-      int bytes=lat*lat*lat*Ls*sizeof(HalfSpinColourVectorD);
-      double dbytes;
-      for(int i=0;i<Nloop;i++){
-	double start=usecond();
-
-	std::vector<CartesianCommunicator::CommsRequest_t> requests;
-	dbytes=0;
 	ncomm=0;
 	for(int mu=0;mu<4;mu++){
 	
@@ -396,64 +237,52 @@ int main (int argc, char ** argv)
 	    int recv_from_rank;
 	    
 	    Grid.ShiftedRanks(mu,comm_proc,xmit_to_rank,recv_from_rank);
-	    dbytes+=
+	    Grid.StencilSendToRecvFromBegin(requests,
-	      Grid.StencilSendToRecvFromBegin(requests,
+					    (void *)&xbuf[mu][0],
-					      (void *)&xbuf[mu][0],
+					    xmit_to_rank,
-					      xmit_to_rank,
+					    (void *)&rbuf[mu][0],
-					      (void *)&rbuf[mu][0],
+					    recv_from_rank,
-					      recv_from_rank,
+					    bytes);
-					      bytes,mu);
+	
-	    Grid.StencilSendToRecvFromComplete(requests,mu);
-	    requests.resize(0);
-
 	    comm_proc = mpi_layout[mu]-1;
 	  
 	    Grid.ShiftedRanks(mu,comm_proc,xmit_to_rank,recv_from_rank);
-	    dbytes+=
+	    Grid.StencilSendToRecvFromBegin(requests,
-	      Grid.StencilSendToRecvFromBegin(requests,
+					    (void *)&xbuf[mu+4][0],
-					      (void *)&xbuf[mu+4][0],
+					    xmit_to_rank,
-					      xmit_to_rank,
+					    (void *)&rbuf[mu+4][0],
-					      (void *)&rbuf[mu+4][0],
+					    recv_from_rank,
-					      recv_from_rank,
+					    bytes);
-					      bytes,mu+4);
-	    Grid.StencilSendToRecvFromComplete(requests,mu+4);
-	    requests.resize(0);
 	  
 	  }
 	}
+	Grid.StencilSendToRecvFromComplete(requests);
 	Grid.Barrier();
-	double stop=usecond();
+
-	t_time[i] = stop-start; // microseconds
-	
       }
+      double stop=usecond();
 
-      timestat.statistics(t_time);
+      double dbytes    = bytes;
+      double xbytes    = Nloop*dbytes*2.0*ncomm;
+      double rbytes    = xbytes;
+      double bidibytes = xbytes+rbytes;
 
-      dbytes=dbytes*ppn;
+      double time = stop-start; // microseconds
-      double xbytes    = dbytes*0.5;
-      double rbytes    = dbytes*0.5;
-      double bidibytes = dbytes;
 
-
+      std::cout<<GridLogMessage << lat<<"\t\t"<<Ls<<"\t\t"<<bytes<<"\t\t"<<xbytes/time<<"\t\t"<<bidibytes/time<<std::endl;
-      std::cout<<GridLogMessage << std::setw(4) << lat<<"\t"<<Ls<<"\t"
-               <<std::setw(11) << bytes<< std::fixed << std::setprecision(1) << std::setw(7)
-               <<std::right<< xbytes/timestat.mean<<"  "<< xbytes*timestat.err/(timestat.mean*timestat.mean)<< " "
-               <<xbytes/timestat.max <<" "<< xbytes/timestat.min  
-               << "\t\t"<<std::setw(7)<< bidibytes/timestat.mean<< "  " << bidibytes*timestat.err/(timestat.mean*timestat.mean) << " "
-               << bidibytes/timestat.max << " " << bidibytes/timestat.min << std::endl;
- 
     }
   }    
 
 
 
+  Nloop=100;
   std::cout<<GridLogMessage << "===================================================================================================="<<std::endl;
-  std::cout<<GridLogMessage << "= Benchmarking threaded STENCIL halo exchange in "<<nmu<<" dimensions"<<std::endl;
+  std::cout<<GridLogMessage << "= Benchmarking sequential STENCIL halo exchange in "<<nmu<<" dimensions"<<std::endl;
   std::cout<<GridLogMessage << "===================================================================================================="<<std::endl;
-  header();
+  std::cout<<GridLogMessage << "  L  "<<"\t\t"<<" Ls  "<<"\t\t"<<"bytes"<<"\t\t"<<"MB/s uni"<<"\t\t"<<"MB/s bidi"<<std::endl;
 
-  for(int lat=4;lat<=maxlat;lat+=4){
+  for(int lat=4;lat<=maxlat;lat+=2){
-    for(int Ls=8;Ls<=8;Ls*=2){
+    for(int Ls=1;Ls<=16;Ls*=2){
 
       std::vector<int> latt_size  ({lat*mpi_layout[0],
       				    lat*mpi_layout[1],
@@ -461,9 +290,6 @@ int main (int argc, char ** argv)
       				    lat*mpi_layout[3]});
 
       GridCartesian     Grid(latt_size,simd_layout,mpi_layout);
-      RealD Nrank = Grid._Nprocessors;
-      RealD Nnode = Grid.NodeCount();
-      RealD ppn = Nrank/Nnode;
 
       std::vector<HalfSpinColourVectorD *> xbuf(8);
       std::vector<HalfSpinColourVectorD *> rbuf(8);
@@ -471,71 +297,65 @@ int main (int argc, char ** argv)
       for(int d=0;d<8;d++){
 	xbuf[d] = (HalfSpinColourVectorD *)Grid.ShmBufferMalloc(lat*lat*lat*Ls*sizeof(HalfSpinColourVectorD));
 	rbuf[d] = (HalfSpinColourVectorD *)Grid.ShmBufferMalloc(lat*lat*lat*Ls*sizeof(HalfSpinColourVectorD));
-	bzero((void *)xbuf[d],lat*lat*lat*Ls*sizeof(HalfSpinColourVectorD));
-	bzero((void *)rbuf[d],lat*lat*lat*Ls*sizeof(HalfSpinColourVectorD));
       }
 
       int ncomm;
       int bytes=lat*lat*lat*Ls*sizeof(HalfSpinColourVectorD);
-      double dbytes;
+
+      double start=usecond();
       for(int i=0;i<Nloop;i++){
-	double start=usecond();
 
 	std::vector<CartesianCommunicator::CommsRequest_t> requests;
-	dbytes=0;
+
 	ncomm=0;
-
+	for(int mu=0;mu<4;mu++){
-	parallel_for(int dir=0;dir<8;dir++){
+	
-
-	  double tbytes;
-	  int mu =dir % 4;
-
 	  if (mpi_layout[mu]>1 ) {
 	  
 	    ncomm++;
+	    int comm_proc=1;
 	    int xmit_to_rank;
 	    int recv_from_rank;
-	    if ( dir == mu ) { 
+	    
-	      int comm_proc=1;
+	    Grid.ShiftedRanks(mu,comm_proc,xmit_to_rank,recv_from_rank);
-	      Grid.ShiftedRanks(mu,comm_proc,xmit_to_rank,recv_from_rank);
+	    Grid.StencilSendToRecvFromBegin(requests,
-	    } else { 
+					    (void *)&xbuf[mu][0],
-	      int comm_proc = mpi_layout[mu]-1;
+					    xmit_to_rank,
-	      Grid.ShiftedRanks(mu,comm_proc,xmit_to_rank,recv_from_rank);
+					    (void *)&rbuf[mu][0],
-	    }
+					    recv_from_rank,
+					    bytes);
+	    //	    Grid.StencilSendToRecvFromComplete(requests);
+	    //	    requests.resize(0);
 
-	    tbytes= Grid.StencilSendToRecvFrom((void *)&xbuf[dir][0], xmit_to_rank,
+	    comm_proc = mpi_layout[mu]-1;
-					       (void *)&rbuf[dir][0], recv_from_rank, bytes,dir);
+	  
-
+	    Grid.ShiftedRanks(mu,comm_proc,xmit_to_rank,recv_from_rank);
-#pragma omp atomic
+	    Grid.StencilSendToRecvFromBegin(requests,
-	    dbytes+=tbytes;
+					    (void *)&xbuf[mu+4][0],
+					    xmit_to_rank,
+					    (void *)&rbuf[mu+4][0],
+					    recv_from_rank,
+					    bytes);
+	    Grid.StencilSendToRecvFromComplete(requests);
+	    requests.resize(0);
+	  
 	  }
 	}
 	Grid.Barrier();
-	double stop=usecond();
+
-	t_time[i] = stop-start; // microseconds
       }
+      double stop=usecond();
 
-      timestat.statistics(t_time);
+      double dbytes    = bytes;
+      double xbytes    = Nloop*dbytes*2.0*ncomm;
+      double rbytes    = xbytes;
+      double bidibytes = xbytes+rbytes;
 
-      dbytes=dbytes*ppn;
+      double time = stop-start; // microseconds
-      double xbytes    = dbytes*0.5;
-      double rbytes    = dbytes*0.5;
-      double bidibytes = dbytes;
 
-
+      std::cout<<GridLogMessage << lat<<"\t\t"<<Ls<<"\t\t"<<bytes<<"\t\t"<<xbytes/time<<"\t\t"<<bidibytes/time<<std::endl;
-      std::cout<<GridLogMessage << std::setw(4) << lat<<"\t"<<Ls<<"\t"
-               <<std::setw(11) << bytes<< std::fixed << std::setprecision(1) << std::setw(7)
-               <<std::right<< xbytes/timestat.mean<<"  "<< xbytes*timestat.err/(timestat.mean*timestat.mean)<< " "
-               <<xbytes/timestat.max <<" "<< xbytes/timestat.min  
-               << "\t\t"<<std::setw(7)<< bidibytes/timestat.mean<< "  " << bidibytes*timestat.err/(timestat.mean*timestat.mean) << " "
-               << bidibytes/timestat.max << " " << bidibytes/timestat.min << std::endl;
- 
     }
   }    
 
-  std::cout<<GridLogMessage << "===================================================================================================="<<std::endl;
-  std::cout<<GridLogMessage << "= All done; Bye Bye"<<std::endl;
-  std::cout<<GridLogMessage << "===================================================================================================="<<std::endl;
-
   Grid_finalize();
 }

benchmarks/Benchmark_dwf.cc

@@ -1,22 +1,28 @@
- /*************************************************************************************
+    /*************************************************************************************
+
     Grid physics library, www.github.com/paboyle/Grid 
+
     Source file: ./benchmarks/Benchmark_dwf.cc
+
     Copyright (C) 2015
 
-    Author: Peter Boyle <paboyle@ph.ed.ac.uk>
+Author: Peter Boyle <paboyle@ph.ed.ac.uk>
-    Author: paboyle <paboyle@ph.ed.ac.uk>
+Author: paboyle <paboyle@ph.ed.ac.uk>
 
     This program is free software; you can redistribute it and/or modify
     it under the terms of the GNU General Public License as published by
     the Free Software Foundation; either version 2 of the License, or
     (at your option) any later version.
+
     This program is distributed in the hope that it will be useful,
     but WITHOUT ANY WARRANTY; without even the implied warranty of
     MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
     GNU General Public License for more details.
+
     You should have received a copy of the GNU General Public License along
     with this program; if not, write to the Free Software Foundation, Inc.,
     51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
+
     See the full license in the file "LICENSE" in the top level distribution directory
     *************************************************************************************/
     /*  END LEGAL */
@@ -42,22 +48,16 @@ typedef WilsonFermion5D<DomainWallVec5dImplR> WilsonFermion5DR;
 typedef WilsonFermion5D<DomainWallVec5dImplF> WilsonFermion5DF;
 typedef WilsonFermion5D<DomainWallVec5dImplD> WilsonFermion5DD;
 
+
 int main (int argc, char ** argv)
 {
   Grid_init(&argc,&argv);
 
-
   int threads = GridThread::GetThreads();
   std::cout<<GridLogMessage << "Grid is setup to use "<<threads<<" threads"<<std::endl;
 
   std::vector<int> latt4 = GridDefaultLatt();
-  int Ls=16;
+  const int Ls=8;
-  for(int i=0;i<argc;i++)
-    if(std::string(argv[i]) == "-Ls"){
-      std::stringstream ss(argv[i+1]); ss >> Ls;
-    }
-
-
   GridCartesian         * UGrid   = SpaceTimeGrid::makeFourDimGrid(GridDefaultLatt(), GridDefaultSimd(Nd,vComplex::Nsimd()),GridDefaultMpi());
   GridRedBlackCartesian * UrbGrid = SpaceTimeGrid::makeFourDimRedBlackGrid(UGrid);
   GridCartesian         * FGrid   = SpaceTimeGrid::makeFiveDimGrid(Ls,UGrid);
@@ -71,66 +71,35 @@ int main (int argc, char ** argv)
 
   std::vector<int> seeds4({1,2,3,4});
   std::vector<int> seeds5({5,6,7,8});
-  
+
-  std::cout << GridLogMessage << "Initialising 4d RNG" << std::endl;
   GridParallelRNG          RNG4(UGrid);  RNG4.SeedFixedIntegers(seeds4);
-  std::cout << GridLogMessage << "Initialising 5d RNG" << std::endl;
   GridParallelRNG          RNG5(FGrid);  RNG5.SeedFixedIntegers(seeds5);
-  std::cout << GridLogMessage << "Initialised RNGs" << std::endl;
 
   LatticeFermion src   (FGrid); random(RNG5,src);
-#if 0
-  src = zero;
-  {
-    std::vector<int> origin({0,0,0,latt4[2]-1,0});
-    SpinColourVectorF tmp;
-    tmp=zero;
-    tmp()(0)(0)=Complex(-2.0,0.0);
-    std::cout << " source site 0 " << tmp<<std::endl;
-    pokeSite(tmp,src,origin);
-  }
-#else
-  RealD N2 = 1.0/::sqrt(norm2(src));
-  src = src*N2;
-#endif
-
-
   LatticeFermion result(FGrid); result=zero;
   LatticeFermion    ref(FGrid);    ref=zero;
   LatticeFermion    tmp(FGrid);
   LatticeFermion    err(FGrid);
 
-  std::cout << GridLogMessage << "Drawing gauge field" << std::endl;
   LatticeGaugeField Umu(UGrid); 
-  SU3::HotConfiguration(RNG4,Umu); 
+  random(RNG4,Umu);
-  std::cout << GridLogMessage << "Random gauge initialised " << std::endl;
-#if 0
-  Umu=1.0;
-  for(int mu=0;mu<Nd;mu++){
-    LatticeColourMatrix ttmp(UGrid);
-    ttmp = PeekIndex<LorentzIndex>(Umu,mu);
-    //    if (mu !=2 ) ttmp = 0;
-    //    ttmp = ttmp* pow(10.0,mu);
-    PokeIndex<LorentzIndex>(Umu,ttmp,mu);
-  }
-  std::cout << GridLogMessage << "Forced to diagonal " << std::endl;
-#endif
 
-  ////////////////////////////////////
-  // Naive wilson implementation
-  ////////////////////////////////////
-  // replicate across fifth dimension
   LatticeGaugeField Umu5d(FGrid); 
-  std::vector<LatticeColourMatrix> U(4,FGrid);
+
+  // replicate across fifth dimension
   for(int ss=0;ss<Umu._grid->oSites();ss++){
     for(int s=0;s<Ls;s++){
       Umu5d._odata[Ls*ss+s] = Umu._odata[ss];
     }
   }
+
+  ////////////////////////////////////
+  // Naive wilson implementation
+  ////////////////////////////////////
+  std::vector<LatticeColourMatrix> U(4,FGrid);
   for(int mu=0;mu<Nd;mu++){
     U[mu] = PeekIndex<LorentzIndex>(Umu5d,mu);
   }
-  std::cout << GridLogMessage << "Setting up Cshift based reference " << std::endl;
 
   if (1)
   {
@@ -151,7 +120,8 @@ int main (int argc, char ** argv)
   RealD M5  =1.8;
 
   RealD NP = UGrid->_Nprocessors;
-  RealD NN = UGrid->NodeCount();
+
+  DomainWallFermionR Dw(Umu,*FGrid,*FrbGrid,*UGrid,*UrbGrid,mass,M5);
 
   std::cout << GridLogMessage<< "*****************************************************************" <<std::endl;
   std::cout << GridLogMessage<< "* Kernel options --dslash-generic, --dslash-unroll, --dslash-asm" <<std::endl;
@@ -161,22 +131,15 @@ int main (int argc, char ** argv)
   std::cout << GridLogMessage<< "* Vectorising space-time by "<<vComplex::Nsimd()<<std::endl;
   if ( sizeof(Real)==4 )   std::cout << GridLogMessage<< "* SINGLE precision "<<std::endl;
   if ( sizeof(Real)==8 )   std::cout << GridLogMessage<< "* DOUBLE precision "<<std::endl;
-#ifdef GRID_OMP
-  if ( WilsonKernelsStatic::Comms == WilsonKernelsStatic::CommsAndCompute ) std::cout << GridLogMessage<< "* Using Overlapped Comms/Compute" <<std::endl;
-  if ( WilsonKernelsStatic::Comms == WilsonKernelsStatic::CommsThenCompute) std::cout << GridLogMessage<< "* Using sequential comms compute" <<std::endl;
-#endif
   if ( WilsonKernelsStatic::Opt == WilsonKernelsStatic::OptGeneric   ) std::cout << GridLogMessage<< "* Using GENERIC Nc WilsonKernels" <<std::endl;
   if ( WilsonKernelsStatic::Opt == WilsonKernelsStatic::OptHandUnroll) std::cout << GridLogMessage<< "* Using Nc=3       WilsonKernels" <<std::endl;
   if ( WilsonKernelsStatic::Opt == WilsonKernelsStatic::OptInlineAsm ) std::cout << GridLogMessage<< "* Using Asm Nc=3   WilsonKernels" <<std::endl;
   std::cout << GridLogMessage<< "*****************************************************************" <<std::endl;
 
-  DomainWallFermionR Dw(Umu,*FGrid,*FrbGrid,*UGrid,*UrbGrid,mass,M5);
+  int ncall =100;
-  int ncall =500;
   if (1) {
     FGrid->Barrier();
     Dw.ZeroCounters();
-    Dw.Dhop(src,result,0);
-    std::cout<<GridLogMessage<<"Called warmup"<<std::endl;
     double t0=usecond();
     for(int i=0;i<ncall;i++){
       __SSC_START;
@@ -190,55 +153,16 @@ int main (int argc, char ** argv)
     double flops=1344*volume*ncall;
 
     std::cout<<GridLogMessage << "Called Dw "<<ncall<<" times in "<<t1-t0<<" us"<<std::endl;
-    //    std::cout<<GridLogMessage << "norm result "<< norm2(result)<<std::endl;
+    std::cout<<GridLogMessage << "norm result "<< norm2(result)<<std::endl;
-    //    std::cout<<GridLogMessage << "norm ref    "<< norm2(ref)<<std::endl;
+    std::cout<<GridLogMessage << "norm ref    "<< norm2(ref)<<std::endl;
     std::cout<<GridLogMessage << "mflop/s =   "<< flops/(t1-t0)<<std::endl;
     std::cout<<GridLogMessage << "mflop/s per rank =  "<< flops/(t1-t0)/NP<<std::endl;
-    std::cout<<GridLogMessage << "mflop/s per node =  "<< flops/(t1-t0)/NN<<std::endl;
     err = ref-result; 
     std::cout<<GridLogMessage << "norm diff   "<< norm2(err)<<std::endl;
-
-    /*
-    if(( norm2(err)>1.0e-4) ) { 
-      std::cout << "RESULT\n " << result<<std::endl;
-      std::cout << "REF   \n " << ref   <<std::endl;
-      std::cout << "ERR   \n " << err   <<std::endl;
-      FGrid->Barrier();
-      exit(-1);
-    }
-    */
     assert (norm2(err)< 1.0e-4 );
     Dw.Report();
   }
 
-  DomainWallFermionRL DwH(Umu,*FGrid,*FrbGrid,*UGrid,*UrbGrid,mass,M5);
-  if (1) {
-    FGrid->Barrier();
-    DwH.ZeroCounters();
-    DwH.Dhop(src,result,0);
-    double t0=usecond();
-    for(int i=0;i<ncall;i++){
-      __SSC_START;
-      DwH.Dhop(src,result,0);
-      __SSC_STOP;
-    }
-    double t1=usecond();
-    FGrid->Barrier();
-    
-    double volume=Ls;  for(int mu=0;mu<Nd;mu++) volume=volume*latt4[mu];
-    double flops=1344*volume*ncall;
-
-    std::cout<<GridLogMessage << "Called half prec comms Dw "<<ncall<<" times in "<<t1-t0<<" us"<<std::endl;
-    std::cout<<GridLogMessage << "mflop/s =   "<< flops/(t1-t0)<<std::endl;
-    std::cout<<GridLogMessage << "mflop/s per rank =  "<< flops/(t1-t0)/NP<<std::endl;
-    std::cout<<GridLogMessage << "mflop/s per node =  "<< flops/(t1-t0)/NN<<std::endl;
-    err = ref-result; 
-    std::cout<<GridLogMessage << "norm diff   "<< norm2(err)<<std::endl;
-
-    assert (norm2(err)< 1.0e-3 );
-    DwH.Report();
-  }
-
   if (1)
   {
 
@@ -247,10 +171,6 @@ int main (int argc, char ** argv)
     std::cout << GridLogMessage<< "* Vectorising fifth dimension by "<<vComplex::Nsimd()<<std::endl;
     if ( sizeof(Real)==4 )   std::cout << GridLogMessage<< "* SINGLE precision "<<std::endl;
     if ( sizeof(Real)==8 )   std::cout << GridLogMessage<< "* DOUBLE precision "<<std::endl;
-#ifdef GRID_OMP
-  if ( WilsonKernelsStatic::Comms == WilsonKernelsStatic::CommsAndCompute ) std::cout << GridLogMessage<< "* Using Overlapped Comms/Compute" <<std::endl;
-  if ( WilsonKernelsStatic::Comms == WilsonKernelsStatic::CommsThenCompute) std::cout << GridLogMessage<< "* Using sequential comms compute" <<std::endl;
-#endif
     if ( WilsonKernelsStatic::Opt == WilsonKernelsStatic::OptGeneric   ) std::cout << GridLogMessage<< "* Using GENERIC Nc WilsonKernels" <<std::endl;
     if ( WilsonKernelsStatic::Opt == WilsonKernelsStatic::OptHandUnroll) std::cout << GridLogMessage<< "* Using Nc=3       WilsonKernels" <<std::endl;
     if ( WilsonKernelsStatic::Opt == WilsonKernelsStatic::OptInlineAsm ) std::cout << GridLogMessage<< "* Using Asm Nc=3   WilsonKernels" <<std::endl;
@@ -262,13 +182,21 @@ int main (int argc, char ** argv)
     LatticeFermion sresult(sFGrid);
 
     WilsonFermion5DR sDw(Umu,*sFGrid,*sFrbGrid,*sUGrid,*sUrbGrid,M5);
-
+  
-    localConvert(src,ssrc);
+    for(int x=0;x<latt4[0];x++){
+    for(int y=0;y<latt4[1];y++){
+    for(int z=0;z<latt4[2];z++){
+    for(int t=0;t<latt4[3];t++){
+    for(int s=0;s<Ls;s++){
+      std::vector<int> site({s,x,y,z,t});
+      SpinColourVector tmp;
+      peekSite(tmp,src,site);
+      pokeSite(tmp,ssrc,site);
+    }}}}}
     std::cout<<GridLogMessage<< "src norms "<< norm2(src)<<" " <<norm2(ssrc)<<std::endl;
     FGrid->Barrier();
-    sDw.Dhop(ssrc,sresult,0);
-    sDw.ZeroCounters();
     double t0=usecond();
+    sDw.ZeroCounters();
     for(int i=0;i<ncall;i++){
       __SSC_START;
       sDw.Dhop(ssrc,sresult,0);
@@ -282,53 +210,46 @@ int main (int argc, char ** argv)
     std::cout<<GridLogMessage << "Called Dw s_inner "<<ncall<<" times in "<<t1-t0<<" us"<<std::endl;
     std::cout<<GridLogMessage << "mflop/s =   "<< flops/(t1-t0)<<std::endl;
     std::cout<<GridLogMessage << "mflop/s per rank =  "<< flops/(t1-t0)/NP<<std::endl;
-    std::cout<<GridLogMessage << "mflop/s per node =  "<< flops/(t1-t0)/NN<<std::endl;
-    //    std::cout<<GridLogMessage<< "res norms "<< norm2(result)<<" " <<norm2(sresult)<<std::endl;
     sDw.Report();
+  
+    if(0){
+      for(int i=0;i< PerformanceCounter::NumTypes(); i++ ){
+	sDw.Dhop(ssrc,sresult,0);
+	PerformanceCounter Counter(i);
+	Counter.Start();
+	sDw.Dhop(ssrc,sresult,0);
+	Counter.Stop();
+	Counter.Report();
+      }
+    }
+
+    std::cout<<GridLogMessage<< "res norms "<< norm2(result)<<" " <<norm2(sresult)<<std::endl;
+
     RealD sum=0;
+    for(int x=0;x<latt4[0];x++){
+    for(int y=0;y<latt4[1];y++){
+    for(int z=0;z<latt4[2];z++){
+    for(int t=0;t<latt4[3];t++){
+    for(int s=0;s<Ls;s++){
+      std::vector<int> site({s,x,y,z,t});
+      SpinColourVector normal, simd;
+      peekSite(normal,result,site);
+      peekSite(simd,sresult,site);
+      sum=sum+norm2(normal-simd);
+      if (norm2(normal-simd) > 1.0e-6 ) {
+	std::cout << "site "<<x<<","<<y<<","<<z<<","<<t<<","<<s<<" "<<norm2(normal-simd)<<std::endl;
+	std::cout << "site "<<x<<","<<y<<","<<z<<","<<t<<","<<s<<" normal "<<normal<<std::endl;
+	std::cout << "site "<<x<<","<<y<<","<<z<<","<<t<<","<<s<<" simd   "<<simd<<std::endl;
+      }
+    }}}}}
+    std::cout<<GridLogMessage<<" difference between normal and simd is "<<sum<<std::endl;
+    assert (sum< 1.0e-4 );
 
-    err=zero;
-    localConvert(sresult,err);
-    err = err - ref;
-    sum = norm2(err);
-    std::cout<<GridLogMessage<<" difference between normal ref and simd is "<<sum<<std::endl;
-    if(sum > 1.0e-4 ){
-      std::cout<< "sD REF\n " <<ref << std::endl;
-      std::cout<< "sD ERR   \n " <<err  <<std::endl;
-    }
-    //    assert(sum < 1.0e-4);
 
-    err=zero;
+    if (1) {
-    localConvert(sresult,err);
-    err = err - result;
-    sum = norm2(err);
-    std::cout<<GridLogMessage<<" difference between normal result and simd is "<<sum<<std::endl;
-    if(sum > 1.0e-4 ){
-      std::cout<< "sD REF\n " <<result << std::endl;
-      std::cout<< "sD ERR   \n " << err  <<std::endl;
-    }
-    assert(sum < 1.0e-4);
-
-    
-    if(1){
-      std::cout << GridLogMessage<< "*********************************************************" <<std::endl;
-      std::cout << GridLogMessage<< "* Benchmarking WilsonFermion5D<DomainWallVec5dImplR>::DhopEO "<<std::endl;
-      std::cout << GridLogMessage<< "* Vectorising fifth dimension by "<<vComplex::Nsimd()<<std::endl;
-      if ( sizeof(Real)==4 )   std::cout << GridLogMessage<< "* SINGLE precision "<<std::endl;
-      if ( sizeof(Real)==8 )   std::cout << GridLogMessage<< "* DOUBLE precision "<<std::endl;
-#ifdef GRID_OMP
-  if ( WilsonKernelsStatic::Comms == WilsonKernelsStatic::CommsAndCompute ) std::cout << GridLogMessage<< "* Using Overlapped Comms/Compute" <<std::endl;
-  if ( WilsonKernelsStatic::Comms == WilsonKernelsStatic::CommsThenCompute) std::cout << GridLogMessage<< "* Using sequential comms compute" <<std::endl;
-#endif
-      if ( WilsonKernelsStatic::Opt == WilsonKernelsStatic::OptGeneric   ) 
-	std::cout << GridLogMessage<< "* Using GENERIC Nc WilsonKernels" <<std::endl;
-      if ( WilsonKernelsStatic::Opt == WilsonKernelsStatic::OptHandUnroll) 
-	std::cout << GridLogMessage<< "* Using Nc=3       WilsonKernels" <<std::endl;
-      if ( WilsonKernelsStatic::Opt == WilsonKernelsStatic::OptInlineAsm ) 
-	std::cout << GridLogMessage<< "* Using Asm Nc=3   WilsonKernels" <<std::endl;
-      std::cout << GridLogMessage<< "*********************************************************" <<std::endl;
 
       LatticeFermion sr_eo(sFGrid);
+
       LatticeFermion ssrc_e (sFrbGrid);
       LatticeFermion ssrc_o (sFrbGrid);
       LatticeFermion sr_e   (sFrbGrid);
@@ -336,30 +257,39 @@ int main (int argc, char ** argv)
 
       pickCheckerboard(Even,ssrc_e,ssrc);
       pickCheckerboard(Odd,ssrc_o,ssrc);
-      //      setCheckerboard(sr_eo,ssrc_o);
+
-      //      setCheckerboard(sr_eo,ssrc_e);
+      setCheckerboard(sr_eo,ssrc_o);
+      setCheckerboard(sr_eo,ssrc_e);
 
       sr_e = zero;
       sr_o = zero;
 
+      std::cout << GridLogMessage<< "*********************************************************" <<std::endl;
+      std::cout << GridLogMessage<< "* Benchmarking WilsonFermion5D<DomainWallVec5dImplR>::DhopEO "<<std::endl;
+      std::cout << GridLogMessage<< "* Vectorising fifth dimension by "<<vComplex::Nsimd()<<std::endl;
+      if ( sizeof(Real)==4 )   std::cout << GridLogMessage<< "* SINGLE precision "<<std::endl;
+      if ( sizeof(Real)==8 )   std::cout << GridLogMessage<< "* DOUBLE precision "<<std::endl;
+      if ( WilsonKernelsStatic::Opt == WilsonKernelsStatic::OptGeneric   ) std::cout << GridLogMessage<< "* Using GENERIC Nc WilsonKernels" <<std::endl;
+      if ( WilsonKernelsStatic::Opt == WilsonKernelsStatic::OptHandUnroll) std::cout << GridLogMessage<< "* Using Nc=3       WilsonKernels" <<std::endl;
+      if ( WilsonKernelsStatic::Opt == WilsonKernelsStatic::OptInlineAsm ) std::cout << GridLogMessage<< "* Using Asm Nc=3   WilsonKernels" <<std::endl;
+      std::cout << GridLogMessage<< "*********************************************************" <<std::endl;
+
       FGrid->Barrier();
-      sDw.DhopEO(ssrc_o, sr_e, DaggerNo);
       sDw.ZeroCounters();
-      //      sDw.stat.init("DhopEO");
+      sDw.stat.init("DhopEO");
       double t0=usecond();
       for (int i = 0; i < ncall; i++) {
         sDw.DhopEO(ssrc_o, sr_e, DaggerNo);
       }
       double t1=usecond();
       FGrid->Barrier();
-      //      sDw.stat.print();
+      sDw.stat.print();
 
       double volume=Ls;  for(int mu=0;mu<Nd;mu++) volume=volume*latt4[mu];
       double flops=(1344.0*volume*ncall)/2;
 
       std::cout<<GridLogMessage << "sDeo mflop/s =   "<< flops/(t1-t0)<<std::endl;
       std::cout<<GridLogMessage << "sDeo mflop/s per rank   "<< flops/(t1-t0)/NP<<std::endl;
-      std::cout<<GridLogMessage << "sDeo mflop/s per node   "<< flops/(t1-t0)/NN<<std::endl;
       sDw.Report();
 
       sDw.DhopEO(ssrc_o,sr_e,DaggerNo);
@@ -368,43 +298,24 @@ int main (int argc, char ** argv)
 
       pickCheckerboard(Even,ssrc_e,sresult);
       pickCheckerboard(Odd ,ssrc_o,sresult);
-
       ssrc_e = ssrc_e - sr_e;
       RealD error = norm2(ssrc_e);
-      std::cout<<GridLogMessage << "sE norm diff   "<< norm2(ssrc_e)<< "  vec nrm"<<norm2(sr_e) <<std::endl;
 
+      std::cout<<GridLogMessage << "sE norm diff   "<< norm2(ssrc_e)<< "  vec nrm"<<norm2(sr_e) <<std::endl;
       ssrc_o = ssrc_o - sr_o;
+
       error+= norm2(ssrc_o);
       std::cout<<GridLogMessage << "sO norm diff   "<< norm2(ssrc_o)<< "  vec nrm"<<norm2(sr_o) <<std::endl;
-
+      if(error>1.0e-4) { 
-      if(( error>1.0e-4) ) { 
 	setCheckerboard(ssrc,ssrc_o);
 	setCheckerboard(ssrc,ssrc_e);
-	std::cout<< "DIFF\n " <<ssrc << std::endl;
+	std::cout<< ssrc << std::endl;
-	setCheckerboard(ssrc,sr_o);
-	setCheckerboard(ssrc,sr_e);
-	std::cout<< "CBRESULT\n " <<ssrc << std::endl;
-	std::cout<< "RESULT\n " <<sresult<< std::endl;
       }
-      assert(error<1.0e-4);
     }
 
-  if(0){
-    std::cout << "Single cache warm call to sDw.Dhop " <<std::endl;
-    for(int i=0;i< PerformanceCounter::NumTypes(); i++ ){
-      sDw.Dhop(ssrc,sresult,0);
-      PerformanceCounter Counter(i);
-      Counter.Start();
-      sDw.Dhop(ssrc,sresult,0);
-      Counter.Stop();
-      Counter.Report();
-    }
-  }
 
   }
 
-
-
   if (1)
   { // Naive wilson dag implementation
     ref = zero;
@@ -413,30 +324,25 @@ int main (int argc, char ** argv)
       //    ref =  src - Gamma(Gamma::Algebra::GammaX)* src ; // 1+gamma_x
       tmp = U[mu]*Cshift(src,mu+1,1);
       for(int i=0;i<ref._odata.size();i++){
-	ref._odata[i]+= tmp._odata[i] + Gamma(Gmu[mu])*tmp._odata[i]; ;
+  ref._odata[i]+= tmp._odata[i] + Gamma(Gmu[mu])*tmp._odata[i]; ;
       }
 
       tmp =adj(U[mu])*src;
       tmp =Cshift(tmp,mu+1,-1);
       for(int i=0;i<ref._odata.size();i++){
-	ref._odata[i]+= tmp._odata[i] - Gamma(Gmu[mu])*tmp._odata[i]; ;
+  ref._odata[i]+= tmp._odata[i] - Gamma(Gmu[mu])*tmp._odata[i]; ;
       }
     }
     ref = -0.5*ref;
   }
-  //  dump=1;
   Dw.Dhop(src,result,1);
   std::cout << GridLogMessage << "Compare to naive wilson implementation Dag to verify correctness" << std::endl;
   std::cout<<GridLogMessage << "Called DwDag"<<std::endl;
-  std::cout<<GridLogMessage << "norm dag result "<< norm2(result)<<std::endl;
+  std::cout<<GridLogMessage << "norm result "<< norm2(result)<<std::endl;
-  std::cout<<GridLogMessage << "norm dag ref    "<< norm2(ref)<<std::endl;
+  std::cout<<GridLogMessage << "norm ref    "<< norm2(ref)<<std::endl;
   err = ref-result; 
-  std::cout<<GridLogMessage << "norm dag diff   "<< norm2(err)<<std::endl;
+  std::cout<<GridLogMessage << "norm diff   "<< norm2(err)<<std::endl;
-  if((norm2(err)>1.0e-4)){
+  assert(norm2(err)<1.0e-4);
-	std::cout<< "DAG RESULT\n "  <<ref     << std::endl;
-	std::cout<< "DAG sRESULT\n " <<result  << std::endl;
-	std::cout<< "DAG ERR   \n "  << err    <<std::endl;
-  }
   LatticeFermion src_e (FrbGrid);
   LatticeFermion src_o (FrbGrid);
   LatticeFermion r_e   (FrbGrid);
@@ -444,24 +350,18 @@ int main (int argc, char ** argv)
   LatticeFermion r_eo  (FGrid);
 
 
-  std::cout<<GridLogMessage << "Calling Deo and Doe and //assert Deo+Doe == Dunprec"<<std::endl;
+  std::cout<<GridLogMessage << "Calling Deo and Doe and assert Deo+Doe == Dunprec"<<std::endl;
   pickCheckerboard(Even,src_e,src);
   pickCheckerboard(Odd,src_o,src);
 
   std::cout<<GridLogMessage << "src_e"<<norm2(src_e)<<std::endl;
   std::cout<<GridLogMessage << "src_o"<<norm2(src_o)<<std::endl;
 
-
-  // S-direction is INNERMOST and takes no part in the parity.
   std::cout << GridLogMessage<< "*********************************************************" <<std::endl;
   std::cout << GridLogMessage<< "* Benchmarking DomainWallFermionR::DhopEO                "<<std::endl;
   std::cout << GridLogMessage<< "* Vectorising space-time by "<<vComplex::Nsimd()<<std::endl;
   if ( sizeof(Real)==4 )   std::cout << GridLogMessage<< "* SINGLE precision "<<std::endl;
   if ( sizeof(Real)==8 )   std::cout << GridLogMessage<< "* DOUBLE precision "<<std::endl;
-#ifdef GRID_OMP
-  if ( WilsonKernelsStatic::Comms == WilsonKernelsStatic::CommsAndCompute ) std::cout << GridLogMessage<< "* Using Overlapped Comms/Compute" <<std::endl;
-  if ( WilsonKernelsStatic::Comms == WilsonKernelsStatic::CommsThenCompute) std::cout << GridLogMessage<< "* Using sequential comms compute" <<std::endl;
-#endif
   if ( WilsonKernelsStatic::Opt == WilsonKernelsStatic::OptGeneric   ) std::cout << GridLogMessage<< "* Using GENERIC Nc WilsonKernels" <<std::endl;
   if ( WilsonKernelsStatic::Opt == WilsonKernelsStatic::OptHandUnroll) std::cout << GridLogMessage<< "* Using Nc=3       WilsonKernels" <<std::endl;
   if ( WilsonKernelsStatic::Opt == WilsonKernelsStatic::OptInlineAsm ) std::cout << GridLogMessage<< "* Using Asm Nc=3   WilsonKernels" <<std::endl;
@@ -469,7 +369,6 @@ int main (int argc, char ** argv)
   {
     Dw.ZeroCounters();
     FGrid->Barrier();
-    Dw.DhopEO(src_o,r_e,DaggerNo);
     double t0=usecond();
     for(int i=0;i<ncall;i++){
       Dw.DhopEO(src_o,r_e,DaggerNo);
@@ -482,7 +381,6 @@ int main (int argc, char ** argv)
 
     std::cout<<GridLogMessage << "Deo mflop/s =   "<< flops/(t1-t0)<<std::endl;
     std::cout<<GridLogMessage << "Deo mflop/s per rank   "<< flops/(t1-t0)/NP<<std::endl;
-    std::cout<<GridLogMessage << "Deo mflop/s per node   "<< flops/(t1-t0)/NN<<std::endl;
     Dw.Report();
   }
   Dw.DhopEO(src_o,r_e,DaggerNo);
@@ -498,20 +396,14 @@ int main (int argc, char ** argv)
 
   err = r_eo-result; 
   std::cout<<GridLogMessage << "norm diff   "<< norm2(err)<<std::endl;
-  if((norm2(err)>1.0e-4)){
+  assert(norm2(err)<1.0e-4);
-	std::cout<< "Deo RESULT\n " <<r_eo << std::endl;
-	std::cout<< "Deo REF\n " <<result  << std::endl;
-	std::cout<< "Deo ERR   \n " << err <<std::endl;
-  }
 
   pickCheckerboard(Even,src_e,err);
   pickCheckerboard(Odd,src_o,err);
   std::cout<<GridLogMessage << "norm diff even  "<< norm2(src_e)<<std::endl;
   std::cout<<GridLogMessage << "norm diff odd   "<< norm2(src_o)<<std::endl;
-
   assert(norm2(src_e)<1.0e-4);
   assert(norm2(src_o)<1.0e-4);
-  Grid_finalize();
-  exit(0);
-}
 
+  Grid_finalize();
+}

benchmarks/Benchmark_gparity.cc

@@ -1,190 +0,0 @@
-#include <Grid/Grid.h>
-#include <sstream>
-using namespace std;
-using namespace Grid;
-using namespace Grid::QCD;
-
-template<class d>
-struct scal {
-  d internal;
-};
-
-  Gamma::Algebra Gmu [] = {
-    Gamma::Algebra::GammaX,
-    Gamma::Algebra::GammaY,
-    Gamma::Algebra::GammaZ,
-    Gamma::Algebra::GammaT
-  };
-
-typedef typename GparityDomainWallFermionF::FermionField GparityLatticeFermionF;
-typedef typename GparityDomainWallFermionD::FermionField GparityLatticeFermionD;
-
-
-
-int main (int argc, char ** argv)
-{
-  Grid_init(&argc,&argv);
-
-  int Ls=16;
-  for(int i=0;i<argc;i++)
-    if(std::string(argv[i]) == "-Ls"){
-      std::stringstream ss(argv[i+1]); ss >> Ls;
-    }
-
-
-  int threads = GridThread::GetThreads();
-  std::cout<<GridLogMessage << "Grid is setup to use "<<threads<<" threads"<<std::endl;
-  std::cout<<GridLogMessage << "Ls = " << Ls << std::endl;
-
-  std::vector<int> latt4 = GridDefaultLatt();
-
-  GridCartesian         * UGrid   = SpaceTimeGrid::makeFourDimGrid(GridDefaultLatt(), GridDefaultSimd(Nd,vComplexF::Nsimd()),GridDefaultMpi());
-  GridRedBlackCartesian * UrbGrid = SpaceTimeGrid::makeFourDimRedBlackGrid(UGrid);
-  GridCartesian         * FGrid   = SpaceTimeGrid::makeFiveDimGrid(Ls,UGrid);
-  GridRedBlackCartesian * FrbGrid = SpaceTimeGrid::makeFiveDimRedBlackGrid(Ls,UGrid);
-
-  std::vector<int> seeds4({1,2,3,4});
-  std::vector<int> seeds5({5,6,7,8});
-  
-  std::cout << GridLogMessage << "Initialising 4d RNG" << std::endl;
-  GridParallelRNG          RNG4(UGrid);  RNG4.SeedFixedIntegers(seeds4);
-  std::cout << GridLogMessage << "Initialising 5d RNG" << std::endl;
-  GridParallelRNG          RNG5(FGrid);  RNG5.SeedFixedIntegers(seeds5);
-  std::cout << GridLogMessage << "Initialised RNGs" << std::endl;
-
-  GparityLatticeFermionF src   (FGrid); random(RNG5,src);
-  RealD N2 = 1.0/::sqrt(norm2(src));
-  src = src*N2;
-
-  GparityLatticeFermionF result(FGrid); result=zero;
-  GparityLatticeFermionF    ref(FGrid);    ref=zero;
-  GparityLatticeFermionF    tmp(FGrid);
-  GparityLatticeFermionF    err(FGrid);
-
-  std::cout << GridLogMessage << "Drawing gauge field" << std::endl;
-  LatticeGaugeFieldF Umu(UGrid); 
-  SU3::HotConfiguration(RNG4,Umu); 
-  std::cout << GridLogMessage << "Random gauge initialised " << std::endl;
-
-  RealD mass=0.1;
-  RealD M5  =1.8;
-
-  RealD NP = UGrid->_Nprocessors;
-  RealD NN = UGrid->NodeCount();
-
-  std::cout << GridLogMessage<< "*****************************************************************" <<std::endl;
-  std::cout << GridLogMessage<< "* Kernel options --dslash-generic, --dslash-unroll, --dslash-asm" <<std::endl;
-  std::cout << GridLogMessage<< "*****************************************************************" <<std::endl;
-  std::cout << GridLogMessage<< "*****************************************************************" <<std::endl;
-  std::cout << GridLogMessage<< "* Benchmarking DomainWallFermion::Dhop                  "<<std::endl;
-  std::cout << GridLogMessage<< "* Vectorising space-time by "<<vComplexF::Nsimd()<<std::endl;
-#ifdef GRID_OMP
-  if ( WilsonKernelsStatic::Comms == WilsonKernelsStatic::CommsAndCompute ) std::cout << GridLogMessage<< "* Using Overlapped Comms/Compute" <<std::endl;
-  if ( WilsonKernelsStatic::Comms == WilsonKernelsStatic::CommsThenCompute) std::cout << GridLogMessage<< "* Using sequential comms compute" <<std::endl;
-#endif
-  if ( WilsonKernelsStatic::Opt == WilsonKernelsStatic::OptGeneric   ) std::cout << GridLogMessage<< "* Using GENERIC Nc WilsonKernels" <<std::endl;
-  if ( WilsonKernelsStatic::Opt == WilsonKernelsStatic::OptHandUnroll) std::cout << GridLogMessage<< "* Using Nc=3       WilsonKernels" <<std::endl;
-  if ( WilsonKernelsStatic::Opt == WilsonKernelsStatic::OptInlineAsm ) std::cout << GridLogMessage<< "* Using Asm Nc=3   WilsonKernels" <<std::endl;
-  std::cout << GridLogMessage<< "*****************************************************************" <<std::endl;
-
-
-
-  std::cout << GridLogMessage<< "* SINGLE/SINGLE"<<std::endl;
-  GparityDomainWallFermionF Dw(Umu,*FGrid,*FrbGrid,*UGrid,*UrbGrid,mass,M5);
-  int ncall =1000;
-  if (1) {
-    FGrid->Barrier();
-    Dw.ZeroCounters();
-    Dw.Dhop(src,result,0);
-    std::cout<<GridLogMessage<<"Called warmup"<<std::endl;
-    double t0=usecond();
-    for(int i=0;i<ncall;i++){
-      __SSC_START;
-      Dw.Dhop(src,result,0);
-      __SSC_STOP;
-    }
-    double t1=usecond();
-    FGrid->Barrier();
-    
-    double volume=Ls;  for(int mu=0;mu<Nd;mu++) volume=volume*latt4[mu];
-    double flops=2*1344*volume*ncall;
-
-    std::cout<<GridLogMessage << "Called Dw "<<ncall<<" times in "<<t1-t0<<" us"<<std::endl;
-    //    std::cout<<GridLogMessage << "norm result "<< norm2(result)<<std::endl;
-    //    std::cout<<GridLogMessage << "norm ref    "<< norm2(ref)<<std::endl;
-    std::cout<<GridLogMessage << "mflop/s =   "<< flops/(t1-t0)<<std::endl;
-    std::cout<<GridLogMessage << "mflop/s per rank =  "<< flops/(t1-t0)/NP<<std::endl;
-    std::cout<<GridLogMessage << "mflop/s per node =  "<< flops/(t1-t0)/NN<<std::endl;
-    Dw.Report();
-  }
-
-  std::cout << GridLogMessage<< "* SINGLE/HALF"<<std::endl;
-  GparityDomainWallFermionFH DwH(Umu,*FGrid,*FrbGrid,*UGrid,*UrbGrid,mass,M5);
-  if (1) {
-    FGrid->Barrier();
-    DwH.ZeroCounters();
-    DwH.Dhop(src,result,0);
-    double t0=usecond();
-    for(int i=0;i<ncall;i++){
-      __SSC_START;
-      DwH.Dhop(src,result,0);
-      __SSC_STOP;
-    }
-    double t1=usecond();
-    FGrid->Barrier();
-    
-    double volume=Ls;  for(int mu=0;mu<Nd;mu++) volume=volume*latt4[mu];
-    double flops=2*1344*volume*ncall;
-
-    std::cout<<GridLogMessage << "Called half prec comms Dw "<<ncall<<" times in "<<t1-t0<<" us"<<std::endl;
-    std::cout<<GridLogMessage << "mflop/s =   "<< flops/(t1-t0)<<std::endl;
-    std::cout<<GridLogMessage << "mflop/s per rank =  "<< flops/(t1-t0)/NP<<std::endl;
-    std::cout<<GridLogMessage << "mflop/s per node =  "<< flops/(t1-t0)/NN<<std::endl;
-    DwH.Report();
-  }
-
-  GridCartesian         * UGrid_d   = SpaceTimeGrid::makeFourDimGrid(GridDefaultLatt(), GridDefaultSimd(Nd,vComplexD::Nsimd()),GridDefaultMpi());
-  GridRedBlackCartesian * UrbGrid_d = SpaceTimeGrid::makeFourDimRedBlackGrid(UGrid_d);
-  GridCartesian         * FGrid_d   = SpaceTimeGrid::makeFiveDimGrid(Ls,UGrid_d);
-  GridRedBlackCartesian * FrbGrid_d = SpaceTimeGrid::makeFiveDimRedBlackGrid(Ls,UGrid_d);
-
-  
-  std::cout << GridLogMessage<< "* DOUBLE/DOUBLE"<<std::endl;
-  GparityLatticeFermionD src_d(FGrid_d);
-  precisionChange(src_d,src);
-
-  LatticeGaugeFieldD Umu_d(UGrid_d); 
-  precisionChange(Umu_d,Umu);
-
-  GparityLatticeFermionD result_d(FGrid_d);
-
-  GparityDomainWallFermionD DwD(Umu_d,*FGrid_d,*FrbGrid_d,*UGrid_d,*UrbGrid_d,mass,M5);
-  if (1) {
-    FGrid_d->Barrier();
-    DwD.ZeroCounters();
-    DwD.Dhop(src_d,result_d,0);
-    std::cout<<GridLogMessage<<"Called warmup"<<std::endl;
-    double t0=usecond();
-    for(int i=0;i<ncall;i++){
-      __SSC_START;
-      DwD.Dhop(src_d,result_d,0);
-      __SSC_STOP;
-    }
-    double t1=usecond();
-    FGrid_d->Barrier();
-    
-    double volume=Ls;  for(int mu=0;mu<Nd;mu++) volume=volume*latt4[mu];
-    double flops=2*1344*volume*ncall;
-
-    std::cout<<GridLogMessage << "Called Dw "<<ncall<<" times in "<<t1-t0<<" us"<<std::endl;
-    //    std::cout<<GridLogMessage << "norm result "<< norm2(result)<<std::endl;
-    //    std::cout<<GridLogMessage << "norm ref    "<< norm2(ref)<<std::endl;
-    std::cout<<GridLogMessage << "mflop/s =   "<< flops/(t1-t0)<<std::endl;
-    std::cout<<GridLogMessage << "mflop/s per rank =  "<< flops/(t1-t0)/NP<<std::endl;
-    std::cout<<GridLogMessage << "mflop/s per node =  "<< flops/(t1-t0)/NN<<std::endl;
-    DwD.Report();
-  }
-
-  Grid_finalize();
-}
-

benchmarks/Benchmark_memory_asynch.cc

@@ -66,8 +66,7 @@ int main (int argc, char ** argv)
 
     Vec tsum; tsum = zero;
 
-    GridParallelRNG          pRNG(&Grid);      
+    GridParallelRNG          pRNG(&Grid);      pRNG.SeedRandomDevice();
-    pRNG.SeedFixedIntegers(std::vector<int>({56,17,89,101}));
 
     std::vector<double> stop(threads);
     Vector<Vec> sum(threads);
@@ -78,7 +77,8 @@ int main (int argc, char ** argv)
     }
 
     double start=usecond();
-    parallel_for(int t=0;t<threads;t++){
+PARALLEL_FOR_LOOP
+    for(int t=0;t<threads;t++){
 
       sum[t] = x[t]._odata[0];
       for(int i=0;i<Nloop;i++){

benchmarks/Benchmark_memory_bandwidth.cc

@@ -55,21 +55,21 @@ int main (int argc, char ** argv)
   std::cout<<GridLogMessage << "===================================================================================================="<<std::endl;
   std::cout<<GridLogMessage << "  L  "<<"\t\t"<<"bytes"<<"\t\t\t"<<"GB/s"<<"\t\t"<<"Gflop/s"<<"\t\t seconds"<<std::endl;
   std::cout<<GridLogMessage << "----------------------------------------------------------"<<std::endl;
-  uint64_t lmax=96;
+  uint64_t lmax=44;
-#define NLOOP (10*lmax*lmax*lmax*lmax/vol)
+#define NLOOP (1*lmax*lmax*lmax*lmax/vol)
-  for(int lat=8;lat<=lmax;lat+=8){
+  for(int lat=4;lat<=lmax;lat+=4){
 
       std::vector<int> latt_size  ({lat*mpi_layout[0],lat*mpi_layout[1],lat*mpi_layout[2],lat*mpi_layout[3]});
-      int64_t vol= latt_size[0]*latt_size[1]*latt_size[2]*latt_size[3];
+      int vol = latt_size[0]*latt_size[1]*latt_size[2]*latt_size[3];
       GridCartesian     Grid(latt_size,simd_layout,mpi_layout);
 
       uint64_t Nloop=NLOOP;
 
-      //      GridParallelRNG          pRNG(&Grid);      pRNG.SeedFixedIntegers(std::vector<int>({45,12,81,9}));
+      //      GridParallelRNG          pRNG(&Grid);      pRNG.SeedRandomDevice();
 
-      LatticeVec z(&Grid);// random(pRNG,z);
+      LatticeVec z(&Grid); //random(pRNG,z);
-      LatticeVec x(&Grid);// random(pRNG,x);
+      LatticeVec x(&Grid); //random(pRNG,x);
-      LatticeVec y(&Grid);// random(pRNG,y);
+      LatticeVec y(&Grid); //random(pRNG,y);
       double a=2.0;
 
 
@@ -83,7 +83,7 @@ int main (int argc, char ** argv)
       double time = (stop-start)/Nloop*1000;
       
       double flops=vol*Nvec*2;// mul,add
-      double bytes=3.0*vol*Nvec*sizeof(Real);
+      double bytes=3*vol*Nvec*sizeof(Real);
       std::cout<<GridLogMessage<<std::setprecision(3) << lat<<"\t\t"<<bytes<<"   \t\t"<<bytes/time<<"\t\t"<<flops/time<<"\t\t"<<(stop-start)/1000./1000.<<std::endl;
 
     }
@@ -94,17 +94,17 @@ int main (int argc, char ** argv)
   std::cout<<GridLogMessage << "  L  "<<"\t\t"<<"bytes"<<"\t\t\t"<<"GB/s"<<"\t\t"<<"Gflop/s"<<"\t\t seconds"<<std::endl;
   std::cout<<GridLogMessage << "----------------------------------------------------------"<<std::endl;
   
-  for(int lat=8;lat<=lmax;lat+=8){
+  for(int lat=4;lat<=lmax;lat+=4){
 
       std::vector<int> latt_size  ({lat*mpi_layout[0],lat*mpi_layout[1],lat*mpi_layout[2],lat*mpi_layout[3]});
-      int64_t vol= latt_size[0]*latt_size[1]*latt_size[2]*latt_size[3];
+      int vol = latt_size[0]*latt_size[1]*latt_size[2]*latt_size[3];
       GridCartesian     Grid(latt_size,simd_layout,mpi_layout);
 
-      //      GridParallelRNG          pRNG(&Grid);      pRNG.SeedFixedIntegers(std::vector<int>({45,12,81,9}));
+      //      GridParallelRNG          pRNG(&Grid);      pRNG.SeedRandomDevice();
 
-      LatticeVec z(&Grid);// random(pRNG,z);
+      LatticeVec z(&Grid); //random(pRNG,z);
-      LatticeVec x(&Grid);// random(pRNG,x);
+      LatticeVec x(&Grid); //random(pRNG,x);
-      LatticeVec y(&Grid);// random(pRNG,y);
+      LatticeVec y(&Grid); //random(pRNG,y);
       double a=2.0;
 
       uint64_t Nloop=NLOOP;
@@ -119,7 +119,7 @@ int main (int argc, char ** argv)
       double time = (stop-start)/Nloop*1000;
      
       double flops=vol*Nvec*2;// mul,add
-      double bytes=3.0*vol*Nvec*sizeof(Real);
+      double bytes=3*vol*Nvec*sizeof(Real);
       std::cout<<GridLogMessage<<std::setprecision(3) << lat<<"\t\t"<<bytes<<"   \t\t"<<bytes/time<<"\t\t"<<flops/time<<"\t\t"<<(stop-start)/1000./1000.<<std::endl;
 
     }
@@ -129,20 +129,20 @@ int main (int argc, char ** argv)
   std::cout<<GridLogMessage << "===================================================================================================="<<std::endl;
   std::cout<<GridLogMessage << "  L  "<<"\t\t"<<"bytes"<<"\t\t\t"<<"GB/s"<<"\t\t"<<"Gflop/s"<<"\t\t seconds"<<std::endl;
 
-  for(int lat=8;lat<=lmax;lat+=8){
+  for(int lat=4;lat<=lmax;lat+=4){
 
 
       std::vector<int> latt_size  ({lat*mpi_layout[0],lat*mpi_layout[1],lat*mpi_layout[2],lat*mpi_layout[3]});
-      int64_t vol= latt_size[0]*latt_size[1]*latt_size[2]*latt_size[3];
+      int vol = latt_size[0]*latt_size[1]*latt_size[2]*latt_size[3];
       uint64_t Nloop=NLOOP;
 
       GridCartesian     Grid(latt_size,simd_layout,mpi_layout);
 
-      //      GridParallelRNG          pRNG(&Grid);      pRNG.SeedFixedIntegers(std::vector<int>({45,12,81,9}));
+      //      GridParallelRNG          pRNG(&Grid);      pRNG.SeedRandomDevice();
 
-      LatticeVec z(&Grid);// random(pRNG,z);
+      LatticeVec z(&Grid); //random(pRNG,z);
-      LatticeVec x(&Grid);// random(pRNG,x);
+      LatticeVec x(&Grid); //random(pRNG,x);
-      LatticeVec y(&Grid);// random(pRNG,y);
+      LatticeVec y(&Grid); //random(pRNG,y);
       RealD a=2.0;
 
 
@@ -154,7 +154,7 @@ int main (int argc, char ** argv)
       double stop=usecond();
       double time = (stop-start)/Nloop*1000;
       
-      double bytes=2.0*vol*Nvec*sizeof(Real);
+      double bytes=2*vol*Nvec*sizeof(Real);
       double flops=vol*Nvec*1;// mul
       std::cout<<GridLogMessage <<std::setprecision(3) << lat<<"\t\t"<<bytes<<"   \t\t"<<bytes/time<<"\t\t"<<flops/time<<"\t\t"<<(stop-start)/1000./1000.<<std::endl;
 
@@ -166,17 +166,17 @@ int main (int argc, char ** argv)
   std::cout<<GridLogMessage << "  L  "<<"\t\t"<<"bytes"<<"\t\t\t"<<"GB/s"<<"\t\t"<<"Gflop/s"<<"\t\t seconds"<<std::endl;
   std::cout<<GridLogMessage << "----------------------------------------------------------"<<std::endl;
 
-  for(int lat=8;lat<=lmax;lat+=8){
+  for(int lat=4;lat<=lmax;lat+=4){
 
       std::vector<int> latt_size  ({lat*mpi_layout[0],lat*mpi_layout[1],lat*mpi_layout[2],lat*mpi_layout[3]});
-      int64_t vol= latt_size[0]*latt_size[1]*latt_size[2]*latt_size[3];
+      int vol = latt_size[0]*latt_size[1]*latt_size[2]*latt_size[3];
       uint64_t Nloop=NLOOP;
       GridCartesian     Grid(latt_size,simd_layout,mpi_layout);
 
-      //      GridParallelRNG          pRNG(&Grid);      pRNG.SeedFixedIntegers(std::vector<int>({45,12,81,9}));
+      //      GridParallelRNG          pRNG(&Grid);      pRNG.SeedRandomDevice();
-      LatticeVec z(&Grid);// random(pRNG,z);
+      LatticeVec z(&Grid); //random(pRNG,z);
-      LatticeVec x(&Grid);// random(pRNG,x);
+      LatticeVec x(&Grid); //random(pRNG,x);
-      LatticeVec y(&Grid);// random(pRNG,y);
+      LatticeVec y(&Grid); //random(pRNG,y);
       RealD a=2.0;
       Real nn;      
       double start=usecond();
@@ -187,7 +187,7 @@ int main (int argc, char ** argv)
       double stop=usecond();
       double time = (stop-start)/Nloop*1000;
       
-      double bytes=1.0*vol*Nvec*sizeof(Real);
+      double bytes=vol*Nvec*sizeof(Real);
       double flops=vol*Nvec*2;// mul,add
       std::cout<<GridLogMessage<<std::setprecision(3) << lat<<"\t\t"<<bytes<<"  \t\t"<<bytes/time<<"\t\t"<<flops/time<< "\t\t"<<(stop-start)/1000./1000.<< "\t\t " <<std::endl;
 

benchmarks/Benchmark_staggered.cc

@@ -1,134 +0,0 @@
-    /*************************************************************************************
-
-    Grid physics library, www.github.com/paboyle/Grid 
-
-    Source file: ./benchmarks/Benchmark_staggered.cc
-
-    Copyright (C) 2015
-
-Author: Peter Boyle <paboyle@ph.ed.ac.uk>
-Author: paboyle <paboyle@ph.ed.ac.uk>
-
-    This program is free software; you can redistribute it and/or modify
-    it under the terms of the GNU General Public License as published by
-    the Free Software Foundation; either version 2 of the License, or
-    (at your option) any later version.
-
-    This program is distributed in the hope that it will be useful,
-    but WITHOUT ANY WARRANTY; without even the implied warranty of
-    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-    GNU General Public License for more details.
-
-    You should have received a copy of the GNU General Public License along
-    with this program; if not, write to the Free Software Foundation, Inc.,
-    51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
-
-    See the full license in the file "LICENSE" in the top level distribution directory
-    *************************************************************************************/
-    /*  END LEGAL */
-#include <Grid/Grid.h>
-
-using namespace std;
-using namespace Grid;
-using namespace Grid::QCD;
-
-int main (int argc, char ** argv)
-{
-  Grid_init(&argc,&argv);
-
-  std::vector<int> latt_size   = GridDefaultLatt();
-  std::vector<int> simd_layout = GridDefaultSimd(Nd,vComplex::Nsimd());
-  std::vector<int> mpi_layout  = GridDefaultMpi();
-  GridCartesian               Grid(latt_size,simd_layout,mpi_layout);
-  GridRedBlackCartesian     RBGrid(&Grid);
-
-  int threads = GridThread::GetThreads();
-  std::cout<<GridLogMessage << "Grid is setup to use "<<threads<<" threads"<<std::endl;
-  std::cout<<GridLogMessage << "Grid floating point word size is REALF"<< sizeof(RealF)<<std::endl;
-  std::cout<<GridLogMessage << "Grid floating point word size is REALD"<< sizeof(RealD)<<std::endl;
-  std::cout<<GridLogMessage << "Grid floating point word size is REAL"<< sizeof(Real)<<std::endl;
-
-  std::vector<int> seeds({1,2,3,4});
-  GridParallelRNG          pRNG(&Grid);
-  pRNG.SeedFixedIntegers(seeds);
-  //  pRNG.SeedFixedIntegers(std::vector<int>({45,12,81,9});
-
-  typedef typename ImprovedStaggeredFermionR::FermionField FermionField; 
-  typename ImprovedStaggeredFermionR::ImplParams params; 
-
-  FermionField src   (&Grid); random(pRNG,src);
-  FermionField result(&Grid); result=zero;
-  FermionField    ref(&Grid);    ref=zero;
-  FermionField    tmp(&Grid);    tmp=zero;
-  FermionField    err(&Grid);    tmp=zero;
-  LatticeGaugeField Umu(&Grid); random(pRNG,Umu);
-  std::vector<LatticeColourMatrix> U(4,&Grid);
-
-  double volume=1;
-  for(int mu=0;mu<Nd;mu++){
-    volume=volume*latt_size[mu];
-  }  
-
-  // Only one non-zero (y)
-#if 0
-  Umu=zero;
-  Complex cone(1.0,0.0);
-  for(int nn=0;nn<Nd;nn++){
-    random(pRNG,U[nn]);
-    if(1) {
-      if (nn!=2) { U[nn]=zero; std::cout<<GridLogMessage << "zeroing gauge field in dir "<<nn<<std::endl; }
-      //      else       { U[nn]= cone;std::cout<<GridLogMessage << "unit gauge field in dir "<<nn<<std::endl; }
-      else       { std::cout<<GridLogMessage << "random gauge field in dir "<<nn<<std::endl; }
-    }
-    PokeIndex<LorentzIndex>(Umu,U[nn],nn);
-  }
-#endif
-
-  for(int mu=0;mu<Nd;mu++){
-    U[mu] = PeekIndex<LorentzIndex>(Umu,mu);
-  }
-  ref = zero;
-  /*  
-  { // Naive wilson implementation
-    ref = zero;
-    for(int mu=0;mu<Nd;mu++){
-      //    ref =  src + Gamma(Gamma::GammaX)* src ; // 1-gamma_x
-      tmp = U[mu]*Cshift(src,mu,1);
-      for(int i=0;i<ref._odata.size();i++){
-	ref._odata[i]+= tmp._odata[i] - Gamma(Gmu[mu])*tmp._odata[i]; ;
-      }
-
-      tmp =adj(U[mu])*src;
-      tmp =Cshift(tmp,mu,-1);
-      for(int i=0;i<ref._odata.size();i++){
-	ref._odata[i]+= tmp._odata[i] + Gamma(Gmu[mu])*tmp._odata[i]; ;
-      }
-    }
-  }
-  ref = -0.5*ref;
-  */
-
-  RealD mass=0.1;
-  RealD c1=9.0/8.0;
-  RealD c2=-1.0/24.0;
-  RealD u0=1.0;
-  ImprovedStaggeredFermionR Ds(Umu,Umu,Grid,RBGrid,mass,c1,c2,u0,params);
-  
-  std::cout<<GridLogMessage << "Calling Ds"<<std::endl;
-  int ncall=1000;
-  double t0=usecond();
-  for(int i=0;i<ncall;i++){
-    Ds.Dhop(src,result,0);
-  }
-  double t1=usecond();
-  double flops=(16*(3*(6+8+8)) + 15*3*2)*volume*ncall; // == 66*16 +  == 1146
-  
-  std::cout<<GridLogMessage << "Called Ds"<<std::endl;
-  std::cout<<GridLogMessage << "norm result "<< norm2(result)<<std::endl;
-  std::cout<<GridLogMessage << "norm ref    "<< norm2(ref)<<std::endl;
-  std::cout<<GridLogMessage << "mflop/s =   "<< flops/(t1-t0)<<std::endl;
-  err = ref-result; 
-  std::cout<<GridLogMessage << "norm diff   "<< norm2(err)<<std::endl;
-
-  Grid_finalize();
-}

benchmarks/Benchmark_su3.cc

@@ -35,14 +35,13 @@ using namespace Grid::QCD;
 int main (int argc, char ** argv)
 {
   Grid_init(&argc,&argv);
-#define LMAX (64)
 
-  int64_t Nloop=20;
+  int Nloop=1000;
 
   std::vector<int> simd_layout = GridDefaultSimd(Nd,vComplex::Nsimd());
   std::vector<int> mpi_layout  = GridDefaultMpi();
 
-  int64_t threads = GridThread::GetThreads();
+  int threads = GridThread::GetThreads();
   std::cout<<GridLogMessage << "Grid is setup to use "<<threads<<" threads"<<std::endl;
 
   std::cout<<GridLogMessage << "===================================================================================================="<<std::endl;
@@ -51,19 +50,19 @@ int main (int argc, char ** argv)
   std::cout<<GridLogMessage << "  L  "<<"\t\t"<<"bytes"<<"\t\t\t"<<"GB/s\t\t GFlop/s"<<std::endl;
   std::cout<<GridLogMessage << "----------------------------------------------------------"<<std::endl;
 
-  for(int lat=2;lat<=LMAX;lat+=2){
+  for(int lat=2;lat<=32;lat+=2){
 
       std::vector<int> latt_size  ({lat*mpi_layout[0],lat*mpi_layout[1],lat*mpi_layout[2],lat*mpi_layout[3]});
-      int64_t vol = latt_size[0]*latt_size[1]*latt_size[2]*latt_size[3];
+      int vol = latt_size[0]*latt_size[1]*latt_size[2]*latt_size[3];
       GridCartesian     Grid(latt_size,simd_layout,mpi_layout);
-      GridParallelRNG          pRNG(&Grid);      pRNG.SeedFixedIntegers(std::vector<int>({45,12,81,9}));
+      //      GridParallelRNG          pRNG(&Grid);      pRNG.SeedRandomDevice();
 
-      LatticeColourMatrix z(&Grid); random(pRNG,z);
+      LatticeColourMatrix z(&Grid);// random(pRNG,z);
-      LatticeColourMatrix x(&Grid); random(pRNG,x);
+      LatticeColourMatrix x(&Grid);// random(pRNG,x);
-      LatticeColourMatrix y(&Grid); random(pRNG,y);
+      LatticeColourMatrix y(&Grid);// random(pRNG,y);
 
       double start=usecond();
-      for(int64_t i=0;i<Nloop;i++){
+      for(int i=0;i<Nloop;i++){
 	x=x*y;
       }
       double stop=usecond();
@@ -83,20 +82,20 @@ int main (int argc, char ** argv)
   std::cout<<GridLogMessage << "  L  "<<"\t\t"<<"bytes"<<"\t\t\t"<<"GB/s\t\t GFlop/s"<<std::endl;
   std::cout<<GridLogMessage << "----------------------------------------------------------"<<std::endl;
 
-  for(int lat=2;lat<=LMAX;lat+=2){
+  for(int lat=2;lat<=32;lat+=2){
 
       std::vector<int> latt_size  ({lat*mpi_layout[0],lat*mpi_layout[1],lat*mpi_layout[2],lat*mpi_layout[3]});
-      int64_t vol = latt_size[0]*latt_size[1]*latt_size[2]*latt_size[3];
+      int vol = latt_size[0]*latt_size[1]*latt_size[2]*latt_size[3];
 
       GridCartesian     Grid(latt_size,simd_layout,mpi_layout);
-      GridParallelRNG          pRNG(&Grid);      pRNG.SeedFixedIntegers(std::vector<int>({45,12,81,9}));
+      //      GridParallelRNG          pRNG(&Grid);      pRNG.SeedRandomDevice();
 
-      LatticeColourMatrix z(&Grid); random(pRNG,z);
+      LatticeColourMatrix z(&Grid); //random(pRNG,z);
-      LatticeColourMatrix x(&Grid); random(pRNG,x);
+      LatticeColourMatrix x(&Grid); //random(pRNG,x);
-      LatticeColourMatrix y(&Grid); random(pRNG,y);
+      LatticeColourMatrix y(&Grid); //random(pRNG,y);
 
       double start=usecond();
-      for(int64_t i=0;i<Nloop;i++){
+      for(int i=0;i<Nloop;i++){
 	z=x*y;
       }
       double stop=usecond();
@@ -114,20 +113,20 @@ int main (int argc, char ** argv)
   std::cout<<GridLogMessage << "  L  "<<"\t\t"<<"bytes"<<"\t\t\t"<<"GB/s\t\t GFlop/s"<<std::endl;
   std::cout<<GridLogMessage << "----------------------------------------------------------"<<std::endl;
 
-  for(int lat=2;lat<=LMAX;lat+=2){
+  for(int lat=2;lat<=32;lat+=2){
 
       std::vector<int> latt_size  ({lat*mpi_layout[0],lat*mpi_layout[1],lat*mpi_layout[2],lat*mpi_layout[3]});
-      int64_t vol = latt_size[0]*latt_size[1]*latt_size[2]*latt_size[3];
+      int vol = latt_size[0]*latt_size[1]*latt_size[2]*latt_size[3];
 
       GridCartesian     Grid(latt_size,simd_layout,mpi_layout);
-      GridParallelRNG          pRNG(&Grid);      pRNG.SeedFixedIntegers(std::vector<int>({45,12,81,9}));
+      //      GridParallelRNG          pRNG(&Grid);      pRNG.SeedRandomDevice();
 
-      LatticeColourMatrix z(&Grid); random(pRNG,z);
+      LatticeColourMatrix z(&Grid); //random(pRNG,z);
-      LatticeColourMatrix x(&Grid); random(pRNG,x);
+      LatticeColourMatrix x(&Grid); //random(pRNG,x);
-      LatticeColourMatrix y(&Grid); random(pRNG,y);
+      LatticeColourMatrix y(&Grid); //random(pRNG,y);
 
       double start=usecond();
-      for(int64_t i=0;i<Nloop;i++){
+      for(int i=0;i<Nloop;i++){
 	mult(z,x,y);
       }
       double stop=usecond();
@@ -145,20 +144,20 @@ int main (int argc, char ** argv)
   std::cout<<GridLogMessage << "  L  "<<"\t\t"<<"bytes"<<"\t\t\t"<<"GB/s\t\t GFlop/s"<<std::endl;
   std::cout<<GridLogMessage << "----------------------------------------------------------"<<std::endl;
 
-  for(int lat=2;lat<=LMAX;lat+=2){
+  for(int lat=2;lat<=32;lat+=2){
 
       std::vector<int> latt_size  ({lat*mpi_layout[0],lat*mpi_layout[1],lat*mpi_layout[2],lat*mpi_layout[3]});
-      int64_t vol = latt_size[0]*latt_size[1]*latt_size[2]*latt_size[3];
+      int vol = latt_size[0]*latt_size[1]*latt_size[2]*latt_size[3];
 
       GridCartesian     Grid(latt_size,simd_layout,mpi_layout);
-      GridParallelRNG          pRNG(&Grid);      pRNG.SeedFixedIntegers(std::vector<int>({45,12,81,9}));
+      //      GridParallelRNG          pRNG(&Grid);      pRNG.SeedRandomDevice();
 
-      LatticeColourMatrix z(&Grid); random(pRNG,z);
+      LatticeColourMatrix z(&Grid); //random(pRNG,z);
-      LatticeColourMatrix x(&Grid); random(pRNG,x);
+      LatticeColourMatrix x(&Grid); //random(pRNG,x);
-      LatticeColourMatrix y(&Grid); random(pRNG,y);
+      LatticeColourMatrix y(&Grid); //random(pRNG,y);
 
       double start=usecond();
-      for(int64_t i=0;i<Nloop;i++){
+      for(int i=0;i<Nloop;i++){
 	mac(z,x,y);
       }
       double stop=usecond();

benchmarks/Benchmark_wilson.cc

@@ -58,7 +58,7 @@ int main (int argc, char ** argv)
   std::vector<int> simd_layout = GridDefaultSimd(Nd,vComplex::Nsimd());
   std::vector<int> mpi_layout  = GridDefaultMpi();
   GridCartesian               Grid(latt_size,simd_layout,mpi_layout);
-  GridRedBlackCartesian     RBGrid(&Grid);
+  GridRedBlackCartesian     RBGrid(latt_size,simd_layout,mpi_layout);
 
   int threads = GridThread::GetThreads();
   std::cout<<GridLogMessage << "Grid is setup to use "<<threads<<" threads"<<std::endl;
@@ -69,7 +69,7 @@ int main (int argc, char ** argv)
   std::vector<int> seeds({1,2,3,4});
   GridParallelRNG          pRNG(&Grid);
   pRNG.SeedFixedIntegers(seeds);
-  //  pRNG.SeedFixedIntegers(std::vector<int>({45,12,81,9});
+  //  pRNG.SeedRandomDevice();
 
   LatticeFermion src   (&Grid); random(pRNG,src);
   LatticeFermion result(&Grid); result=zero;

benchmarks/Benchmark_wilson_sweep.cc

@@ -93,7 +93,7 @@ int main (int argc, char ** argv)
 	  std::cout << latt_size.back() << "\t\t";
 
 	  GridCartesian           Grid(latt_size,simd_layout,mpi_layout);
-	  GridRedBlackCartesian RBGrid(&Grid);
+	  GridRedBlackCartesian RBGrid(latt_size,simd_layout,mpi_layout);
 
 	  GridParallelRNG  pRNG(&Grid); pRNG.SeedFixedIntegers(seeds);
 	  LatticeGaugeField Umu(&Grid); random(pRNG,Umu);

benchmarks/Makefile.am

@@ -1,7 +1,11 @@
 include Make.inc
 
-bench-local: all
+simple: simple_su3_test.o simple_su3_expr.o simple_simd_test.o
-	./Benchmark_su3
+
-	./Benchmark_memory_bandwidth
+EXTRA_LIBRARIES = libsimple_su3_test.a libsimple_su3_expr.a libsimple_simd_test.a
-	./Benchmark_wilson
+
-	./Benchmark_dwf --dslash-unroll
+libsimple_su3_test_a_SOURCES = simple_su3_test.cc
+
+libsimple_su3_expr_a_SOURCES = simple_su3_expr.cc
+
+libsimple_simd_test_a_SOURCES = simple_simd_test.cc

bootstrap.sh

@@ -1,6 +1,6 @@
 #!/usr/bin/env bash
 
-EIGEN_URL='http://bitbucket.org/eigen/eigen/get/3.3.3.tar.bz2'
+EIGEN_URL='http://bitbucket.org/eigen/eigen/get/3.2.9.tar.bz2'
 
 echo "-- deploying Eigen source..."
 wget ${EIGEN_URL} --no-check-certificate

configure.ac

@@ -1,23 +1,16 @@
 AC_PREREQ([2.63])
-AC_INIT([Grid], [0.7.0], [https://github.com/paboyle/Grid], [Grid])
+AC_INIT([Grid], [0.6.0], [https://github.com/paboyle/Grid], [Grid])
 AC_CANONICAL_BUILD
 AC_CANONICAL_HOST
 AC_CANONICAL_TARGET
-AM_INIT_AUTOMAKE([subdir-objects 1.13])
+AM_INIT_AUTOMAKE(subdir-objects)
-AM_EXTRA_RECURSIVE_TARGETS([tests bench])
 AC_CONFIG_MACRO_DIR([m4])
 AC_CONFIG_SRCDIR([lib/Grid.h])
 AC_CONFIG_HEADERS([lib/Config.h],[sed -i 's|PACKAGE_|GRID_|' lib/Config.h])
 m4_ifdef([AM_SILENT_RULES], [AM_SILENT_RULES([yes])])
 
-################ Get git info
-#AC_REVISION([m4_esyscmd_s([./scripts/configure.commit])])
-
-################ Set flags
-# do not move!
-CXXFLAGS="-O3 $CXXFLAGS"
-
 ############### Checks for programs
+CXXFLAGS="-O3 $CXXFLAGS"
 AC_PROG_CXX
 AC_PROG_RANLIB
 
@@ -31,14 +24,12 @@ AX_GXX_VERSION
 AC_DEFINE_UNQUOTED([GXX_VERSION],["$GXX_VERSION"],
       [version of g++ that will compile the code])
 
-
-
 ############### Checks for typedefs, structures, and compiler characteristics
 AC_TYPE_SIZE_T
 AC_TYPE_UINT32_T
 AC_TYPE_UINT64_T
 
-############### OpenMP
+############### OpenMP 
 AC_OPENMP
 ac_openmp=no
 if test "${OPENMP_CXXFLAGS}X" != "X"; then
@@ -54,14 +45,9 @@ AC_CHECK_HEADERS(malloc/malloc.h)
 AC_CHECK_HEADERS(malloc.h)
 AC_CHECK_HEADERS(endian.h)
 AC_CHECK_HEADERS(execinfo.h)
-AC_CHECK_HEADERS(numaif.h)
 AC_CHECK_DECLS([ntohll],[], [], [[#include <arpa/inet.h>]])
 AC_CHECK_DECLS([be64toh],[], [], [[#include <arpa/inet.h>]])
 
-############## Standard libraries
-AC_CHECK_LIB([m],[cos])
-AC_CHECK_LIB([stdc++],[abort])
-
 ############### GMP and MPFR
 AC_ARG_WITH([gmp],
     [AS_HELP_STRING([--with-gmp=prefix],
@@ -74,23 +60,16 @@ AC_ARG_WITH([mpfr],
     [AM_CXXFLAGS="-I$with_mpfr/include $AM_CXXFLAGS"]
     [AM_LDFLAGS="-L$with_mpfr/lib $AM_LDFLAGS"])
 
-############### FFTW3
+############### FFTW3 
-AC_ARG_WITH([fftw],
+AC_ARG_WITH([fftw],    
             [AS_HELP_STRING([--with-fftw=prefix],
             [try this for a non-standard install prefix of the FFTW3 library])],
             [AM_CXXFLAGS="-I$with_fftw/include $AM_CXXFLAGS"]
             [AM_LDFLAGS="-L$with_fftw/lib $AM_LDFLAGS"])
 
-############### LIME
+############### lapack 
-AC_ARG_WITH([lime],
-            [AS_HELP_STRING([--with-lime=prefix],
-            [try this for a non-standard install prefix of the LIME library])],
-            [AM_CXXFLAGS="-I$with_lime/include $AM_CXXFLAGS"]
-            [AM_LDFLAGS="-L$with_lime/lib $AM_LDFLAGS"])
-
-############### lapack
 AC_ARG_ENABLE([lapack],
-    [AC_HELP_STRING([--enable-lapack=yes|no|prefix], [enable LAPACK])],
+    [AC_HELP_STRING([--enable-lapack=yes|no|prefix], [enable LAPACK])], 
     [ac_LAPACK=${enable_lapack}], [ac_LAPACK=no])
 
 case ${ac_LAPACK} in
@@ -104,18 +83,6 @@ case ${ac_LAPACK} in
         AC_DEFINE([USE_LAPACK],[1],[use LAPACK]);;
 esac
 
-############### FP16 conversions
-AC_ARG_ENABLE([sfw-fp16],
-    [AC_HELP_STRING([--enable-sfw-fp16=yes|no], [enable software fp16 comms])],
-    [ac_SFW_FP16=${enable_sfw_fp16}], [ac_SFW_FP16=yes])
-case ${ac_SFW_FP16} in
-    yes)
-      AC_DEFINE([SFW_FP16],[1],[software conversion to fp16]);;
-    no);;
-    *)
-      AC_MSG_ERROR(["SFW FP16 option not supported ${ac_SFW_FP16}"]);;
-esac
-
 ############### MKL
 AC_ARG_ENABLE([mkl],
     [AC_HELP_STRING([--enable-mkl=yes|no|prefix], [enable Intel MKL for LAPACK & FFTW])],
@@ -141,7 +108,7 @@ AC_ARG_WITH([hdf5],
 
 ############### first-touch
 AC_ARG_ENABLE([numa],
-    [AC_HELP_STRING([--enable-numa=yes|no|prefix], [enable first touch numa opt])],
+    [AC_HELP_STRING([--enable-numa=yes|no|prefix], [enable first touch numa opt])], 
     [ac_NUMA=${enable_NUMA}],[ac_NUMA=no])
 
 case ${ac_NUMA} in
@@ -167,8 +134,8 @@ if test "${ac_MKL}x" != "nox"; then
 fi
 
 AC_SEARCH_LIBS([__gmpf_init], [gmp],
-               [AC_SEARCH_LIBS([mpfr_init], [mpfr],
+               [AC_SEARCH_LIBS([mpfr_init], [mpfr], 
-                               [AC_DEFINE([HAVE_LIBMPFR], [1],
+                               [AC_DEFINE([HAVE_LIBMPFR], [1], 
                                           [Define to 1 if you have the `MPFR' library])]
                                [have_mpfr=true], [AC_MSG_ERROR([MPFR library not found])])]
                [AC_DEFINE([HAVE_LIBGMP], [1], [Define to 1 if you have the `GMP' library])]
@@ -177,7 +144,7 @@ AC_SEARCH_LIBS([__gmpf_init], [gmp],
 if test "${ac_LAPACK}x" != "nox"; then
     AC_SEARCH_LIBS([LAPACKE_sbdsdc], [lapack], [],
                    [AC_MSG_ERROR("LAPACK enabled but library not found")])
-fi
+fi   
 
 AC_SEARCH_LIBS([fftw_execute], [fftw3],
                [AC_SEARCH_LIBS([fftwf_execute], [fftw3f], [],
@@ -185,23 +152,6 @@ AC_SEARCH_LIBS([fftw_execute], [fftw3],
                [AC_DEFINE([HAVE_FFTW], [1], [Define to 1 if you have the `FFTW' library])]
                [have_fftw=true])
 
-AC_SEARCH_LIBS([limeCreateReader], [lime],
-               [AC_DEFINE([HAVE_LIME], [1], [Define to 1 if you have the `LIME' library])]
-               [have_lime=true],
-	       [AC_MSG_WARN(C-LIME library was not found in your system.
-In order to use ILGG file format please install or provide the correct path to your installation
-Info at: http://usqcd.jlab.org/usqcd-docs/c-lime/)])
-
-AC_SEARCH_LIBS([crc32], [z],
-               [AC_DEFINE([HAVE_ZLIB], [1], [Define to 1 if you have the `LIBZ' library])]
-               [have_zlib=true] [LIBS="${LIBS} -lz"],
-	       [AC_MSG_ERROR(zlib library was not found in your system.)])
-
-AC_SEARCH_LIBS([move_pages], [numa],
-               [AC_DEFINE([HAVE_LIBNUMA], [1], [Define to 1 if you have the `LIBNUMA' library])]
-               [have_libnuma=true] [LIBS="${LIBS} -lnuma"],
-	       [AC_MSG_WARN(libnuma library was not found in your system. Some optimisations will not apply)])
-
 AC_SEARCH_LIBS([H5Fopen], [hdf5_cpp],
                [AC_DEFINE([HAVE_HDF5], [1], [Define to 1 if you have the `HDF5' library])]
                [have_hdf5=true]
@@ -226,26 +176,19 @@ case ${ax_cv_cxx_compiler_vendor} in
     case ${ac_SIMD} in
       SSE4)
         AC_DEFINE([SSE4],[1],[SSE4 intrinsics])
-	case ${ac_SFW_FP16} in
+        SIMD_FLAGS='-msse4.2';;
-	  yes)
-	  SIMD_FLAGS='-msse4.2';;
-	  no)
-	  SIMD_FLAGS='-msse4.2 -mf16c';;
-	  *)
-          AC_MSG_ERROR(["SFW_FP16 must be either yes or no value ${ac_SFW_FP16} "]);;
-	esac;;
       AVX)
         AC_DEFINE([AVX1],[1],[AVX intrinsics])
-        SIMD_FLAGS='-mavx -mf16c';;
+        SIMD_FLAGS='-mavx';;
       AVXFMA4)
         AC_DEFINE([AVXFMA4],[1],[AVX intrinsics with FMA4])
-        SIMD_FLAGS='-mavx -mfma4 -mf16c';;
+        SIMD_FLAGS='-mavx -mfma4';;
       AVXFMA)
         AC_DEFINE([AVXFMA],[1],[AVX intrinsics with FMA3])
-        SIMD_FLAGS='-mavx -mfma -mf16c';;
+        SIMD_FLAGS='-mavx -mfma';;
       AVX2)
         AC_DEFINE([AVX2],[1],[AVX2 intrinsics])
-        SIMD_FLAGS='-mavx2 -mfma -mf16c';;
+        SIMD_FLAGS='-mavx2 -mfma';;
       AVX512)
         AC_DEFINE([AVX512],[1],[AVX512 intrinsics])
         SIMD_FLAGS='-mavx512f -mavx512pf -mavx512er -mavx512cd';;
@@ -254,7 +197,6 @@ case ${ax_cv_cxx_compiler_vendor} in
         SIMD_FLAGS='';;
       KNL)
         AC_DEFINE([AVX512],[1],[AVX512 intrinsics])
-        AC_DEFINE([KNL],[1],[Knights landing processor])
         SIMD_FLAGS='-march=knl';;
       GEN)
         AC_DEFINE([GEN],[1],[generic vector code])
@@ -262,9 +204,6 @@ case ${ax_cv_cxx_compiler_vendor} in
                            [generic SIMD vector width (in bytes)])
         SIMD_GEN_WIDTH_MSG=" (width= $ac_gen_simd_width)"
         SIMD_FLAGS='';;
-      NEONv8)
-        AC_DEFINE([NEONV8],[1],[ARMv8 NEON])
-        SIMD_FLAGS='-march=armv8-a';;
       QPX|BGQ)
         AC_DEFINE([QPX],[1],[QPX intrinsics for BG/Q])
         SIMD_FLAGS='';;
@@ -293,7 +232,6 @@ case ${ax_cv_cxx_compiler_vendor} in
         SIMD_FLAGS='';;
       KNL)
         AC_DEFINE([AVX512],[1],[AVX512 intrinsics for Knights Landing])
-        AC_DEFINE([KNL],[1],[Knights landing processor])
         SIMD_FLAGS='-xmic-avx512';;
       GEN)
         AC_DEFINE([GEN],[1],[generic vector code])
@@ -331,41 +269,8 @@ case ${ac_PRECISION} in
      double)
        AC_DEFINE([GRID_DEFAULT_PRECISION_DOUBLE],[1],[GRID_DEFAULT_PRECISION is DOUBLE] )
      ;;
-     *)
-     AC_MSG_ERROR([${ac_PRECISION} unsupported --enable-precision option]);
-     ;;
 esac
 
-######################  Shared memory allocation technique under MPI3
-AC_ARG_ENABLE([shm],[AC_HELP_STRING([--enable-shm=shmget|shmopen|hugetlbfs],
-              [Select SHM allocation technique])],[ac_SHM=${enable_shm}],[ac_SHM=shmopen])
-
-case ${ac_SHM} in
-
-     shmget)
-     AC_DEFINE([GRID_MPI3_SHMGET],[1],[GRID_MPI3_SHMGET] )
-     ;;
-
-     shmopen)
-     AC_DEFINE([GRID_MPI3_SHMOPEN],[1],[GRID_MPI3_SHMOPEN] )
-     ;;
-
-     hugetlbfs)
-     AC_DEFINE([GRID_MPI3_SHMMMAP],[1],[GRID_MPI3_SHMMMAP] )
-     ;;
-
-     *)
-     AC_MSG_ERROR([${ac_SHM} unsupported --enable-shm option]);
-     ;;
-esac
-
-######################  Shared base path for SHMMMAP
-AC_ARG_ENABLE([shmpath],[AC_HELP_STRING([--enable-shmpath=path],
-              [Select SHM mmap base path for hugetlbfs])],
-	      [ac_SHMPATH=${enable_shmpath}],
-	      [ac_SHMPATH=/var/lib/hugetlbfs/pagesize-2MB/])
-AC_DEFINE_UNQUOTED([GRID_SHM_PATH],["$ac_SHMPATH"],[Path to a hugetlbfs filesystem for MMAPing])
-
 ############### communication type selection
 AC_ARG_ENABLE([comms],[AC_HELP_STRING([--enable-comms=none|mpi|mpi-auto|mpi3|mpi3-auto|shmem],
               [Select communications])],[ac_COMMS=${enable_comms}],[ac_COMMS=none])
@@ -375,14 +280,14 @@ case ${ac_COMMS} in
         AC_DEFINE([GRID_COMMS_NONE],[1],[GRID_COMMS_NONE] )
         comms_type='none'
      ;;
+     mpi3l*)
+       AC_DEFINE([GRID_COMMS_MPI3L],[1],[GRID_COMMS_MPI3L] )
+       comms_type='mpi3l'
+     ;;
      mpi3*)
         AC_DEFINE([GRID_COMMS_MPI3],[1],[GRID_COMMS_MPI3] )
         comms_type='mpi3'
      ;;
-     mpit)
-        AC_DEFINE([GRID_COMMS_MPIT],[1],[GRID_COMMS_MPIT] )
-        comms_type='mpit'
-     ;;
      mpi*)
         AC_DEFINE([GRID_COMMS_MPI],[1],[GRID_COMMS_MPI] )
         comms_type='mpi'
@@ -392,7 +297,7 @@ case ${ac_COMMS} in
         comms_type='shmem'
      ;;
      *)
-        AC_MSG_ERROR([${ac_COMMS} unsupported --enable-comms option]);
+        AC_MSG_ERROR([${ac_COMMS} unsupported --enable-comms option]); 
      ;;
 esac
 case ${ac_COMMS} in
@@ -410,13 +315,13 @@ esac
 AM_CONDITIONAL(BUILD_COMMS_SHMEM, [ test "${comms_type}X" == "shmemX" ])
 AM_CONDITIONAL(BUILD_COMMS_MPI,   [ test "${comms_type}X" == "mpiX" ])
 AM_CONDITIONAL(BUILD_COMMS_MPI3,  [ test "${comms_type}X" == "mpi3X" ] )
-AM_CONDITIONAL(BUILD_COMMS_MPIT,  [ test "${comms_type}X" == "mpitX" ] )
+AM_CONDITIONAL(BUILD_COMMS_MPI3L, [ test "${comms_type}X" == "mpi3lX" ] )
 AM_CONDITIONAL(BUILD_COMMS_NONE,  [ test "${comms_type}X" == "noneX" ])
 
 ############### RNG selection
 AC_ARG_ENABLE([rng],[AC_HELP_STRING([--enable-rng=ranlux48|mt19937|sitmo],\
 	            [Select Random Number Generator to be used])],\
-	            [ac_RNG=${enable_rng}],[ac_RNG=sitmo])
+	            [ac_RNG=${enable_rng}],[ac_RNG=ranlux48])
 
 case ${ac_RNG} in
      ranlux48)
@@ -429,7 +334,7 @@ case ${ac_RNG} in
       AC_DEFINE([RNG_SITMO],[1],[RNG_SITMO] )
      ;;
      *)
-      AC_MSG_ERROR([${ac_RNG} unsupported --enable-rng option]);
+      AC_MSG_ERROR([${ac_RNG} unsupported --enable-rng option]); 
      ;;
 esac
 
@@ -446,7 +351,7 @@ case ${ac_TIMERS} in
       AC_DEFINE([TIMERS_OFF],[1],[TIMERS_OFF] )
      ;;
      *)
-      AC_MSG_ERROR([${ac_TIMERS} unsupported --enable-timers option]);
+      AC_MSG_ERROR([${ac_TIMERS} unsupported --enable-timers option]); 
      ;;
 esac
 
@@ -458,7 +363,7 @@ case ${ac_CHROMA} in
      yes|no)
      ;;
      *)
-       AC_MSG_ERROR([${ac_CHROMA} unsupported --enable-chroma option]);
+       AC_MSG_ERROR([${ac_CHROMA} unsupported --enable-chroma option]); 
      ;;
 esac
 
@@ -479,67 +384,12 @@ DX_INIT_DOXYGEN([$PACKAGE_NAME], [doxygen.cfg])
 
 ############### Ouput
 cwd=`pwd -P`; cd ${srcdir}; abs_srcdir=`pwd -P`; cd ${cwd}
-GRID_CXXFLAGS="$AM_CXXFLAGS $CXXFLAGS"
-GRID_LDFLAGS="$AM_LDFLAGS $LDFLAGS"
-GRID_LIBS=$LIBS
-GRID_SHORT_SHA=`git rev-parse --short HEAD`
-GRID_SHA=`git rev-parse HEAD`
-GRID_BRANCH=`git rev-parse --abbrev-ref HEAD`
 AM_CXXFLAGS="-I${abs_srcdir}/include $AM_CXXFLAGS"
 AM_CFLAGS="-I${abs_srcdir}/include $AM_CFLAGS"
 AM_LDFLAGS="-L${cwd}/lib $AM_LDFLAGS"
 AC_SUBST([AM_CFLAGS])
 AC_SUBST([AM_CXXFLAGS])
 AC_SUBST([AM_LDFLAGS])
-AC_SUBST([GRID_CXXFLAGS])
-AC_SUBST([GRID_LDFLAGS])
-AC_SUBST([GRID_LIBS])
-AC_SUBST([GRID_SHA])
-AC_SUBST([GRID_BRANCH])
-
-git_commit=`cd $srcdir && ./scripts/configure.commit`
-
-echo "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-Summary of configuration for $PACKAGE v$VERSION
-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
------ GIT VERSION -------------------------------------
-$git_commit
------ PLATFORM ----------------------------------------
-architecture (build)        : $build_cpu
-os (build)                  : $build_os
-architecture (target)       : $target_cpu
-os (target)                 : $target_os
-compiler vendor             : ${ax_cv_cxx_compiler_vendor}
-compiler version            : ${ax_cv_gxx_version}
------ BUILD OPTIONS -----------------------------------
-SIMD                        : ${ac_SIMD}${SIMD_GEN_WIDTH_MSG}
-Threading                   : ${ac_openmp}
-Communications type         : ${comms_type}
-Shared memory allocator     : ${ac_SHM}
-Shared memory mmap path     : ${ac_SHMPATH}
-Default precision           : ${ac_PRECISION}
-Software FP16 conversion    : ${ac_SFW_FP16}
-RNG choice                  : ${ac_RNG}
-GMP                         : `if test "x$have_gmp" = xtrue; then echo yes; else echo no; fi`
-LAPACK                      : ${ac_LAPACK}
-FFTW                        : `if test "x$have_fftw" = xtrue; then echo yes; else echo no; fi`
-LIME (ILDG support)         : `if test "x$have_lime" = xtrue; then echo yes; else echo no; fi`
-HDF5                        : `if test "x$have_hdf5" = xtrue; then echo yes; else echo no; fi`
-build DOXYGEN documentation : `if test "$DX_FLAG_doc" = '1'; then echo yes; else echo no; fi`
------ BUILD FLAGS -------------------------------------
-CXXFLAGS:
-`echo ${AM_CXXFLAGS} ${CXXFLAGS} | tr ' ' '\n' | sed 's/^-/    -/g'`
-LDFLAGS:
-`echo ${AM_LDFLAGS} ${LDFLAGS} | tr ' ' '\n' | sed 's/^-/    -/g'`
-LIBS:
-`echo ${LIBS} | tr ' ' '\n' | sed 's/^-/    -/g'`
--------------------------------------------------------" > grid.configure.summary
-
-GRID_SUMMARY="`cat grid.configure.summary`"
-AM_SUBST_NOTMAKE([GRID_SUMMARY])
-AC_SUBST([GRID_SUMMARY])
-
-AC_CONFIG_FILES([grid-config], [chmod +x grid-config])
 AC_CONFIG_FILES(Makefile)
 AC_CONFIG_FILES(lib/Makefile)
 AC_CONFIG_FILES(tests/Makefile)
@@ -550,15 +400,42 @@ AC_CONFIG_FILES(tests/forces/Makefile)
 AC_CONFIG_FILES(tests/hadrons/Makefile)
 AC_CONFIG_FILES(tests/hmc/Makefile)
 AC_CONFIG_FILES(tests/solver/Makefile)
-AC_CONFIG_FILES(tests/smearing/Makefile)
 AC_CONFIG_FILES(tests/qdpxx/Makefile)
-AC_CONFIG_FILES(tests/testu01/Makefile)
 AC_CONFIG_FILES(benchmarks/Makefile)
 AC_CONFIG_FILES(extras/Makefile)
 AC_CONFIG_FILES(extras/Hadrons/Makefile)
 AC_OUTPUT
 
-echo ""
+echo "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-cat grid.configure.summary
+Summary of configuration for $PACKAGE v$VERSION
-echo ""
+~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 
+----- PLATFORM ----------------------------------------
+architecture (build)        : $build_cpu
+os (build)                  : $build_os
+architecture (target)       : $target_cpu
+os (target)                 : $target_os
+compiler vendor             : ${ax_cv_cxx_compiler_vendor}
+compiler version            : ${ax_cv_gxx_version}
+----- BUILD OPTIONS -----------------------------------
+SIMD                        : ${ac_SIMD}${SIMD_GEN_WIDTH_MSG}
+Threading                   : ${ac_openmp} 
+Communications type         : ${comms_type}
+Default precision           : ${ac_PRECISION}
+RNG choice                  : ${ac_RNG} 
+GMP                         : `if test "x$have_gmp" = xtrue; then echo yes; else echo no; fi`
+LAPACK                      : ${ac_LAPACK}
+FFTW                        : `if test "x$have_fftw" = xtrue; then echo yes; else echo no; fi`
+HDF5                        : `if test "x$have_hdf5" = xtrue; then echo yes; else echo no; fi`
+build DOXYGEN documentation : `if test "$DX_FLAG_doc" = '1'; then echo yes; else echo no; fi`
+----- BUILD FLAGS -------------------------------------
+CXXFLAGS:
+`echo ${AM_CXXFLAGS} ${CXXFLAGS} | tr ' ' '\n' | sed 's/^-/    -/g'`
+LDFLAGS:
+`echo ${AM_LDFLAGS} ${LDFLAGS} | tr ' ' '\n' | sed 's/^-/    -/g'`
+LIBS:
+`echo ${LIBS} | tr ' ' '\n' | sed 's/^-/    -/g'`
+-------------------------------------------------------" > config.summary
+echo ""
+cat config.summary
+echo ""

extras/Hadrons/Application.cc

@@ -162,8 +162,7 @@ void Application::saveParameterFile(const std::string parameterFileName)
 sizeString((size)*locVol_) << " (" << sizeString(size)  << "/site)"
 
 #define DEFINE_MEMPEAK \
-GeneticScheduler<unsigned int>::ObjFunc memPeak = \
+auto memPeak = [this](const std::vector<unsigned int> &program)\
-[this](const std::vector<unsigned int> &program)\
 {\
     unsigned int memPeak;\
     bool         msg;\

extras/Hadrons/Environment.cc

@@ -41,10 +41,9 @@ using namespace Hadrons;
 // constructor /////////////////////////////////////////////////////////////////
 Environment::Environment(void)
 {
-    dim_ = GridDefaultLatt();
+    nd_ = GridDefaultLatt().size();
-    nd_  = dim_.size();
     grid4d_.reset(SpaceTimeGrid::makeFourDimGrid(
-        dim_, GridDefaultSimd(nd_, vComplex::Nsimd()),
+        GridDefaultLatt(), GridDefaultSimd(nd_, vComplex::Nsimd()),
         GridDefaultMpi()));
     gridRb4d_.reset(SpaceTimeGrid::makeFourDimRedBlackGrid(grid4d_.get()));
     auto loc = getGrid()->LocalDimensions();
@@ -133,16 +132,6 @@ unsigned int Environment::getNd(void) const
     return nd_;
 }
 
-std::vector<int> Environment::getDim(void) const
-{
-    return dim_;
-}
-
-int Environment::getDim(const unsigned int mu) const
-{
-    return dim_[mu];
-}
-
 // random number generator /////////////////////////////////////////////////////
 void Environment::setSeed(const std::vector<int> &seed)
 {
@@ -282,21 +271,6 @@ std::string Environment::getModuleType(const std::string name) const
     return getModuleType(getModuleAddress(name));
 }
 
-std::string Environment::getModuleNamespace(const unsigned int address) const
-{
-    std::string type = getModuleType(address), ns;
-    
-    auto pos2 = type.rfind("::");
-    auto pos1 = type.rfind("::", pos2 - 2);
-    
-    return type.substr(pos1 + 2, pos2 - pos1 - 2);
-}
-
-std::string Environment::getModuleNamespace(const std::string name) const
-{
-    return getModuleNamespace(getModuleAddress(name));
-}
-
 bool Environment::hasModule(const unsigned int address) const
 {
     return (address < module_.size());
@@ -518,14 +492,7 @@ std::string Environment::getObjectType(const unsigned int address) const
 {
     if (hasRegisteredObject(address))
     {
-        if (object_[address].type)
+        return typeName(object_[address].type);
-        {
-            return typeName(object_[address].type);
-        }
-        else
-        {
-            return "<no type>";
-        }
     }
     else if (hasObject(address))
     {
@@ -565,23 +532,6 @@ Environment::Size Environment::getObjectSize(const std::string name) const
     return getObjectSize(getObjectAddress(name));
 }
 
-unsigned int Environment::getObjectModule(const unsigned int address) const
-{
-    if (hasObject(address))
-    {
-        return object_[address].module;
-    }
-    else
-    {
-        HADRON_ERROR("no object with address " + std::to_string(address));
-    }
-}
-
-unsigned int Environment::getObjectModule(const std::string name) const
-{
-    return getObjectModule(getObjectAddress(name));
-}
-
 unsigned int Environment::getObjectLs(const unsigned int address) const
 {
     if (hasRegisteredObject(address))

extras/Hadrons/Environment.hpp

@@ -106,8 +106,6 @@ public:
     void                    createGrid(const unsigned int Ls);
     GridCartesian *         getGrid(const unsigned int Ls = 1) const;
     GridRedBlackCartesian * getRbGrid(const unsigned int Ls = 1) const;
-    std::vector<int>        getDim(void) const;
-    int                     getDim(const unsigned int mu) const;
     unsigned int            getNd(void) const;
     // random number generator
     void                    setSeed(const std::vector<int> &seed);
@@ -133,8 +131,6 @@ public:
     std::string             getModuleName(const unsigned int address) const;
     std::string             getModuleType(const unsigned int address) const;
     std::string             getModuleType(const std::string name) const;
-    std::string             getModuleNamespace(const unsigned int address) const;
-    std::string             getModuleNamespace(const std::string name) const;
     bool                    hasModule(const unsigned int address) const;
     bool                    hasModule(const std::string name) const;
     Graph<unsigned int>     makeModuleGraph(void) const;
@@ -175,8 +171,6 @@ public:
     std::string             getObjectType(const std::string name) const;
     Size                    getObjectSize(const unsigned int address) const;
     Size                    getObjectSize(const std::string name) const;
-    unsigned int            getObjectModule(const unsigned int address) const;
-    unsigned int            getObjectModule(const std::string name) const;
     unsigned int            getObjectLs(const unsigned int address) const;
     unsigned int            getObjectLs(const std::string name) const;
     bool                    hasObject(const unsigned int address) const;
@@ -187,10 +181,6 @@ public:
     bool                    hasCreatedObject(const std::string name) const;
     bool                    isObject5d(const unsigned int address) const;
     bool                    isObject5d(const std::string name) const;
-    template <typename T>
-    bool                    isObjectOfType(const unsigned int address) const;
-    template <typename T>
-    bool                    isObjectOfType(const std::string name) const;
     Environment::Size       getTotalSize(void) const;
     void                    addOwnership(const unsigned int owner,
                                          const unsigned int property);
@@ -207,7 +197,6 @@ private:
     bool                                   dryRun_{false};
     unsigned int                           traj_, locVol_;
     // grids
-    std::vector<int>                       dim_;
     GridPt                                 grid4d_;
     std::map<unsigned int, GridPt>         grid5d_;
     GridRbPt                               gridRb4d_;
@@ -354,7 +343,7 @@ T * Environment::getObject(const unsigned int address) const
         else
         {
             HADRON_ERROR("object with address " + std::to_string(address) +
-                         " does not have type '" + typeName(&typeid(T)) +
+                         " does not have type '" + typeid(T).name() +
                          "' (has type '" + getObjectType(address) + "')");
         }
     }
@@ -391,37 +380,6 @@ T * Environment::createLattice(const std::string name)
     return createLattice<T>(getObjectAddress(name));
 }
 
-template <typename T>
-bool Environment::isObjectOfType(const unsigned int address) const
-{
-    if (hasRegisteredObject(address))
-    {
-        if (auto h = dynamic_cast<Holder<T> *>(object_[address].data.get()))
-        {
-            return true;
-        }
-        else
-        {
-            return false;
-        }
-    }
-    else if (hasObject(address))
-    {
-        HADRON_ERROR("object with address " + std::to_string(address) +
-                     " exists but is not registered");
-    }
-    else
-    {
-        HADRON_ERROR("no object with address " + std::to_string(address));
-    }
-}
-
-template <typename T>
-bool Environment::isObjectOfType(const std::string name) const
-{
-    return isObjectOfType<T>(getObjectAddress(name));
-}
-
 END_HADRONS_NAMESPACE
 
 #endif // Hadrons_Environment_hpp_

extras/Hadrons/Global.hpp

@@ -51,43 +51,23 @@ using Grid::operator<<;
  * error with GCC 5 (clang & GCC 6 compile fine without it).
  */
 
+// FIXME: find a way to do that in a more general fashion
 #ifndef FIMPL
 #define FIMPL WilsonImplR
 #endif
-#ifndef SIMPL
-#define SIMPL ScalarImplCR
-#endif
 
 BEGIN_HADRONS_NAMESPACE
 
 // type aliases
-#define FERM_TYPE_ALIASES(FImpl, suffix)\
+#define TYPE_ALIASES(FImpl, suffix)\
 typedef FermionOperator<FImpl>                       FMat##suffix;             \
 typedef typename FImpl::FermionField                 FermionField##suffix;     \
 typedef typename FImpl::PropagatorField              PropagatorField##suffix;  \
 typedef typename FImpl::SitePropagator               SitePropagator##suffix;   \
-typedef std::vector<typename FImpl::SitePropagator::scalar_object>             \
+typedef typename FImpl::DoubledGaugeField            DoubledGaugeField##suffix;\
-                                                     SlicedPropagator##suffix;
+typedef std::function<void(FermionField##suffix &,                             \
-
-#define GAUGE_TYPE_ALIASES(FImpl, suffix)\
-typedef typename FImpl::DoubledGaugeField DoubledGaugeField##suffix;
-
-#define SCALAR_TYPE_ALIASES(SImpl, suffix)\
-typedef typename SImpl::Field ScalarField##suffix;\
-typedef typename SImpl::Field PropagatorField##suffix;
-
-#define SOLVER_TYPE_ALIASES(FImpl, suffix)\
-typedef std::function<void(FermionField##suffix &,\
                       const FermionField##suffix &)> SolverFn##suffix;
 
-#define SINK_TYPE_ALIASES(suffix)\
-typedef std::function<SlicedPropagator##suffix(const PropagatorField##suffix &)> SinkFn##suffix;
-
-#define FGS_TYPE_ALIASES(FImpl, suffix)\
-FERM_TYPE_ALIASES(FImpl, suffix)\
-GAUGE_TYPE_ALIASES(FImpl, suffix)\
-SOLVER_TYPE_ALIASES(FImpl, suffix)
-
 // logger
 class HadronsLogger: public Logger
 {
@@ -165,15 +145,6 @@ std::string typeName(void)
     return typeName(typeIdPt<T>());
 }
 
-// default writers/readers
-#ifdef HAVE_HDF5
-typedef Hdf5Reader CorrReader;
-typedef Hdf5Writer CorrWriter;
-#else
-typedef XmlReader CorrReader;
-typedef XmlWriter CorrWriter;
-#endif
-
 END_HADRONS_NAMESPACE
 
 #endif // Hadrons_Global_hpp_

extras/Hadrons/Modules.hpp

@@ -1,25 +1,40 @@
+/*************************************************************************************
+
+Grid physics library, www.github.com/paboyle/Grid 
+
+Source file: extras/Hadrons/Modules.hpp
+
+Copyright (C) 2015
+Copyright (C) 2016
+
+Author: Antonin Portelli <antonin.portelli@me.com>
+
+This program is free software; you can redistribute it and/or modify
+it under the terms of the GNU General Public License as published by
+the Free Software Foundation; either version 2 of the License, or
+(at your option) any later version.
+
+This program is distributed in the hope that it will be useful,
+but WITHOUT ANY WARRANTY; without even the implied warranty of
+MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+GNU General Public License for more details.
+
+You should have received a copy of the GNU General Public License along
+with this program; if not, write to the Free Software Foundation, Inc.,
+51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
+
+See the full license in the file "LICENSE" in the top level distribution directory
+*************************************************************************************/
+/*  END LEGAL */
 #include <Grid/Hadrons/Modules/MAction/DWF.hpp>
 #include <Grid/Hadrons/Modules/MAction/Wilson.hpp>
 #include <Grid/Hadrons/Modules/MContraction/Baryon.hpp>
-#include <Grid/Hadrons/Modules/MContraction/DiscLoop.hpp>
-#include <Grid/Hadrons/Modules/MContraction/Gamma3pt.hpp>
 #include <Grid/Hadrons/Modules/MContraction/Meson.hpp>
-#include <Grid/Hadrons/Modules/MContraction/WeakHamiltonian.hpp>
-#include <Grid/Hadrons/Modules/MContraction/WeakHamiltonianEye.hpp>
-#include <Grid/Hadrons/Modules/MContraction/WeakHamiltonianNonEye.hpp>
-#include <Grid/Hadrons/Modules/MContraction/WeakNeutral4ptDisc.hpp>
-#include <Grid/Hadrons/Modules/MFermion/GaugeProp.hpp>
 #include <Grid/Hadrons/Modules/MGauge/Load.hpp>
 #include <Grid/Hadrons/Modules/MGauge/Random.hpp>
-#include <Grid/Hadrons/Modules/MGauge/StochEm.hpp>
 #include <Grid/Hadrons/Modules/MGauge/Unit.hpp>
-#include <Grid/Hadrons/Modules/MLoop/NoiseLoop.hpp>
-#include <Grid/Hadrons/Modules/MScalar/ChargedProp.hpp>
-#include <Grid/Hadrons/Modules/MScalar/FreeProp.hpp>
-#include <Grid/Hadrons/Modules/MScalar/Scalar.hpp>
-#include <Grid/Hadrons/Modules/MSink/Point.hpp>
 #include <Grid/Hadrons/Modules/MSolver/RBPrecCG.hpp>
 #include <Grid/Hadrons/Modules/MSource/Point.hpp>
 #include <Grid/Hadrons/Modules/MSource/SeqGamma.hpp>
-#include <Grid/Hadrons/Modules/MSource/Wall.hpp>
 #include <Grid/Hadrons/Modules/MSource/Z2.hpp>
+#include <Grid/Hadrons/Modules/Quark.hpp>

extras/Hadrons/Modules/MAction/DWF.hpp

@@ -27,8 +27,8 @@ See the full license in the file "LICENSE" in the top level distribution directo
 *************************************************************************************/
 /*  END LEGAL */
 
-#ifndef Hadrons_MAction_DWF_hpp_
+#ifndef Hadrons_DWF_hpp_
-#define Hadrons_MAction_DWF_hpp_
+#define Hadrons_DWF_hpp_
 
 #include <Grid/Hadrons/Global.hpp>
 #include <Grid/Hadrons/Module.hpp>
@@ -48,15 +48,14 @@ public:
                                     std::string, gauge,
                                     unsigned int, Ls,
                                     double      , mass,
-                                    double      , M5,
+                                    double      , M5);
-                                    std::string , boundary);
 };
 
 template <typename FImpl>
 class TDWF: public Module<DWFPar>
 {
 public:
-    FGS_TYPE_ALIASES(FImpl,);
+    TYPE_ALIASES(FImpl,);
 public:
     // constructor
     TDWF(const std::string name);
@@ -117,19 +116,14 @@ void TDWF<FImpl>::execute(void)
                  << par().mass << ", M5= " << par().M5 << " and Ls= "
                  << par().Ls << " using gauge field '" << par().gauge << "'"
                  << std::endl;
-    LOG(Message) << "Fermion boundary conditions: " << par().boundary 
-                 << std::endl;
     env().createGrid(par().Ls);
     auto &U      = *env().template getObject<LatticeGaugeField>(par().gauge);
     auto &g4     = *env().getGrid();
     auto &grb4   = *env().getRbGrid();
     auto &g5     = *env().getGrid(par().Ls);
     auto &grb5   = *env().getRbGrid(par().Ls);
-    std::vector<Complex> boundary = strToVec<Complex>(par().boundary);
-    typename DomainWallFermion<FImpl>::ImplParams implParams(boundary);
     FMat *fMatPt = new DomainWallFermion<FImpl>(U, g5, grb5, g4, grb4,
-                                                par().mass, par().M5,
+                                                par().mass, par().M5);
-                                                implParams);
     env().setObject(getName(), fMatPt);
 }
 
@@ -137,4 +131,4 @@ END_MODULE_NAMESPACE
 
 END_HADRONS_NAMESPACE
 
-#endif // Hadrons_MAction_DWF_hpp_
+#endif // Hadrons_DWF_hpp_

extras/Hadrons/Modules/MAction/Wilson.hpp

@@ -27,8 +27,8 @@ See the full license in the file "LICENSE" in the top level distribution directo
 *************************************************************************************/
 /*  END LEGAL */
 
-#ifndef Hadrons_MAction_Wilson_hpp_
+#ifndef Hadrons_Wilson_hpp_
-#define Hadrons_MAction_Wilson_hpp_
+#define Hadrons_Wilson_hpp_
 
 #include <Grid/Hadrons/Global.hpp>
 #include <Grid/Hadrons/Module.hpp>
@@ -46,15 +46,14 @@ class WilsonPar: Serializable
 public:
     GRID_SERIALIZABLE_CLASS_MEMBERS(WilsonPar,
                                     std::string, gauge,
-                                    double     , mass,
+                                    double     , mass);
-                                    std::string, boundary);
 };
 
 template <typename FImpl>
 class TWilson: public Module<WilsonPar>
 {
 public:
-    FGS_TYPE_ALIASES(FImpl,);
+    TYPE_ALIASES(FImpl,);
 public:
     // constructor
     TWilson(const std::string name);
@@ -113,15 +112,10 @@ void TWilson<FImpl>::execute()
 {
     LOG(Message) << "Setting up TWilson fermion matrix with m= " << par().mass
                  << " using gauge field '" << par().gauge << "'" << std::endl;
-    LOG(Message) << "Fermion boundary conditions: " << par().boundary 
-                 << std::endl;
     auto &U      = *env().template getObject<LatticeGaugeField>(par().gauge);
     auto &grid   = *env().getGrid();
     auto &gridRb = *env().getRbGrid();
-    std::vector<Complex> boundary = strToVec<Complex>(par().boundary);
+    FMat *fMatPt = new WilsonFermion<FImpl>(U, grid, gridRb, par().mass);
-    typename WilsonFermion<FImpl>::ImplParams implParams(boundary);
-    FMat *fMatPt = new WilsonFermion<FImpl>(U, grid, gridRb, par().mass,
-                                            implParams);
     env().setObject(getName(), fMatPt);
 }
 

extras/Hadrons/Modules/MContraction/Baryon.hpp

@@ -27,8 +27,8 @@ See the full license in the file "LICENSE" in the top level distribution directo
 *************************************************************************************/
 /*  END LEGAL */
 
-#ifndef Hadrons_MContraction_Baryon_hpp_
+#ifndef Hadrons_Baryon_hpp_
-#define Hadrons_MContraction_Baryon_hpp_
+#define Hadrons_Baryon_hpp_
 
 #include <Grid/Hadrons/Global.hpp>
 #include <Grid/Hadrons/Module.hpp>
@@ -55,9 +55,9 @@ template <typename FImpl1, typename FImpl2, typename FImpl3>
 class TBaryon: public Module<BaryonPar>
 {
 public:
-    FERM_TYPE_ALIASES(FImpl1, 1);
+    TYPE_ALIASES(FImpl1, 1);
-    FERM_TYPE_ALIASES(FImpl2, 2);
+    TYPE_ALIASES(FImpl2, 2);
-    FERM_TYPE_ALIASES(FImpl3, 3);
+    TYPE_ALIASES(FImpl3, 3);
     class Result: Serializable
     {
     public:
@@ -112,7 +112,7 @@ void TBaryon<FImpl1, FImpl2, FImpl3>::execute(void)
                  << " quarks '" << par().q1 << "', '" << par().q2 << "', and '"
                  << par().q3 << "'" << std::endl;
     
-    CorrWriter             writer(par().output);
+    XmlWriter             writer(par().output);
     PropagatorField1      &q1 = *env().template getObject<PropagatorField1>(par().q1);
     PropagatorField2      &q2 = *env().template getObject<PropagatorField2>(par().q2);
     PropagatorField3      &q3 = *env().template getObject<PropagatorField3>(par().q2);
@@ -121,11 +121,11 @@ void TBaryon<FImpl1, FImpl2, FImpl3>::execute(void)
     
     // FIXME: do contractions
     
-    // write(writer, "meson", result);
+    write(writer, "meson", result);
 }
 
 END_MODULE_NAMESPACE
 
 END_HADRONS_NAMESPACE
 
-#endif // Hadrons_MContraction_Baryon_hpp_
+#endif // Hadrons_Baryon_hpp_

extras/Hadrons/Modules/MContraction/DiscLoop.hpp

@@ -1,144 +0,0 @@
-/*************************************************************************************
-
-Grid physics library, www.github.com/paboyle/Grid 
-
-Source file: extras/Hadrons/Modules/MContraction/DiscLoop.hpp
-
-Copyright (C) 2017
-
-Author: Andrew Lawson    <andrew.lawson1991@gmail.com>
-
-This program is free software; you can redistribute it and/or modify
-it under the terms of the GNU General Public License as published by
-the Free Software Foundation; either version 2 of the License, or
-(at your option) any later version.
-
-This program is distributed in the hope that it will be useful,
-but WITHOUT ANY WARRANTY; without even the implied warranty of
-MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-GNU General Public License for more details.
-
-You should have received a copy of the GNU General Public License along
-with this program; if not, write to the Free Software Foundation, Inc.,
-51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
-
-See the full license in the file "LICENSE" in the top level distribution directory
-*************************************************************************************/
-/*  END LEGAL */
-
-#ifndef Hadrons_MContraction_DiscLoop_hpp_
-#define Hadrons_MContraction_DiscLoop_hpp_
-
-#include <Grid/Hadrons/Global.hpp>
-#include <Grid/Hadrons/Module.hpp>
-#include <Grid/Hadrons/ModuleFactory.hpp>
-
-BEGIN_HADRONS_NAMESPACE
-
-/******************************************************************************
- *                                DiscLoop                                    *
- ******************************************************************************/
-BEGIN_MODULE_NAMESPACE(MContraction)
-
-class DiscLoopPar: Serializable
-{
-public:
-    GRID_SERIALIZABLE_CLASS_MEMBERS(DiscLoopPar,
-                                    std::string,    q_loop,
-                                    Gamma::Algebra, gamma,
-                                    std::string,    output);
-};
-
-template <typename FImpl>
-class TDiscLoop: public Module<DiscLoopPar>
-{
-    FERM_TYPE_ALIASES(FImpl,);
-    class Result: Serializable
-    {
-    public:
-        GRID_SERIALIZABLE_CLASS_MEMBERS(Result,
-                                        Gamma::Algebra, gamma,
-                                        std::vector<Complex>, corr);
-    };
-public:
-    // constructor
-    TDiscLoop(const std::string name);
-    // destructor
-    virtual ~TDiscLoop(void) = default;
-    // dependency relation
-    virtual std::vector<std::string> getInput(void);
-    virtual std::vector<std::string> getOutput(void);
-    // setup
-    virtual void setup(void);
-    // execution
-    virtual void execute(void);
-};
-
-MODULE_REGISTER_NS(DiscLoop, TDiscLoop<FIMPL>, MContraction);
-
-/******************************************************************************
- *                       TDiscLoop implementation                             *
- ******************************************************************************/
-// constructor /////////////////////////////////////////////////////////////////
-template <typename FImpl>
-TDiscLoop<FImpl>::TDiscLoop(const std::string name)
-: Module<DiscLoopPar>(name)
-{}
-
-// dependencies/products ///////////////////////////////////////////////////////
-template <typename FImpl>
-std::vector<std::string> TDiscLoop<FImpl>::getInput(void)
-{
-    std::vector<std::string> in = {par().q_loop};
-    
-    return in;
-}
-
-template <typename FImpl>
-std::vector<std::string> TDiscLoop<FImpl>::getOutput(void)
-{
-    std::vector<std::string> out = {getName()};
-    
-    return out;
-}
-
-// setup ///////////////////////////////////////////////////////////////////////
-template <typename FImpl>
-void TDiscLoop<FImpl>::setup(void)
-{
-    
-}
-
-// execution ///////////////////////////////////////////////////////////////////
-template <typename FImpl>
-void TDiscLoop<FImpl>::execute(void)
-{
-    LOG(Message) << "Computing disconnected loop contraction '" << getName() 
-                 << "' using '" << par().q_loop << "' with " << par().gamma 
-                 << " insertion." << std::endl;
-
-    CorrWriter            writer(par().output);
-    PropagatorField       &q_loop = *env().template getObject<PropagatorField>(par().q_loop);
-    LatticeComplex        c(env().getGrid());
-    Gamma                 gamma(par().gamma);
-    std::vector<TComplex> buf;
-    Result                result;
-
-    c = trace(gamma*q_loop);
-    sliceSum(c, buf, Tp);
-
-    result.gamma = par().gamma;
-    result.corr.resize(buf.size());
-    for (unsigned int t = 0; t < buf.size(); ++t)
-    {
-        result.corr[t] = TensorRemove(buf[t]);
-    }
-
-    write(writer, "disc", result);
-}
-
-END_MODULE_NAMESPACE
-
-END_HADRONS_NAMESPACE
-
-#endif // Hadrons_MContraction_DiscLoop_hpp_

extras/Hadrons/Modules/MContraction/Gamma3pt.hpp

@@ -1,170 +0,0 @@
-/*************************************************************************************
-
-Grid physics library, www.github.com/paboyle/Grid 
-
-Source file: extras/Hadrons/Modules/MContraction/Gamma3pt.hpp
-
-Copyright (C) 2017
-
-Author: Andrew Lawson    <andrew.lawson1991@gmail.com>
-
-This program is free software; you can redistribute it and/or modify
-it under the terms of the GNU General Public License as published by
-the Free Software Foundation; either version 2 of the License, or
-(at your option) any later version.
-
-This program is distributed in the hope that it will be useful,
-but WITHOUT ANY WARRANTY; without even the implied warranty of
-MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-GNU General Public License for more details.
-
-You should have received a copy of the GNU General Public License along
-with this program; if not, write to the Free Software Foundation, Inc.,
-51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
-
-See the full license in the file "LICENSE" in the top level distribution directory
-*************************************************************************************/
-/*  END LEGAL */
-
-#ifndef Hadrons_MContraction_Gamma3pt_hpp_
-#define Hadrons_MContraction_Gamma3pt_hpp_
-
-#include <Grid/Hadrons/Global.hpp>
-#include <Grid/Hadrons/Module.hpp>
-#include <Grid/Hadrons/ModuleFactory.hpp>
-
-BEGIN_HADRONS_NAMESPACE
-
-/*
- * 3pt contraction with gamma matrix insertion.
- *
- * Schematic:
- *
- *             q2           q3
- *        /----<------*------<----¬
- *       /          gamma          \
- *      /                           \
- *   i *                            * f
- *      \                          /
- *       \                        /
- *        \----------->----------/
- *                   q1
- *
- *      trace(g5*q1*adj(q2)*g5*gamma*q3)
- */
-
-/******************************************************************************
- *                               Gamma3pt                                     *
- ******************************************************************************/
-BEGIN_MODULE_NAMESPACE(MContraction)
-
-class Gamma3ptPar: Serializable
-{
-public:
-    GRID_SERIALIZABLE_CLASS_MEMBERS(Gamma3ptPar,
-                                    std::string,    q1,
-                                    std::string,    q2,
-                                    std::string,    q3,
-                                    Gamma::Algebra, gamma,
-                                    std::string,    output);
-};
-
-template <typename FImpl1, typename FImpl2, typename FImpl3>
-class TGamma3pt: public Module<Gamma3ptPar>
-{
-    FERM_TYPE_ALIASES(FImpl1, 1);
-    FERM_TYPE_ALIASES(FImpl2, 2);
-    FERM_TYPE_ALIASES(FImpl3, 3);
-    class Result: Serializable
-    {
-    public:
-        GRID_SERIALIZABLE_CLASS_MEMBERS(Result,
-                                        Gamma::Algebra, gamma,
-                                        std::vector<Complex>, corr);
-    };
-public:
-    // constructor
-    TGamma3pt(const std::string name);
-    // destructor
-    virtual ~TGamma3pt(void) = default;
-    // dependency relation
-    virtual std::vector<std::string> getInput(void);
-    virtual std::vector<std::string> getOutput(void);
-    // setup
-    virtual void setup(void);
-    // execution
-    virtual void execute(void);
-};
-
-MODULE_REGISTER_NS(Gamma3pt, ARG(TGamma3pt<FIMPL, FIMPL, FIMPL>), MContraction);
-
-/******************************************************************************
- *                       TGamma3pt implementation                             *
- ******************************************************************************/
-// constructor /////////////////////////////////////////////////////////////////
-template <typename FImpl1, typename FImpl2, typename FImpl3>
-TGamma3pt<FImpl1, FImpl2, FImpl3>::TGamma3pt(const std::string name)
-: Module<Gamma3ptPar>(name)
-{}
-
-// dependencies/products ///////////////////////////////////////////////////////
-template <typename FImpl1, typename FImpl2, typename FImpl3>
-std::vector<std::string> TGamma3pt<FImpl1, FImpl2, FImpl3>::getInput(void)
-{
-    std::vector<std::string> in = {par().q1, par().q2, par().q3};
-    
-    return in;
-}
-
-template <typename FImpl1, typename FImpl2, typename FImpl3>
-std::vector<std::string> TGamma3pt<FImpl1, FImpl2, FImpl3>::getOutput(void)
-{
-    std::vector<std::string> out = {getName()};
-    
-    return out;
-}
-
-// setup ///////////////////////////////////////////////////////////////////////
-template <typename FImpl1, typename FImpl2, typename FImpl3>
-void TGamma3pt<FImpl1, FImpl2, FImpl3>::setup(void)
-{
-    
-}
-
-// execution ///////////////////////////////////////////////////////////////////
-template <typename FImpl1, typename FImpl2, typename FImpl3>
-void TGamma3pt<FImpl1, FImpl2, FImpl3>::execute(void)
-{
-    LOG(Message) << "Computing 3pt contractions '" << getName() << "' using"
-                 << " quarks '" << par().q1 << "', '" << par().q2 << "' and '"
-                 << par().q3 << "', with " << par().gamma << " insertion." 
-                 << std::endl;
-
-    CorrWriter            writer(par().output);
-    PropagatorField1      &q1 = *env().template getObject<PropagatorField1>(par().q1);
-    PropagatorField2      &q2 = *env().template getObject<PropagatorField2>(par().q2);
-    PropagatorField3      &q3 = *env().template getObject<PropagatorField3>(par().q3);
-    LatticeComplex        c(env().getGrid());
-    Gamma                 g5(Gamma::Algebra::Gamma5);
-    Gamma                 gamma(par().gamma);
-    std::vector<TComplex> buf;
-    Result                result;
-
-    c = trace(g5*q1*adj(q2)*(g5*gamma)*q3);
-    sliceSum(c, buf, Tp);
-
-    result.gamma = par().gamma;
-    result.corr.resize(buf.size());
-    for (unsigned int t = 0; t < buf.size(); ++t)
-    {
-        result.corr[t] = TensorRemove(buf[t]);
-    }
-
-    write(writer, "gamma3pt", result);
-}
-
-END_MODULE_NAMESPACE
-
-END_HADRONS_NAMESPACE
-
-#endif // Hadrons_MContraction_Gamma3pt_hpp_

extras/Hadrons/Modules/MContraction/Meson.hpp

@@ -6,10 +6,8 @@ Source file: extras/Hadrons/Modules/MContraction/Meson.hpp
 
 Copyright (C) 2015
 Copyright (C) 2016
-Copyright (C) 2017
 
 Author: Antonin Portelli <antonin.portelli@me.com>
-        Andrew Lawson    <andrew.lawson1991@gmail.com>
 
 This program is free software; you can redistribute it and/or modify
 it under the terms of the GNU General Public License as published by
@@ -29,8 +27,8 @@ See the full license in the file "LICENSE" in the top level distribution directo
 *************************************************************************************/
 /*  END LEGAL */
 
-#ifndef Hadrons_MContraction_Meson_hpp_
+#ifndef Hadrons_Meson_hpp_
-#define Hadrons_MContraction_Meson_hpp_
+#define Hadrons_Meson_hpp_
 
 #include <Grid/Hadrons/Global.hpp>
 #include <Grid/Hadrons/Module.hpp>
@@ -38,56 +36,32 @@ See the full license in the file "LICENSE" in the top level distribution directo
 
 BEGIN_HADRONS_NAMESPACE
 
-/*
- 
- Meson contractions
- -----------------------------
- 
- * options:
- - q1: input propagator 1 (string)
- - q2: input propagator 2 (string)
- - gammas: gamma products to insert at sink & source, pairs of gamma matrices 
-           (space-separated strings) in angled brackets (i.e. <g_sink g_src>),
-           in a sequence (e.g. "<Gamma5 Gamma5><Gamma5 GammaT>").
-
-           Special values: "all" - perform all possible contractions.
- - mom: momentum insertion, space-separated float sequence (e.g ".1 .2 1. 0."),
-        given as multiples of (2*pi) / L.
-*/
-
 /******************************************************************************
  *                                TMeson                                       *
  ******************************************************************************/
 BEGIN_MODULE_NAMESPACE(MContraction)
 
-typedef std::pair<Gamma::Algebra, Gamma::Algebra> GammaPair;
-
 class MesonPar: Serializable
 {
 public:
     GRID_SERIALIZABLE_CLASS_MEMBERS(MesonPar,
-                                    std::string, q1,
+                                    std::string,    q1,
-                                    std::string, q2,
+                                    std::string,    q2,
-                                    std::string, gammas,
+                                    std::string,    output,
-                                    std::string, sink,
+                                    Gamma::Algebra, gammaSource,
-                                    std::string, output);
+                                    Gamma::Algebra, gammaSink);
 };
 
 template <typename FImpl1, typename FImpl2>
 class TMeson: public Module<MesonPar>
 {
 public:
-    FERM_TYPE_ALIASES(FImpl1, 1);
+    TYPE_ALIASES(FImpl1, 1);
-    FERM_TYPE_ALIASES(FImpl2, 2);
+    TYPE_ALIASES(FImpl2, 2);
-    FERM_TYPE_ALIASES(ScalarImplCR, Scalar);
-    SINK_TYPE_ALIASES(Scalar);
     class Result: Serializable
     {
     public:
-        GRID_SERIALIZABLE_CLASS_MEMBERS(Result,
+        GRID_SERIALIZABLE_CLASS_MEMBERS(Result, std::vector<Complex>, corr);
-                                        Gamma::Algebra, gamma_snk,
-                                        Gamma::Algebra, gamma_src,
-                                        std::vector<Complex>, corr);
     };
 public:
     // constructor
@@ -97,7 +71,6 @@ public:
     // dependencies/products
     virtual std::vector<std::string> getInput(void);
     virtual std::vector<std::string> getOutput(void);
-    virtual void parseGammaString(std::vector<GammaPair> &gammaList);
     // execution
     virtual void execute(void);
 };
@@ -117,7 +90,7 @@ TMeson<FImpl1, FImpl2>::TMeson(const std::string name)
 template <typename FImpl1, typename FImpl2>
 std::vector<std::string> TMeson<FImpl1, FImpl2>::getInput(void)
 {
-    std::vector<std::string> input = {par().q1, par().q2, par().sink};
+    std::vector<std::string> input = {par().q1, par().q2};
     
     return input;
 }
@@ -130,35 +103,7 @@ std::vector<std::string> TMeson<FImpl1, FImpl2>::getOutput(void)
     return output;
 }
 
-template <typename FImpl1, typename FImpl2>
-void TMeson<FImpl1, FImpl2>::parseGammaString(std::vector<GammaPair> &gammaList)
-{
-    gammaList.clear();
-    // Determine gamma matrices to insert at source/sink.
-    if (par().gammas.compare("all") == 0)
-    {
-        // Do all contractions.
-        for (unsigned int i = 1; i < Gamma::nGamma; i += 2)
-        {
-            for (unsigned int j = 1; j < Gamma::nGamma; j += 2)
-            {
-                gammaList.push_back(std::make_pair((Gamma::Algebra)i, 
-                                                   (Gamma::Algebra)j));
-            }
-        }
-    }
-    else
-    {
-        // Parse individual contractions from input string.
-        gammaList = strToVec<GammaPair>(par().gammas);
-    }
-}
-
-
 // execution ///////////////////////////////////////////////////////////////////
-#define mesonConnected(q1, q2, gSnk, gSrc) \
-(g5*(gSnk))*(q1)*(adj(gSrc)*g5)*adj(q2)
-
 template <typename FImpl1, typename FImpl2>
 void TMeson<FImpl1, FImpl2>::execute(void)
 {
@@ -166,73 +111,21 @@ void TMeson<FImpl1, FImpl2>::execute(void)
                  << " quarks '" << par().q1 << "' and '" << par().q2 << "'"
                  << std::endl;
     
-    CorrWriter             writer(par().output);
+    XmlWriter             writer(par().output);
-    std::vector<TComplex>  buf;
+    PropagatorField1      &q1 = *env().template getObject<PropagatorField1>(par().q1);
-    std::vector<Result>    result;
+    PropagatorField2      &q2 = *env().template getObject<PropagatorField2>(par().q2);
-    Gamma                  g5(Gamma::Algebra::Gamma5);
+    LatticeComplex        c(env().getGrid());
-    std::vector<GammaPair> gammaList;
+    Gamma                 gSrc(par().gammaSource), gSnk(par().gammaSink);
-    int                    nt = env().getDim(Tp);
+    Gamma                 g5(Gamma::Algebra::Gamma5);
+    std::vector<TComplex> buf;
+    Result                result;
     
-    parseGammaString(gammaList);
+    c = trace(gSnk*q1*adj(gSrc)*g5*adj(q2)*g5);
-    result.resize(gammaList.size());
+    sliceSum(c, buf, Tp);
-    for (unsigned int i = 0; i < result.size(); ++i)
+    result.corr.resize(buf.size());
+    for (unsigned int t = 0; t < buf.size(); ++t)
     {
-        result[i].gamma_snk = gammaList[i].first;
+        result.corr[t] = TensorRemove(buf[t]);
-        result[i].gamma_src = gammaList[i].second;
-        result[i].corr.resize(nt);
-    }
-    if (env().template isObjectOfType<SlicedPropagator1>(par().q1) and
-        env().template isObjectOfType<SlicedPropagator2>(par().q2))
-    {
-        SlicedPropagator1 &q1 = *env().template getObject<SlicedPropagator1>(par().q1);
-        SlicedPropagator2 &q2 = *env().template getObject<SlicedPropagator2>(par().q2);
-        
-        LOG(Message) << "(propagator already sinked)" << std::endl;
-        for (unsigned int i = 0; i < result.size(); ++i)
-        {
-            Gamma gSnk(gammaList[i].first);
-            Gamma gSrc(gammaList[i].second);
-            
-            for (unsigned int t = 0; t < buf.size(); ++t)
-            {
-                result[i].corr[t] = TensorRemove(trace(mesonConnected(q1[t], q2[t], gSnk, gSrc)));
-            }
-        }
-    }
-    else
-    {
-        PropagatorField1 &q1   = *env().template getObject<PropagatorField1>(par().q1);
-        PropagatorField2 &q2   = *env().template getObject<PropagatorField2>(par().q2);
-        LatticeComplex   c(env().getGrid());
-        
-        LOG(Message) << "(using sink '" << par().sink << "')" << std::endl;
-        for (unsigned int i = 0; i < result.size(); ++i)
-        {
-            Gamma       gSnk(gammaList[i].first);
-            Gamma       gSrc(gammaList[i].second);
-            std::string ns;
-                
-            ns = env().getModuleNamespace(env().getObjectModule(par().sink));
-            if (ns == "MSource")
-            {
-                PropagatorField1 &sink =
-                    *env().template getObject<PropagatorField1>(par().sink);
-                
-                c = trace(mesonConnected(q1, q2, gSnk, gSrc)*sink);
-                sliceSum(c, buf, Tp);
-            }
-            else if (ns == "MSink")
-            {
-                SinkFnScalar &sink = *env().template getObject<SinkFnScalar>(par().sink);
-                
-                c   = trace(mesonConnected(q1, q2, gSnk, gSrc));
-                buf = sink(c);
-            }
-            for (unsigned int t = 0; t < buf.size(); ++t)
-            {
-                result[i].corr[t] = TensorRemove(buf[t]);
-            }
-        }
     }
     write(writer, "meson", result);
 }
@@ -241,4 +134,4 @@ END_MODULE_NAMESPACE
 
 END_HADRONS_NAMESPACE
 
-#endif // Hadrons_MContraction_Meson_hpp_
+#endif // Hadrons_Meson_hpp_

extras/Hadrons/Modules/MContraction/WeakHamiltonian.hpp

@@ -1,114 +0,0 @@
-/*************************************************************************************
-
-Grid physics library, www.github.com/paboyle/Grid 
-
-Source file: extras/Hadrons/Modules/MContraction/WeakHamiltonian.hpp
-
-Copyright (C) 2017
-
-Author: Andrew Lawson    <andrew.lawson1991@gmail.com>
-
-This program is free software; you can redistribute it and/or modify
-it under the terms of the GNU General Public License as published by
-the Free Software Foundation; either version 2 of the License, or
-(at your option) any later version.
-
-This program is distributed in the hope that it will be useful,
-but WITHOUT ANY WARRANTY; without even the implied warranty of
-MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-GNU General Public License for more details.
-
-You should have received a copy of the GNU General Public License along
-with this program; if not, write to the Free Software Foundation, Inc.,
-51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
-
-See the full license in the file "LICENSE" in the top level distribution directory
-*************************************************************************************/
-/*  END LEGAL */
-
-#ifndef Hadrons_MContraction_WeakHamiltonian_hpp_
-#define Hadrons_MContraction_WeakHamiltonian_hpp_
-
-#include <Grid/Hadrons/Global.hpp>
-#include <Grid/Hadrons/Module.hpp>
-#include <Grid/Hadrons/ModuleFactory.hpp>
-
-BEGIN_HADRONS_NAMESPACE
-
-/******************************************************************************
- *                         WeakHamiltonian                                    *
- ******************************************************************************/
-BEGIN_MODULE_NAMESPACE(MContraction)
-
-/*******************************************************************************
- * Utilities for contractions involving the Weak Hamiltonian.
- ******************************************************************************/
-//// Sum and store correlator.
-#define MAKE_DIAG(exp, buf, res, n)\
-sliceSum(exp, buf, Tp);\
-res.name = (n);\
-res.corr.resize(buf.size());\
-for (unsigned int t = 0; t < buf.size(); ++t)\
-{\
-    res.corr[t] = TensorRemove(buf[t]);\
-}
-
-//// Contraction of mu index: use 'mu' variable in exp.
-#define SUM_MU(buf,exp)\
-buf = zero;\
-for (unsigned int mu = 0; mu < ndim; ++mu)\
-{\
-    buf += exp;\
-}
-
-enum 
-{
-  i_V = 0,
-  i_A = 1,
-  n_i = 2
-};
-
-class WeakHamiltonianPar: Serializable
-{
-public:
-    GRID_SERIALIZABLE_CLASS_MEMBERS(WeakHamiltonianPar,
-                                    std::string, q1,
-                                    std::string, q2,
-                                    std::string, q3,
-                                    std::string, q4,
-                                    std::string, output);
-};
-
-#define MAKE_WEAK_MODULE(modname)\
-class T##modname: public Module<WeakHamiltonianPar>\
-{\
-public:\
-    FERM_TYPE_ALIASES(FIMPL,)\
-    class Result: Serializable\
-    {\
-    public:\
-        GRID_SERIALIZABLE_CLASS_MEMBERS(Result,\
-                                        std::string, name,\
-                                        std::vector<Complex>, corr);\
-    };\
-public:\
-    /* constructor */ \
-    T##modname(const std::string name);\
-    /* destructor */ \
-    virtual ~T##modname(void) = default;\
-    /* dependency relation */ \
-    virtual std::vector<std::string> getInput(void);\
-    virtual std::vector<std::string> getOutput(void);\
-    /* setup */ \
-    virtual void setup(void);\
-    /* execution */ \
-    virtual void execute(void);\
-    std::vector<std::string> VA_label = {"V", "A"};\
-};\
-MODULE_REGISTER_NS(modname, T##modname, MContraction);
-
-END_MODULE_NAMESPACE
-
-END_HADRONS_NAMESPACE
-
-#endif // Hadrons_MContraction_WeakHamiltonian_hpp_

extras/Hadrons/Modules/MContraction/WeakHamiltonianEye.cc

@@ -1,137 +0,0 @@
-/*************************************************************************************
-
-Grid physics library, www.github.com/paboyle/Grid 
-
-Source file: extras/Hadrons/Modules/MContraction/WeakHamiltonianEye.cc
-
-Copyright (C) 2017
-
-Author: Andrew Lawson    <andrew.lawson1991@gmail.com>
-
-This program is free software; you can redistribute it and/or modify
-it under the terms of the GNU General Public License as published by
-the Free Software Foundation; either version 2 of the License, or
-(at your option) any later version.
-
-This program is distributed in the hope that it will be useful,
-but WITHOUT ANY WARRANTY; without even the implied warranty of
-MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-GNU General Public License for more details.
-
-You should have received a copy of the GNU General Public License along
-with this program; if not, write to the Free Software Foundation, Inc.,
-51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
-
-See the full license in the file "LICENSE" in the top level distribution directory
-*************************************************************************************/
-/*  END LEGAL */
-
-#include <Grid/Hadrons/Modules/MContraction/WeakHamiltonianEye.hpp>
-
-using namespace Grid;
-using namespace Hadrons;
-using namespace MContraction;
-
-/*
- * Weak Hamiltonian current-current contractions, Eye-type.
- * 
- * These contractions are generated by the Q1 and Q2 operators in the physical
- * basis (see e.g. Fig 3 of arXiv:1507.03094).
- * 
- * Schematics:        q4                 |                  
- *                  /-<-¬                |                             
- *                 /     \               |             q2           q3
- *                 \     /               |        /----<------*------<----¬                        
- *            q2    \   /    q3          |       /          /-*-¬          \
- *       /-----<-----* *-----<----¬      |      /          /     \          \
- *    i *            H_W           * f   |   i *           \     /  q4      * f
- *       \                        /      |      \           \->-/          /   
- *        \                      /       |       \                        /       
- *         \---------->---------/        |        \----------->----------/        
- *                   q1                  |                   q1                  
- *                                       |
- *                Saucer (S)             |                  Eye (E)
- * 
- * S: trace(q3*g5*q1*adj(q2)*g5*gL[mu][p_1]*q4*gL[mu][p_2])
- * E: trace(q3*g5*q1*adj(q2)*g5*gL[mu][p_1])*trace(q4*gL[mu][p_2])
- */
-
-/******************************************************************************
- *                  TWeakHamiltonianEye implementation                        *
- ******************************************************************************/
-// constructor /////////////////////////////////////////////////////////////////
-TWeakHamiltonianEye::TWeakHamiltonianEye(const std::string name)
-: Module<WeakHamiltonianPar>(name)
-{}
-
-// dependencies/products ///////////////////////////////////////////////////////
-std::vector<std::string> TWeakHamiltonianEye::getInput(void)
-{
-    std::vector<std::string> in = {par().q1, par().q2, par().q3, par().q4};
-    
-    return in;
-}
-
-std::vector<std::string> TWeakHamiltonianEye::getOutput(void)
-{
-    std::vector<std::string> out = {getName()};
-    
-    return out;
-}
-
-// setup ///////////////////////////////////////////////////////////////////////
-void TWeakHamiltonianEye::setup(void)
-{
-
-}
-
-// execution ///////////////////////////////////////////////////////////////////
-void TWeakHamiltonianEye::execute(void)
-{
-    LOG(Message) << "Computing Weak Hamiltonian (Eye type) contractions '" 
-                 << getName() << "' using quarks '" << par().q1 << "', '" 
-                 << par().q2 << ", '" << par().q3 << "' and '" << par().q4 
-                 << "'." << std::endl;
-
-    CorrWriter             writer(par().output);
-    PropagatorField &q1 = *env().template getObject<PropagatorField>(par().q1);
-    PropagatorField &q2 = *env().template getObject<PropagatorField>(par().q2);
-    PropagatorField &q3 = *env().template getObject<PropagatorField>(par().q3);
-    PropagatorField &q4 = *env().template getObject<PropagatorField>(par().q4);
-    Gamma g5            = Gamma(Gamma::Algebra::Gamma5);
-    LatticeComplex        expbuf(env().getGrid());
-    std::vector<TComplex> corrbuf;
-    std::vector<Result>   result(n_eye_diag);
-    unsigned int ndim   = env().getNd();
-
-    PropagatorField              tmp1(env().getGrid());
-    LatticeComplex               tmp2(env().getGrid());
-    std::vector<PropagatorField> S_body(ndim, tmp1);
-    std::vector<PropagatorField> S_loop(ndim, tmp1);
-    std::vector<LatticeComplex>  E_body(ndim, tmp2);
-    std::vector<LatticeComplex>  E_loop(ndim, tmp2);
-
-    // Setup for S-type contractions.
-    for (int mu = 0; mu < ndim; ++mu)
-    {
-        S_body[mu] = MAKE_SE_BODY(q1, q2, q3, GammaL(Gamma::gmu[mu]));
-        S_loop[mu] = MAKE_SE_LOOP(q4, GammaL(Gamma::gmu[mu]));
-    }
-
-    // Perform S-type contractions.    
-    SUM_MU(expbuf, trace(S_body[mu]*S_loop[mu]))
-    MAKE_DIAG(expbuf, corrbuf, result[S_diag], "HW_S")
-
-    // Recycle sub-expressions for E-type contractions.
-    for (unsigned int mu = 0; mu < ndim; ++mu)
-    {
-        E_body[mu] = trace(S_body[mu]);
-        E_loop[mu] = trace(S_loop[mu]);
-    }
-
-    // Perform E-type contractions.
-    SUM_MU(expbuf, E_body[mu]*E_loop[mu])
-    MAKE_DIAG(expbuf, corrbuf, result[E_diag], "HW_E")
-
-    write(writer, "HW_Eye", result);
-}

extras/Hadrons/Modules/MContraction/WeakHamiltonianEye.hpp

@@ -1,58 +0,0 @@
-/*************************************************************************************
-
-Grid physics library, www.github.com/paboyle/Grid 
-
-Source file: extras/Hadrons/Modules/MContraction/WeakHamiltonianEye.hpp
-
-Copyright (C) 2017
-
-Author: Andrew Lawson    <andrew.lawson1991@gmail.com>
-
-This program is free software; you can redistribute it and/or modify
-it under the terms of the GNU General Public License as published by
-the Free Software Foundation; either version 2 of the License, or
-(at your option) any later version.
-
-This program is distributed in the hope that it will be useful,
-but WITHOUT ANY WARRANTY; without even the implied warranty of
-MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-GNU General Public License for more details.
-
-You should have received a copy of the GNU General Public License along
-with this program; if not, write to the Free Software Foundation, Inc.,
-51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
-
-See the full license in the file "LICENSE" in the top level distribution directory
-*************************************************************************************/
-/*  END LEGAL */
-
-#ifndef Hadrons_MContraction_WeakHamiltonianEye_hpp_
-#define Hadrons_MContraction_WeakHamiltonianEye_hpp_
-
-#include <Grid/Hadrons/Modules/MContraction/WeakHamiltonian.hpp>
-
-BEGIN_HADRONS_NAMESPACE
-
-/******************************************************************************
- *                         WeakHamiltonianEye                                 *
- ******************************************************************************/
-BEGIN_MODULE_NAMESPACE(MContraction)
-
-enum
-{
-    S_diag = 0,
-    E_diag = 1,
-    n_eye_diag = 2
-};
-
-// Saucer and Eye subdiagram contractions.
-#define MAKE_SE_BODY(Q_1, Q_2, Q_3, gamma) (Q_3*g5*Q_1*adj(Q_2)*g5*gamma)
-#define MAKE_SE_LOOP(Q_loop, gamma) (Q_loop*gamma)
-
-MAKE_WEAK_MODULE(WeakHamiltonianEye)
-
-END_MODULE_NAMESPACE
-
-END_HADRONS_NAMESPACE
-
-#endif // Hadrons_MContraction_WeakHamiltonianEye_hpp_

extras/Hadrons/Modules/MContraction/WeakHamiltonianNonEye.cc

@@ -1,139 +0,0 @@
-/*************************************************************************************
-
-Grid physics library, www.github.com/paboyle/Grid 
-
-Source file: extras/Hadrons/Modules/MContraction/WeakHamiltonianNonEye.cc
-
-Copyright (C) 2017
-
-Author: Andrew Lawson    <andrew.lawson1991@gmail.com>
-
-This program is free software; you can redistribute it and/or modify
-it under the terms of the GNU General Public License as published by
-the Free Software Foundation; either version 2 of the License, or
-(at your option) any later version.
-
-This program is distributed in the hope that it will be useful,
-but WITHOUT ANY WARRANTY; without even the implied warranty of
-MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-GNU General Public License for more details.
-
-You should have received a copy of the GNU General Public License along
-with this program; if not, write to the Free Software Foundation, Inc.,
-51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
-
-See the full license in the file "LICENSE" in the top level distribution directory
-*************************************************************************************/
-/*  END LEGAL */
-
-#include <Grid/Hadrons/Modules/MContraction/WeakHamiltonianNonEye.hpp>
-
-using namespace Grid;
-using namespace Hadrons;
-using namespace MContraction;
-
-/*
- * Weak Hamiltonian current-current contractions, Non-Eye-type.
- * 
- * These contractions are generated by the Q1 and Q2 operators in the physical
- * basis (see e.g. Fig 3 of arXiv:1507.03094).
- * 
- * Schematic:     
- *            q2             q3          |           q2              q3
- *          /--<--¬       /--<--¬        |        /--<--¬         /--<--¬       
- *         /       \     /       \       |       /       \       /       \      
- *        /         \   /         \      |      /         \     /         \     
- *       /           \ /           \     |     /           \   /           \    
- *    i *             * H_W         *  f |  i *             * * H_W         * f 
- *      \             *             |    |     \           /   \           /
- *       \           / \           /     |      \         /     \         /    
- *        \         /   \         /      |       \       /       \       /  
- *         \       /     \       /       |        \-->--/         \-->--/      
- *          \-->--/       \-->--/        |          q1               q4 
- *            q1             q4          |
- *                Connected (C)          |                 Wing (W)
- *
- * C: trace(q1*adj(q2)*g5*gL[mu]*q3*adj(q4)*g5*gL[mu])
- * W: trace(q1*adj(q2)*g5*gL[mu])*trace(q3*adj(q4)*g5*gL[mu])
- * 
- */
-
-/******************************************************************************
- *                  TWeakHamiltonianNonEye implementation                     *
- ******************************************************************************/
-// constructor /////////////////////////////////////////////////////////////////
-TWeakHamiltonianNonEye::TWeakHamiltonianNonEye(const std::string name)
-: Module<WeakHamiltonianPar>(name)
-{}
-
-// dependencies/products ///////////////////////////////////////////////////////
-std::vector<std::string> TWeakHamiltonianNonEye::getInput(void)
-{
-    std::vector<std::string> in = {par().q1, par().q2, par().q3, par().q4};
-    
-    return in;
-}
-
-std::vector<std::string> TWeakHamiltonianNonEye::getOutput(void)
-{
-    std::vector<std::string> out = {getName()};
-    
-    return out;
-}
-
-// setup ///////////////////////////////////////////////////////////////////////
-void TWeakHamiltonianNonEye::setup(void)
-{
-
-}
-
-// execution ///////////////////////////////////////////////////////////////////
-void TWeakHamiltonianNonEye::execute(void)
-{
-    LOG(Message) << "Computing Weak Hamiltonian (Non-Eye type) contractions '" 
-                 << getName() << "' using quarks '" << par().q1 << "', '" 
-                 << par().q2 << ", '" << par().q3 << "' and '" << par().q4 
-                 << "'." << std::endl;
-    
-    CorrWriter             writer(par().output);
-    PropagatorField &q1 = *env().template getObject<PropagatorField>(par().q1);
-    PropagatorField &q2 = *env().template getObject<PropagatorField>(par().q2);
-    PropagatorField &q3 = *env().template getObject<PropagatorField>(par().q3);
-    PropagatorField &q4 = *env().template getObject<PropagatorField>(par().q4);
-    Gamma g5            = Gamma(Gamma::Algebra::Gamma5);
-    LatticeComplex        expbuf(env().getGrid());
-    std::vector<TComplex> corrbuf;
-    std::vector<Result>   result(n_noneye_diag); 
-    unsigned int ndim   = env().getNd();
-
-    PropagatorField              tmp1(env().getGrid());
-    LatticeComplex               tmp2(env().getGrid());
-    std::vector<PropagatorField> C_i_side_loop(ndim, tmp1);
-    std::vector<PropagatorField> C_f_side_loop(ndim, tmp1);
-    std::vector<LatticeComplex>  W_i_side_loop(ndim, tmp2);
-    std::vector<LatticeComplex>  W_f_side_loop(ndim, tmp2);
-
-    // Setup for C-type contractions.
-    for (int mu = 0; mu < ndim; ++mu)
-    {
-        C_i_side_loop[mu] = MAKE_CW_SUBDIAG(q1, q2, GammaL(Gamma::gmu[mu]));
-        C_f_side_loop[mu] = MAKE_CW_SUBDIAG(q3, q4, GammaL(Gamma::gmu[mu]));
-    }
-
-    // Perform C-type contractions.    
-    SUM_MU(expbuf, trace(C_i_side_loop[mu]*C_f_side_loop[mu]))
-    MAKE_DIAG(expbuf, corrbuf, result[C_diag], "HW_C")
-
-    // Recycle sub-expressions for W-type contractions.
-    for (unsigned int mu = 0; mu < ndim; ++mu)
-    {
-        W_i_side_loop[mu] = trace(C_i_side_loop[mu]);
-        W_f_side_loop[mu] = trace(C_f_side_loop[mu]);
-    }
-
-    // Perform W-type contractions.
-    SUM_MU(expbuf, W_i_side_loop[mu]*W_f_side_loop[mu])
-    MAKE_DIAG(expbuf, corrbuf, result[W_diag], "HW_W")
-
-    write(writer, "HW_NonEye", result);
-}

extras/Hadrons/Modules/MContraction/WeakHamiltonianNonEye.hpp

@@ -1,57 +0,0 @@
-/*************************************************************************************
-
-Grid physics library, www.github.com/paboyle/Grid 
-
-Source file: extras/Hadrons/Modules/MContraction/WeakHamiltonianNonEye.hpp
-
-Copyright (C) 2017
-
-Author: Andrew Lawson    <andrew.lawson1991@gmail.com>
-
-This program is free software; you can redistribute it and/or modify
-it under the terms of the GNU General Public License as published by
-the Free Software Foundation; either version 2 of the License, or
-(at your option) any later version.
-
-This program is distributed in the hope that it will be useful,
-but WITHOUT ANY WARRANTY; without even the implied warranty of
-MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-GNU General Public License for more details.
-
-You should have received a copy of the GNU General Public License along
-with this program; if not, write to the Free Software Foundation, Inc.,
-51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
-
-See the full license in the file "LICENSE" in the top level distribution directory
-*************************************************************************************/
-/*  END LEGAL */
-
-#ifndef Hadrons_MContraction_WeakHamiltonianNonEye_hpp_
-#define Hadrons_MContraction_WeakHamiltonianNonEye_hpp_
-
-#include <Grid/Hadrons/Modules/MContraction/WeakHamiltonian.hpp>
-
-BEGIN_HADRONS_NAMESPACE
-
-/******************************************************************************
- *                         WeakHamiltonianNonEye                              *
- ******************************************************************************/
-BEGIN_MODULE_NAMESPACE(MContraction)
-
-enum
-{
-    W_diag = 0,
-    C_diag = 1,
-    n_noneye_diag = 2
-};
-
-// Wing and Connected subdiagram contractions
-#define MAKE_CW_SUBDIAG(Q_1, Q_2, gamma) (Q_1*adj(Q_2)*g5*gamma)
-
-MAKE_WEAK_MODULE(WeakHamiltonianNonEye)
-
-END_MODULE_NAMESPACE
-
-END_HADRONS_NAMESPACE
-
-#endif // Hadrons_MContraction_WeakHamiltonianNonEye_hpp_

extras/Hadrons/Modules/MContraction/WeakNeutral4ptDisc.cc

@@ -1,135 +0,0 @@
-/*************************************************************************************
-
-Grid physics library, www.github.com/paboyle/Grid 
-
-Source file: extras/Hadrons/Modules/MContraction/WeakNeutral4ptDisc.cc
-
-Copyright (C) 2017
-
-Author: Andrew Lawson    <andrew.lawson1991@gmail.com>
-
-This program is free software; you can redistribute it and/or modify
-it under the terms of the GNU General Public License as published by
-the Free Software Foundation; either version 2 of the License, or
-(at your option) any later version.
-
-This program is distributed in the hope that it will be useful,
-but WITHOUT ANY WARRANTY; without even the implied warranty of
-MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-GNU General Public License for more details.
-
-You should have received a copy of the GNU General Public License along
-with this program; if not, write to the Free Software Foundation, Inc.,
-51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
-
-See the full license in the file "LICENSE" in the top level distribution directory
-*************************************************************************************/
-/*  END LEGAL */
-
-#include <Grid/Hadrons/Modules/MContraction/WeakNeutral4ptDisc.hpp>
-
-using namespace Grid;
-using namespace Hadrons;
-using namespace MContraction;
-
-/*
- * Weak Hamiltonian + current contractions, disconnected topology for neutral 
- * mesons.
- * 
- * These contractions are generated by operators Q_1,...,10 of the dS=1 Weak
- * Hamiltonian in the physical basis and an additional current J (see e.g. 
- * Fig 11 of arXiv:1507.03094).
- * 
- * Schematic:
- *                        
- *           q2          q4             q3
- *       /--<--¬     /---<--¬       /---<--¬
- *     /         \ /         \     /        \
- *  i *           * H_W      |  J *          * f
- *     \         / \         /     \        /
- *      \--->---/   \-------/       \------/
- *          q1 
- * 
- * options
- * - q1: input propagator 1 (string)
- * - q2: input propagator 2 (string)
- * - q3: input propagator 3 (string), assumed to be sequential propagator 
- * - q4: input propagator 4 (string), assumed to be a loop
- * 
- * type 1: trace(q1*adj(q2)*g5*gL[mu])*trace(loop*gL[mu])*trace(q3*g5)
- * type 2: trace(q1*adj(q2)*g5*gL[mu]*loop*gL[mu])*trace(q3*g5)
- */
-
-/*******************************************************************************
- *                  TWeakNeutral4ptDisc implementation                         *
- ******************************************************************************/
-// constructor /////////////////////////////////////////////////////////////////
-TWeakNeutral4ptDisc::TWeakNeutral4ptDisc(const std::string name)
-: Module<WeakHamiltonianPar>(name)
-{}
-
-// dependencies/products ///////////////////////////////////////////////////////
-std::vector<std::string> TWeakNeutral4ptDisc::getInput(void)
-{
-    std::vector<std::string> in = {par().q1, par().q2, par().q3, par().q4};
-    
-    return in;
-}
-
-std::vector<std::string> TWeakNeutral4ptDisc::getOutput(void)
-{
-    std::vector<std::string> out = {getName()};
-    
-    return out;
-}
-
-// setup ///////////////////////////////////////////////////////////////////////
-void TWeakNeutral4ptDisc::setup(void)
-{
-
-}
-
-// execution ///////////////////////////////////////////////////////////////////
-void TWeakNeutral4ptDisc::execute(void)
-{
-    LOG(Message) << "Computing Weak Hamiltonian neutral disconnected contractions '" 
-                 << getName() << "' using quarks '" << par().q1 << "', '" 
-                 << par().q2 << ", '" << par().q3 << "' and '" << par().q4 
-                 << "'." << std::endl;
-
-    CorrWriter             writer(par().output);
-    PropagatorField &q1 = *env().template getObject<PropagatorField>(par().q1);
-    PropagatorField &q2 = *env().template getObject<PropagatorField>(par().q2);
-    PropagatorField &q3 = *env().template getObject<PropagatorField>(par().q3);
-    PropagatorField &q4 = *env().template getObject<PropagatorField>(par().q4);
-    Gamma g5            = Gamma(Gamma::Algebra::Gamma5);
-    LatticeComplex        expbuf(env().getGrid());
-    std::vector<TComplex> corrbuf;
-    std::vector<Result>   result(n_neut_disc_diag);
-    unsigned int ndim   = env().getNd();
-
-    PropagatorField              tmp(env().getGrid());
-    std::vector<PropagatorField> meson(ndim, tmp);
-    std::vector<PropagatorField> loop(ndim, tmp);
-    LatticeComplex               curr(env().getGrid());
-
-    // Setup for type 1 contractions.
-    for (int mu = 0; mu < ndim; ++mu)
-    {
-        meson[mu] = MAKE_DISC_MESON(q1, q2, GammaL(Gamma::gmu[mu]));
-        loop[mu] = MAKE_DISC_LOOP(q4, GammaL(Gamma::gmu[mu]));
-    }
-    curr = MAKE_DISC_CURR(q3, GammaL(Gamma::Algebra::Gamma5));
-
-    // Perform type 1 contractions.    
-    SUM_MU(expbuf, trace(meson[mu]*loop[mu]))
-    expbuf *= curr;
-    MAKE_DIAG(expbuf, corrbuf, result[neut_disc_1_diag], "HW_disc0_1")
-
-    // Perform type 2 contractions.
-    SUM_MU(expbuf, trace(meson[mu])*trace(loop[mu]))
-    expbuf *= curr;
-    MAKE_DIAG(expbuf, corrbuf, result[neut_disc_2_diag], "HW_disc0_2")
-
-    write(writer, "HW_disc0", result);
-}

extras/Hadrons/Modules/MContraction/WeakNeutral4ptDisc.hpp

@@ -1,59 +0,0 @@
-/*************************************************************************************
-
-Grid physics library, www.github.com/paboyle/Grid 
-
-Source file: extras/Hadrons/Modules/MContraction/WeakNeutral4ptDisc.hpp
-
-Copyright (C) 2017
-
-Author: Andrew Lawson    <andrew.lawson1991@gmail.com>
-
-This program is free software; you can redistribute it and/or modify
-it under the terms of the GNU General Public License as published by
-the Free Software Foundation; either version 2 of the License, or
-(at your option) any later version.
-
-This program is distributed in the hope that it will be useful,
-but WITHOUT ANY WARRANTY; without even the implied warranty of
-MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-GNU General Public License for more details.
-
-You should have received a copy of the GNU General Public License along
-with this program; if not, write to the Free Software Foundation, Inc.,
-51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
-
-See the full license in the file "LICENSE" in the top level distribution directory
-*************************************************************************************/
-/*  END LEGAL */
-
-#ifndef Hadrons_MContraction_WeakNeutral4ptDisc_hpp_
-#define Hadrons_MContraction_WeakNeutral4ptDisc_hpp_
-
-#include <Grid/Hadrons/Modules/MContraction/WeakHamiltonian.hpp>
-
-BEGIN_HADRONS_NAMESPACE
-
-/******************************************************************************
- *                         WeakNeutral4ptDisc                                 *
- ******************************************************************************/
-BEGIN_MODULE_NAMESPACE(MContraction)
-
-enum
-{
-    neut_disc_1_diag = 0,
-    neut_disc_2_diag = 1,
-    n_neut_disc_diag = 2
-};
-
-// Neutral 4pt disconnected subdiagram contractions.
-#define MAKE_DISC_MESON(Q_1, Q_2, gamma) (Q_1*adj(Q_2)*g5*gamma)
-#define MAKE_DISC_LOOP(Q_LOOP, gamma) (Q_LOOP*gamma)
-#define MAKE_DISC_CURR(Q_c, gamma) (trace(Q_c*gamma))
-
-MAKE_WEAK_MODULE(WeakNeutral4ptDisc)
-
-END_MODULE_NAMESPACE
-
-END_HADRONS_NAMESPACE
-
-#endif // Hadrons_MContraction_WeakNeutral4ptDisc_hpp_

extras/Hadrons/Modules/MGauge/Load.cc

@@ -65,7 +65,7 @@ void TLoad::setup(void)
 // execution ///////////////////////////////////////////////////////////////////
 void TLoad::execute(void)
 {
-    FieldMetaData  header;
+    NerscField  header;
     std::string fileName = par().file + "."
                            + std::to_string(env().getTrajectory());
     
@@ -74,5 +74,5 @@ void TLoad::execute(void)
     LatticeGaugeField &U = *env().createLattice<LatticeGaugeField>(getName());
     NerscIO::readConfiguration(U, header, fileName);
     LOG(Message) << "NERSC header:" << std::endl;
-    dump_meta_data(header, LOG(Message));
+    dump_nersc_header(header, LOG(Message));
 }

extras/Hadrons/Modules/MGauge/Load.hpp

@@ -27,8 +27,8 @@ See the full license in the file "LICENSE" in the top level distribution directo
 *************************************************************************************/
 /*  END LEGAL */
 
-#ifndef Hadrons_MGauge_Load_hpp_
+#ifndef Hadrons_Load_hpp_
-#define Hadrons_MGauge_Load_hpp_
+#define Hadrons_Load_hpp_
 
 #include <Grid/Hadrons/Global.hpp>
 #include <Grid/Hadrons/Module.hpp>
@@ -70,4 +70,4 @@ END_MODULE_NAMESPACE
 
 END_HADRONS_NAMESPACE
 
-#endif // Hadrons_MGauge_Load_hpp_
+#endif // Hadrons_Load_hpp_

extras/Hadrons/Modules/MGauge/Random.hpp

@@ -27,8 +27,8 @@ See the full license in the file "LICENSE" in the top level distribution directo
 *************************************************************************************/
 /*  END LEGAL */
 
-#ifndef Hadrons_MGauge_Random_hpp_
+#ifndef Hadrons_Random_hpp_
-#define Hadrons_MGauge_Random_hpp_
+#define Hadrons_Random_hpp_
 
 #include <Grid/Hadrons/Global.hpp>
 #include <Grid/Hadrons/Module.hpp>
@@ -63,4 +63,4 @@ END_MODULE_NAMESPACE
 
 END_HADRONS_NAMESPACE
 
-#endif // Hadrons_MGauge_Random_hpp_
+#endif // Hadrons_Random_hpp_

extras/Hadrons/Modules/MGauge/StochEm.cc

@@ -1,88 +0,0 @@
-/*************************************************************************************
-
-Grid physics library, www.github.com/paboyle/Grid 
-
-Source file: extras/Hadrons/Modules/MGauge/StochEm.cc
-
-Copyright (C) 2015
-Copyright (C) 2016
-
-
-This program is free software; you can redistribute it and/or modify
-it under the terms of the GNU General Public License as published by
-the Free Software Foundation; either version 2 of the License, or
-(at your option) any later version.
-
-This program is distributed in the hope that it will be useful,
-but WITHOUT ANY WARRANTY; without even the implied warranty of
-MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-GNU General Public License for more details.
-
-You should have received a copy of the GNU General Public License along
-with this program; if not, write to the Free Software Foundation, Inc.,
-51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
-
-See the full license in the file "LICENSE" in the top level distribution directory
-*************************************************************************************/
-/*  END LEGAL */
-#include <Grid/Hadrons/Modules/MGauge/StochEm.hpp>
-
-using namespace Grid;
-using namespace Hadrons;
-using namespace MGauge;
-
-/******************************************************************************
-*                  TStochEm implementation                             *
-******************************************************************************/
-// constructor /////////////////////////////////////////////////////////////////
-TStochEm::TStochEm(const std::string name)
-: Module<StochEmPar>(name)
-{}
-
-// dependencies/products ///////////////////////////////////////////////////////
-std::vector<std::string> TStochEm::getInput(void)
-{
-    std::vector<std::string> in;
-    
-    return in;
-}
-
-std::vector<std::string> TStochEm::getOutput(void)
-{
-    std::vector<std::string> out = {getName()};
-    
-    return out;
-}
-
-// setup ///////////////////////////////////////////////////////////////////////
-void TStochEm::setup(void)
-{
-    if (!env().hasRegisteredObject("_" + getName() + "_weight"))
-    {
-        env().registerLattice<EmComp>("_" + getName() + "_weight");
-    }
-    env().registerLattice<EmField>(getName());
-}
-
-// execution ///////////////////////////////////////////////////////////////////
-void TStochEm::execute(void)
-{
-    PhotonR photon(par().gauge, par().zmScheme);
-    EmField &a = *env().createLattice<EmField>(getName());
-    EmComp  *w;
-    
-    if (!env().hasCreatedObject("_" + getName() + "_weight"))
-    {
-        LOG(Message) << "Caching stochatic EM potential weight (gauge: "
-                     << par().gauge << ", zero-mode scheme: "
-                     << par().zmScheme << ")..." << std::endl;
-        w = env().createLattice<EmComp>("_" + getName() + "_weight");
-        photon.StochasticWeight(*w);
-    }
-    else
-    {
-        w = env().getObject<EmComp>("_" + getName() + "_weight");
-    }
-    LOG(Message) << "Generating stochatic EM potential..." << std::endl;
-    photon.StochasticField(a, *env().get4dRng(), *w);
-}

extras/Hadrons/Modules/MGauge/StochEm.hpp

@@ -1,75 +0,0 @@
-/*************************************************************************************
-
-Grid physics library, www.github.com/paboyle/Grid 
-
-Source file: extras/Hadrons/Modules/MGauge/StochEm.hpp
-
-Copyright (C) 2015
-Copyright (C) 2016
-
-
-This program is free software; you can redistribute it and/or modify
-it under the terms of the GNU General Public License as published by
-the Free Software Foundation; either version 2 of the License, or
-(at your option) any later version.
-
-This program is distributed in the hope that it will be useful,
-but WITHOUT ANY WARRANTY; without even the implied warranty of
-MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-GNU General Public License for more details.
-
-You should have received a copy of the GNU General Public License along
-with this program; if not, write to the Free Software Foundation, Inc.,
-51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
-
-See the full license in the file "LICENSE" in the top level distribution directory
-*************************************************************************************/
-/*  END LEGAL */
-#ifndef Hadrons_MGauge_StochEm_hpp_
-#define Hadrons_MGauge_StochEm_hpp_
-
-#include <Grid/Hadrons/Global.hpp>
-#include <Grid/Hadrons/Module.hpp>
-#include <Grid/Hadrons/ModuleFactory.hpp>
-
-BEGIN_HADRONS_NAMESPACE
-
-/******************************************************************************
- *                         StochEm                                 *
- ******************************************************************************/
-BEGIN_MODULE_NAMESPACE(MGauge)
-
-class StochEmPar: Serializable
-{
-public:
-    GRID_SERIALIZABLE_CLASS_MEMBERS(StochEmPar,
-                                    PhotonR::Gauge,    gauge,
-                                    PhotonR::ZmScheme, zmScheme);
-};
-
-class TStochEm: public Module<StochEmPar>
-{
-public:
-    typedef PhotonR::GaugeField     EmField;
-    typedef PhotonR::GaugeLinkField EmComp;
-public:
-    // constructor
-    TStochEm(const std::string name);
-    // destructor
-    virtual ~TStochEm(void) = default;
-    // dependency relation
-    virtual std::vector<std::string> getInput(void);
-    virtual std::vector<std::string> getOutput(void);
-    // setup
-    virtual void setup(void);
-    // execution
-    virtual void execute(void);
-};
-
-MODULE_REGISTER_NS(StochEm, TStochEm, MGauge);
-
-END_MODULE_NAMESPACE
-
-END_HADRONS_NAMESPACE
-
-#endif // Hadrons_MGauge_StochEm_hpp_

extras/Hadrons/Modules/MGauge/Unit.hpp

@@ -27,8 +27,8 @@ See the full license in the file "LICENSE" in the top level distribution directo
 *************************************************************************************/
 /*  END LEGAL */
 
-#ifndef Hadrons_MGauge_Unit_hpp_
+#ifndef Hadrons_Unit_hpp_
-#define Hadrons_MGauge_Unit_hpp_
+#define Hadrons_Unit_hpp_
 
 #include <Grid/Hadrons/Global.hpp>
 #include <Grid/Hadrons/Module.hpp>
@@ -63,4 +63,4 @@ END_MODULE_NAMESPACE
 
 END_HADRONS_NAMESPACE
 
-#endif // Hadrons_MGauge_Unit_hpp_
+#endif // Hadrons_Unit_hpp_

extras/Hadrons/Modules/MLoop/NoiseLoop.hpp

@@ -1,132 +0,0 @@
-/*************************************************************************************
-
-Grid physics library, www.github.com/paboyle/Grid 
-
-Source file: extras/Hadrons/Modules/MLoop/NoiseLoop.hpp
-
-Copyright (C) 2016
-
-Author: Andrew Lawson <andrew.lawson1991@gmail.com>
-
-This program is free software; you can redistribute it and/or modify
-it under the terms of the GNU General Public License as published by
-the Free Software Foundation; either version 2 of the License, or
-(at your option) any later version.
-
-This program is distributed in the hope that it will be useful,
-but WITHOUT ANY WARRANTY; without even the implied warranty of
-MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-GNU General Public License for more details.
-
-You should have received a copy of the GNU General Public License along
-with this program; if not, write to the Free Software Foundation, Inc.,
-51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
-
-See the full license in the file "LICENSE" in the top level distribution directory
-*************************************************************************************/
-/*  END LEGAL */
-
-#ifndef Hadrons_MLoop_NoiseLoop_hpp_
-#define Hadrons_MLoop_NoiseLoop_hpp_
-
-#include <Grid/Hadrons/Global.hpp>
-#include <Grid/Hadrons/Module.hpp>
-#include <Grid/Hadrons/ModuleFactory.hpp>
-
-BEGIN_HADRONS_NAMESPACE
-
-/*
- 
- Noise loop propagator
- -----------------------------
- * loop_x = q_x * adj(eta_x)
- 
- * options:
- - q = Result of inversion on noise source.
- - eta = noise source.
-
- */
-
-
-/******************************************************************************
- *                         NoiseLoop                                          *
- ******************************************************************************/
-BEGIN_MODULE_NAMESPACE(MLoop)
-
-class NoiseLoopPar: Serializable
-{
-public:
-    GRID_SERIALIZABLE_CLASS_MEMBERS(NoiseLoopPar,
-                                    std::string, q,
-                                    std::string, eta);
-};
-
-template <typename FImpl>
-class TNoiseLoop: public Module<NoiseLoopPar>
-{
-public:
-    FERM_TYPE_ALIASES(FImpl,);
-public:
-    // constructor
-    TNoiseLoop(const std::string name);
-    // destructor
-    virtual ~TNoiseLoop(void) = default;
-    // dependency relation
-    virtual std::vector<std::string> getInput(void);
-    virtual std::vector<std::string> getOutput(void);
-    // setup
-    virtual void setup(void);
-    // execution
-    virtual void execute(void);
-};
-
-MODULE_REGISTER_NS(NoiseLoop, TNoiseLoop<FIMPL>, MLoop);
-
-/******************************************************************************
- *                 TNoiseLoop implementation                                  *
- ******************************************************************************/
-// constructor /////////////////////////////////////////////////////////////////
-template <typename FImpl>
-TNoiseLoop<FImpl>::TNoiseLoop(const std::string name)
-: Module<NoiseLoopPar>(name)
-{}
-
-// dependencies/products ///////////////////////////////////////////////////////
-template <typename FImpl>
-std::vector<std::string> TNoiseLoop<FImpl>::getInput(void)
-{
-    std::vector<std::string> in = {par().q, par().eta};
-    
-    return in;
-}
-
-template <typename FImpl>
-std::vector<std::string> TNoiseLoop<FImpl>::getOutput(void)
-{
-    std::vector<std::string> out = {getName()};
-    
-    return out;
-}
-
-// setup ///////////////////////////////////////////////////////////////////////
-template <typename FImpl>
-void TNoiseLoop<FImpl>::setup(void)
-{
-    env().template registerLattice<PropagatorField>(getName());
-}
-
-// execution ///////////////////////////////////////////////////////////////////
-template <typename FImpl>
-void TNoiseLoop<FImpl>::execute(void)
-{
-    PropagatorField &loop = *env().template createLattice<PropagatorField>(getName());
-    PropagatorField &q    = *env().template getObject<PropagatorField>(par().q);
-    PropagatorField &eta  = *env().template getObject<PropagatorField>(par().eta);
-    loop = q*adj(eta);
-}
-
-END_MODULE_NAMESPACE
-
-END_HADRONS_NAMESPACE
-
-#endif // Hadrons_MLoop_NoiseLoop_hpp_

extras/Hadrons/Modules/MScalar/ChargedProp.cc

@@ -1,226 +0,0 @@
-#include <Grid/Hadrons/Modules/MScalar/ChargedProp.hpp>
-#include <Grid/Hadrons/Modules/MScalar/Scalar.hpp>
-
-using namespace Grid;
-using namespace Hadrons;
-using namespace MScalar;
-
-/******************************************************************************
-*                     TChargedProp implementation                             *
-******************************************************************************/
-// constructor /////////////////////////////////////////////////////////////////
-TChargedProp::TChargedProp(const std::string name)
-: Module<ChargedPropPar>(name)
-{}
-
-// dependencies/products ///////////////////////////////////////////////////////
-std::vector<std::string> TChargedProp::getInput(void)
-{
-    std::vector<std::string> in = {par().source, par().emField};
-    
-    return in;
-}
-
-std::vector<std::string> TChargedProp::getOutput(void)
-{
-    std::vector<std::string> out = {getName()};
-    
-    return out;
-}
-
-// setup ///////////////////////////////////////////////////////////////////////
-void TChargedProp::setup(void)
-{
-    freeMomPropName_ = FREEMOMPROP(par().mass);
-    phaseName_.clear();
-    for (unsigned int mu = 0; mu < env().getNd(); ++mu)
-    {
-        phaseName_.push_back("_shiftphase_" + std::to_string(mu));
-    }
-    GFSrcName_ = "_" + getName() + "_DinvSrc";
-    if (!env().hasRegisteredObject(freeMomPropName_))
-    {
-        env().registerLattice<ScalarField>(freeMomPropName_);
-    }
-    if (!env().hasRegisteredObject(phaseName_[0]))
-    {
-        for (unsigned int mu = 0; mu < env().getNd(); ++mu)
-        {
-            env().registerLattice<ScalarField>(phaseName_[mu]);
-        }
-    }
-    if (!env().hasRegisteredObject(GFSrcName_))
-    {
-        env().registerLattice<ScalarField>(GFSrcName_);
-    }
-    env().registerLattice<ScalarField>(getName());
-}
-
-// execution ///////////////////////////////////////////////////////////////////
-void TChargedProp::execute(void)
-{
-    // CACHING ANALYTIC EXPRESSIONS
-    ScalarField &source = *env().getObject<ScalarField>(par().source);
-    Complex     ci(0.0,1.0);
-    FFT         fft(env().getGrid());
-    
-    // cache free scalar propagator
-    if (!env().hasCreatedObject(freeMomPropName_))
-    {
-        LOG(Message) << "Caching momentum space free scalar propagator"
-                     << " (mass= " << par().mass << ")..." << std::endl;
-        freeMomProp_ = env().createLattice<ScalarField>(freeMomPropName_);
-        SIMPL::MomentumSpacePropagator(*freeMomProp_, par().mass);
-    }
-    else
-    {
-        freeMomProp_ = env().getObject<ScalarField>(freeMomPropName_);
-    }
-    // cache G*F*src
-    if (!env().hasCreatedObject(GFSrcName_))
-        
-    {
-        GFSrc_ = env().createLattice<ScalarField>(GFSrcName_);
-        fft.FFT_all_dim(*GFSrc_, source, FFT::forward);
-        *GFSrc_ = (*freeMomProp_)*(*GFSrc_);
-    }
-    else
-    {
-        GFSrc_ = env().getObject<ScalarField>(GFSrcName_);
-    }
-    // cache phases
-    if (!env().hasCreatedObject(phaseName_[0]))
-    {
-        std::vector<int> &l = env().getGrid()->_fdimensions;
-        
-        LOG(Message) << "Caching shift phases..." << std::endl;
-        for (unsigned int mu = 0; mu < env().getNd(); ++mu)
-        {
-            Real    twoPiL = M_PI*2./l[mu];
-            
-            phase_.push_back(env().createLattice<ScalarField>(phaseName_[mu]));
-            LatticeCoordinate(*(phase_[mu]), mu);
-            *(phase_[mu]) = exp(ci*twoPiL*(*(phase_[mu])));
-        }
-    }
-    else
-    {
-        for (unsigned int mu = 0; mu < env().getNd(); ++mu)
-        {
-            phase_.push_back(env().getObject<ScalarField>(phaseName_[mu]));
-        }
-    }
-
-    // PROPAGATOR CALCULATION
-    LOG(Message) << "Computing charged scalar propagator"
-                 << " (mass= " << par().mass
-                 << ", charge= " << par().charge << ")..." << std::endl;
-    
-    ScalarField &prop   = *env().createLattice<ScalarField>(getName());
-    ScalarField buf(env().getGrid());
-    ScalarField &GFSrc = *GFSrc_, &G = *freeMomProp_;
-    double      q = par().charge;
-    
-    // G*F*Src
-    prop = GFSrc;
-
-    // - q*G*momD1*G*F*Src (momD1 = F*D1*Finv)
-    buf = GFSrc;
-    momD1(buf, fft);
-    buf = G*buf;
-    prop = prop - q*buf;
-
-    // + q^2*G*momD1*G*momD1*G*F*Src (here buf = G*momD1*G*F*Src)
-    momD1(buf, fft);
-    prop = prop + q*q*G*buf;
-
-    // - q^2*G*momD2*G*F*Src (momD2 = F*D2*Finv)
-    buf = GFSrc;
-    momD2(buf, fft);
-    prop = prop - q*q*G*buf;
-
-    // final FT
-    fft.FFT_all_dim(prop, prop, FFT::backward);
-    
-    // OUTPUT IF NECESSARY
-    if (!par().output.empty())
-    {
-        std::string           filename = par().output + "." +
-                                         std::to_string(env().getTrajectory());
-        
-        LOG(Message) << "Saving zero-momentum projection to '"
-                     << filename << "'..." << std::endl;
-        
-        CorrWriter            writer(filename);
-        std::vector<TComplex> vecBuf;
-        std::vector<Complex>  result;
-        
-        sliceSum(prop, vecBuf, Tp);
-        result.resize(vecBuf.size());
-        for (unsigned int t = 0; t < vecBuf.size(); ++t)
-        {
-            result[t] = TensorRemove(vecBuf[t]);
-        }
-        write(writer, "charge", q);
-        write(writer, "prop", result);
-    }
-}
-
-void TChargedProp::momD1(ScalarField &s, FFT &fft)
-{
-    EmField     &A = *env().getObject<EmField>(par().emField);
-    ScalarField buf(env().getGrid()), result(env().getGrid()),
-                Amu(env().getGrid());
-    Complex     ci(0.0,1.0);
-
-    result = zero;
-
-    for (unsigned int mu = 0; mu < env().getNd(); ++mu)
-    {
-        Amu = peekLorentz(A, mu);
-        buf = (*phase_[mu])*s;
-        fft.FFT_all_dim(buf, buf, FFT::backward);
-        buf = Amu*buf;
-        fft.FFT_all_dim(buf, buf, FFT::forward);
-        result = result - ci*buf;
-    }
-    fft.FFT_all_dim(s, s, FFT::backward);
-    for (unsigned int mu = 0; mu < env().getNd(); ++mu)
-    {
-        Amu = peekLorentz(A, mu);
-        buf = Amu*s;
-        fft.FFT_all_dim(buf, buf, FFT::forward);
-        result = result + ci*adj(*phase_[mu])*buf;
-    }
-
-    s = result;
-}
-
-void TChargedProp::momD2(ScalarField &s, FFT &fft)
-{
-    EmField     &A = *env().getObject<EmField>(par().emField);
-    ScalarField buf(env().getGrid()), result(env().getGrid()),
-                Amu(env().getGrid());
-
-    result = zero;
-    
-    for (unsigned int mu = 0; mu < env().getNd(); ++mu)
-    {
-        Amu = peekLorentz(A, mu);
-        buf = (*phase_[mu])*s;
-        fft.FFT_all_dim(buf, buf, FFT::backward);
-        buf = Amu*Amu*buf;
-        fft.FFT_all_dim(buf, buf, FFT::forward);
-        result = result + .5*buf;
-    }
-    fft.FFT_all_dim(s, s, FFT::backward);
-    for (unsigned int mu = 0; mu < env().getNd(); ++mu)
-    {
-        Amu = peekLorentz(A, mu);        
-        buf = Amu*Amu*s;
-        fft.FFT_all_dim(buf, buf, FFT::forward);
-        result = result + .5*adj(*phase_[mu])*buf;
-    }
-
-    s = result;
-}

extras/Hadrons/Modules/MScalar/ChargedProp.hpp

@@ -1,61 +0,0 @@
-#ifndef Hadrons_MScalar_ChargedProp_hpp_
-#define Hadrons_MScalar_ChargedProp_hpp_
-
-#include <Grid/Hadrons/Global.hpp>
-#include <Grid/Hadrons/Module.hpp>
-#include <Grid/Hadrons/ModuleFactory.hpp>
-
-BEGIN_HADRONS_NAMESPACE
-
-/******************************************************************************
- *                       Charged scalar propagator                            *
- ******************************************************************************/
-BEGIN_MODULE_NAMESPACE(MScalar)
-
-class ChargedPropPar: Serializable
-{
-public:
-    GRID_SERIALIZABLE_CLASS_MEMBERS(ChargedPropPar,
-                                    std::string, emField,
-                                    std::string, source,
-                                    double,      mass,
-                                    double,      charge,
-                                    std::string, output);
-};
-
-class TChargedProp: public Module<ChargedPropPar>
-{
-public:
-    SCALAR_TYPE_ALIASES(SIMPL,);
-    typedef PhotonR::GaugeField     EmField;
-    typedef PhotonR::GaugeLinkField EmComp;
-public:
-    // constructor
-    TChargedProp(const std::string name);
-    // destructor
-    virtual ~TChargedProp(void) = default;
-    // dependency relation
-    virtual std::vector<std::string> getInput(void);
-    virtual std::vector<std::string> getOutput(void);
-    // setup
-    virtual void setup(void);
-    // execution
-    virtual void execute(void);
-private:
-    void momD1(ScalarField &s, FFT &fft);
-    void momD2(ScalarField &s, FFT &fft);
-private:
-    std::string                freeMomPropName_, GFSrcName_;
-    std::vector<std::string>   phaseName_;
-    ScalarField                *freeMomProp_, *GFSrc_;
-    std::vector<ScalarField *> phase_;
-    EmField                    *A;
-};
-
-MODULE_REGISTER_NS(ChargedProp, TChargedProp, MScalar);
-
-END_MODULE_NAMESPACE
-
-END_HADRONS_NAMESPACE
-
-#endif // Hadrons_MScalar_ChargedProp_hpp_

extras/Hadrons/Modules/MScalar/FreeProp.cc

@@ -1,79 +0,0 @@
-#include <Grid/Hadrons/Modules/MScalar/FreeProp.hpp>
-#include <Grid/Hadrons/Modules/MScalar/Scalar.hpp>
-
-using namespace Grid;
-using namespace Hadrons;
-using namespace MScalar;
-
-/******************************************************************************
-*                        TFreeProp implementation                             *
-******************************************************************************/
-// constructor /////////////////////////////////////////////////////////////////
-TFreeProp::TFreeProp(const std::string name)
-: Module<FreePropPar>(name)
-{}
-
-// dependencies/products ///////////////////////////////////////////////////////
-std::vector<std::string> TFreeProp::getInput(void)
-{
-    std::vector<std::string> in = {par().source};
-    
-    return in;
-}
-
-std::vector<std::string> TFreeProp::getOutput(void)
-{
-    std::vector<std::string> out = {getName()};
-    
-    return out;
-}
-
-// setup ///////////////////////////////////////////////////////////////////////
-void TFreeProp::setup(void)
-{
-    freeMomPropName_ = FREEMOMPROP(par().mass);
-    
-    if (!env().hasRegisteredObject(freeMomPropName_))
-    {
-        env().registerLattice<ScalarField>(freeMomPropName_);
-    }
-    env().registerLattice<ScalarField>(getName());
-}
-
-// execution ///////////////////////////////////////////////////////////////////
-void TFreeProp::execute(void)
-{
-    ScalarField &prop   = *env().createLattice<ScalarField>(getName());
-    ScalarField &source = *env().getObject<ScalarField>(par().source);
-    ScalarField *freeMomProp;
-
-    if (!env().hasCreatedObject(freeMomPropName_))
-    {
-        LOG(Message) << "Caching momentum space free scalar propagator"
-                     << " (mass= " << par().mass << ")..." << std::endl;
-        freeMomProp = env().createLattice<ScalarField>(freeMomPropName_);
-        SIMPL::MomentumSpacePropagator(*freeMomProp, par().mass);
-    }
-    else
-    {
-        freeMomProp = env().getObject<ScalarField>(freeMomPropName_);
-    }
-    LOG(Message) << "Computing free scalar propagator..." << std::endl;
-    SIMPL::FreePropagator(source, prop, *freeMomProp);
-    
-    if (!par().output.empty())
-    {
-        TextWriter            writer(par().output + "." +
-                                     std::to_string(env().getTrajectory()));
-        std::vector<TComplex> buf;
-        std::vector<Complex>  result;
-        
-        sliceSum(prop, buf, Tp);
-        result.resize(buf.size());
-        for (unsigned int t = 0; t < buf.size(); ++t)
-        {
-            result[t] = TensorRemove(buf[t]);
-        }
-        write(writer, "prop", result);
-    }
-}

extras/Hadrons/Modules/MScalar/FreeProp.hpp

@@ -1,50 +0,0 @@
-#ifndef Hadrons_MScalar_FreeProp_hpp_
-#define Hadrons_MScalar_FreeProp_hpp_
-
-#include <Grid/Hadrons/Global.hpp>
-#include <Grid/Hadrons/Module.hpp>
-#include <Grid/Hadrons/ModuleFactory.hpp>
-
-BEGIN_HADRONS_NAMESPACE
-
-/******************************************************************************
- *                               FreeProp                                     *
- ******************************************************************************/
-BEGIN_MODULE_NAMESPACE(MScalar)
-
-class FreePropPar: Serializable
-{
-public:
-    GRID_SERIALIZABLE_CLASS_MEMBERS(FreePropPar,
-                                    std::string, source,
-                                    double,      mass,
-                                    std::string, output);
-};
-
-class TFreeProp: public Module<FreePropPar>
-{
-public:
-    SCALAR_TYPE_ALIASES(SIMPL,);
-public:
-    // constructor
-    TFreeProp(const std::string name);
-    // destructor
-    virtual ~TFreeProp(void) = default;
-    // dependency relation
-    virtual std::vector<std::string> getInput(void);
-    virtual std::vector<std::string> getOutput(void);
-    // setup
-    virtual void setup(void);
-    // execution
-    virtual void execute(void);
-private:
-    std::string freeMomPropName_;
-};
-
-MODULE_REGISTER_NS(FreeProp, TFreeProp, MScalar);
-
-END_MODULE_NAMESPACE
-
-END_HADRONS_NAMESPACE
-
-#endif // Hadrons_MScalar_FreeProp_hpp_

extras/Hadrons/Modules/MScalar/Scalar.hpp

@@ -1,6 +0,0 @@
-#ifndef Hadrons_Scalar_hpp_
-#define Hadrons_Scalar_hpp_
-
-#define FREEMOMPROP(m) "_scalar_mom_prop_" + std::to_string(m)
-
-#endif // Hadrons_Scalar_hpp_

extras/Hadrons/Modules/MSink/Point.hpp

@@ -1,114 +0,0 @@
-#ifndef Hadrons_MSink_Point_hpp_
-#define Hadrons_MSink_Point_hpp_
-
-#include <Grid/Hadrons/Global.hpp>
-#include <Grid/Hadrons/Module.hpp>
-#include <Grid/Hadrons/ModuleFactory.hpp>
-
-BEGIN_HADRONS_NAMESPACE
-
-/******************************************************************************
- *                                   Point                                    *
- ******************************************************************************/
-BEGIN_MODULE_NAMESPACE(MSink)
-
-class PointPar: Serializable
-{
-public:
-    GRID_SERIALIZABLE_CLASS_MEMBERS(PointPar,
-                                    std::string, mom);
-};
-
-template <typename FImpl>
-class TPoint: public Module<PointPar>
-{
-public:
-    FERM_TYPE_ALIASES(FImpl,);
-    SINK_TYPE_ALIASES();
-public:
-    // constructor
-    TPoint(const std::string name);
-    // destructor
-    virtual ~TPoint(void) = default;
-    // dependency relation
-    virtual std::vector<std::string> getInput(void);
-    virtual std::vector<std::string> getOutput(void);
-    // setup
-    virtual void setup(void);
-    // execution
-    virtual void execute(void);
-};
-
-MODULE_REGISTER_NS(Point,       TPoint<FIMPL>,        MSink);
-MODULE_REGISTER_NS(ScalarPoint, TPoint<ScalarImplCR>, MSink);
-
-/******************************************************************************
- *                          TPoint implementation                             *
- ******************************************************************************/
-// constructor /////////////////////////////////////////////////////////////////
-template <typename FImpl>
-TPoint<FImpl>::TPoint(const std::string name)
-: Module<PointPar>(name)
-{}
-
-// dependencies/products ///////////////////////////////////////////////////////
-template <typename FImpl>
-std::vector<std::string> TPoint<FImpl>::getInput(void)
-{
-    std::vector<std::string> in;
-    
-    return in;
-}
-
-template <typename FImpl>
-std::vector<std::string> TPoint<FImpl>::getOutput(void)
-{
-    std::vector<std::string> out = {getName()};
-    
-    return out;
-}
-
-// setup ///////////////////////////////////////////////////////////////////////
-template <typename FImpl>
-void TPoint<FImpl>::setup(void)
-{
-    unsigned int size;
-    
-    size = env().template lattice4dSize<LatticeComplex>();
-    env().registerObject(getName(), size);
-}
-
-// execution ///////////////////////////////////////////////////////////////////
-template <typename FImpl>
-void TPoint<FImpl>::execute(void)
-{
-    std::vector<Real> p = strToVec<Real>(par().mom);
-    LatticeComplex    ph(env().getGrid()), coor(env().getGrid());
-    Complex           i(0.0,1.0);
-    
-    LOG(Message) << "Setting up point sink function for momentum ["
-                 << par().mom << "]" << std::endl;
-    ph = zero;
-    for(unsigned int mu = 0; mu < env().getNd(); mu++)
-    {
-        LatticeCoordinate(coor, mu);
-        ph = ph + (p[mu]/env().getGrid()->_fdimensions[mu])*coor;
-    }
-    ph = exp((Real)(2*M_PI)*i*ph);
-    auto sink = [ph](const PropagatorField &field)
-    {
-        SlicedPropagator res;
-        PropagatorField  tmp = ph*field;
-        
-        sliceSum(tmp, res, Tp);
-        
-        return res;
-    };
-    env().setObject(getName(), new SinkFn(sink));
-}
-
-END_MODULE_NAMESPACE
-
-END_HADRONS_NAMESPACE
-
-#endif // Hadrons_MSink_Point_hpp_

extras/Hadrons/Modules/MSolver/RBPrecCG.hpp

@@ -27,8 +27,8 @@ See the full license in the file "LICENSE" in the top level distribution directo
 *************************************************************************************/
 /*  END LEGAL */
 
-#ifndef Hadrons_MSolver_RBPrecCG_hpp_
+#ifndef Hadrons_RBPrecCG_hpp_
-#define Hadrons_MSolver_RBPrecCG_hpp_
+#define Hadrons_RBPrecCG_hpp_
 
 #include <Grid/Hadrons/Global.hpp>
 #include <Grid/Hadrons/Module.hpp>
@@ -53,7 +53,7 @@ template <typename FImpl>
 class TRBPrecCG: public Module<RBPrecCGPar>
 {
 public:
-    FGS_TYPE_ALIASES(FImpl,);
+    TYPE_ALIASES(FImpl,);
 public:
     // constructor
     TRBPrecCG(const std::string name);
@@ -129,4 +129,4 @@ END_MODULE_NAMESPACE
 
 END_HADRONS_NAMESPACE
 
-#endif // Hadrons_MSolver_RBPrecCG_hpp_
+#endif // Hadrons_RBPrecCG_hpp_

extras/Hadrons/Modules/MSource/Point.hpp

@@ -27,8 +27,8 @@ See the full license in the file "LICENSE" in the top level distribution directo
 *************************************************************************************/
 /*  END LEGAL */
 
-#ifndef Hadrons_MSource_Point_hpp_
+#ifndef Hadrons_Point_hpp_
-#define Hadrons_MSource_Point_hpp_
+#define Hadrons_Point_hpp_
 
 #include <Grid/Hadrons/Global.hpp>
 #include <Grid/Hadrons/Module.hpp>
@@ -63,7 +63,7 @@ template <typename FImpl>
 class TPoint: public Module<PointPar>
 {
 public:
-    FERM_TYPE_ALIASES(FImpl,);
+    TYPE_ALIASES(FImpl,);
 public:
     // constructor
     TPoint(const std::string name);
@@ -78,8 +78,7 @@ public:
     virtual void execute(void);
 };
 
-MODULE_REGISTER_NS(Point,       TPoint<FIMPL>,        MSource);
+MODULE_REGISTER_NS(Point, TPoint<FIMPL>, MSource);
-MODULE_REGISTER_NS(ScalarPoint, TPoint<ScalarImplCR>, MSource);
 
 /******************************************************************************
  *                       TPoint template implementation                       *
@@ -133,4 +132,4 @@ END_MODULE_NAMESPACE
 
 END_HADRONS_NAMESPACE
 
-#endif // Hadrons_MSource_Point_hpp_
+#endif // Hadrons_Point_hpp_

extras/Hadrons/Modules/MSource/SeqGamma.hpp

@@ -6,7 +6,6 @@ Source file: extras/Hadrons/Modules/MSource/SeqGamma.hpp
 
 Copyright (C) 2015
 Copyright (C) 2016
-Copyright (C) 2017
 
 Author: Antonin Portelli <antonin.portelli@me.com>
 
@@ -28,8 +27,8 @@ See the full license in the file "LICENSE" in the top level distribution directo
 *************************************************************************************/
 /*  END LEGAL */
 
-#ifndef Hadrons_MSource_SeqGamma_hpp_
+#ifndef Hadrons_SeqGamma_hpp_
-#define Hadrons_MSource_SeqGamma_hpp_
+#define Hadrons_SeqGamma_hpp_
 
 #include <Grid/Hadrons/Global.hpp>
 #include <Grid/Hadrons/Module.hpp>
@@ -72,7 +71,7 @@ template <typename FImpl>
 class TSeqGamma: public Module<SeqGammaPar>
 {
 public:
-    FGS_TYPE_ALIASES(FImpl,);
+    TYPE_ALIASES(FImpl,);
 public:
     // constructor
     TSeqGamma(const std::string name);
@@ -150,9 +149,9 @@ void TSeqGamma<FImpl>::execute(void)
     for(unsigned int mu = 0; mu < env().getNd(); mu++)
     {
         LatticeCoordinate(coor, mu);
-        ph = ph + p[mu]*coor*((1./(env().getGrid()->_fdimensions[mu])));
+        ph = ph + p[mu]*coor;
     }
-    ph = exp((Real)(2*M_PI)*i*ph);
+    ph = exp(i*ph);
     LatticeCoordinate(t, Tp);
     src = where((t >= par().tA) and (t <= par().tB), ph*(g*q), 0.*q);
 }
@@ -161,4 +160,4 @@ END_MODULE_NAMESPACE
 
 END_HADRONS_NAMESPACE
 
-#endif // Hadrons_MSource_SeqGamma_hpp_
+#endif // Hadrons_SeqGamma_hpp_

extras/Hadrons/Modules/MSource/Wall.hpp

@@ -1,147 +0,0 @@
-/*************************************************************************************
-
-Grid physics library, www.github.com/paboyle/Grid 
-
-Source file: extras/Hadrons/Modules/MSource/Wall.hpp
-
-Copyright (C) 2017
-
-Author: Andrew Lawson <andrew.lawson1991@gmail.com>
-
-This program is free software; you can redistribute it and/or modify
-it under the terms of the GNU General Public License as published by
-the Free Software Foundation; either version 2 of the License, or
-(at your option) any later version.
-
-This program is distributed in the hope that it will be useful,
-but WITHOUT ANY WARRANTY; without even the implied warranty of
-MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-GNU General Public License for more details.
-
-You should have received a copy of the GNU General Public License along
-with this program; if not, write to the Free Software Foundation, Inc.,
-51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
-
-See the full license in the file "LICENSE" in the top level distribution directory
-*************************************************************************************/
-/*  END LEGAL */
-
-#ifndef Hadrons_MSource_WallSource_hpp_
-#define Hadrons_MSource_WallSource_hpp_
-
-#include <Grid/Hadrons/Global.hpp>
-#include <Grid/Hadrons/Module.hpp>
-#include <Grid/Hadrons/ModuleFactory.hpp>
-
-BEGIN_HADRONS_NAMESPACE
-
-/*
- 
- Wall source
- -----------------------------
- * src_x = delta(x_3 - tW) * exp(i x.mom)
- 
- * options:
- - tW: source timeslice (integer)
- - mom: momentum insertion, space-separated float sequence (e.g ".1 .2 1. 0.")
- 
- */
-
-/******************************************************************************
- *                         Wall                                               *
- ******************************************************************************/
-BEGIN_MODULE_NAMESPACE(MSource)
-
-class WallPar: Serializable
-{
-public:
-    GRID_SERIALIZABLE_CLASS_MEMBERS(WallPar,
-                                    unsigned int, tW,
-                                    std::string, mom);
-};
-
-template <typename FImpl>
-class TWall: public Module<WallPar>
-{
-public:
-    FERM_TYPE_ALIASES(FImpl,);
-public:
-    // constructor
-    TWall(const std::string name);
-    // destructor
-    virtual ~TWall(void) = default;
-    // dependency relation
-    virtual std::vector<std::string> getInput(void);
-    virtual std::vector<std::string> getOutput(void);
-    // setup
-    virtual void setup(void);
-    // execution
-    virtual void execute(void);
-};
-
-MODULE_REGISTER_NS(Wall, TWall<FIMPL>, MSource);
-
-/******************************************************************************
- *                 TWall implementation                                       *
- ******************************************************************************/
-// constructor /////////////////////////////////////////////////////////////////
-template <typename FImpl>
-TWall<FImpl>::TWall(const std::string name)
-: Module<WallPar>(name)
-{}
-
-// dependencies/products ///////////////////////////////////////////////////////
-template <typename FImpl>
-std::vector<std::string> TWall<FImpl>::getInput(void)
-{
-    std::vector<std::string> in;
-    
-    return in;
-}
-
-template <typename FImpl>
-std::vector<std::string> TWall<FImpl>::getOutput(void)
-{
-    std::vector<std::string> out = {getName()};
-    
-    return out;
-}
-
-// setup ///////////////////////////////////////////////////////////////////////
-template <typename FImpl>
-void TWall<FImpl>::setup(void)
-{
-    env().template registerLattice<PropagatorField>(getName());
-}
-
-// execution ///////////////////////////////////////////////////////////////////
-template <typename FImpl>
-void TWall<FImpl>::execute(void)
-{    
-    LOG(Message) << "Generating wall source at t = " << par().tW 
-                 << " with momentum " << par().mom << std::endl;
-    
-    PropagatorField &src = *env().template createLattice<PropagatorField>(getName());
-    Lattice<iScalar<vInteger>> t(env().getGrid());
-    LatticeComplex             ph(env().getGrid()), coor(env().getGrid());
-    std::vector<Real>          p;
-    Complex                    i(0.0,1.0);
-    
-    p  = strToVec<Real>(par().mom);
-    ph = zero;
-    for(unsigned int mu = 0; mu < Nd; mu++)
-    {
-        LatticeCoordinate(coor, mu);
-        ph = ph + p[mu]*coor*((1./(env().getGrid()->_fdimensions[mu])));
-    }
-    ph = exp((Real)(2*M_PI)*i*ph);
-    LatticeCoordinate(t, Tp);
-    src = 1.;
-    src = where((t == par().tW), src*ph, 0.*src);
-}
-
-END_MODULE_NAMESPACE
-
-END_HADRONS_NAMESPACE
-
-#endif // Hadrons_MSource_WallSource_hpp_

extras/Hadrons/Modules/MSource/Z2.hpp

@@ -27,8 +27,8 @@ See the full license in the file "LICENSE" in the top level distribution directo
 *************************************************************************************/
 /*  END LEGAL */
 
-#ifndef Hadrons_MSource_Z2_hpp_
+#ifndef Hadrons_Z2_hpp_
-#define Hadrons_MSource_Z2_hpp_
+#define Hadrons_Z2_hpp_
 
 #include <Grid/Hadrons/Global.hpp>
 #include <Grid/Hadrons/Module.hpp>
@@ -67,7 +67,7 @@ template <typename FImpl>
 class TZ2: public Module<Z2Par>
 {
 public:
-    FERM_TYPE_ALIASES(FImpl,);
+    TYPE_ALIASES(FImpl,);
 public:
     // constructor
     TZ2(const std::string name);
@@ -82,8 +82,7 @@ public:
     virtual void execute(void);
 };
 
-MODULE_REGISTER_NS(Z2,       TZ2<FIMPL>,        MSource);
+MODULE_REGISTER_NS(Z2, TZ2<FIMPL>, MSource);
-MODULE_REGISTER_NS(ScalarZ2, TZ2<ScalarImplCR>, MSource);
 
 /******************************************************************************
  *                       TZ2 template implementation                          *
@@ -149,4 +148,4 @@ END_MODULE_NAMESPACE
 
 END_HADRONS_NAMESPACE
 
-#endif // Hadrons_MSource_Z2_hpp_
+#endif // Hadrons_Z2_hpp_

extras/Hadrons/Modules/Quark.hpp

@@ -1,5 +1,34 @@
-#ifndef Hadrons_MFermion_GaugeProp_hpp_
+/*************************************************************************************
-#define Hadrons_MFermion_GaugeProp_hpp_
+
+Grid physics library, www.github.com/paboyle/Grid 
+
+Source file: extras/Hadrons/Modules/Quark.hpp
+
+Copyright (C) 2015
+Copyright (C) 2016
+
+Author: Antonin Portelli <antonin.portelli@me.com>
+
+This program is free software; you can redistribute it and/or modify
+it under the terms of the GNU General Public License as published by
+the Free Software Foundation; either version 2 of the License, or
+(at your option) any later version.
+
+This program is distributed in the hope that it will be useful,
+but WITHOUT ANY WARRANTY; without even the implied warranty of
+MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+GNU General Public License for more details.
+
+You should have received a copy of the GNU General Public License along
+with this program; if not, write to the Free Software Foundation, Inc.,
+51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
+
+See the full license in the file "LICENSE" in the top level distribution directory
+*************************************************************************************/
+/*  END LEGAL */
+
+#ifndef Hadrons_Quark_hpp_
+#define Hadrons_Quark_hpp_
 
 #include <Grid/Hadrons/Global.hpp>
 #include <Grid/Hadrons/Module.hpp>
@@ -8,29 +37,27 @@
 BEGIN_HADRONS_NAMESPACE
 
 /******************************************************************************
- *                                GaugeProp                                   *
+ *                               TQuark                                       *
  ******************************************************************************/
-BEGIN_MODULE_NAMESPACE(MFermion)
+class QuarkPar: Serializable
-
-class GaugePropPar: Serializable
 {
 public:
-    GRID_SERIALIZABLE_CLASS_MEMBERS(GaugePropPar,
+    GRID_SERIALIZABLE_CLASS_MEMBERS(QuarkPar,
                                     std::string, source,
                                     std::string, solver);
 };
 
 template <typename FImpl>
-class TGaugeProp: public Module<GaugePropPar>
+class TQuark: public Module<QuarkPar>
 {
 public:
-    FGS_TYPE_ALIASES(FImpl,);
+    TYPE_ALIASES(FImpl,);
 public:
     // constructor
-    TGaugeProp(const std::string name);
+    TQuark(const std::string name);
     // destructor
-    virtual ~TGaugeProp(void) = default;
+    virtual ~TQuark(void) = default;
-    // dependency relation
+    // dependencies/products
     virtual std::vector<std::string> getInput(void);
     virtual std::vector<std::string> getOutput(void);
     // setup
@@ -42,20 +69,20 @@ private:
     SolverFn     *solver_{nullptr};
 };
 
-MODULE_REGISTER_NS(GaugeProp, TGaugeProp<FIMPL>, MFermion);
+MODULE_REGISTER(Quark, TQuark<FIMPL>);
 
 /******************************************************************************
- *                      TGaugeProp implementation                             *
+ *                          TQuark implementation                             *
  ******************************************************************************/
 // constructor /////////////////////////////////////////////////////////////////
 template <typename FImpl>
-TGaugeProp<FImpl>::TGaugeProp(const std::string name)
+TQuark<FImpl>::TQuark(const std::string name)
-: Module<GaugePropPar>(name)
+: Module(name)
 {}
 
 // dependencies/products ///////////////////////////////////////////////////////
 template <typename FImpl>
-std::vector<std::string> TGaugeProp<FImpl>::getInput(void)
+std::vector<std::string> TQuark<FImpl>::getInput(void)
 {
     std::vector<std::string> in = {par().source, par().solver};
     
@@ -63,7 +90,7 @@ std::vector<std::string> TGaugeProp<FImpl>::getInput(void)
 }
 
 template <typename FImpl>
-std::vector<std::string> TGaugeProp<FImpl>::getOutput(void)
+std::vector<std::string> TQuark<FImpl>::getOutput(void)
 {
     std::vector<std::string> out = {getName(), getName() + "_5d"};
     
@@ -72,7 +99,7 @@ std::vector<std::string> TGaugeProp<FImpl>::getOutput(void)
 
 // setup ///////////////////////////////////////////////////////////////////////
 template <typename FImpl>
-void TGaugeProp<FImpl>::setup(void)
+void TQuark<FImpl>::setup(void)
 {
     Ls_ = env().getObjectLs(par().solver);
     env().template registerLattice<PropagatorField>(getName());
@@ -84,13 +111,13 @@ void TGaugeProp<FImpl>::setup(void)
 
 // execution ///////////////////////////////////////////////////////////////////
 template <typename FImpl>
-void TGaugeProp<FImpl>::execute(void)
+void TQuark<FImpl>::execute(void)
 {
     LOG(Message) << "Computing quark propagator '" << getName() << "'"
-    << std::endl;
+                 << std::endl;
     
     FermionField    source(env().getGrid(Ls_)), sol(env().getGrid(Ls_)),
-    tmp(env().getGrid());
+                    tmp(env().getGrid());
     std::string     propName = (Ls_ == 1) ? getName() : (getName() + "_5d");
     PropagatorField &prop    = *env().template createLattice<PropagatorField>(propName);
     PropagatorField &fullSrc = *env().template getObject<PropagatorField>(par().source);
@@ -101,7 +128,7 @@ void TGaugeProp<FImpl>::execute(void)
     }
     
     LOG(Message) << "Inverting using solver '" << par().solver
-    << "' on source '" << par().source << "'" << std::endl;
+                 << "' on source '" << par().source << "'" << std::endl;
     for (unsigned int s = 0; s < Ns; ++s)
     for (unsigned int c = 0; c < Nc; ++c)
     {
@@ -143,18 +170,16 @@ void TGaugeProp<FImpl>::execute(void)
         if (Ls_ > 1)
         {
             PropagatorField &p4d =
-            *env().template getObject<PropagatorField>(getName());
+                *env().template getObject<PropagatorField>(getName());
             
             axpby_ssp_pminus(sol, 0., sol, 1., sol, 0, 0);
-            axpby_ssp_pplus(sol, 1., sol, 1., sol, 0, Ls_-1);
+            axpby_ssp_pplus(sol, 0., sol, 1., sol, 0, Ls_-1);
             ExtractSlice(tmp, sol, 0, 0);
             FermToProp(p4d, tmp, s, c);
         }
     }
 }
 
-END_MODULE_NAMESPACE
-
 END_HADRONS_NAMESPACE
 
-#endif // Hadrons_MFermion_GaugeProp_hpp_
+#endif // Hadrons_Quark_hpp_

extras/Hadrons/Modules/templates/Module_in_NS.hpp.template

@@ -1,5 +1,5 @@
-#ifndef Hadrons____NAMESPACE_______FILEBASENAME____hpp_
+#ifndef Hadrons____FILEBASENAME____hpp_
-#define Hadrons____NAMESPACE_______FILEBASENAME____hpp_
+#define Hadrons____FILEBASENAME____hpp_
 
 #include <Grid/Hadrons/Global.hpp>
 #include <Grid/Hadrons/Module.hpp>
@@ -41,4 +41,4 @@ END_MODULE_NAMESPACE
 
 END_HADRONS_NAMESPACE
 
-#endif // Hadrons____NAMESPACE_______FILEBASENAME____hpp_
+#endif // Hadrons____FILEBASENAME____hpp_

extras/Hadrons/Modules/templates/Module_tmp_in_NS.hpp.template

@@ -1,5 +1,5 @@
-#ifndef Hadrons____NAMESPACE_______FILEBASENAME____hpp_
+#ifndef Hadrons____FILEBASENAME____hpp_
-#define Hadrons____NAMESPACE_______FILEBASENAME____hpp_
+#define Hadrons____FILEBASENAME____hpp_
 
 #include <Grid/Hadrons/Global.hpp>
 #include <Grid/Hadrons/Module.hpp>
@@ -82,4 +82,4 @@ END_MODULE_NAMESPACE
 
 END_HADRONS_NAMESPACE
 
-#endif // Hadrons____NAMESPACE_______FILEBASENAME____hpp_
+#endif // Hadrons____FILEBASENAME____hpp_

extras/Hadrons/modules.inc

@@ -1,38 +1,19 @@
 modules_cc =\
-  Modules/MContraction/WeakHamiltonianEye.cc \
-  Modules/MContraction/WeakHamiltonianNonEye.cc \
-  Modules/MContraction/WeakNeutral4ptDisc.cc \
   Modules/MGauge/Load.cc \
   Modules/MGauge/Random.cc \
-  Modules/MGauge/StochEm.cc \
+  Modules/MGauge/Unit.cc
-  Modules/MGauge/Unit.cc \
-  Modules/MScalar/ChargedProp.cc \
-  Modules/MScalar/FreeProp.cc
 
 modules_hpp =\
   Modules/MAction/DWF.hpp \
   Modules/MAction/Wilson.hpp \
   Modules/MContraction/Baryon.hpp \
-  Modules/MContraction/DiscLoop.hpp \
-  Modules/MContraction/Gamma3pt.hpp \
   Modules/MContraction/Meson.hpp \
-  Modules/MContraction/WeakHamiltonian.hpp \
-  Modules/MContraction/WeakHamiltonianEye.hpp \
-  Modules/MContraction/WeakHamiltonianNonEye.hpp \
-  Modules/MContraction/WeakNeutral4ptDisc.hpp \
-  Modules/MFermion/GaugeProp.hpp \
   Modules/MGauge/Load.hpp \
   Modules/MGauge/Random.hpp \
-  Modules/MGauge/StochEm.hpp \
   Modules/MGauge/Unit.hpp \
-  Modules/MLoop/NoiseLoop.hpp \
-  Modules/MScalar/ChargedProp.hpp \
-  Modules/MScalar/FreeProp.hpp \
-  Modules/MScalar/Scalar.hpp \
-  Modules/MSink/Point.hpp \
   Modules/MSolver/RBPrecCG.hpp \
   Modules/MSource/Point.hpp \
   Modules/MSource/SeqGamma.hpp \
-  Modules/MSource/Wall.hpp \
+  Modules/MSource/Z2.hpp \
-  Modules/MSource/Z2.hpp
+  Modules/Quark.hpp
 

extras/qed-fvol/Global.cc

@@ -1,11 +0,0 @@
-#include <qed-fvol/Global.hpp>
-
-using namespace Grid;
-using namespace QCD;
-using namespace QedFVol;
-
-QedFVolLogger QedFVol::QedFVolLogError(1,"Error");
-QedFVolLogger QedFVol::QedFVolLogWarning(1,"Warning");
-QedFVolLogger QedFVol::QedFVolLogMessage(1,"Message");
-QedFVolLogger QedFVol::QedFVolLogIterative(1,"Iterative");
-QedFVolLogger QedFVol::QedFVolLogDebug(1,"Debug");

extras/qed-fvol/Global.hpp

@@ -1,42 +0,0 @@
-#ifndef QedFVol_Global_hpp_
-#define QedFVol_Global_hpp_
-
-#include <Grid/Grid.h>
-
-#define BEGIN_QEDFVOL_NAMESPACE \
-namespace Grid {\
-using namespace QCD;\
-namespace QedFVol {\
-using Grid::operator<<;
-#define END_QEDFVOL_NAMESPACE }}
-
-/* the 'using Grid::operator<<;' statement prevents a very nasty compilation
- * error with GCC (clang compiles fine without it).
- */
-
-BEGIN_QEDFVOL_NAMESPACE
-
-class QedFVolLogger: public Logger
-{
-public:
-    QedFVolLogger(int on, std::string nm): Logger("QedFVol", on, nm,
-                                                  GridLogColours, "BLACK"){};
-};
-
-#define LOG(channel) std::cout << QedFVolLog##channel
-#define QEDFVOL_ERROR(msg)\
-LOG(Error) << msg << " (" << __FUNCTION__ << " at " << __FILE__ << ":"\
-           << __LINE__ << ")" << std::endl;\
-abort();
-
-#define DEBUG_VAR(var) LOG(Debug) << #var << "= " << (var) << std::endl;
-
-extern QedFVolLogger QedFVolLogError;
-extern QedFVolLogger QedFVolLogWarning;
-extern QedFVolLogger QedFVolLogMessage;
-extern QedFVolLogger QedFVolLogIterative;
-extern QedFVolLogger QedFVolLogDebug;
-
-END_QEDFVOL_NAMESPACE
-
-#endif // QedFVol_Global_hpp_

extras/qed-fvol/Makefile.am

@@ -1,9 +0,0 @@
-AM_CXXFLAGS += -I$(top_srcdir)/extras
-
-bin_PROGRAMS = qed-fvol
-
-qed_fvol_SOURCES =   \
-    qed-fvol.cc      \
-    Global.cc
-
-qed_fvol_LDADD   = -lGrid

extras/qed-fvol/WilsonLoops.h

@@ -1,265 +0,0 @@
-#ifndef QEDFVOL_WILSONLOOPS_H
-#define QEDFVOL_WILSONLOOPS_H
-
-#include <Global.hpp>
-
-BEGIN_QEDFVOL_NAMESPACE
-
-template <class Gimpl> class NewWilsonLoops : public Gimpl {
-public:
-  INHERIT_GIMPL_TYPES(Gimpl);
-
-  typedef typename Gimpl::GaugeLinkField GaugeMat;
-  typedef typename Gimpl::GaugeField GaugeLorentz;
-
-  //////////////////////////////////////////////////
-  // directed plaquette oriented in mu,nu plane
-  //////////////////////////////////////////////////
-  static void dirPlaquette(GaugeMat &plaq, const std::vector<GaugeMat> &U,
-                           const int mu, const int nu) {
-    // Annoyingly, must use either scope resolution to find dependent base
-    // class,
-    // or this-> ; there is no "this" in a static method. This forces explicit
-    // Gimpl scope
-    // resolution throughout the usage in this file, and rather defeats the
-    // purpose of deriving
-    // from Gimpl.
-    plaq = Gimpl::CovShiftBackward(
-        U[mu], mu, Gimpl::CovShiftBackward(
-                       U[nu], nu, Gimpl::CovShiftForward(U[mu], mu, U[nu])));
-  }
-  //////////////////////////////////////////////////
-  // trace of directed plaquette oriented in mu,nu plane
-  //////////////////////////////////////////////////
-  static void traceDirPlaquette(LatticeComplex &plaq,
-                                const std::vector<GaugeMat> &U, const int mu,
-                                const int nu) {
-    GaugeMat sp(U[0]._grid);
-    dirPlaquette(sp, U, mu, nu);
-    plaq = trace(sp);
-  }
-  //////////////////////////////////////////////////
-  // sum over all planes of plaquette
-  //////////////////////////////////////////////////
-  static void sitePlaquette(LatticeComplex &Plaq,
-                            const std::vector<GaugeMat> &U) {
-    LatticeComplex sitePlaq(U[0]._grid);
-    Plaq = zero;
-    for (int mu = 1; mu < U[0]._grid->_ndimension; mu++) {
-      for (int nu = 0; nu < mu; nu++) {
-        traceDirPlaquette(sitePlaq, U, mu, nu);
-        Plaq = Plaq + sitePlaq;
-      }
-    }
-  }
-  //////////////////////////////////////////////////
-  // sum over all x,y,z,t and over all planes of plaquette
-  //////////////////////////////////////////////////
-  static Real sumPlaquette(const GaugeLorentz &Umu) {
-    std::vector<GaugeMat> U(4, Umu._grid);
-
-    for (int mu = 0; mu < Umu._grid->_ndimension; mu++) {
-      U[mu] = PeekIndex<LorentzIndex>(Umu, mu);
-    }
-
-    LatticeComplex Plaq(Umu._grid);
-
-    sitePlaquette(Plaq, U);
-
-    TComplex Tp = sum(Plaq);
-    Complex p = TensorRemove(Tp);
-    return p.real();
-  }
-  //////////////////////////////////////////////////
-  // average over all x,y,z,t and over all planes of plaquette
-  //////////////////////////////////////////////////
-  static Real avgPlaquette(const GaugeLorentz &Umu) {
-    int ndim = Umu._grid->_ndimension;
-    Real sumplaq = sumPlaquette(Umu);
-    Real vol = Umu._grid->gSites();
-    Real faces = (1.0 * ndim * (ndim - 1)) / 2.0;
-    return sumplaq / vol / faces / Nc; // Nc dependent... FIXME
-  }
-
-  //////////////////////////////////////////////////
-  // Wilson loop of size (R1, R2), oriented in mu,nu plane
-  //////////////////////////////////////////////////
-  static void wilsonLoop(GaugeMat &wl, const std::vector<GaugeMat> &U,
-                           const int Rmu, const int Rnu,
-                           const int mu, const int nu) {
-    wl = U[nu];
-
-    for(int i = 0; i < Rnu-1; i++){
-      wl = Gimpl::CovShiftForward(U[nu], nu, wl);
-    }
-
-    for(int i = 0; i < Rmu; i++){
-      wl = Gimpl::CovShiftForward(U[mu], mu, wl);
-    }
-
-    for(int i = 0; i < Rnu; i++){
-      wl = Gimpl::CovShiftBackward(U[nu], nu, wl);
-    }
-
-    for(int i = 0; i < Rmu; i++){
-      wl = Gimpl::CovShiftBackward(U[mu], mu, wl);
-    }
-  }
-  //////////////////////////////////////////////////
-  // trace of Wilson Loop oriented in mu,nu plane
-  //////////////////////////////////////////////////
-  static void traceWilsonLoop(LatticeComplex &wl,
-                                const std::vector<GaugeMat> &U,
-                                const int Rmu, const int Rnu,
-                                const int mu, const int nu) {
-    GaugeMat sp(U[0]._grid);
-    wilsonLoop(sp, U, Rmu, Rnu, mu, nu);
-    wl = trace(sp);
-  }
-  //////////////////////////////////////////////////
-  // sum over all planes of Wilson loop
-  //////////////////////////////////////////////////
-  static void siteWilsonLoop(LatticeComplex &Wl,
-                            const std::vector<GaugeMat> &U,
-                            const int R1, const int R2) {
-    LatticeComplex siteWl(U[0]._grid);
-    Wl = zero;
-    for (int mu = 1; mu < U[0]._grid->_ndimension; mu++) {
-      for (int nu = 0; nu < mu; nu++) {
-        traceWilsonLoop(siteWl, U, R1, R2, mu, nu);
-        Wl = Wl + siteWl;
-        traceWilsonLoop(siteWl, U, R2, R1, mu, nu);
-        Wl = Wl + siteWl;
-      }
-    }
-  }
-  //////////////////////////////////////////////////
-  // sum over planes of Wilson loop with length R1
-  // in the time direction
-  //////////////////////////////////////////////////
-  static void siteTimelikeWilsonLoop(LatticeComplex &Wl,
-                            const std::vector<GaugeMat> &U,
-                            const int R1, const int R2) {
-    LatticeComplex siteWl(U[0]._grid);
-
-    int ndim = U[0]._grid->_ndimension;
-
-    Wl = zero;
-    for (int nu = 0; nu < ndim - 1; nu++) {
-      traceWilsonLoop(siteWl, U, R1, R2, ndim-1, nu);
-      Wl = Wl + siteWl;
-    }
-  }
-  //////////////////////////////////////////////////
-  // sum Wilson loop over all planes orthogonal to the time direction
-  //////////////////////////////////////////////////
-  static void siteSpatialWilsonLoop(LatticeComplex &Wl,
-                            const std::vector<GaugeMat> &U,
-                            const int R1, const int R2) {
-    LatticeComplex siteWl(U[0]._grid);
-
-    Wl = zero;
-    for (int mu = 1; mu < U[0]._grid->_ndimension - 1; mu++) {
-      for (int nu = 0; nu < mu; nu++) {
-        traceWilsonLoop(siteWl, U, R1, R2, mu, nu);
-        Wl = Wl + siteWl;
-        traceWilsonLoop(siteWl, U, R2, R1, mu, nu);
-        Wl = Wl + siteWl;
-      }
-    }
-  }
-  //////////////////////////////////////////////////
-  // sum over all x,y,z,t and over all planes of Wilson loop
-  //////////////////////////////////////////////////
-  static Real sumWilsonLoop(const GaugeLorentz &Umu,
-                            const int R1, const int R2) {
-    std::vector<GaugeMat> U(4, Umu._grid);
-
-    for (int mu = 0; mu < Umu._grid->_ndimension; mu++) {
-      U[mu] = PeekIndex<LorentzIndex>(Umu, mu);
-    }
-
-    LatticeComplex Wl(Umu._grid);
-
-    siteWilsonLoop(Wl, U, R1, R2);
-
-    TComplex Tp = sum(Wl);
-    Complex p = TensorRemove(Tp);
-    return p.real();
-  }
-  //////////////////////////////////////////////////
-  // sum over all x,y,z,t and over all planes of timelike Wilson loop
-  //////////////////////////////////////////////////
-  static Real sumTimelikeWilsonLoop(const GaugeLorentz &Umu,
-                            const int R1, const int R2) {
-    std::vector<GaugeMat> U(4, Umu._grid);
-
-    for (int mu = 0; mu < Umu._grid->_ndimension; mu++) {
-      U[mu] = PeekIndex<LorentzIndex>(Umu, mu);
-    }
-
-    LatticeComplex Wl(Umu._grid);
-
-    siteTimelikeWilsonLoop(Wl, U, R1, R2);
-
-    TComplex Tp = sum(Wl);
-    Complex p = TensorRemove(Tp);
-    return p.real();
-  }
-  //////////////////////////////////////////////////
-  // sum over all x,y,z,t and over all planes of spatial Wilson loop
-  //////////////////////////////////////////////////
-  static Real sumSpatialWilsonLoop(const GaugeLorentz &Umu,
-                            const int R1, const int R2) {
-    std::vector<GaugeMat> U(4, Umu._grid);
-
-    for (int mu = 0; mu < Umu._grid->_ndimension; mu++) {
-      U[mu] = PeekIndex<LorentzIndex>(Umu, mu);
-    }
-
-    LatticeComplex Wl(Umu._grid);
-
-    siteSpatialWilsonLoop(Wl, U, R1, R2);
-
-    TComplex Tp = sum(Wl);
-    Complex p = TensorRemove(Tp);
-    return p.real();
-  }
-  //////////////////////////////////////////////////
-  // average over all x,y,z,t and over all planes of Wilson loop
-  //////////////////////////////////////////////////
-  static Real avgWilsonLoop(const GaugeLorentz &Umu,
-                            const int R1, const int R2) {
-    int ndim = Umu._grid->_ndimension;
-    Real sumWl = sumWilsonLoop(Umu, R1, R2);
-    Real vol = Umu._grid->gSites();
-    Real faces = 1.0 * ndim * (ndim - 1);
-    return sumWl / vol / faces / Nc; // Nc dependent... FIXME
-  }
-  //////////////////////////////////////////////////
-  // average over all x,y,z,t and over all planes of timelike Wilson loop
-  //////////////////////////////////////////////////
-  static Real avgTimelikeWilsonLoop(const GaugeLorentz &Umu,
-                            const int R1, const int R2) {
-    int ndim = Umu._grid->_ndimension;
-    Real sumWl = sumTimelikeWilsonLoop(Umu, R1, R2);
-    Real vol = Umu._grid->gSites();
-    Real faces = 1.0 * (ndim - 1);
-    return sumWl / vol / faces / Nc; // Nc dependent... FIXME
-  }
-  //////////////////////////////////////////////////
-  // average over all x,y,z,t and over all planes of spatial Wilson loop
-  //////////////////////////////////////////////////
-  static Real avgSpatialWilsonLoop(const GaugeLorentz &Umu,
-                            const int R1, const int R2) {
-    int ndim = Umu._grid->_ndimension;
-    Real sumWl = sumSpatialWilsonLoop(Umu, R1, R2);
-    Real vol = Umu._grid->gSites();
-    Real faces = 1.0 * (ndim - 1) * (ndim - 2);
-    return sumWl / vol / faces / Nc; // Nc dependent... FIXME
-  }
-};
-
-END_QEDFVOL_NAMESPACE
-
-#endif // QEDFVOL_WILSONLOOPS_H

extras/qed-fvol/qed-fvol.cc

@@ -1,88 +0,0 @@
-#include <Global.hpp>
-#include <WilsonLoops.h>
-
-using namespace Grid;
-using namespace QCD;
-using namespace QedFVol;
-
-typedef PeriodicGaugeImpl<QedGimplR>    QedPeriodicGimplR;
-typedef PhotonR::GaugeField             EmField;
-typedef PhotonR::GaugeLinkField         EmComp;
-
-const int NCONFIGS = 10;
-const int NWILSON = 10;
-
-int main(int argc, char *argv[])
-{
-    // parse command line
-    std::string parameterFileName;
-    
-    if (argc < 2)
-    {
-        std::cerr << "usage: " << argv[0] << " <parameter file> [Grid options]";
-        std::cerr << std::endl;
-        std::exit(EXIT_FAILURE);
-    }
-    parameterFileName = argv[1];
-    
-    // initialization
-    Grid_init(&argc, &argv);
-    QedFVolLogError.Active(GridLogError.isActive());
-    QedFVolLogWarning.Active(GridLogWarning.isActive());
-    QedFVolLogMessage.Active(GridLogMessage.isActive());
-    QedFVolLogIterative.Active(GridLogIterative.isActive());
-    QedFVolLogDebug.Active(GridLogDebug.isActive());
-    LOG(Message) << "Grid initialized" << std::endl;
-    
-    // QED stuff
-    std::vector<int> latt_size   = GridDefaultLatt();
-    std::vector<int> simd_layout = GridDefaultSimd(4, vComplex::Nsimd());
-    std::vector<int> mpi_layout  = GridDefaultMpi();
-    GridCartesian    grid(latt_size,simd_layout,mpi_layout);
-    GridParallelRNG  pRNG(&grid);
-    PhotonR          photon(PhotonR::Gauge::feynman,
-                            PhotonR::ZmScheme::qedL);
-    EmField          a(&grid);
-    EmField          expA(&grid);
-
-    Complex imag_unit(0, 1);
-
-    Real wlA;
-    std::vector<Real> logWlAvg(NWILSON, 0.0), logWlTime(NWILSON, 0.0), logWlSpace(NWILSON, 0.0);
-
-    pRNG.SeedRandomDevice();
-
-    LOG(Message) << "Wilson loop calculation beginning" << std::endl;
-    for(int ic = 0; ic < NCONFIGS; ic++){
-        LOG(Message) << "Configuration " << ic <<std::endl;
-        photon.StochasticField(a, pRNG);
-
-        // Exponentiate photon field
-        expA = exp(imag_unit*a);
-
-        // Calculate Wilson loops
-        for(int iw=1; iw<=NWILSON; iw++){
-            wlA = NewWilsonLoops<QedPeriodicGimplR>::avgWilsonLoop(expA, iw, iw) * 3;
-            logWlAvg[iw-1] -= 2*log(wlA);
-            wlA = NewWilsonLoops<QedPeriodicGimplR>::avgTimelikeWilsonLoop(expA, iw, iw) * 3;
-            logWlTime[iw-1] -= 2*log(wlA);
-            wlA = NewWilsonLoops<QedPeriodicGimplR>::avgSpatialWilsonLoop(expA, iw, iw) * 3;
-            logWlSpace[iw-1] -= 2*log(wlA);
-        }
-    }
-    LOG(Message) << "Wilson loop calculation completed" << std::endl;
-    
-    // Calculate Wilson loops
-    for(int iw=1; iw<=10; iw++){
-        LOG(Message) << iw << 'x' << iw << " Wilson loop" << std::endl;
-        LOG(Message) << "-2log(W) average: " << logWlAvg[iw-1]/NCONFIGS << std::endl;
-        LOG(Message) << "-2log(W) timelike: " << logWlTime[iw-1]/NCONFIGS << std::endl;
-        LOG(Message) << "-2log(W) spatial: " << logWlSpace[iw-1]/NCONFIGS << std::endl;
-    }
-
-    // epilogue
-    LOG(Message) << "Grid is finalizing now" << std::endl;
-    Grid_finalize();
-    
-    return EXIT_SUCCESS;
-}

gcc-bug-report/README

@@ -20,17 +20,4 @@ The simple testcase in this directory is the submitted bug report that encapsula
 problem. The test case works with icpc and with clang++, but fails consistently on g++
 current variants.
 
-Peter
+Peter
-
-
-************
-
-Second GCC bug reported, see Issue 100.
-
-https://wandbox.org/permlink/tzssJza6R9XnqANw
-https://gcc.gnu.org/bugzilla/show_bug.cgi?id=80652
-
-Getting Travis fails under gcc-5 for Test_simd, now that I added more comprehensive testing to the
-CI test suite. The limitations of Travis runtime limits & weak cores are being shown.
-
-Travis uses 5.4.1 for g++-5.

grid-config.in

@@ -1,86 +0,0 @@
-#! /bin/sh
-
-prefix=@prefix@
-exec_prefix=@exec_prefix@
-includedir=@includedir@
-
-usage()
-{
-  cat <<EOF
-Usage: grid-config [OPTION]
-
-Known values for OPTION are:
-
-  --prefix     show Grid installation prefix
-  --cxxflags   print pre-processor and compiler flags
-  --ldflags    print library linking flags
-  --libs       print library linking information
-  --summary    print full build summary
-  --help       display this help and exit
-  --version    output version information
-  --git        print git revision
-
-EOF
-  
-  exit $1
-}
-
-if test $# -eq 0; then
-  usage 1
-fi
-
-cflags=false
-libs=false
-
-while test $# -gt 0; do
-  case "$1" in
-    -*=*) optarg=`echo "$1" | sed 's/[-_a-zA-Z0-9]*=//'` ;;
-    *) optarg= ;;
-  esac
-  
-  case "$1" in
-    --prefix)
-      echo $prefix
-    ;;
-    
-    --version)
-      echo @VERSION@
-      exit 0
-    ;;
-    
-    --git)
-      echo "@GRID_BRANCH@ @GRID_SHA@"
-      exit 0
-    ;;
-    
-    --help)
-      usage 0
-    ;;
-    
-    --cxxflags)
-      echo @GRID_CXXFLAGS@
-    ;;
-    
-    --ldflags)
-      echo @GRID_LDFLAGS@
-    ;;
-    
-    --libs)
-      echo @GRID_LIBS@
-    ;;
-    
-    --summary)
-      echo ""
-      echo "@GRID_SUMMARY@"
-      echo ""
-    ;;
-    
-    *)
-      usage
-      exit 1
-    ;;
-  esac
-  shift
-done
-
-exit 0

lib/Algorithms.h

@@ -1,6 +1,6 @@
     /*************************************************************************************
 
-    Grid physics library, www.github.com/paboyle/Grid
+    Grid physics library, www.github.com/paboyle/Grid 
 
     Source file: ./lib/Algorithms.h
 
@@ -37,24 +37,39 @@ Author: Peter Boyle <paboyle@ph.ed.ac.uk>
 #include <Grid/algorithms/approx/Chebyshev.h>
 #include <Grid/algorithms/approx/Remez.h>
 #include <Grid/algorithms/approx/MultiShiftFunction.h>
-#include <Grid/algorithms/approx/Forecast.h>
 
 #include <Grid/algorithms/iterative/ConjugateGradient.h>
+#include <Grid/algorithms/iterative/ConjugateGradientShifted.h>
 #include <Grid/algorithms/iterative/ConjugateResidual.h>
 #include <Grid/algorithms/iterative/NormalEquations.h>
 #include <Grid/algorithms/iterative/SchurRedBlack.h>
+
 #include <Grid/algorithms/iterative/ConjugateGradientMultiShift.h>
 #include <Grid/algorithms/iterative/ConjugateGradientMixedPrec.h>
-#include <Grid/algorithms/iterative/BlockConjugateGradient.h>
-#include <Grid/algorithms/iterative/ConjugateGradientReliableUpdate.h>
-#include <Grid/algorithms/iterative/ImplicitlyRestartedLanczos.h>
-#include <Grid/algorithms/CoarsenedMatrix.h>
-#include <Grid/algorithms/FFT.h>
 
+// Lanczos support
+#include <Grid/algorithms/iterative/MatrixUtils.h>
+#include <Grid/algorithms/iterative/ImplicitlyRestartedLanczos.h>
+
+#include <Grid/algorithms/CoarsenedMatrix.h>
+
+// Eigen/lanczos
 // EigCg
+// MCR
 // Pcg
+// Multishift CG
 // Hdcg
 // GCR
 // etc..
 
+// integrator/Leapfrog
+// integrator/Omelyan
+// integrator/ForceGradient
+
+// montecarlo/hmc
+// montecarlo/rhmc
+// montecarlo/metropolis
+// etc...
+
+
 #endif

lib/AlignedAllocator.cc

@@ -0,0 +1,65 @@
+
+
+
+#include <Grid/Grid.h>
+
+namespace Grid {
+
+int PointerCache::victim;
+
+  PointerCache::PointerCacheEntry PointerCache::Entries[PointerCache::Ncache];
+
+void *PointerCache::Insert(void *ptr,size_t bytes) {
+
+  if (bytes < 4096 ) return NULL;
+
+#ifdef _OPENMP
+  assert(omp_in_parallel()==0);
+#endif 
+  void * ret = NULL;
+  int v = -1;
+
+  for(int e=0;e<Ncache;e++) {
+    if ( Entries[e].valid==0 ) {
+      v=e; 
+      break;
+    }
+  }
+
+  if ( v==-1 ) {
+    v=victim;
+    victim = (victim+1)%Ncache;
+  }
+
+  if ( Entries[v].valid ) {
+    ret = Entries[v].address;
+    Entries[v].valid = 0;
+    Entries[v].address = NULL;
+    Entries[v].bytes = 0;
+  }
+
+  Entries[v].address=ptr;
+  Entries[v].bytes  =bytes;
+  Entries[v].valid  =1;
+
+  return ret;
+}
+
+void *PointerCache::Lookup(size_t bytes) {
+
+ if (bytes < 4096 ) return NULL;
+
+#ifdef _OPENMP
+  assert(omp_in_parallel()==0);
+#endif 
+
+  for(int e=0;e<Ncache;e++){
+    if ( Entries[e].valid && ( Entries[e].bytes == bytes ) ) {
+      Entries[e].valid = 0;
+      return Entries[e].address;
+    }
+  }
+  return NULL;
+}
+
+}

lib/AlignedAllocator.h

@@ -64,8 +64,6 @@ namespace Grid {
 
   };
 
-  void check_huge_pages(void *Buf,uint64_t BYTES);
-
 ////////////////////////////////////////////////////////////////////
 // A lattice of something, but assume the something is SIMDized.
 ////////////////////////////////////////////////////////////////////
@@ -94,34 +92,18 @@ public:
     size_type bytes = __n*sizeof(_Tp);
 
     _Tp *ptr = (_Tp *) PointerCache::Lookup(bytes);
-    //    if ( ptr != NULL ) 
+    
-    //      std::cout << "alignedAllocator "<<__n << " cache hit "<< std::hex << ptr <<std::dec <<std::endl;
-
-    //////////////////
-    // Hack 2MB align; could make option probably doesn't need configurability
-    //////////////////
-//define GRID_ALLOC_ALIGN (128)
-#define GRID_ALLOC_ALIGN (2*1024*1024)
 #ifdef HAVE_MM_MALLOC_H
-    if ( ptr == (_Tp *) NULL ) ptr = (_Tp *) _mm_malloc(bytes,GRID_ALLOC_ALIGN);
+    if ( ptr == (_Tp *) NULL ) ptr = (_Tp *) _mm_malloc(bytes,128);
 #else
-    if ( ptr == (_Tp *) NULL ) ptr = (_Tp *) memalign(GRID_ALLOC_ALIGN,bytes);
+    if ( ptr == (_Tp *) NULL ) ptr = (_Tp *) memalign(128,bytes);
 #endif
-    //    std::cout << "alignedAllocator " << std::hex << ptr <<std::dec <<std::endl;
+
-    // First touch optimise in threaded loop
-    uint8_t *cp = (uint8_t *)ptr;
-#ifdef GRID_OMP
-#pragma omp parallel for
-#endif
-    for(size_type n=0;n<bytes;n+=4096){
-      cp[n]=0;
-    }
     return ptr;
   }
 
   void deallocate(pointer __p, size_type __n) { 
     size_type bytes = __n * sizeof(_Tp);
-
     pointer __freeme = (pointer)PointerCache::Insert((void *)__p,bytes);
 
 #ifdef HAVE_MM_MALLOC_H
@@ -200,19 +182,10 @@ public:
   pointer allocate(size_type __n, const void* _p= 0) 
   {
 #ifdef HAVE_MM_MALLOC_H
-    _Tp * ptr = (_Tp *) _mm_malloc(__n*sizeof(_Tp),GRID_ALLOC_ALIGN);
+    _Tp * ptr = (_Tp *) _mm_malloc(__n*sizeof(_Tp),128);
 #else
-    _Tp * ptr = (_Tp *) memalign(GRID_ALLOC_ALIGN,__n*sizeof(_Tp));
+    _Tp * ptr = (_Tp *) memalign(128,__n*sizeof(_Tp));
 #endif
-    size_type bytes = __n*sizeof(_Tp);
-    uint8_t *cp = (uint8_t *)ptr;
-    if ( ptr ) { 
-    // One touch per 4k page, static OMP loop to catch same loop order
-#pragma omp parallel for schedule(static)
-      for(size_type n=0;n<bytes;n+=4096){
-	cp[n]=0;
-      }
-    }
     return ptr;
   }
   void deallocate(pointer __p, size_type) { 

lib/Cshift.h

@@ -42,7 +42,7 @@ Author: Peter Boyle <paboyle@ph.ed.ac.uk>
 #include <Grid/cshift/Cshift_mpi.h>
 #endif 
 
-#ifdef GRID_COMMS_MPIT
+#ifdef GRID_COMMS_MPI3L
 #include <Grid/cshift/Cshift_mpi.h>
 #endif 
 

lib/DisableWarnings.h

@@ -1,37 +0,0 @@
-/*************************************************************************************
-
-Grid physics library, www.github.com/paboyle/Grid
-
-Source file: ./lib/DisableWarnings.h
-
-Copyright (C) 2016
-
-Author: Guido Cossu <guido.cossu@ed.ac.uk>
-
-This program is free software; you can redistribute it and/or modify
-it under the terms of the GNU General Public License as published by
-the Free Software Foundation; either version 2 of the License, or
-(at your option) any later version.
-
-This program is distributed in the hope that it will be useful,
-but WITHOUT ANY WARRANTY; without even the implied warranty of
-MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-GNU General Public License for more details.
-
-You should have received a copy of the GNU General Public License along
-with this program; if not, write to the Free Software Foundation, Inc.,
-51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
-
-See the full license in the file "LICENSE" in the top level distribution
-directory
-*************************************************************************************/
-/*  END LEGAL */
-
-#ifndef DISABLE_WARNINGS_H
-#define DISABLE_WARNINGS_H
-
- //disables and intel compiler specific warning (in json.hpp)
-#pragma warning disable 488  
-
-
-#endif

lib/FFT.h

@@ -230,7 +230,6 @@ namespace Grid {
       // Barrel shift and collect global pencil
       std::vector<int> lcoor(Nd), gcoor(Nd);
       result = source;
-      int pc = processor_coor[dim];
       for(int p=0;p<processors[dim];p++) {
         PARALLEL_REGION
         {
@@ -241,8 +240,7 @@ namespace Grid {
           for(int idx=0;idx<sgrid->lSites();idx++) {
             sgrid->LocalIndexToLocalCoor(idx,cbuf);
             peekLocalSite(s,result,cbuf);
-	    cbuf[dim]+=((pc+p) % processors[dim])*L;
+            cbuf[dim]+=p*L;
-	    //            cbuf[dim]+=p*L;
             pokeLocalSite(s,pgbuf,cbuf);
           }
         }
@@ -280,6 +278,7 @@ namespace Grid {
       flops+= flops_call*NN;
       
       // writing out result
+      int pc = processor_coor[dim];
       PARALLEL_REGION
       {
         std::vector<int> clbuf(Nd), cgbuf(Nd);

lib/Grid.h

@@ -38,12 +38,52 @@ Author: paboyle <paboyle@ph.ed.ac.uk>
 #ifndef GRID_H
 #define GRID_H
 
-#include <Grid/GridCore.h>
+///////////////////
-#include <Grid/GridQCDcore.h>
+// Std C++ dependencies
-#include <Grid/qcd/action/Action.h>
+///////////////////
-#include <Grid/qcd/utils/GaugeFix.h>
+#include <cassert>
-#include <Grid/qcd/smearing/Smearing.h>
+#include <complex>
-#include <Grid/parallelIO/MetaData.h>
+#include <vector>
-#include <Grid/qcd/hmc/HMC_aggregate.h>
+#include <iostream>
+#include <iomanip>
+#include <random>
+#include <functional>
+#include <stdio.h>
+#include <stdlib.h>
+#include <stdio.h>
+#include <signal.h>
+#include <ctime>
+#include <sys/time.h>
+#include <chrono>
+
+///////////////////
+// Grid headers
+///////////////////
+#include "Config.h"
+#include <Grid/Timer.h>
+#include <Grid/PerfCount.h>
+#include <Grid/Log.h>
+#include <Grid/AlignedAllocator.h>
+#include <Grid/Simd.h>
+#include <Grid/serialisation/Serialisation.h>
+#include <Grid/Threads.h>
+#include <Grid/Lexicographic.h>
+#include <Grid/Init.h>
+#include <Grid/Communicator.h> 
+#include <Grid/Cartesian.h>    
+#include <Grid/Tensors.h>      
+#include <Grid/Lattice.h>      
+#include <Grid/Cshift.h>       
+#include <Grid/Stencil.h>      
+#include <Grid/Algorithms.h>   
+#include <Grid/parallelIO/BinaryIO.h>
+#include <Grid/FFT.h>
+
+#include <Grid/qcd/QCD.h>
+#include <Grid/parallelIO/NerscIO.h>
+#include <Grid/qcd/hmc/NerscCheckpointer.h>
+#include <Grid/qcd/hmc/HmcRunner.h>
+
+
 
 #endif

lib/GridStd.h

@@ -1,29 +0,0 @@
-#ifndef GRID_STD_H
-#define GRID_STD_H
-
-///////////////////
-// Std C++ dependencies
-///////////////////
-#include <cassert>
-#include <complex>
-#include <vector>
-#include <string>
-#include <iostream>
-#include <iomanip>
-#include <random>
-#include <functional>
-#include <stdio.h>
-#include <stdlib.h>
-#include <stdio.h>
-#include <signal.h>
-#include <ctime>
-#include <sys/time.h>
-#include <chrono>
-#include <zlib.h>
-
-///////////////////
-// Grid config
-///////////////////
-#include "Config.h"
-
-#endif /* GRID_STD_H */

lib/Grid_Eigen_Dense.h

@@ -1,9 +0,0 @@
-#pragma once
-#if defined __GNUC__
-#pragma GCC diagnostic push
-#pragma GCC diagnostic ignored "-Wdeprecated-declarations"
-#endif
-#include <Grid/Eigen/Dense>
-#if defined __GNUC__
-#pragma GCC diagnostic pop
-#endif

lib/Init.cc

@@ -1,6 +1,6 @@
-/*************************************************************************************
+    /*************************************************************************************
 
-    Grid physics library, www.github.com/paboyle/Grid
+    Grid physics library, www.github.com/paboyle/Grid 
 
     Source file: ./lib/Init.cc
 
@@ -36,20 +36,17 @@ Author: paboyle <paboyle@ph.ed.ac.uk>
 #include <stdint.h>
 #include <unistd.h>
 #include <sys/mman.h>
-#include <sys/stat.h>
+#include <sys/stat.h> 
 #include <sys/time.h>
 #include <signal.h>
 #include <iostream>
 #include <iterator>
+#include <Grid/Grid.h>
 #include <algorithm>
 #include <iterator>
 #include <cstdlib>
 #include <memory>
 
-#include <Grid/Grid.h>
-
-#include <Grid/util/CompilerCompatible.h>
-
 
 #include <fenv.h>
 #ifdef __APPLE__
@@ -95,14 +92,14 @@ const std::vector<int> GridDefaultSimd(int dims,int nsimd)
       if ( nn>=2) {
 	layout[d]=2;
 	nn/=2;
-      } else {
+      } else { 
 	layout[d]=1;
       }
     }
     assert(nn==1);
     return layout;
 }
-
+  
 ////////////////////////////////////////////////////////////
 // Command line parsing assist for stock controls
 ////////////////////////////////////////////////////////////
@@ -146,7 +143,7 @@ void GridCmdOptionIntVector(std::string &str,std::vector<int> & vec)
     vec.push_back(i);
     if(std::ispunct(ss.peek()))
       ss.ignore();
-  }
+  }    
   return;
 }
 
@@ -219,68 +216,11 @@ void Grid_init(int *argc,char ***argv)
     int MB;
     arg= GridCmdOptionPayload(*argv,*argv+*argc,"--shm");
     GridCmdOptionInt(arg,MB);
-    uint64_t MB64 = MB;
+    CartesianCommunicator::MAX_MPI_SHM_BYTES = MB*1024*1024;
-    CartesianCommunicator::MAX_MPI_SHM_BYTES = MB64*1024LL*1024LL;
-  }
-
-  if( GridCmdOptionExists(*argv,*argv+*argc,"--shm-hugepages") ){
-    CartesianCommunicator::Hugepages = 1;
-  }
-
-
-  if( GridCmdOptionExists(*argv,*argv+*argc,"--debug-signals") ){
-    Grid_debug_handler_init();
   }
 
   CartesianCommunicator::Init(argc,argv);
 
-  if( !GridCmdOptionExists(*argv,*argv+*argc,"--debug-stdout") ){
-    Grid_quiesce_nodes();
-  } else { 
-    FILE *fp;
-    std::ostringstream fname;
-    fname<<"Grid.stdout.";
-    fname<<CartesianCommunicator::RankWorld();
-    fp=freopen(fname.str().c_str(),"w",stdout);
-    assert(fp!=(FILE *)NULL);
-  }
-
-  ////////////////////////////////////
-  // Banner
-  ////////////////////////////////////
-  if ( CartesianCommunicator::RankWorld() == 0 ) { 
-    std::cout <<std::endl;
-    std::cout  << "__|__|__|__|__|__|__|__|__|__|__|__|__|__|__"<<std::endl; 
-    std::cout  << "__|__|__|__|__|__|__|__|__|__|__|__|__|__|__"<<std::endl; 
-    std::cout  << "__|_ |  |  |  |  |  |  |  |  |  |  |  | _|__"<<std::endl; 
-    std::cout  << "__|_                                    _|__"<<std::endl; 
-    std::cout  << "__|_   GGGG    RRRR    III    DDDD      _|__"<<std::endl;
-    std::cout  << "__|_  G        R   R    I     D   D     _|__"<<std::endl;
-    std::cout  << "__|_  G        R   R    I     D    D    _|__"<<std::endl;
-    std::cout  << "__|_  G  GG    RRRR     I     D    D    _|__"<<std::endl;
-    std::cout  << "__|_  G   G    R  R     I     D   D     _|__"<<std::endl;
-    std::cout  << "__|_   GGGG    R   R   III    DDDD      _|__"<<std::endl;
-    std::cout  << "__|_                                    _|__"<<std::endl; 
-    std::cout  << "__|__|__|__|__|__|__|__|__|__|__|__|__|__|__"<<std::endl; 
-    std::cout  << "__|__|__|__|__|__|__|__|__|__|__|__|__|__|__"<<std::endl; 
-    std::cout  << "  |  |  |  |  |  |  |  |  |  |  |  |  |  |  "<<std::endl; 
-    std::cout << std::endl;
-    std::cout << std::endl;
-    std::cout << "Copyright (C) 2015 Peter Boyle, Azusa Yamaguchi, Guido Cossu, Antonin Portelli and other authors"<<std::endl;
-    std::cout << std::endl;
-    std::cout << "This program is free software; you can redistribute it and/or modify"<<std::endl;
-    std::cout << "it under the terms of the GNU General Public License as published by"<<std::endl;
-    std::cout << "the Free Software Foundation; either version 2 of the License, or"<<std::endl;
-    std::cout << "(at your option) any later version."<<std::endl;
-    std::cout << std::endl;
-    std::cout << "This program is distributed in the hope that it will be useful,"<<std::endl;
-    std::cout << "but WITHOUT ANY WARRANTY; without even the implied warranty of"<<std::endl;
-    std::cout << "MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the"<<std::endl;
-    std::cout << "GNU General Public License for more details."<<std::endl;
-    std::cout << std::endl;
-  }
-
-
   ////////////////////////////////////
   // Logging
   ////////////////////////////////////
@@ -290,6 +230,9 @@ void Grid_init(int *argc,char ***argv)
   GridCmdOptionCSL(defaultLog,logstreams);
   GridLogConfigure(logstreams);
 
+  if( !GridCmdOptionExists(*argv,*argv+*argc,"--debug-stdout") ){
+    Grid_quiesce_nodes();
+  }
 
   if( GridCmdOptionExists(*argv,*argv+*argc,"--log") ){
     arg = GridCmdOptionPayload(*argv,*argv+*argc,"--log");
@@ -305,80 +248,101 @@ void Grid_init(int *argc,char ***argv)
     std::cout<<GridLogMessage<<"  --help : this message"<<std::endl;
     std::cout<<GridLogMessage<<std::endl;
     std::cout<<GridLogMessage<<"Geometry:"<<std::endl;
-    std::cout<<GridLogMessage<<std::endl;
     std::cout<<GridLogMessage<<"  --mpi n.n.n.n   : default MPI decomposition"<<std::endl;    
     std::cout<<GridLogMessage<<"  --threads n     : default number of OMP threads"<<std::endl;
-    std::cout<<GridLogMessage<<"  --grid n.n.n.n  : default Grid size"<<std::endl;
+    std::cout<<GridLogMessage<<"  --grid n.n.n.n  : default Grid size"<<std::endl;    
-    std::cout<<GridLogMessage<<"  --shm  M        : allocate M megabytes of shared memory for comms"<<std::endl;
+    std::cout<<GridLogMessage<<"  --shm  M        : allocate M megabytes of shared memory for comms"<<std::endl;    
-    std::cout<<GridLogMessage<<"  --shm-hugepages : use explicit huge pages in mmap call "<<std::endl;    
     std::cout<<GridLogMessage<<std::endl;
     std::cout<<GridLogMessage<<"Verbose and debug:"<<std::endl;
-    std::cout<<GridLogMessage<<std::endl;
+    std::cout<<GridLogMessage<<"  --log list      : comma separted list of streams from Error,Warning,Message,Performance,Iterative,Integrator,Debug,Colours"<<std::endl;
-    std::cout<<GridLogMessage<<"  --log list      : comma separated list from Error,Warning,Message,Performance,Iterative,Integrator,Debug,Colours"<<std::endl;
     std::cout<<GridLogMessage<<"  --decomposition : report on default omp,mpi and simd decomposition"<<std::endl;    
     std::cout<<GridLogMessage<<"  --debug-signals : catch sigsegv and print a blame report"<<std::endl;
-    std::cout<<GridLogMessage<<"  --debug-stdout  : print stdout from EVERY node"<<std::endl;
+    std::cout<<GridLogMessage<<"  --debug-stdout  : print stdout from EVERY node"<<std::endl;    
-    std::cout<<GridLogMessage<<"  --notimestamp   : suppress millisecond resolution stamps"<<std::endl;
+    std::cout<<GridLogMessage<<"  --notimestamp   : suppress millisecond resolution stamps"<<std::endl;    
     std::cout<<GridLogMessage<<std::endl;
     std::cout<<GridLogMessage<<"Performance:"<<std::endl;
-    std::cout<<GridLogMessage<<std::endl;
-    std::cout<<GridLogMessage<<"  --comms-concurrent : Asynchronous MPI calls; several dirs at a time "<<std::endl;    
-    std::cout<<GridLogMessage<<"  --comms-sequential : Synchronous MPI calls; one dirs at a time "<<std::endl;    
-    std::cout<<GridLogMessage<<"  --comms-overlap    : Overlap comms with compute "<<std::endl;    
-    std::cout<<GridLogMessage<<std::endl;
     std::cout<<GridLogMessage<<"  --dslash-generic: Wilson kernel for generic Nc"<<std::endl;    
     std::cout<<GridLogMessage<<"  --dslash-unroll : Wilson kernel for Nc=3"<<std::endl;    
     std::cout<<GridLogMessage<<"  --dslash-asm    : Wilson kernel for AVX512"<<std::endl;    
-    std::cout<<GridLogMessage<<std::endl;
     std::cout<<GridLogMessage<<"  --lebesgue      : Cache oblivious Lebesgue curve/Morton order/Z-graph stencil looping"<<std::endl;    
     std::cout<<GridLogMessage<<"  --cacheblocking n.m.o.p : Hypercuboidal cache blocking"<<std::endl;    
     std::cout<<GridLogMessage<<std::endl;
     exit(EXIT_SUCCESS);
   }
 
+  ////////////////////////////////////
+  // Banner
+  ////////////////////////////////////
+
+  std::string COL_RED    = GridLogColours.colour["RED"];
+  std::string COL_PURPLE = GridLogColours.colour["PURPLE"];
+  std::string COL_BLACK  = GridLogColours.colour["BLACK"];
+  std::string COL_GREEN  = GridLogColours.colour["GREEN"];
+  std::string COL_BLUE   = GridLogColours.colour["BLUE"];
+  std::string COL_YELLOW = GridLogColours.colour["YELLOW"];
+  std::string COL_BACKGROUND = GridLogColours.colour["NORMAL"];
+  
+  std::cout <<std::endl;
+  std::cout <<COL_RED  << "__|__|__|__|__"<<             "|__|__|_"<<COL_PURPLE<<"_|__|__|"<<                "__|__|__|__|__"<<std::endl; 
+  std::cout <<COL_RED  << "__|__|__|__|__"<<             "|__|__|_"<<COL_PURPLE<<"_|__|__|"<<                "__|__|__|__|__"<<std::endl; 
+  std::cout <<COL_RED  << "__|_ |  |  |  "<<             "|  |  | "<<COL_PURPLE<<" |  |  |"<<                "  |  |  | _|__"<<std::endl; 
+  std::cout <<COL_RED  << "__|_          "<<             "        "<<COL_PURPLE<<"        "<<                "          _|__"<<std::endl; 
+  std::cout <<COL_RED  << "__|_  "<<COL_GREEN<<" GGGG   "<<COL_RED<<" RRRR   "<<COL_BLUE  <<" III    "<<COL_PURPLE<<"DDDD  "<<COL_PURPLE<<"    _|__"<<std::endl;
+  std::cout <<COL_RED  << "__|_  "<<COL_GREEN<<"G       "<<COL_RED<<" R   R  "<<COL_BLUE  <<"  I     "<<COL_PURPLE<<"D   D "<<COL_PURPLE<<"    _|__"<<std::endl;
+  std::cout <<COL_RED  << "__|_  "<<COL_GREEN<<"G       "<<COL_RED<<" R   R  "<<COL_BLUE  <<"  I     "<<COL_PURPLE<<"D    D"<<COL_PURPLE<<"    _|__"<<std::endl;
+  std::cout <<COL_BLUE << "__|_  "<<COL_GREEN<<"G  GG   "<<COL_RED<<" RRRR   "<<COL_BLUE  <<"  I     "<<COL_PURPLE<<"D    D"<<COL_GREEN <<"    _|__"<<std::endl;
+  std::cout <<COL_BLUE << "__|_  "<<COL_GREEN<<"G   G   "<<COL_RED<<" R  R   "<<COL_BLUE  <<"  I     "<<COL_PURPLE<<"D   D "<<COL_GREEN <<"    _|__"<<std::endl;
+  std::cout <<COL_BLUE << "__|_  "<<COL_GREEN<<" GGGG   "<<COL_RED<<" R   R  "<<COL_BLUE  <<" III    "<<COL_PURPLE<<"DDDD  "<<COL_GREEN <<"    _|__"<<std::endl;
+  std::cout <<COL_BLUE << "__|_          "<<             "        "<<COL_GREEN <<"        "<<                "          _|__"<<std::endl; 
+  std::cout <<COL_BLUE << "__|__|__|__|__"<<             "|__|__|_"<<COL_GREEN <<"_|__|__|"<<                "__|__|__|__|__"<<std::endl; 
+  std::cout <<COL_BLUE << "__|__|__|__|__"<<             "|__|__|_"<<COL_GREEN <<"_|__|__|"<<                "__|__|__|__|__"<<std::endl; 
+  std::cout <<COL_BLUE << "  |  |  |  |  "<<             "|  |  | "<<COL_GREEN <<" |  |  |"<<                "  |  |  |  |  "<<std::endl; 
+  std::cout << std::endl;
+  std::cout << std::endl;
+  std::cout <<COL_YELLOW<< std::endl;
+  std::cout << "Copyright (C) 2015 Peter Boyle, Azusa Yamaguchi, Guido Cossu, Antonin Portelli and other authors"<<std::endl;
+  std::cout << std::endl;
+  std::cout << "This program is free software; you can redistribute it and/or modify"<<std::endl;
+  std::cout << "it under the terms of the GNU General Public License as published by"<<std::endl;
+  std::cout << "the Free Software Foundation; either version 2 of the License, or"<<std::endl;
+  std::cout << "(at your option) any later version."<<std::endl;
+  std::cout << std::endl;
+  std::cout << "This program is distributed in the hope that it will be useful,"<<std::endl;
+  std::cout << "but WITHOUT ANY WARRANTY; without even the implied warranty of"<<std::endl;
+  std::cout << "MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the"<<std::endl;
+  std::cout << "GNU General Public License for more details."<<std::endl;
+  std::cout << COL_BACKGROUND <<std::endl;
+  std::cout << std::endl;
+
   ////////////////////////////////////
   // Debug and performance options
   ////////////////////////////////////
 
+
+  if( GridCmdOptionExists(*argv,*argv+*argc,"--debug-signals") ){
+    Grid_debug_handler_init();
+  }
   if( GridCmdOptionExists(*argv,*argv+*argc,"--dslash-unroll") ){
     QCD::WilsonKernelsStatic::Opt=QCD::WilsonKernelsStatic::OptHandUnroll;
-    QCD::StaggeredKernelsStatic::Opt=QCD::StaggeredKernelsStatic::OptHandUnroll;
   }
   if( GridCmdOptionExists(*argv,*argv+*argc,"--dslash-asm") ){
     QCD::WilsonKernelsStatic::Opt=QCD::WilsonKernelsStatic::OptInlineAsm;
-    QCD::StaggeredKernelsStatic::Opt=QCD::StaggeredKernelsStatic::OptInlineAsm;
   }
   if( GridCmdOptionExists(*argv,*argv+*argc,"--dslash-generic") ){
     QCD::WilsonKernelsStatic::Opt=QCD::WilsonKernelsStatic::OptGeneric;
-    QCD::StaggeredKernelsStatic::Opt=QCD::StaggeredKernelsStatic::OptGeneric;
   }
-  if( GridCmdOptionExists(*argv,*argv+*argc,"--comms-overlap") ){
-    QCD::WilsonKernelsStatic::Comms = QCD::WilsonKernelsStatic::CommsAndCompute;
-  } else {
-    QCD::WilsonKernelsStatic::Comms = QCD::WilsonKernelsStatic::CommsThenCompute;
-  }
-  if( GridCmdOptionExists(*argv,*argv+*argc,"--comms-concurrent") ){
-    CartesianCommunicator::SetCommunicatorPolicy(CartesianCommunicator::CommunicatorPolicyConcurrent);
-  }
-  if( GridCmdOptionExists(*argv,*argv+*argc,"--comms-sequential") ){
-    CartesianCommunicator::SetCommunicatorPolicy(CartesianCommunicator::CommunicatorPolicySequential);
-  }
-
   if( GridCmdOptionExists(*argv,*argv+*argc,"--lebesgue") ){
     LebesgueOrder::UseLebesgueOrder=1;
   }
-  CartesianCommunicator::nCommThreads = -1;
+
-  if( GridCmdOptionExists(*argv,*argv+*argc,"--comms-threads") ){
+
-    arg= GridCmdOptionPayload(*argv,*argv+*argc,"--comms-threads");
-    GridCmdOptionInt(arg,CartesianCommunicator::nCommThreads);
-  }
   if( GridCmdOptionExists(*argv,*argv+*argc,"--cacheblocking") ){
     arg= GridCmdOptionPayload(*argv,*argv+*argc,"--cacheblocking");
     GridCmdOptionIntVector(arg,LebesgueOrder::Block);
   }
   if( GridCmdOptionExists(*argv,*argv+*argc,"--notimestamp") ){
     GridLogTimestamp(0);
-  } else {
+  } else { 
     GridLogTimestamp(1);
   }
 
@@ -387,12 +351,9 @@ void Grid_init(int *argc,char ***argv)
 		  Grid_default_mpi);
 
   std::cout << GridLogMessage << "Requesting "<< CartesianCommunicator::MAX_MPI_SHM_BYTES <<" byte stencil comms buffers "<<std::endl;
-  if ( CartesianCommunicator::Hugepages) {
-    std::cout << GridLogMessage << "Mapped stencil comms buffers as MAP_HUGETLB "<<std::endl;
-  }
 
   if( GridCmdOptionExists(*argv,*argv+*argc,"--decomposition") ){
-    std::cout<<GridLogMessage<<"Grid Default Decomposition patterns\n";
+    std::cout<<GridLogMessage<<"Grid Decomposition\n";
     std::cout<<GridLogMessage<<"\tOpenMP threads : "<<GridThread::GetThreads()<<std::endl;
     std::cout<<GridLogMessage<<"\tMPI tasks      : "<<GridCmdVectorIntToString(GridDefaultMpi())<<std::endl;
     std::cout<<GridLogMessage<<"\tvRealF         : "<<sizeof(vRealF)*8    <<"bits ; " <<GridCmdVectorIntToString(GridDefaultSimd(4,vRealF::Nsimd()))<<std::endl;
@@ -405,39 +366,30 @@ void Grid_init(int *argc,char ***argv)
   Grid_is_initialised = 1;
 }
 
-
+  
 void Grid_finalize(void)
 {
-#if defined (GRID_COMMS_MPI) || defined (GRID_COMMS_MPI3) || defined (GRID_COMMS_MPIT)
+#if defined (GRID_COMMS_MPI) || defined (GRID_COMMS_MPI3) 
   MPI_Finalize();
   Grid_unquiesce_nodes();
 #endif
-#if defined (GRID_COMMS_SHMEM)
-  shmem_finalize();
-#endif
-}
-
-void GridLogLayout() {
-    std::cout << GridLogMessage << "Grid Layout\n";
-    std::cout << GridLogMessage << "\tGlobal lattice size  : "<< GridCmdVectorIntToString(GridDefaultLatt()) << std::endl;
-    std::cout << GridLogMessage << "\tOpenMP threads       : "<< GridThread::GetThreads() <<std::endl;
-    std::cout << GridLogMessage << "\tMPI tasks            : "<< GridCmdVectorIntToString(GridDefaultMpi()) << std::endl;
 }
 
 void * Grid_backtrace_buffer[_NBACKTRACE];
 
 void Grid_sa_signal_handler(int sig,siginfo_t *si,void * ptr)
 {
-  fprintf(stderr,"Caught signal %d\n",si->si_signo);
+  printf("Caught signal %d\n",si->si_signo);
-  fprintf(stderr,"  mem address %llx\n",(unsigned long long)si->si_addr);
+  printf("  mem address %llx\n",(unsigned long long)si->si_addr);
-  fprintf(stderr,"         code %d\n",si->si_code);
+  printf("         code %d\n",si->si_code);
+
   // Linux/Posix
 #ifdef __linux__
   // And x86 64bit
 #ifdef __x86_64__
   ucontext_t * uc= (ucontext_t *)ptr;
   struct sigcontext *sc = (struct sigcontext *)&uc->uc_mcontext;
-  fprintf(stderr,"  instruction %llx\n",(unsigned long long)sc->rip);
+  printf("  instruction %llx\n",(unsigned long long)sc->rip);
 #define REG(A)  printf("  %s %lx\n",#A,sc-> A);
   REG(rdi);
   REG(rsi);
@@ -460,11 +412,7 @@ void Grid_sa_signal_handler(int sig,siginfo_t *si,void * ptr)
   REG(r15);
 #endif
 #endif
-  fflush(stderr);
+  BACKTRACE();
-  BACKTRACEFP(stderr);
-  fprintf(stderr,"Called backtrace\n");
-  fflush(stdout);
-  fflush(stderr);
   exit(0);
   return;
 };
@@ -477,12 +425,9 @@ void Grid_debug_handler_init(void)
   sa.sa_flags    = SA_SIGINFO;
   sigaction(SIGSEGV,&sa,NULL);
   sigaction(SIGTRAP,&sa,NULL);
-  sigaction(SIGBUS,&sa,NULL);
 
   feenableexcept( FE_INVALID|FE_OVERFLOW|FE_DIVBYZERO);
 
   sigaction(SIGFPE,&sa,NULL);
-  sigaction(SIGKILL,&sa,NULL);
-  sigaction(SIGILL,&sa,NULL);
 }
 }

lib/Init.h

@@ -1,6 +1,6 @@
     /*************************************************************************************
 
-    Grid physics library, www.github.com/paboyle/Grid
+    Grid physics library, www.github.com/paboyle/Grid 
 
     Source file: ./lib/Init.h
 
@@ -46,7 +46,6 @@ namespace Grid {
   const int              &GridThreads(void)  ;
   void                    GridSetThreads(int t) ;
   void GridLogTimestamp(int);
-  void GridLogLayout();
 
   // Common parsing chores
   std::string GridCmdOptionPayload(char ** begin, char ** end, const std::string & option);

lib/Lexicographic.h

@@ -7,7 +7,7 @@ namespace Grid{
   class Lexicographic {
   public:
 
-    static inline void CoorFromIndex (std::vector<int>& coor,int index,const std::vector<int> &dims){
+    static inline void CoorFromIndex (std::vector<int>& coor,int index,std::vector<int> &dims){
       int nd= dims.size();
       coor.resize(nd);
       for(int d=0;d<nd;d++){
@@ -16,7 +16,7 @@ namespace Grid{
       }
     }
 
-    static inline void IndexFromCoor (const std::vector<int>& coor,int &index,const std::vector<int> &dims){
+    static inline void IndexFromCoor (std::vector<int>& coor,int &index,std::vector<int> &dims){
       int nd=dims.size();
       int stride=1;
       index=0;

lib/Log.cc

@@ -29,11 +29,9 @@ See the full license in the file "LICENSE" in the top level distribution
 directory
 *************************************************************************************/
 /*  END LEGAL */
-#include <Grid/GridCore.h>
+#include <Grid/Grid.h>
-#include <Grid/util/CompilerCompatible.h>
 
 #include <cxxabi.h>
-#include <memory>
 
 namespace Grid {
 
@@ -95,7 +93,7 @@ void GridLogConfigure(std::vector<std::string> &logstreams) {
 ////////////////////////////////////////////////////////////
 void Grid_quiesce_nodes(void) {
   int me = 0;
-#if defined(GRID_COMMS_MPI) || defined(GRID_COMMS_MPI3) || defined(GRID_COMMS_MPIT)
+#if defined(GRID_COMMS_MPI) || defined(GRID_COMMS_MPI3) || defined(GRID_COMMS_MPI3L)
   MPI_Comm_rank(MPI_COMM_WORLD, &me);
 #endif
 #ifdef GRID_COMMS_SHMEM

lib/Log.h

@@ -110,8 +110,8 @@ public:
   friend std::ostream& operator<< (std::ostream& stream, Logger& log){
 
     if ( log.active ) {
-      stream << log.background()<< std::setw(8) << std::left << log.topName << log.background()<< " : ";
+      stream << log.background()<< std::setw(10) << std::left << log.topName << log.background()<< " : ";
-      stream << log.colour() << std::setw(10) << std::left << log.name << log.background() << " : ";
+      stream << log.colour() << std::setw(14) << std::left << log.name << log.background() << " : ";
       if ( log.timestamp ) {
 	StopWatch.Stop();
 	GridTime now = StopWatch.Elapsed();

lib/Makefile.am

@@ -10,8 +10,8 @@ if BUILD_COMMS_MPI3
   extra_sources+=communicator/Communicator_base.cc
 endif
 
-if BUILD_COMMS_MPIT
+if BUILD_COMMS_MPI3L
-  extra_sources+=communicator/Communicator_mpit.cc
+  extra_sources+=communicator/Communicator_mpi3_leader.cc
   extra_sources+=communicator/Communicator_base.cc
 endif
 

lib/Old/Tensor_peek.h

@@ -0,0 +1,154 @@
+    /*************************************************************************************
+
+    Grid physics library, www.github.com/paboyle/Grid 
+
+    Source file: ./lib/Old/Tensor_peek.h
+
+    Copyright (C) 2015
+
+Author: Peter Boyle <paboyle@ph.ed.ac.uk>
+
+    This program is free software; you can redistribute it and/or modify
+    it under the terms of the GNU General Public License as published by
+    the Free Software Foundation; either version 2 of the License, or
+    (at your option) any later version.
+
+    This program is distributed in the hope that it will be useful,
+    but WITHOUT ANY WARRANTY; without even the implied warranty of
+    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+    GNU General Public License for more details.
+
+    You should have received a copy of the GNU General Public License along
+    with this program; if not, write to the Free Software Foundation, Inc.,
+    51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
+
+    See the full license in the file "LICENSE" in the top level distribution directory
+    *************************************************************************************/
+    /*  END LEGAL */
+#ifndef GRID_MATH_PEEK_H
+#define GRID_MATH_PEEK_H
+namespace Grid {
+
+//////////////////////////////////////////////////////////////////////////////
+// Peek on a specific index; returns a scalar in that index, tensor inherits rest
+//////////////////////////////////////////////////////////////////////////////
+// If we hit the right index, return scalar with no further recursion
+
+//template<int Level> inline ComplexF peekIndex(const ComplexF arg) { return arg;}
+//template<int Level> inline ComplexD peekIndex(const ComplexD arg) { return arg;}
+//template<int Level> inline RealF peekIndex(const RealF arg) { return arg;}
+//template<int Level> inline RealD peekIndex(const RealD arg) { return arg;}
+#if 0
+// Scalar peek, no indices
+template<int Level,class vtype,typename std::enable_if< iScalar<vtype>::TensorLevel == Level >::type * =nullptr> inline 
+  auto peekIndex(const iScalar<vtype> &arg) ->  iScalar<vtype> 
+{
+  return arg;
+}
+// Vector peek, one index
+template<int Level,class vtype,int N,typename std::enable_if< iScalar<vtype>::TensorLevel == Level >::type * =nullptr> inline 
+  auto peekIndex(const iVector<vtype,N> &arg,int i) -> iScalar<vtype> // Index matches
+{
+  iScalar<vtype> ret;                              // return scalar
+  ret._internal = arg._internal[i];
+  return ret;
+}
+// Matrix peek, two indices
+template<int Level,class vtype,int N,typename std::enable_if< iScalar<vtype>::TensorLevel == Level >::type * =nullptr> inline 
+  auto peekIndex(const iMatrix<vtype,N> &arg,int i,int j) ->  iScalar<vtype>
+{
+  iScalar<vtype> ret;                              // return scalar
+  ret._internal = arg._internal[i][j];
+  return ret;
+}
+
+/////////////
+// No match peek for scalar,vector,matrix must forward on either 0,1,2 args. Must have 9 routines with notvalue
+/////////////
+// scalar
+template<int Level,class vtype,typename std::enable_if< iScalar<vtype>::TensorLevel != Level >::type * =nullptr> inline 
+  auto peekIndex(const iScalar<vtype> &arg) -> iScalar<decltype(peekIndex<Level>(arg._internal))>
+{
+  iScalar<decltype(peekIndex<Level>(arg._internal))> ret;
+  ret._internal= peekIndex<Level>(arg._internal);
+  return ret;
+}
+template<int Level,class vtype, typename std::enable_if< iScalar<vtype>::TensorLevel != Level >::type * =nullptr> inline 
+  auto peekIndex(const iScalar<vtype> &arg,int i) ->  iScalar<decltype(peekIndex<Level>(arg._internal,i))> 
+{
+  iScalar<decltype(peekIndex<Level>(arg._internal,i))> ret;
+  ret._internal=peekIndex<Level>(arg._internal,i);
+  return ret;
+}
+template<int Level,class vtype, typename std::enable_if< iScalar<vtype>::TensorLevel != Level >::type * =nullptr> inline 
+  auto peekIndex(const iScalar<vtype> &arg,int i,int j) ->  iScalar<decltype(peekIndex<Level>(arg._internal,i,j))>
+{
+  iScalar<decltype(peekIndex<Level>(arg._internal,i,j))> ret;
+  ret._internal=peekIndex<Level>(arg._internal,i,j);
+  return ret;
+}
+// vector
+template<int Level,class vtype,int N, typename std::enable_if< iScalar<vtype>::TensorLevel != Level >::type * =nullptr> inline 
+auto peekIndex(const iVector<vtype,N> &arg) ->   iVector<decltype(peekIndex<Level>(arg._internal[0])),N>
+{
+  iVector<decltype(peekIndex<Level>(arg._internal[0])),N> ret;
+  for(int ii=0;ii<N;ii++){
+    ret._internal[ii]=peekIndex<Level>(arg._internal[ii]);
+  }
+  return ret;
+}
+template<int Level,class vtype,int N, typename std::enable_if< iScalar<vtype>::TensorLevel != Level >::type * =nullptr> inline 
+  auto peekIndex(const iVector<vtype,N> &arg,int i) ->  iVector<decltype(peekIndex<Level>(arg._internal[0],i)),N>
+{
+  iVector<decltype(peekIndex<Level>(arg._internal[0],i)),N> ret;
+  for(int ii=0;ii<N;ii++){
+    ret._internal[ii]=peekIndex<Level>(arg._internal[ii],i);
+  }
+  return ret;
+}
+template<int Level,class vtype,int N, typename std::enable_if< iScalar<vtype>::TensorLevel != Level >::type * =nullptr> inline 
+  auto peekIndex(const iVector<vtype,N> &arg,int i,int j) ->  iVector<decltype(peekIndex<Level>(arg._internal[0],i,j)),N> 
+{
+  iVector<decltype(peekIndex<Level>(arg._internal[0],i,j)),N> ret;
+  for(int ii=0;ii<N;ii++){
+    ret._internal[ii]=peekIndex<Level>(arg._internal[ii],i,j);
+  }
+  return ret;
+}
+
+// matrix
+template<int Level,class vtype,int N, typename std::enable_if< iScalar<vtype>::TensorLevel != Level >::type * =nullptr> inline 
+auto peekIndex(const iMatrix<vtype,N> &arg) ->   iMatrix<decltype(peekIndex<Level>(arg._internal[0][0])),N> 
+{
+  iMatrix<decltype(peekIndex<Level>(arg._internal[0][0])),N> ret;
+  for(int ii=0;ii<N;ii++){
+  for(int jj=0;jj<N;jj++){
+    ret._internal[ii][jj]=peekIndex<Level>(arg._internal[ii][jj]);// Could avoid this because peeking a scalar is dumb
+  }}
+  return ret;
+}
+template<int Level,class vtype,int N, typename std::enable_if< iScalar<vtype>::TensorLevel != Level >::type * =nullptr> inline 
+  auto peekIndex(const iMatrix<vtype,N> &arg,int i) ->   iMatrix<decltype(peekIndex<Level>(arg._internal[0][0],i)),N>
+{
+  iMatrix<decltype(peekIndex<Level>(arg._internal[0][0],i)),N> ret;
+  for(int ii=0;ii<N;ii++){
+  for(int jj=0;jj<N;jj++){
+    ret._internal[ii][jj]=peekIndex<Level>(arg._internal[ii][jj],i);
+  }}
+  return ret;
+}
+template<int Level,class vtype,int N, typename std::enable_if< iScalar<vtype>::TensorLevel != Level >::type * =nullptr> inline 
+  auto peekIndex(const iMatrix<vtype,N> &arg,int i,int j) ->   iMatrix<decltype(peekIndex<Level>(arg._internal[0][0],i,j)),N>
+{
+  iMatrix<decltype(peekIndex<Level>(arg._internal[0][0],i,j)),N> ret;
+  for(int ii=0;ii<N;ii++){
+  for(int jj=0;jj<N;jj++){
+    ret._internal[ii][jj]=peekIndex<Level>(arg._internal[ii][jj],i,j);
+  }}
+  return ret;
+}
+#endif
+
+
+}
+#endif

lib/Old/Tensor_poke.h

@@ -0,0 +1,127 @@
+    /*************************************************************************************
+
+    Grid physics library, www.github.com/paboyle/Grid 
+
+    Source file: ./lib/Old/Tensor_poke.h
+
+    Copyright (C) 2015
+
+Author: Peter Boyle <paboyle@ph.ed.ac.uk>
+
+    This program is free software; you can redistribute it and/or modify
+    it under the terms of the GNU General Public License as published by
+    the Free Software Foundation; either version 2 of the License, or
+    (at your option) any later version.
+
+    This program is distributed in the hope that it will be useful,
+    but WITHOUT ANY WARRANTY; without even the implied warranty of
+    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+    GNU General Public License for more details.
+
+    You should have received a copy of the GNU General Public License along
+    with this program; if not, write to the Free Software Foundation, Inc.,
+    51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
+
+    See the full license in the file "LICENSE" in the top level distribution directory
+    *************************************************************************************/
+    /*  END LEGAL */
+#ifndef GRID_MATH_POKE_H
+#define GRID_MATH_POKE_H
+namespace Grid {
+
+//////////////////////////////////////////////////////////////////////////////
+// Poke a specific index; 
+//////////////////////////////////////////////////////////////////////////////
+#if 0
+// Scalar poke
+template<int Level,class vtype,typename std::enable_if< iScalar<vtype>::TensorLevel == Level >::type * =nullptr> inline 
+  void pokeIndex(iScalar<vtype> &ret, const iScalar<vtype> &arg)
+{
+  ret._internal = arg._internal;
+}
+// Vector poke, one index
+template<int Level,class vtype,int N,typename std::enable_if< iScalar<vtype>::TensorLevel == Level >::type * =nullptr> inline 
+  void pokeIndex(iVector<vtype,N> &ret, const iScalar<vtype> &arg,int i)
+{
+  ret._internal[i] = arg._internal;
+}
+//Matrix poke, two indices
+template<int Level,class vtype,int N,typename std::enable_if< iScalar<vtype>::TensorLevel == Level >::type * =nullptr> inline 
+  void pokeIndex(iMatrix<vtype,N> &ret, const iScalar<vtype> &arg,int i,int j)
+{
+  ret._internal[i][j] = arg._internal;
+}
+
+/////////////
+// No match poke for scalar,vector,matrix must forward on either 0,1,2 args. Must have 9 routines with notvalue
+/////////////
+// scalar
+template<int Level,class vtype,typename std::enable_if< iScalar<vtype>::TensorLevel != Level >::type * =nullptr> inline 
+void pokeIndex(iScalar<vtype> &ret, const iScalar<decltype(peekIndex<Level>(ret._internal))>  &arg)
+{
+  pokeIndex<Level>(ret._internal,arg._internal);
+}
+template<int Level,class vtype,typename std::enable_if< iScalar<vtype>::TensorLevel != Level >::type * =nullptr> inline 
+  void pokeIndex(iScalar<vtype> &ret, const iScalar<decltype(peekIndex<Level>(ret._internal,0))> &arg, int i)
+		 
+{
+  pokeIndex<Level>(ret._internal,arg._internal,i);
+}
+template<int Level,class vtype,typename std::enable_if< iScalar<vtype>::TensorLevel != Level >::type * =nullptr> inline 
+  void pokeIndex(iScalar<vtype> &ret, const iScalar<decltype(peekIndex<Level>(ret._internal,0,0))> &arg,int i,int j)
+{
+  pokeIndex<Level>(ret._internal,arg._internal,i,j);
+}
+
+// Vector
+template<int Level,class vtype,int N,typename std::enable_if< iScalar<vtype>::TensorLevel != Level >::type * =nullptr> inline 
+  void pokeIndex(iVector<vtype,N> &ret, iVector<decltype(peekIndex<Level>(ret._internal)),N>  &arg)
+{
+  for(int ii=0;ii<N;ii++){
+    pokeIndex<Level>(ret._internal[ii],arg._internal[ii]);
+  }
+}
+template<int Level,class vtype,int N,typename std::enable_if< iScalar<vtype>::TensorLevel != Level >::type * =nullptr> inline 
+  void pokeIndex(iVector<vtype,N> &ret, const iVector<decltype(peekIndex<Level>(ret._internal,0)),N> &arg,int i)
+{
+  for(int ii=0;ii<N;ii++){
+    pokeIndex<Level>(ret._internal[ii],arg._internal[ii],i);
+  }
+}
+template<int Level,class vtype,int N,typename std::enable_if< iScalar<vtype>::TensorLevel != Level >::type * =nullptr> inline 
+  void pokeIndex(iVector<vtype,N> &ret, const iVector<decltype(peekIndex<Level>(ret._internal,0,0)),N> &arg,int i,int j)
+{
+  for(int ii=0;ii<N;ii++){
+    pokeIndex<Level>(ret._internal[ii],arg._internal[ii],i,j);
+  }
+}
+
+// Matrix
+template<int Level,class vtype,int N,typename std::enable_if< iScalar<vtype>::TensorLevel != Level >::type * =nullptr> inline 
+  void pokeIndex(iMatrix<vtype,N> &ret, const iMatrix<decltype(peekIndex<Level>(ret._internal)),N> &arg)		 
+{
+  for(int ii=0;ii<N;ii++){
+  for(int jj=0;jj<N;jj++){
+    pokeIndex<Level>(ret._internal[ii][jj],arg._internal[ii][jj]);
+  }}
+}
+template<int Level,class vtype,int N,typename std::enable_if< iScalar<vtype>::TensorLevel != Level >::type * =nullptr> inline 
+  void pokeIndex(iMatrix<vtype,N> &ret, const iMatrix<decltype(peekIndex<Level>(ret._internal,0)),N> &arg,int i)
+{
+  for(int ii=0;ii<N;ii++){
+  for(int jj=0;jj<N;jj++){
+    pokeIndex<Level>(ret._internal[ii][jj],arg._internal[ii][jj],i);
+  }}
+}
+template<int Level,class vtype,int N,typename std::enable_if< iScalar<vtype>::TensorLevel != Level >::type * =nullptr> inline 
+  void pokeIndex(iMatrix<vtype,N> &ret, const iMatrix<decltype(peekIndex<Level>(ret._internal,0,0)),N> &arg, int i,int j)
+{
+  for(int ii=0;ii<N;ii++){
+  for(int jj=0;jj<N;jj++){
+    pokeIndex<Level>(ret._internal[ii][jj],arg._internal[ii][jj],i,j);
+  }}
+}
+#endif
+
+}
+#endif

lib/PerfCount.cc

@@ -26,8 +26,8 @@ Author: paboyle <paboyle@ph.ed.ac.uk>
     *************************************************************************************/
     /*  END LEGAL */
 
-#include <Grid/GridCore.h>
+#include <Grid/Grid.h>
-#include <Grid/perfmon/PerfCount.h>
+#include <Grid/PerfCount.h>
 
 namespace Grid {
 
@@ -40,7 +40,7 @@ const PerformanceCounter::PerformanceCounterConfig PerformanceCounter::Performan
   { PERF_TYPE_HARDWARE, PERF_COUNT_HW_CPU_CYCLES          ,  "CPUCYCLES.........." , INSTRUCTIONS},
   { PERF_TYPE_HARDWARE, PERF_COUNT_HW_INSTRUCTIONS        ,  "INSTRUCTIONS......." , CPUCYCLES   },
     // 4
-#ifdef KNL
+#ifdef AVX512
     { PERF_TYPE_RAW, RawConfig(0x40,0x04), "ALL_LOADS..........", CPUCYCLES    },
     { PERF_TYPE_RAW, RawConfig(0x01,0x04), "L1_MISS_LOADS......", L1D_READ_ACCESS  },
     { PERF_TYPE_RAW, RawConfig(0x40,0x04), "ALL_LOADS..........", L1D_READ_ACCESS    },

lib/PerfCount.h

@@ -172,7 +172,7 @@ public:
     const char * name = PerformanceCounterConfigs[PCT].name;
     fd = perf_event_open(&pe, 0, -1, -1, 0); // pid 0, cpu -1 current process any cpu. group -1
     if (fd == -1) {
-      fprintf(stderr, "Error opening leader %llx for event %s\n",(long long) pe.config,name);
+      fprintf(stderr, "Error opening leader %llx for event %s\n", pe.config,name);
       perror("Error is");
     }
     int norm = PerformanceCounterConfigs[PCT].normalisation;
@@ -181,7 +181,7 @@ public:
     name = PerformanceCounterConfigs[norm].name;
     cyclefd = perf_event_open(&pe, 0, -1, -1, 0); // pid 0, cpu -1 current process any cpu. group -1
     if (cyclefd == -1) {
-      fprintf(stderr, "Error opening leader %llx for event %s\n",(long long) pe.config,name);
+      fprintf(stderr, "Error opening leader %llx for event %s\n", pe.config,name);
       perror("Error is");
     }
 #endif
@@ -205,14 +205,13 @@ public:
   void Stop(void) {
     count=0;
     cycles=0;
+    size_t ign;
 #ifdef __linux__
-    ssize_t ign;
     if ( fd!= -1) {
       ::ioctl(fd, PERF_EVENT_IOC_DISABLE, 0);
       ::ioctl(cyclefd, PERF_EVENT_IOC_DISABLE, 0);
       ign=::read(fd, &count, sizeof(long long));
-      ign+=::read(cyclefd, &cycles, sizeof(long long));
+      ign=::read(cyclefd, &cycles, sizeof(long long));
-      assert(ign=2*sizeof(long long));
     }
     elapsed = cyclecount() - begin;
 #else

lib/Simd.h

@@ -172,8 +172,8 @@ namespace Grid {
 
 };
 
-#include <Grid/simd/Grid_vector_types.h>
+#include "simd/Grid_vector_types.h"
-#include <Grid/simd/Grid_vector_unops.h>
+#include "simd/Grid_vector_unops.h"
 
 namespace Grid {
   // Default precision

lib/Stat.cc

@@ -1,9 +1,11 @@
-#include <Grid/GridCore.h>
+#include <Grid/Grid.h>
-#include <Grid/perfmon/PerfCount.h>
+#include <Grid/PerfCount.h>
-#include <Grid/perfmon/Stat.h>
+#include <Grid/Stat.h>
+
 
 namespace Grid { 
 
+
 bool PmuStat::pmu_initialized=false;
 
 

lib/Threads.h

@@ -37,9 +37,13 @@ Author: paboyle <paboyle@ph.ed.ac.uk>
 
 #ifdef GRID_OMP
 #include <omp.h>
-
+#ifdef GRID_NUMA
 #define PARALLEL_FOR_LOOP        _Pragma("omp parallel for schedule(static)")
 #define PARALLEL_FOR_LOOP_INTERN _Pragma("omp for schedule(static)")
+#else
+#define PARALLEL_FOR_LOOP        _Pragma("omp parallel for schedule(runtime)")
+#define PARALLEL_FOR_LOOP_INTERN _Pragma("omp for schedule(runtime)")
+#endif
 #define PARALLEL_NESTED_LOOP2 _Pragma("omp parallel for collapse(2)")
 #define PARALLEL_REGION       _Pragma("omp parallel")
 #define PARALLEL_CRITICAL     _Pragma("omp critical")
@@ -51,9 +55,6 @@ Author: paboyle <paboyle@ph.ed.ac.uk>
 #define PARALLEL_CRITICAL
 #endif
 
-#define parallel_for       PARALLEL_FOR_LOOP for
-#define parallel_for_nest2 PARALLEL_NESTED_LOOP2 for
-
 namespace Grid {
 
   // Introduce a class to gain deterministic bit reproducible reduction.

lib/algorithms/CoarsenedMatrix.h

@@ -267,7 +267,8 @@ namespace Grid {
       SimpleCompressor<siteVector> compressor;
       Stencil.HaloExchange(in,compressor);
 
-      parallel_for(int ss=0;ss<Grid()->oSites();ss++){
+PARALLEL_FOR_LOOP
+      for(int ss=0;ss<Grid()->oSites();ss++){
         siteVector res = zero;
 	siteVector nbr;
 	int ptype;
@@ -379,7 +380,8 @@ namespace Grid {
 	  Subspace.ProjectToSubspace(oProj,oblock);
 	  //	  blockProject(iProj,iblock,Subspace.subspace);
 	  //	  blockProject(oProj,oblock,Subspace.subspace);
-	  parallel_for(int ss=0;ss<Grid()->oSites();ss++){
+PARALLEL_FOR_LOOP
+	  for(int ss=0;ss<Grid()->oSites();ss++){
 	    for(int j=0;j<nbasis;j++){
 	      if( disp!= 0 ) {
 		A[p]._odata[ss](j,i) = oProj._odata[ss](j);
@@ -425,7 +427,7 @@ namespace Grid {
 	A[p]=zero;
       }
 
-      GridParallelRNG  RNG(Grid()); RNG.SeedFixedIntegers(std::vector<int>({55,72,19,17,34}));
+      GridParallelRNG  RNG(Grid()); RNG.SeedRandomDevice();
       Lattice<iScalar<CComplex> > val(Grid()); random(RNG,val);
 
       Complex one(1.0);

lib/algorithms/LinearOperator.h

@@ -235,7 +235,7 @@ namespace Grid {
 	Field tmp(in._grid);
 
 	_Mat.MeooeDag(in,tmp);
-        _Mat.MooeeInvDag(tmp,out);
+	_Mat.MooeeInvDag(tmp,out);
 	_Mat.MeooeDag(out,tmp);
 
 	_Mat.MooeeDag(in,out);

lib/algorithms/approx/Chebyshev.h

@@ -197,9 +197,8 @@ namespace Grid {
     void operator() (LinearOperatorBase<Field> &Linop, const Field &in, Field &out) {
 
       GridBase *grid=in._grid;
-
+//std::cout << "Chevyshef(): in._grid="<<in._grid<<std::endl;
-      // std::cout << "Chevyshef(): in._grid="<<in._grid<<std::endl;
+//<<" Linop.Grid()="<<Linop.Grid()<<"Linop.RedBlackGrid()="<<Linop.RedBlackGrid()<<std::endl;
-      //std::cout <<" Linop.Grid()="<<Linop.Grid()<<"Linop.RedBlackGrid()="<<Linop.RedBlackGrid()<<std::endl;
 
       int vol=grid->gSites();