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dcfc4ed81f
Author | SHA1 | Date | |
---|---|---|---|
dcfc4ed81f | |||
32e6d58356 |
@ -191,7 +191,7 @@ public:
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Lattice<sobj> pgbuf(&pencil_g);
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autoView(pgbuf_v , pgbuf, CpuWrite);
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//std::cout << "CPU view" << std::endl;
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std::cout << "CPU view" << std::endl;
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typedef typename FFTW<scalar>::FFTW_scalar FFTW_scalar;
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typedef typename FFTW<scalar>::FFTW_plan FFTW_plan;
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@ -215,7 +215,7 @@ public:
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else if ( sign == forward ) div = 1.0;
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else assert(0);
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//std::cout << GridLogPerformance<<"Making FFTW plan" << std::endl;
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std::cout << GridLogPerformance<<"Making FFTW plan" << std::endl;
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FFTW_plan p;
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{
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FFTW_scalar *in = (FFTW_scalar *)&pgbuf_v[0];
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@ -229,7 +229,7 @@ public:
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}
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// Barrel shift and collect global pencil
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//std::cout << GridLogPerformance<<"Making pencil" << std::endl;
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std::cout << GridLogPerformance<<"Making pencil" << std::endl;
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Coordinate lcoor(Nd), gcoor(Nd);
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result = source;
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int pc = processor_coor[dim];
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@ -251,7 +251,7 @@ public:
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}
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}
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//std::cout <<GridLogPerformance<< "Looping orthog" << std::endl;
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std::cout <<GridLogPerformance<< "Looping orthog" << std::endl;
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// Loop over orthog coords
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int NN=pencil_g.lSites();
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GridStopWatch timer;
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@ -274,7 +274,7 @@ public:
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usec += timer.useconds();
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flops+= flops_call*NN;
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//std::cout <<GridLogPerformance<< "Writing back results " << std::endl;
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std::cout <<GridLogPerformance<< "Writing back results " << std::endl;
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// writing out result
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{
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autoView(pgbuf_v,pgbuf,CpuRead);
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@ -291,7 +291,7 @@ public:
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}
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result = result*div;
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//std::cout <<GridLogPerformance<< "Destroying plan " << std::endl;
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std::cout <<GridLogPerformance<< "Destroying plan " << std::endl;
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// destroying plan
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FFTW<scalar>::fftw_destroy_plan(p);
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#endif
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@ -277,38 +277,6 @@ public:
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assert(0);
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}
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};
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template<class Matrix,class Field>
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class ShiftedNonHermitianLinearOperator : public LinearOperatorBase<Field> {
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Matrix &_Mat;
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RealD shift;
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public:
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ShiftedNonHermitianLinearOperator(Matrix &Mat,RealD shft): _Mat(Mat),shift(shft){};
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// Support for coarsening to a multigrid
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void OpDiag (const Field &in, Field &out) {
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_Mat.Mdiag(in,out);
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out = out + shift*in;
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}
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void OpDir (const Field &in, Field &out,int dir,int disp) {
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_Mat.Mdir(in,out,dir,disp);
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}
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void OpDirAll (const Field &in, std::vector<Field> &out){
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_Mat.MdirAll(in,out);
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};
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void Op (const Field &in, Field &out){
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_Mat.M(in,out);
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out = out + shift * in;
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}
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void AdjOp (const Field &in, Field &out){
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_Mat.Mdag(in,out);
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out = out + shift * in;
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}
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void HermOpAndNorm(const Field &in, Field &out,RealD &n1,RealD &n2){
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assert(0);
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}
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void HermOp(const Field &in, Field &out){
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assert(0);
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}
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};
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//////////////////////////////////////////////////////////
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// Even Odd Schur decomp operators; there are several
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@ -208,8 +208,8 @@ public:
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assert(Bkn.size()==batchCount);
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assert(Cmn.size()==batchCount);
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//assert(OpA!=GridBLAS_OP_T); // Complex case expect no transpose
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//assert(OpB!=GridBLAS_OP_T);
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assert(OpA!=GridBLAS_OP_T); // Complex case expect no transpose
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assert(OpB!=GridBLAS_OP_T);
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int lda = m; // m x k column major
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int ldb = k; // k x n column major
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@ -367,67 +367,28 @@ public:
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Eigen::Map<Eigen::MatrixXcd> eAmk(Amk[p],m,k);
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Eigen::Map<Eigen::MatrixXcd> eBkn(Bkn[p],k,n);
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Eigen::Map<Eigen::MatrixXcd> eCmn(Cmn[p],m,n);
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if (std::abs(beta) != 0.0)
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eCmn = beta * eCmn + alpha * eAmk * eBkn ;
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else
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eCmn = alpha * eAmk * eBkn ;
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eCmn = beta * eCmn + alpha * eAmk * eBkn ;
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});
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} else if ( (OpA == GridBLAS_OP_C ) && (OpB == GridBLAS_OP_N) ) {
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thread_for (p, batchCount, {
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Eigen::Map<Eigen::MatrixXcd> eAmk(Amk[p],k,m);
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Eigen::Map<Eigen::MatrixXcd> eBkn(Bkn[p],k,n);
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Eigen::Map<Eigen::MatrixXcd> eCmn(Cmn[p],m,n);
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if (std::abs(beta) != 0.0)
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eCmn = beta * eCmn + alpha * eAmk.adjoint() * eBkn ;
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else
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eCmn = alpha * eAmk.adjoint() * eBkn ;
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});
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} else if ( (OpA == GridBLAS_OP_T ) && (OpB == GridBLAS_OP_N) ) {
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thread_for (p, batchCount, {
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Eigen::Map<Eigen::MatrixXcd> eAmk(Amk[p],k,m);
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Eigen::Map<Eigen::MatrixXcd> eBkn(Bkn[p],k,n);
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Eigen::Map<Eigen::MatrixXcd> eCmn(Cmn[p],m,n);
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if (std::abs(beta) != 0.0)
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eCmn = beta * eCmn + alpha * eAmk.transpose() * eBkn ;
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else
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eCmn = alpha * eAmk.transpose() * eBkn ;
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eCmn = beta * eCmn + alpha * eAmk.adjoint() * eBkn ;
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});
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} else if ( (OpA == GridBLAS_OP_N ) && (OpB == GridBLAS_OP_C) ) {
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thread_for (p, batchCount, {
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Eigen::Map<Eigen::MatrixXcd> eAmk(Amk[p],m,k);
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Eigen::Map<Eigen::MatrixXcd> eBkn(Bkn[p],n,k);
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Eigen::Map<Eigen::MatrixXcd> eCmn(Cmn[p],m,n);
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if (std::abs(beta) != 0.0)
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eCmn = beta * eCmn + alpha * eAmk * eBkn.adjoint() ;
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else
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eCmn = alpha * eAmk * eBkn.adjoint() ;
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});
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} else if ( (OpA == GridBLAS_OP_N ) && (OpB == GridBLAS_OP_T) ) {
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thread_for (p, batchCount, {
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Eigen::Map<Eigen::MatrixXcd> eAmk(Amk[p],m,k);
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Eigen::Map<Eigen::MatrixXcd> eBkn(Bkn[p],n,k);
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Eigen::Map<Eigen::MatrixXcd> eCmn(Cmn[p],m,n);
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eCmn = beta * eCmn + alpha * eAmk * eBkn.transpose() ;
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eCmn = beta * eCmn + alpha * eAmk * eBkn.adjoint() ;
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});
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} else if ( (OpA == GridBLAS_OP_C ) && (OpB == GridBLAS_OP_C) ) {
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thread_for (p, batchCount, {
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Eigen::Map<Eigen::MatrixXcd> eAmk(Amk[p],k,m);
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Eigen::Map<Eigen::MatrixXcd> eBkn(Bkn[p],n,k);
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Eigen::Map<Eigen::MatrixXcd> eCmn(Cmn[p],m,n);
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if (std::abs(beta) != 0.0)
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eCmn = beta * eCmn + alpha * eAmk.adjoint() * eBkn.adjoint() ;
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else
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eCmn = alpha * eAmk.adjoint() * eBkn.adjoint() ;
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} );
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} else if ( (OpA == GridBLAS_OP_T ) && (OpB == GridBLAS_OP_T) ) {
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thread_for (p, batchCount, {
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Eigen::Map<Eigen::MatrixXcd> eAmk(Amk[p],k,m);
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Eigen::Map<Eigen::MatrixXcd> eBkn(Bkn[p],n,k);
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Eigen::Map<Eigen::MatrixXcd> eCmn(Cmn[p],m,n);
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if (std::abs(beta) != 0.0)
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eCmn = beta * eCmn + alpha * eAmk.transpose() * eBkn.transpose() ;
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else
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eCmn = alpha * eAmk.transpose() * eBkn.transpose() ;
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eCmn = beta * eCmn + alpha * eAmk.adjoint() * eBkn.adjoint() ;
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} );
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} else {
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assert(0);
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@ -453,8 +414,8 @@ public:
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RealD t2=usecond();
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int32_t batchCount = Amk.size();
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//assert(OpA!=GridBLAS_OP_T); // Complex case expect no transpose
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//assert(OpB!=GridBLAS_OP_T);
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assert(OpA!=GridBLAS_OP_T); // Complex case expect no transpose
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assert(OpB!=GridBLAS_OP_T);
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int lda = m; // m x k column major
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int ldb = k; // k x n column major
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@ -553,70 +514,28 @@ public:
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Eigen::Map<Eigen::MatrixXcf> eAmk(Amk[p],m,k);
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Eigen::Map<Eigen::MatrixXcf> eBkn(Bkn[p],k,n);
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Eigen::Map<Eigen::MatrixXcf> eCmn(Cmn[p],m,n);
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if (std::abs(beta) != 0.0)
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eCmn = beta * eCmn + alpha * eAmk * eBkn ;
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else
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eCmn = alpha * eAmk * eBkn ;
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eCmn = beta * eCmn + alpha * eAmk * eBkn ;
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});
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} else if ( (OpA == GridBLAS_OP_C ) && (OpB == GridBLAS_OP_N) ) {
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thread_for (p, batchCount, {
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Eigen::Map<Eigen::MatrixXcf> eAmk(Amk[p],k,m);
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Eigen::Map<Eigen::MatrixXcf> eBkn(Bkn[p],k,n);
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Eigen::Map<Eigen::MatrixXcf> eCmn(Cmn[p],m,n);
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if (std::abs(beta) != 0.0)
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eCmn = beta * eCmn + alpha * eAmk.adjoint() * eBkn ;
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else
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eCmn = alpha * eAmk.adjoint() * eBkn ;
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});
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} else if ( (OpA == GridBLAS_OP_T ) && (OpB == GridBLAS_OP_N) ) {
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thread_for (p, batchCount, {
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Eigen::Map<Eigen::MatrixXcf> eAmk(Amk[p],k,m);
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Eigen::Map<Eigen::MatrixXcf> eBkn(Bkn[p],k,n);
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Eigen::Map<Eigen::MatrixXcf> eCmn(Cmn[p],m,n);
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if (std::abs(beta) != 0.0)
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eCmn = beta * eCmn + alpha * eAmk.transpose() * eBkn ;
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else
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eCmn = alpha * eAmk.transpose() * eBkn ;
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eCmn = beta * eCmn + alpha * eAmk.adjoint() * eBkn ;
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});
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} else if ( (OpA == GridBLAS_OP_N ) && (OpB == GridBLAS_OP_C) ) {
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thread_for (p, batchCount, {
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Eigen::Map<Eigen::MatrixXcf> eAmk(Amk[p],m,k);
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Eigen::Map<Eigen::MatrixXcf> eBkn(Bkn[p],n,k);
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Eigen::Map<Eigen::MatrixXcf> eCmn(Cmn[p],m,n);
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if (std::abs(beta) != 0.0)
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eCmn = beta * eCmn + alpha * eAmk * eBkn.adjoint() ;
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else
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eCmn = alpha * eAmk * eBkn.adjoint() ;
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});
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} else if ( (OpA == GridBLAS_OP_N ) && (OpB == GridBLAS_OP_T) ) {
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thread_for (p, batchCount, {
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Eigen::Map<Eigen::MatrixXcf> eAmk(Amk[p],m,k);
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Eigen::Map<Eigen::MatrixXcf> eBkn(Bkn[p],n,k);
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Eigen::Map<Eigen::MatrixXcf> eCmn(Cmn[p],m,n);
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if (std::abs(beta) != 0.0)
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eCmn = beta * eCmn + alpha * eAmk * eBkn.transpose() ;
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else
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eCmn = alpha * eAmk * eBkn.transpose() ;
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eCmn = beta * eCmn + alpha * eAmk * eBkn.adjoint() ;
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});
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} else if ( (OpA == GridBLAS_OP_C ) && (OpB == GridBLAS_OP_C) ) {
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thread_for (p, batchCount, {
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Eigen::Map<Eigen::MatrixXcf> eAmk(Amk[p],k,m);
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Eigen::Map<Eigen::MatrixXcf> eBkn(Bkn[p],n,k);
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Eigen::Map<Eigen::MatrixXcf> eCmn(Cmn[p],m,n);
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if (std::abs(beta) != 0.0)
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eCmn = beta * eCmn + alpha * eAmk.adjoint() * eBkn.adjoint() ;
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else
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eCmn = alpha * eAmk.adjoint() * eBkn.adjoint() ;
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} );
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} else if ( (OpA == GridBLAS_OP_T ) && (OpB == GridBLAS_OP_T) ) {
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thread_for (p, batchCount, {
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Eigen::Map<Eigen::MatrixXcf> eAmk(Amk[p],k,m);
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Eigen::Map<Eigen::MatrixXcf> eBkn(Bkn[p],n,k);
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Eigen::Map<Eigen::MatrixXcf> eCmn(Cmn[p],m,n);
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if (std::abs(beta) != 0.0)
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eCmn = beta * eCmn + alpha * eAmk.transpose() * eBkn.transpose() ;
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else
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eCmn = alpha * eAmk.transpose() * eBkn.transpose() ;
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eCmn = beta * eCmn + alpha * eAmk.adjoint() * eBkn.adjoint() ;
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} );
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} else {
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assert(0);
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@ -742,41 +661,29 @@ public:
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Eigen::Map<Eigen::MatrixXf> eAmk(Amk[p],m,k);
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Eigen::Map<Eigen::MatrixXf> eBkn(Bkn[p],k,n);
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Eigen::Map<Eigen::MatrixXf> eCmn(Cmn[p],m,n);
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if (std::abs(beta) != 0.0)
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eCmn = beta * eCmn + alpha * eAmk * eBkn ;
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else
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eCmn = alpha * eAmk * eBkn ;
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eCmn = beta * eCmn + alpha * eAmk * eBkn ;
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});
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} else if ( (OpA == GridBLAS_OP_T ) && (OpB == GridBLAS_OP_N) ) {
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thread_for (p, batchCount, {
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Eigen::Map<Eigen::MatrixXf> eAmk(Amk[p],k,m);
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Eigen::Map<Eigen::MatrixXf> eBkn(Bkn[p],k,n);
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Eigen::Map<Eigen::MatrixXf> eCmn(Cmn[p],m,n);
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if (std::abs(beta) != 0.0)
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eCmn = beta * eCmn + alpha * eAmk.transpose() * eBkn ;
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else
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eCmn = alpha * eAmk.transpose() * eBkn ;
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eCmn = beta * eCmn + alpha * eAmk.transpose() * eBkn ;
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});
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} else if ( (OpA == GridBLAS_OP_N ) && (OpB == GridBLAS_OP_T) ) {
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thread_for (p, batchCount, {
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Eigen::Map<Eigen::MatrixXf> eAmk(Amk[p],m,k);
|
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Eigen::Map<Eigen::MatrixXf> eBkn(Bkn[p],n,k);
|
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Eigen::Map<Eigen::MatrixXf> eCmn(Cmn[p],m,n);
|
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if (std::abs(beta) != 0.0)
|
||||
eCmn = beta * eCmn + alpha * eAmk * eBkn.transpose() ;
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else
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eCmn = alpha * eAmk * eBkn.transpose() ;
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eCmn = beta * eCmn + alpha * eAmk * eBkn.transpose() ;
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});
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} else if ( (OpA == GridBLAS_OP_T ) && (OpB == GridBLAS_OP_T) ) {
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thread_for (p, batchCount, {
|
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Eigen::Map<Eigen::MatrixXf> eAmk(Amk[p],k,m);
|
||||
Eigen::Map<Eigen::MatrixXf> eBkn(Bkn[p],n,k);
|
||||
Eigen::Map<Eigen::MatrixXf> eCmn(Cmn[p],m,n);
|
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if (std::abs(beta) != 0.0)
|
||||
eCmn = beta * eCmn + alpha * eAmk.transpose() * eBkn.transpose() ;
|
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else
|
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eCmn = alpha * eAmk.transpose() * eBkn.transpose() ;
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});
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eCmn = beta * eCmn + alpha * eAmk.transpose() * eBkn.transpose() ;
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} );
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} else {
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assert(0);
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}
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@ -902,40 +809,28 @@ public:
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Eigen::Map<Eigen::MatrixXd> eAmk(Amk[p],m,k);
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Eigen::Map<Eigen::MatrixXd> eBkn(Bkn[p],k,n);
|
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Eigen::Map<Eigen::MatrixXd> eCmn(Cmn[p],m,n);
|
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if (std::abs(beta) != 0.0)
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eCmn = beta * eCmn + alpha * eAmk * eBkn ;
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else
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eCmn = alpha * eAmk * eBkn ;
|
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eCmn = beta * eCmn + alpha * eAmk * eBkn ;
|
||||
});
|
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} else if ( (OpA == GridBLAS_OP_T ) && (OpB == GridBLAS_OP_N) ) {
|
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thread_for (p, batchCount, {
|
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Eigen::Map<Eigen::MatrixXd> eAmk(Amk[p],k,m);
|
||||
Eigen::Map<Eigen::MatrixXd> eBkn(Bkn[p],k,n);
|
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Eigen::Map<Eigen::MatrixXd> eCmn(Cmn[p],m,n);
|
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if (std::abs(beta) != 0.0)
|
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eCmn = beta * eCmn + alpha * eAmk.transpose() * eBkn ;
|
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else
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eCmn = alpha * eAmk.transpose() * eBkn ;
|
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eCmn = beta * eCmn + alpha * eAmk.transpose() * eBkn ;
|
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});
|
||||
} else if ( (OpA == GridBLAS_OP_N ) && (OpB == GridBLAS_OP_T) ) {
|
||||
thread_for (p, batchCount, {
|
||||
Eigen::Map<Eigen::MatrixXd> eAmk(Amk[p],m,k);
|
||||
Eigen::Map<Eigen::MatrixXd> eBkn(Bkn[p],n,k);
|
||||
Eigen::Map<Eigen::MatrixXd> eCmn(Cmn[p],m,n);
|
||||
if (std::abs(beta) != 0.0)
|
||||
eCmn = beta * eCmn + alpha * eAmk * eBkn.transpose() ;
|
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else
|
||||
eCmn = alpha * eAmk * eBkn.transpose() ;
|
||||
eCmn = beta * eCmn + alpha * eAmk * eBkn.transpose() ;
|
||||
});
|
||||
} else if ( (OpA == GridBLAS_OP_T ) && (OpB == GridBLAS_OP_T) ) {
|
||||
thread_for (p, batchCount, {
|
||||
Eigen::Map<Eigen::MatrixXd> eAmk(Amk[p],k,m);
|
||||
Eigen::Map<Eigen::MatrixXd> eBkn(Bkn[p],n,k);
|
||||
Eigen::Map<Eigen::MatrixXd> eCmn(Cmn[p],m,n);
|
||||
if (std::abs(beta) != 0.0)
|
||||
eCmn = beta * eCmn + alpha * eAmk.transpose() * eBkn.transpose() ;
|
||||
else
|
||||
eCmn = alpha * eAmk.transpose() * eBkn.transpose() ;
|
||||
eCmn = beta * eCmn + alpha * eAmk.transpose() * eBkn.transpose() ;
|
||||
});
|
||||
} else {
|
||||
assert(0);
|
||||
|
@ -245,10 +245,9 @@ until convergence
|
||||
_HermOp(src_n,tmp);
|
||||
// std::cout << GridLogMessage<< tmp<<std::endl; exit(0);
|
||||
// std::cout << GridLogIRL << " _HermOp " << norm2(tmp) << std::endl;
|
||||
// RealD vnum = real(innerProduct(src_n,tmp)); // HermOp.
|
||||
RealD vnum = real(innerProduct(tmp,tmp)); // HermOp^2.
|
||||
RealD vnum = real(innerProduct(src_n,tmp)); // HermOp.
|
||||
RealD vden = norm2(src_n);
|
||||
RealD na = std::sqrt(vnum/vden);
|
||||
RealD na = vnum/vden;
|
||||
if (fabs(evalMaxApprox/na - 1.0) < 0.0001)
|
||||
i=_MAX_ITER_IRL_MEVAPP_;
|
||||
evalMaxApprox = na;
|
||||
@ -256,7 +255,6 @@ until convergence
|
||||
src_n = tmp;
|
||||
}
|
||||
}
|
||||
std::cout << GridLogIRL << " Final evalMaxApprox " << evalMaxApprox << std::endl;
|
||||
|
||||
std::vector<RealD> lme(Nm);
|
||||
std::vector<RealD> lme2(Nm);
|
||||
|
@ -97,7 +97,7 @@ public:
|
||||
|
||||
RealD scale;
|
||||
|
||||
ConjugateGradient<FineField> CG(1.0e-3,400,false);
|
||||
ConjugateGradient<FineField> CG(1.0e-2,100,false);
|
||||
FineField noise(FineGrid);
|
||||
FineField Mn(FineGrid);
|
||||
|
||||
@ -110,7 +110,7 @@ public:
|
||||
|
||||
hermop.Op(noise,Mn); std::cout<<GridLogMessage << "noise ["<<b<<"] <n|MdagM|n> "<<norm2(Mn)<<std::endl;
|
||||
|
||||
for(int i=0;i<4;i++){
|
||||
for(int i=0;i<1;i++){
|
||||
|
||||
CG(hermop,noise,subspace[b]);
|
||||
|
||||
@ -146,7 +146,7 @@ public:
|
||||
|
||||
DiracOp.Op(noise,Mn); std::cout<<GridLogMessage << "noise ["<<b<<"] <n|Op|n> "<<innerProduct(noise,Mn)<<std::endl;
|
||||
|
||||
for(int i=0;i<2;i++){
|
||||
for(int i=0;i<3;i++){
|
||||
// void operator() (const Field &src, Field &psi){
|
||||
#if 1
|
||||
std::cout << GridLogMessage << " inverting on noise "<<std::endl;
|
||||
|
@ -441,20 +441,8 @@ public:
|
||||
std::cout << GridLogMessage<<"CoarsenOperator inv "<<tinv<<" us"<<std::endl;
|
||||
}
|
||||
#else
|
||||
//////////////////////////////////////////////////////////////////////
|
||||
// Galerkin projection of matrix
|
||||
//////////////////////////////////////////////////////////////////////
|
||||
void CoarsenOperator(LinearOperatorBase<Lattice<Fobj> > &linop,
|
||||
Aggregation<Fobj,CComplex,nbasis> & Subspace)
|
||||
{
|
||||
CoarsenOperator(linop,Subspace,Subspace);
|
||||
}
|
||||
//////////////////////////////////////////////////////////////////////
|
||||
// Petrov - Galerkin projection of matrix
|
||||
//////////////////////////////////////////////////////////////////////
|
||||
void CoarsenOperator(LinearOperatorBase<Lattice<Fobj> > &linop,
|
||||
Aggregation<Fobj,CComplex,nbasis> & U,
|
||||
Aggregation<Fobj,CComplex,nbasis> & V)
|
||||
{
|
||||
std::cout << GridLogMessage<< "GeneralCoarsenMatrix "<< std::endl;
|
||||
GridBase *grid = FineGrid();
|
||||
@ -470,9 +458,11 @@ public:
|
||||
// Orthogonalise the subblocks over the basis
|
||||
/////////////////////////////////////////////////////////////
|
||||
CoarseScalar InnerProd(CoarseGrid());
|
||||
blockOrthogonalise(InnerProd,V.subspace);
|
||||
blockOrthogonalise(InnerProd,U.subspace);
|
||||
blockOrthogonalise(InnerProd,Subspace.subspace);
|
||||
|
||||
// for(int s=0;s<Subspace.subspace.size();s++){
|
||||
// std::cout << " subspace norm "<<norm2(Subspace.subspace[s])<<std::endl;
|
||||
// }
|
||||
const int npoint = geom.npoint;
|
||||
|
||||
Coordinate clatt = CoarseGrid()->GlobalDimensions();
|
||||
@ -552,7 +542,7 @@ public:
|
||||
std::cout << GridLogMessage<< "CoarsenMatrixColoured vec "<<i<<"/"<<nbasis<< std::endl;
|
||||
for(int p=0;p<npoint;p++){ // Loop over momenta in npoint
|
||||
tphaseBZ-=usecond();
|
||||
phaV = phaF[p]*V.subspace[i];
|
||||
phaV = phaF[p]*Subspace.subspace[i];
|
||||
tphaseBZ+=usecond();
|
||||
|
||||
/////////////////////////////////////////////////////////////////////
|
||||
@ -565,7 +555,7 @@ public:
|
||||
// std::cout << i << " " <<p << " MphaV "<<norm2(MphaV)<<" "<<norm2(phaV)<<std::endl;
|
||||
|
||||
tproj-=usecond();
|
||||
blockProject(coarseInner,MphaV,U.subspace);
|
||||
blockProject(coarseInner,MphaV,Subspace.subspace);
|
||||
coarseInner = conjugate(pha[p]) * coarseInner;
|
||||
|
||||
ComputeProj[p] = coarseInner;
|
||||
|
@ -69,7 +69,7 @@ public:
|
||||
}
|
||||
|
||||
// FIXME: hack for the copy constructor: it must be avoided to avoid single thread loop
|
||||
void construct(pointer __p, const _Tp& __val) { };
|
||||
void construct(pointer __p, const _Tp& __val) { assert(0);};
|
||||
void construct(pointer __p) { };
|
||||
void destroy(pointer __p) { };
|
||||
};
|
||||
|
@ -234,9 +234,6 @@ void *MemoryManager::ViewOpen(void* _CpuPtr,size_t bytes,ViewMode mode,ViewAdvis
|
||||
}
|
||||
void MemoryManager::EvictVictims(uint64_t bytes)
|
||||
{
|
||||
if(bytes>=DeviceMaxBytes) {
|
||||
printf("EvictVictims bytes %ld DeviceMaxBytes %ld\n",bytes,DeviceMaxBytes);
|
||||
}
|
||||
assert(bytes<DeviceMaxBytes);
|
||||
while(bytes+DeviceLRUBytes > DeviceMaxBytes){
|
||||
if ( DeviceLRUBytes > 0){
|
||||
|
@ -149,8 +149,7 @@ public:
|
||||
sizeof(obj),d*100+p);
|
||||
|
||||
}
|
||||
if (!list.empty()) // avoid triggering assert in comms == none
|
||||
CommsComplete(list);
|
||||
CommsComplete(list);
|
||||
for(int p=1;p<_processors[d];p++){
|
||||
accum = accum + column[p];
|
||||
}
|
||||
|
@ -438,15 +438,8 @@ double CartesianCommunicator::StencilSendToRecvFromBegin(std::vector<CommsReques
|
||||
list.push_back(rrq);
|
||||
off_node_bytes+=rbytes;
|
||||
}
|
||||
#ifdef NVLINK_GET
|
||||
else {
|
||||
void *shm = (void *) this->ShmBufferTranslate(from,xmit);
|
||||
assert(shm!=NULL);
|
||||
acceleratorCopyDeviceToDeviceAsynch(shm,recv,rbytes);
|
||||
}
|
||||
#endif
|
||||
}
|
||||
// This is a NVLINK PUT
|
||||
|
||||
if (dox) {
|
||||
if ( (gdest == MPI_UNDEFINED) || Stencil_force_mpi ) {
|
||||
tag= dir+_processor*32;
|
||||
@ -455,11 +448,9 @@ double CartesianCommunicator::StencilSendToRecvFromBegin(std::vector<CommsReques
|
||||
list.push_back(xrq);
|
||||
off_node_bytes+=xbytes;
|
||||
} else {
|
||||
#ifndef NVLINK_GET
|
||||
void *shm = (void *) this->ShmBufferTranslate(dest,recv);
|
||||
assert(shm!=NULL);
|
||||
acceleratorCopyDeviceToDeviceAsynch(xmit,shm,xbytes);
|
||||
#endif
|
||||
}
|
||||
}
|
||||
return off_node_bytes;
|
||||
@ -468,7 +459,7 @@ double CartesianCommunicator::StencilSendToRecvFromBegin(std::vector<CommsReques
|
||||
void CartesianCommunicator::StencilSendToRecvFromComplete(std::vector<CommsRequest_t> &list,int dir)
|
||||
{
|
||||
int nreq=list.size();
|
||||
/*finishes Get/Put*/
|
||||
|
||||
acceleratorCopySynchronise();
|
||||
|
||||
if (nreq==0) return;
|
||||
@ -755,31 +746,26 @@ double CartesianCommunicator::StencilSendToRecvFromBegin(std::vector<CommsReques
|
||||
}
|
||||
void CartesianCommunicator::StencilSendToRecvFromComplete(std::vector<CommsRequest_t> &list,int dir)
|
||||
{
|
||||
acceleratorCopySynchronise(); // Complete all pending copy transfers D2D
|
||||
// int nreq=list.size();
|
||||
|
||||
std::vector<MPI_Status> status;
|
||||
std::vector<MPI_Request> MpiRequests;
|
||||
|
||||
for(int r=0;r<list.size();r++){
|
||||
// Must check each Send buf is clear to reuse
|
||||
if ( list[r].PacketType == InterNodeXmitISend ) MpiRequests.push_back(list[r].req);
|
||||
// if ( list[r].PacketType == InterNodeRecv ) MpiRequests.push_back(list[r].req); // Already "Test" passed
|
||||
}
|
||||
// if (nreq==0) return;
|
||||
// std::vector<MPI_Status> status(nreq);
|
||||
// std::vector<MPI_Request> MpiRequests(nreq);
|
||||
|
||||
int nreq=MpiRequests.size();
|
||||
|
||||
if (nreq>0) {
|
||||
status.resize(MpiRequests.size());
|
||||
int ierr = MPI_Waitall(MpiRequests.size(),&MpiRequests[0],&status[0]); // Sends are guaranteed in order. No harm in not completing.
|
||||
assert(ierr==0);
|
||||
}
|
||||
// for(int r=0;r<nreq;r++){
|
||||
// MpiRequests[r] = list[r].req;
|
||||
// }
|
||||
|
||||
// int ierr = MPI_Waitall(nreq,&MpiRequests[0],&status[0]); // Sends are guaranteed in order. No harm in not completing.
|
||||
// assert(ierr==0);
|
||||
|
||||
// for(int r=0;r<nreq;r++){
|
||||
// if ( list[r].PacketType==InterNodeRecv ) {
|
||||
// acceleratorCopyToDeviceAsynch(list[r].host_buf,list[r].device_buf,list[r].bytes);
|
||||
// }
|
||||
// }
|
||||
|
||||
acceleratorCopySynchronise(); // Complete all pending copy transfers D2D
|
||||
|
||||
list.resize(0); // Delete the list
|
||||
this->HostBufferFreeAll(); // Clean up the buffer allocs
|
||||
|
@ -91,7 +91,7 @@ void CartesianCommunicator::SendToRecvFrom(void *xmit,
|
||||
{
|
||||
assert(0);
|
||||
}
|
||||
void CartesianCommunicator::CommsComplete(std::vector<CommsRequest_t> &list){ assert(list.size()==0);}
|
||||
void CartesianCommunicator::CommsComplete(std::vector<CommsRequest_t> &list){ assert(0);}
|
||||
void CartesianCommunicator::SendToRecvFromBegin(std::vector<CommsRequest_t> &list,
|
||||
void *xmit,
|
||||
int dest,
|
||||
|
@ -137,7 +137,7 @@ public:
|
||||
///////////////////////////////////////////////////
|
||||
static void SharedMemoryAllocate(uint64_t bytes, int flags);
|
||||
static void SharedMemoryFree(void);
|
||||
// static void SharedMemoryCopy(void *dest,void *src,size_t bytes);
|
||||
static void SharedMemoryCopy(void *dest,void *src,size_t bytes);
|
||||
static void SharedMemoryZero(void *dest,size_t bytes);
|
||||
|
||||
};
|
||||
|
@ -542,12 +542,12 @@ void GlobalSharedMemory::SharedMemoryAllocate(uint64_t bytes, int flags)
|
||||
// Each MPI rank should allocate our own buffer
|
||||
///////////////////////////////////////////////////////////////////////////////////////////////////////////
|
||||
#ifndef ACCELERATOR_AWARE_MPI
|
||||
// printf("Host buffer allocate for GPU non-aware MPI\n");
|
||||
printf("Host buffer allocate for GPU non-aware MPI\n");
|
||||
#if 0
|
||||
HostCommBuf= acceleratorAllocHost(bytes);
|
||||
#else
|
||||
HostCommBuf= malloc(bytes); /// CHANGE THIS TO malloc_host
|
||||
#if 0
|
||||
#ifdef HAVE_NUMAIF_H
|
||||
#warning "Moving host buffers to specific NUMA domain"
|
||||
int numa;
|
||||
char *numa_name=(char *)getenv("MPI_BUF_NUMA");
|
||||
@ -916,14 +916,14 @@ void GlobalSharedMemory::SharedMemoryZero(void *dest,size_t bytes)
|
||||
bzero(dest,bytes);
|
||||
#endif
|
||||
}
|
||||
//void GlobalSharedMemory::SharedMemoryCopy(void *dest,void *src,size_t bytes)
|
||||
//{
|
||||
//#if defined(GRID_CUDA) || defined(GRID_HIP) || defined(GRID_SYCL)
|
||||
// acceleratorCopyToDevice(src,dest,bytes);
|
||||
//#else
|
||||
// bcopy(src,dest,bytes);
|
||||
//#endif
|
||||
//}
|
||||
void GlobalSharedMemory::SharedMemoryCopy(void *dest,void *src,size_t bytes)
|
||||
{
|
||||
#if defined(GRID_CUDA) || defined(GRID_HIP) || defined(GRID_SYCL)
|
||||
acceleratorCopyToDevice(src,dest,bytes);
|
||||
#else
|
||||
bcopy(src,dest,bytes);
|
||||
#endif
|
||||
}
|
||||
////////////////////////////////////////////////////////
|
||||
// Global shared functionality finished
|
||||
// Now move to per communicator functionality
|
||||
@ -959,7 +959,6 @@ void SharedMemory::SetCommunicator(Grid_MPI_Comm comm)
|
||||
MPI_Allreduce(MPI_IN_PLACE,&wsr,1,MPI_UINT32_T,MPI_SUM,ShmComm);
|
||||
|
||||
ShmCommBufs[r] = GlobalSharedMemory::WorldShmCommBufs[wsr];
|
||||
// std::cerr << " SetCommunicator rank "<<r<<" comm "<<ShmCommBufs[r] <<std::endl;
|
||||
}
|
||||
ShmBufferFreeAll();
|
||||
|
||||
@ -990,7 +989,7 @@ void SharedMemory::SetCommunicator(Grid_MPI_Comm comm)
|
||||
}
|
||||
#endif
|
||||
|
||||
SharedMemoryTest();
|
||||
//SharedMemoryTest();
|
||||
}
|
||||
//////////////////////////////////////////////////////////////////
|
||||
// On node barrier
|
||||
@ -1012,18 +1011,19 @@ void SharedMemory::SharedMemoryTest(void)
|
||||
check[0]=GlobalSharedMemory::WorldNode;
|
||||
check[1]=r;
|
||||
check[2]=magic;
|
||||
acceleratorCopyToDevice(check,ShmCommBufs[r],3*sizeof(uint64_t));
|
||||
GlobalSharedMemory::SharedMemoryCopy( ShmCommBufs[r], check, 3*sizeof(uint64_t));
|
||||
}
|
||||
}
|
||||
ShmBarrier();
|
||||
for(uint64_t r=0;r<ShmSize;r++){
|
||||
acceleratorCopyFromDevice(ShmCommBufs[r],check,3*sizeof(uint64_t));
|
||||
ShmBarrier();
|
||||
GlobalSharedMemory::SharedMemoryCopy(check,ShmCommBufs[r], 3*sizeof(uint64_t));
|
||||
ShmBarrier();
|
||||
assert(check[0]==GlobalSharedMemory::WorldNode);
|
||||
assert(check[1]==r);
|
||||
assert(check[2]==magic);
|
||||
ShmBarrier();
|
||||
}
|
||||
ShmBarrier();
|
||||
std::cout << GridLogDebug << " SharedMemoryTest has passed "<<std::endl;
|
||||
}
|
||||
|
||||
void *SharedMemory::ShmBuffer(int rank)
|
||||
|
@ -126,8 +126,8 @@ template<class vobj> void Cshift_comms(Lattice<vobj> &ret,const Lattice<vobj> &r
|
||||
static deviceVector<vobj> send_buf; send_buf.resize(buffer_size);
|
||||
static deviceVector<vobj> recv_buf; recv_buf.resize(buffer_size);
|
||||
#ifndef ACCELERATOR_AWARE_MPI
|
||||
static hostVector<vobj> hsend_buf; hsend_buf.resize(buffer_size);
|
||||
static hostVector<vobj> hrecv_buf; hrecv_buf.resize(buffer_size);
|
||||
static hostVector<vobj> hsend_buf; hsend_buf.resize(buffer_size);
|
||||
static hostVector<vobj> hrecv_buf; hrecv_buf.resize(buffer_size);
|
||||
#endif
|
||||
|
||||
int cb= (cbmask==0x2)? Odd : Even;
|
||||
@ -244,6 +244,7 @@ template<class vobj> void Cshift_comms_simd(Lattice<vobj> &ret,const Lattice<vo
|
||||
scalar_object * recv_buf_extract_mpi;
|
||||
scalar_object * send_buf_extract_mpi;
|
||||
|
||||
|
||||
for(int s=0;s<Nsimd;s++){
|
||||
send_buf_extract[s].resize(buffer_size);
|
||||
recv_buf_extract[s].resize(buffer_size);
|
||||
|
@ -55,7 +55,7 @@ inline void sliceSumReduction_cub_small(const vobj *Data,
|
||||
d_offsets = static_cast<int*>(acceleratorAllocDevice((rd+1)*sizeof(int)));
|
||||
|
||||
//copy offsets to device
|
||||
acceleratorCopyToDeviceAsynch(&offsets[0],d_offsets,sizeof(int)*(rd+1),computeStream);
|
||||
acceleratorCopyToDeviceAsync(&offsets[0],d_offsets,sizeof(int)*(rd+1),computeStream);
|
||||
|
||||
|
||||
gpuError_t gpuErr = gpucub::DeviceSegmentedReduce::Reduce(temp_storage_array, temp_storage_bytes, rb_p,d_out, rd, d_offsets, d_offsets+1, ::gpucub::Sum(), zero_init, computeStream);
|
||||
@ -88,7 +88,7 @@ inline void sliceSumReduction_cub_small(const vobj *Data,
|
||||
exit(EXIT_FAILURE);
|
||||
}
|
||||
|
||||
acceleratorCopyFromDeviceAsynch(d_out,&lvSum[0],rd*sizeof(vobj),computeStream);
|
||||
acceleratorCopyFromDeviceAsync(d_out,&lvSum[0],rd*sizeof(vobj),computeStream);
|
||||
|
||||
//sync after copy
|
||||
accelerator_barrier();
|
||||
|
@ -485,6 +485,7 @@ public:
|
||||
assert(this->u_comm_offset==this->_unified_buffer_size);
|
||||
accelerator_barrier();
|
||||
#ifdef NVLINK_GET
|
||||
#warning "NVLINK_GET"
|
||||
this->_grid->StencilBarrier(); // He can now get mu local gather, I can get his
|
||||
// Synch shared memory on a single nodes; could use an asynchronous barrier here and defer check
|
||||
// Or issue barrier AFTER the DMA is running
|
||||
|
@ -63,7 +63,7 @@ accelerator_inline void get_stencil(StencilEntry * mem, StencilEntry &chip)
|
||||
} else { \
|
||||
chi = coalescedRead(buf[SE->_offset],lane); \
|
||||
} \
|
||||
acceleratorSynchronise(); \
|
||||
acceleratorSynchronise(); \
|
||||
Impl::multLink(Uchi, U[sU], chi, Dir, SE, st); \
|
||||
Recon(result, Uchi);
|
||||
|
||||
@ -504,7 +504,7 @@ void WilsonKernels<Impl>::DhopKernel(int Opt,StencilImpl &st, DoubledGaugeField
|
||||
autoView(st_v , st,AcceleratorRead);
|
||||
|
||||
if( interior && exterior ) {
|
||||
acceleratorFenceComputeStream();
|
||||
// acceleratorFenceComputeStream();
|
||||
if (Opt == WilsonKernelsStatic::OptGeneric ) { KERNEL_CALL(GenericDhopSite); return;}
|
||||
if (Opt == WilsonKernelsStatic::OptHandUnroll ) { KERNEL_CALL(HandDhopSite); return;}
|
||||
#ifndef GRID_CUDA
|
||||
|
@ -86,8 +86,13 @@ public:
|
||||
assert(ForceE.Checkerboard()==Even);
|
||||
assert(ForceO.Checkerboard()==Odd);
|
||||
|
||||
#if defined(GRID_CUDA) || defined(GRID_HIP) || defined(GRID_SYCL)
|
||||
acceleratorSetCheckerboard(Force,ForceE);
|
||||
acceleratorSetCheckerboard(Force,ForceO);
|
||||
#else
|
||||
setCheckerboard(Force,ForceE);
|
||||
setCheckerboard(Force,ForceO);
|
||||
#endif
|
||||
Force=-Force;
|
||||
|
||||
delete forcecb;
|
||||
@ -130,8 +135,13 @@ public:
|
||||
assert(ForceE.Checkerboard()==Even);
|
||||
assert(ForceO.Checkerboard()==Odd);
|
||||
|
||||
#if defined(GRID_CUDA) || defined(GRID_HIP) || defined(GRID_SYCL)
|
||||
acceleratorSetCheckerboard(Force,ForceE);
|
||||
acceleratorSetCheckerboard(Force,ForceO);
|
||||
#else
|
||||
setCheckerboard(Force,ForceE);
|
||||
setCheckerboard(Force,ForceO);
|
||||
#endif
|
||||
Force=-Force;
|
||||
|
||||
delete forcecb;
|
||||
|
@ -446,7 +446,6 @@ public:
|
||||
Communicate();
|
||||
CommsMergeSHM(compress);
|
||||
CommsMerge(compress);
|
||||
accelerator_barrier();
|
||||
}
|
||||
|
||||
template<class compressor> int HaloGatherDir(const Lattice<vobj> &source,compressor &compress,int point,int & face_idx)
|
||||
@ -519,6 +518,7 @@ public:
|
||||
}
|
||||
accelerator_barrier(); // All my local gathers are complete
|
||||
#ifdef NVLINK_GET
|
||||
#warning "NVLINK_GET"
|
||||
_grid->StencilBarrier(); // He can now get mu local gather, I can get his
|
||||
// Synch shared memory on a single nodes; could use an asynchronous barrier here and defer check
|
||||
// Or issue barrier AFTER the DMA is running
|
||||
@ -690,7 +690,6 @@ public:
|
||||
}
|
||||
}
|
||||
}
|
||||
// std::cout << "BuildSurfaceList size is "<<surface_list_size<<std::endl;
|
||||
surface_list.resize(surface_list_size);
|
||||
std::vector<int> surface_list_host(surface_list_size);
|
||||
int32_t ss=0;
|
||||
@ -710,7 +709,7 @@ public:
|
||||
}
|
||||
}
|
||||
acceleratorCopyToDevice(&surface_list_host[0],&surface_list[0],surface_list_size*sizeof(int));
|
||||
// std::cout << GridLogMessage<<"BuildSurfaceList size is "<<surface_list_size<<std::endl;
|
||||
std::cout << GridLogMessage<<"BuildSurfaceList size is "<<surface_list_size<<std::endl;
|
||||
}
|
||||
/// Introduce a block structure and switch off comms on boundaries
|
||||
void DirichletBlock(const Coordinate &dirichlet_block)
|
||||
@ -802,8 +801,8 @@ public:
|
||||
this->_entries_host_p = &_entries[0];
|
||||
this->_entries_p = &_entries_device[0];
|
||||
|
||||
// std::cout << GridLogMessage << " Stencil object allocated for "<<std::dec<<this->_osites
|
||||
// <<" sites table "<<std::hex<<this->_entries_p<< " GridPtr "<<_grid<<std::dec<<std::endl;
|
||||
std::cout << GridLogMessage << " Stencil object allocated for "<<std::dec<<this->_osites
|
||||
<<" sites table "<<std::hex<<this->_entries_p<< " GridPtr "<<_grid<<std::dec<<std::endl;
|
||||
|
||||
for(int ii=0;ii<npoints;ii++){
|
||||
|
||||
|
@ -242,33 +242,19 @@ inline void *acceleratorAllocDevice(size_t bytes)
|
||||
return ptr;
|
||||
};
|
||||
|
||||
typedef int acceleratorEvent_t;
|
||||
|
||||
inline void acceleratorFreeShared(void *ptr){ cudaFree(ptr);};
|
||||
inline void acceleratorFreeDevice(void *ptr){ cudaFree(ptr);};
|
||||
inline void acceleratorFreeHost(void *ptr){ cudaFree(ptr);};
|
||||
inline void acceleratorCopyToDevice(const void *from,void *to,size_t bytes) { cudaMemcpy(to,from,bytes, cudaMemcpyHostToDevice);}
|
||||
inline void acceleratorCopyFromDevice(const void *from,void *to,size_t bytes){ cudaMemcpy(to,from,bytes, cudaMemcpyDeviceToHost);}
|
||||
inline void acceleratorCopyToDevice(void *from,void *to,size_t bytes) { cudaMemcpy(to,from,bytes, cudaMemcpyHostToDevice);}
|
||||
inline void acceleratorCopyFromDevice(void *from,void *to,size_t bytes){ cudaMemcpy(to,from,bytes, cudaMemcpyDeviceToHost);}
|
||||
inline void acceleratorCopyToDeviceAsync(void *from, void *to, size_t bytes, cudaStream_t stream = copyStream) { cudaMemcpyAsync(to,from,bytes, cudaMemcpyHostToDevice, stream);}
|
||||
inline void acceleratorCopyFromDeviceAsync(void *from, void *to, size_t bytes, cudaStream_t stream = copyStream) { cudaMemcpyAsync(to,from,bytes, cudaMemcpyDeviceToHost, stream);}
|
||||
inline void acceleratorMemSet(void *base,int value,size_t bytes) { cudaMemset(base,value,bytes);}
|
||||
inline acceleratorEvent_t acceleratorCopyToDeviceAsynch(void *from, void *to, size_t bytes, cudaStream_t stream = copyStream) {
|
||||
acceleratorCopyToDevice(to,from,bytes, cudaMemcpyHostToDevice);
|
||||
return 0;
|
||||
}
|
||||
inline acceleratorEvent_t acceleratorCopyFromDeviceAsynch(void *from, void *to, size_t bytes, cudaStream_t stream = copyStream) {
|
||||
acceleratorCopyFromDevice(from,to,bytes);
|
||||
return 0;
|
||||
}
|
||||
inline acceleratorEvent_t acceleratorCopyDeviceToDeviceAsynch(void *from,void *to,size_t bytes) // Asynch
|
||||
inline void acceleratorCopyDeviceToDeviceAsynch(void *from,void *to,size_t bytes) // Asynch
|
||||
{
|
||||
cudaMemcpyAsync(to,from,bytes, cudaMemcpyDeviceToDevice,copyStream);
|
||||
return 0;
|
||||
}
|
||||
inline void acceleratorCopySynchronise(void) { cudaStreamSynchronize(copyStream); };
|
||||
inline void acceleratorEventWait(acceleratorEvent_t ev)
|
||||
{
|
||||
//auto discard=cudaStreamSynchronize(ev);
|
||||
}
|
||||
inline int acceleratorEventIsComplete(acceleratorEvent_t ev){ acceleratorEventWait(ev) ; return 1;}
|
||||
|
||||
|
||||
inline int acceleratorIsCommunicable(void *ptr)
|
||||
@ -377,8 +363,8 @@ inline acceleratorEvent_t acceleratorCopyDeviceToDeviceAsynch(void *from,void *t
|
||||
inline acceleratorEvent_t acceleratorCopyToDeviceAsynch(void *from,void *to,size_t bytes) { return theCopyAccelerator->memcpy(to,from,bytes); }
|
||||
inline acceleratorEvent_t acceleratorCopyFromDeviceAsynch(void *from,void *to,size_t bytes) { return theCopyAccelerator->memcpy(to,from,bytes); }
|
||||
|
||||
inline void acceleratorCopyToDevice(const void *from,void *to,size_t bytes) { theCopyAccelerator->memcpy(to,from,bytes); theCopyAccelerator->wait();}
|
||||
inline void acceleratorCopyFromDevice(const void *from,void *to,size_t bytes){ theCopyAccelerator->memcpy(to,from,bytes); theCopyAccelerator->wait();}
|
||||
inline void acceleratorCopyToDevice(void *from,void *to,size_t bytes) { theCopyAccelerator->memcpy(to,from,bytes); theCopyAccelerator->wait();}
|
||||
inline void acceleratorCopyFromDevice(void *from,void *to,size_t bytes){ theCopyAccelerator->memcpy(to,from,bytes); theCopyAccelerator->wait();}
|
||||
inline void acceleratorMemSet(void *base,int value,size_t bytes) { theCopyAccelerator->memset(base,value,bytes); theCopyAccelerator->wait();}
|
||||
|
||||
inline int acceleratorIsCommunicable(void *ptr)
|
||||
@ -492,7 +478,7 @@ void LambdaApply(uint64_t numx, uint64_t numy, uint64_t numz, lambda Lambda)
|
||||
inline void *acceleratorAllocHost(size_t bytes)
|
||||
{
|
||||
void *ptr=NULL;
|
||||
auto err = hipHostMalloc((void **)&ptr,bytes);
|
||||
auto err = hipMallocHost((void **)&ptr,bytes);
|
||||
if( err != hipSuccess ) {
|
||||
ptr = (void *) NULL;
|
||||
fprintf(stderr," hipMallocManaged failed for %ld %s \n",bytes,hipGetErrorString(err)); fflush(stderr);
|
||||
@ -525,35 +511,23 @@ inline void *acceleratorAllocDevice(size_t bytes)
|
||||
inline void acceleratorFreeHost(void *ptr){ auto discard=hipFree(ptr);};
|
||||
inline void acceleratorFreeShared(void *ptr){ auto discard=hipFree(ptr);};
|
||||
inline void acceleratorFreeDevice(void *ptr){ auto discard=hipFree(ptr);};
|
||||
inline void acceleratorCopyToDevice(const void *from,void *to,size_t bytes) { auto discard=hipMemcpy(to,from,bytes, hipMemcpyHostToDevice);}
|
||||
inline void acceleratorCopyFromDevice(const void *from,void *to,size_t bytes){ auto discard=hipMemcpy(to,from,bytes, hipMemcpyDeviceToHost);}
|
||||
inline void acceleratorCopyToDevice(void *from,void *to,size_t bytes) { auto discard=hipMemcpy(to,from,bytes, hipMemcpyHostToDevice);}
|
||||
inline void acceleratorCopyFromDevice(void *from,void *to,size_t bytes){ auto discard=hipMemcpy(to,from,bytes, hipMemcpyDeviceToHost);}
|
||||
|
||||
inline void acceleratorMemSet(void *base,int value,size_t bytes) { auto discard=hipMemset(base,value,bytes);}
|
||||
|
||||
typedef int acceleratorEvent_t;
|
||||
|
||||
inline acceleratorEvent_t acceleratorCopyDeviceToDeviceAsynch(void *from,void *to,size_t bytes) // Asynch
|
||||
inline void acceleratorCopyDeviceToDeviceAsynch(void *from,void *to,size_t bytes) // Asynch
|
||||
{
|
||||
auto discard=hipMemcpyDtoDAsync(to,from,bytes, copyStream);
|
||||
return 0;
|
||||
}
|
||||
inline acceleratorEvent_t acceleratorCopyToDeviceAsynch(void *from, void *to, size_t bytes, hipStream_t stream = copyStream) {
|
||||
acceleratorCopyToDevice(from,to,bytes);
|
||||
return 0;
|
||||
inline void acceleratorCopyToDeviceAsync(void *from, void *to, size_t bytes, hipStream_t stream = copyStream) {
|
||||
auto r = hipMemcpyAsync(to,from,bytes, hipMemcpyHostToDevice, stream);
|
||||
}
|
||||
inline acceleratorEvent_t acceleratorCopyFromDeviceAsynch(void *from, void *to, size_t bytes, hipStream_t stream = copyStream) {
|
||||
acceleratorCopyFromDevice(from,to,bytes);
|
||||
return 0;
|
||||
inline void acceleratorCopyFromDeviceAsync(void *from, void *to, size_t bytes, hipStream_t stream = copyStream) {
|
||||
auto r = hipMemcpyAsync(to,from,bytes, hipMemcpyDeviceToHost, stream);
|
||||
}
|
||||
inline void acceleratorCopySynchronise(void) { auto discard=hipStreamSynchronize(copyStream); };
|
||||
|
||||
inline void acceleratorEventWait(acceleratorEvent_t ev)
|
||||
{
|
||||
// auto discard=hipStreamSynchronize(ev);
|
||||
}
|
||||
inline int acceleratorEventIsComplete(acceleratorEvent_t ev){ acceleratorEventWait(ev) ; return 1;}
|
||||
|
||||
|
||||
#endif
|
||||
|
||||
inline void acceleratorPin(void *ptr,unsigned long bytes)
|
||||
@ -590,8 +564,6 @@ inline void acceleratorPin(void *ptr,unsigned long bytes)
|
||||
|
||||
#undef GRID_SIMT
|
||||
|
||||
typedef int acceleratorEvent_t;
|
||||
|
||||
inline void acceleratorMem(void)
|
||||
{
|
||||
/*
|
||||
@ -611,12 +583,9 @@ inline void acceleratorMem(void)
|
||||
|
||||
accelerator_inline int acceleratorSIMTlane(int Nsimd) { return 0; } // CUDA specific
|
||||
|
||||
inline acceleratorEvent_t acceleratorCopyToDeviceAsynch(void *from,void *to,size_t bytes) { acceleratorCopyToDevice(from,to,bytes); return 0; }
|
||||
inline acceleratorEvent_t acceleratorCopyFromDeviceAsynch(void *from,void *to,size_t bytes) { acceleratorCopyFromDevice(from,to,bytes); return 0; }
|
||||
inline void acceleratorEventWait(acceleratorEvent_t ev){}
|
||||
inline int acceleratorEventIsComplete(acceleratorEvent_t ev){ acceleratorEventWait(ev); return 1;}
|
||||
inline acceleratorEvent_t acceleratorCopyDeviceToDeviceAsynch(void *from,void *to,size_t bytes) { thread_bcopy(from,to,bytes); return 0;}
|
||||
|
||||
inline void acceleratorCopyToDevice(void *from,void *to,size_t bytes) { thread_bcopy(from,to,bytes); }
|
||||
inline void acceleratorCopyFromDevice(void *from,void *to,size_t bytes){ thread_bcopy(from,to,bytes);}
|
||||
inline void acceleratorCopyDeviceToDeviceAsynch(void *from,void *to,size_t bytes) { thread_bcopy(from,to,bytes);}
|
||||
inline void acceleratorCopySynchronise(void) {};
|
||||
|
||||
inline int acceleratorIsCommunicable(void *ptr){ return 1; }
|
||||
@ -705,9 +674,9 @@ inline void acceleratorCopyDeviceToDevice(void *from,void *to,size_t bytes)
|
||||
acceleratorCopySynchronise();
|
||||
}
|
||||
|
||||
template<class T> void acceleratorPut(T& dev,const T&host)
|
||||
template<class T> void acceleratorPut(T& dev,T&host)
|
||||
{
|
||||
acceleratorCopyToDevice((void *)&host,&dev,sizeof(T));
|
||||
acceleratorCopyToDevice(&host,&dev,sizeof(T));
|
||||
}
|
||||
template<class T> T acceleratorGet(T& dev)
|
||||
{
|
||||
|
@ -73,9 +73,9 @@ Author: paboyle <paboyle@ph.ed.ac.uk>
|
||||
#define thread_critical DO_PRAGMA(omp critical)
|
||||
|
||||
#ifdef GRID_OMP
|
||||
inline void thread_bcopy(const void *from, void *to,size_t bytes)
|
||||
inline void thread_bcopy(void *from, void *to,size_t bytes)
|
||||
{
|
||||
const uint64_t *ufrom = (const uint64_t *)from;
|
||||
uint64_t *ufrom = (uint64_t *)from;
|
||||
uint64_t *uto = (uint64_t *)to;
|
||||
assert(bytes%8==0);
|
||||
uint64_t words=bytes/8;
|
||||
@ -84,7 +84,7 @@ inline void thread_bcopy(const void *from, void *to,size_t bytes)
|
||||
});
|
||||
}
|
||||
#else
|
||||
inline void thread_bcopy(const void *from, void *to,size_t bytes)
|
||||
inline void thread_bcopy(void *from, void *to,size_t bytes)
|
||||
{
|
||||
bcopy(from,to,bytes);
|
||||
}
|
||||
|
@ -509,14 +509,7 @@ void Grid_init(int *argc,char ***argv)
|
||||
Grid_default_latt,
|
||||
Grid_default_mpi);
|
||||
|
||||
if( GridCmdOptionExists(*argv,*argv+*argc,"--flightrecorder") ){
|
||||
std::cout << GridLogMessage <<" Enabling flight recorder " <<std::endl;
|
||||
FlightRecorder::SetLoggingMode(FlightRecorder::LoggingModeRecord);
|
||||
FlightRecorder::PrintEntireLog = 1;
|
||||
FlightRecorder::ChecksumComms = 1;
|
||||
FlightRecorder::ChecksumCommsSend=1;
|
||||
}
|
||||
|
||||
|
||||
if( GridCmdOptionExists(*argv,*argv+*argc,"--decomposition") ){
|
||||
std::cout<<GridLogMessage<<"Grid Default Decomposition patterns\n";
|
||||
std::cout<<GridLogMessage<<"\tOpenMP threads : "<<GridThread::GetThreads()<<std::endl;
|
||||
@ -658,4 +651,3 @@ void Grid_debug_handler_init(void)
|
||||
}
|
||||
|
||||
NAMESPACE_END(Grid);
|
||||
|
||||
|
@ -50,7 +50,7 @@ namespace Grid{
|
||||
int64_t index64;
|
||||
IndexFromCoorReversed(coor,index64,dims);
|
||||
if ( index64>=2*1024*1024*1024LL ){
|
||||
// std::cout << " IndexFromCoorReversed " << coor<<" index " << index64<< " dims "<<dims<<std::endl;
|
||||
std::cout << " IndexFromCoorReversed " << coor<<" index " << index64<< " dims "<<dims<<std::endl;
|
||||
}
|
||||
assert(index64<2*1024*1024*1024LL);
|
||||
index = (int) index64;
|
||||
|
@ -492,18 +492,17 @@ public:
|
||||
}
|
||||
FGrid->Barrier();
|
||||
double t1=usecond();
|
||||
uint64_t no = 50;
|
||||
uint64_t ni = 100;
|
||||
uint64_t ncall = 500;
|
||||
|
||||
FGrid->Broadcast(0,&ncall,sizeof(ncall));
|
||||
|
||||
// std::cout << GridLogMessage << " Estimate " << ncall << " calls per second"<<std::endl;
|
||||
|
||||
time_statistics timestat;
|
||||
std::vector<double> t_time(no);
|
||||
for(uint64_t i=0;i<no;i++){
|
||||
std::vector<double> t_time(ncall);
|
||||
for(uint64_t i=0;i<ncall;i++){
|
||||
t0=usecond();
|
||||
for(uint64_t j=0;j<ni;j++){
|
||||
Dw.DhopEO(src_o,r_e,DaggerNo);
|
||||
}
|
||||
Dw.DhopEO(src_o,r_e,DaggerNo);
|
||||
t1=usecond();
|
||||
t_time[i] = t1-t0;
|
||||
}
|
||||
@ -521,11 +520,11 @@ public:
|
||||
double mf_hi, mf_lo, mf_err;
|
||||
|
||||
timestat.statistics(t_time);
|
||||
mf_hi = flops/timestat.min*ni;
|
||||
mf_lo = flops/timestat.max*ni;
|
||||
mf_hi = flops/timestat.min;
|
||||
mf_lo = flops/timestat.max;
|
||||
mf_err= flops/timestat.min * timestat.err/timestat.mean;
|
||||
|
||||
mflops = flops/timestat.mean*ni;
|
||||
mflops = flops/timestat.mean;
|
||||
mflops_all.push_back(mflops);
|
||||
if ( mflops_best == 0 ) mflops_best = mflops;
|
||||
if ( mflops_worst== 0 ) mflops_worst= mflops;
|
||||
@ -536,7 +535,6 @@ public:
|
||||
std::cout<<GridLogMessage << std::fixed << std::setprecision(1)<<"Deo mflop/s = "<< mflops << " ("<<mf_err<<") " << mf_lo<<"-"<<mf_hi <<std::endl;
|
||||
std::cout<<GridLogMessage << std::fixed << std::setprecision(1)<<"Deo mflop/s per rank "<< mflops/NP<<std::endl;
|
||||
std::cout<<GridLogMessage << std::fixed << std::setprecision(1)<<"Deo mflop/s per node "<< mflops/NN<<std::endl;
|
||||
std::cout<<GridLogMessage << std::fixed << std::setprecision(1)<<"Deo us per call "<< timestat.mean/ni<<std::endl;
|
||||
|
||||
}
|
||||
|
||||
@ -656,19 +654,17 @@ public:
|
||||
}
|
||||
FGrid->Barrier();
|
||||
double t1=usecond();
|
||||
uint64_t ncall = 500;
|
||||
|
||||
uint64_t no = 50;
|
||||
uint64_t ni = 100;
|
||||
FGrid->Broadcast(0,&ncall,sizeof(ncall));
|
||||
|
||||
// std::cout << GridLogMessage << " Estimate " << ncall << " calls per second"<<std::endl;
|
||||
|
||||
time_statistics timestat;
|
||||
std::vector<double> t_time(no);
|
||||
for(uint64_t i=0;i<no;i++){
|
||||
std::vector<double> t_time(ncall);
|
||||
for(uint64_t i=0;i<ncall;i++){
|
||||
t0=usecond();
|
||||
for(uint64_t j=0;j<ni;j++){
|
||||
Ds.DhopEO(src_o,r_e,DaggerNo);
|
||||
}
|
||||
Ds.DhopEO(src_o,r_e,DaggerNo);
|
||||
t1=usecond();
|
||||
t_time[i] = t1-t0;
|
||||
}
|
||||
@ -679,11 +675,11 @@ public:
|
||||
double mf_hi, mf_lo, mf_err;
|
||||
|
||||
timestat.statistics(t_time);
|
||||
mf_hi = flops/timestat.min*ni;
|
||||
mf_lo = flops/timestat.max*ni;
|
||||
mf_hi = flops/timestat.min;
|
||||
mf_lo = flops/timestat.max;
|
||||
mf_err= flops/timestat.min * timestat.err/timestat.mean;
|
||||
|
||||
mflops = flops/timestat.mean*ni;
|
||||
mflops = flops/timestat.mean;
|
||||
mflops_all.push_back(mflops);
|
||||
if ( mflops_best == 0 ) mflops_best = mflops;
|
||||
if ( mflops_worst== 0 ) mflops_worst= mflops;
|
||||
@ -693,7 +689,6 @@ public:
|
||||
std::cout<<GridLogMessage << std::fixed << std::setprecision(1)<<"Deo mflop/s = "<< mflops << " ("<<mf_err<<") " << mf_lo<<"-"<<mf_hi <<std::endl;
|
||||
std::cout<<GridLogMessage << std::fixed << std::setprecision(1)<<"Deo mflop/s per rank "<< mflops/NP<<std::endl;
|
||||
std::cout<<GridLogMessage << std::fixed << std::setprecision(1)<<"Deo mflop/s per node "<< mflops/NN<<std::endl;
|
||||
std::cout<<GridLogMessage << std::fixed << std::setprecision(1)<<"Deo us per call "<< timestat.mean/ni<<std::endl;
|
||||
|
||||
}
|
||||
|
||||
@ -797,18 +792,19 @@ public:
|
||||
Dc.M(src,r);
|
||||
}
|
||||
FGrid->Barrier();
|
||||
uint64_t ni = 100;
|
||||
uint64_t no = 50;
|
||||
double t1=usecond();
|
||||
uint64_t ncall = 500;
|
||||
|
||||
FGrid->Broadcast(0,&ncall,sizeof(ncall));
|
||||
|
||||
// std::cout << GridLogMessage << " Estimate " << ncall << " calls per second"<<std::endl;
|
||||
|
||||
time_statistics timestat;
|
||||
std::vector<double> t_time(no);
|
||||
for(uint64_t i=0;i<no;i++){
|
||||
double t0=usecond();
|
||||
for(uint64_t j=0;j<ni;j++){
|
||||
Dc.M(src,r);
|
||||
}
|
||||
double t1=usecond();
|
||||
std::vector<double> t_time(ncall);
|
||||
for(uint64_t i=0;i<ncall;i++){
|
||||
t0=usecond();
|
||||
Dc.M(src,r);
|
||||
t1=usecond();
|
||||
t_time[i] = t1-t0;
|
||||
}
|
||||
FGrid->Barrier();
|
||||
@ -818,21 +814,20 @@ public:
|
||||
double mf_hi, mf_lo, mf_err;
|
||||
|
||||
timestat.statistics(t_time);
|
||||
mf_hi = flops/timestat.min*ni;
|
||||
mf_lo = flops/timestat.max*ni;
|
||||
mf_hi = flops/timestat.min;
|
||||
mf_lo = flops/timestat.max;
|
||||
mf_err= flops/timestat.min * timestat.err/timestat.mean;
|
||||
|
||||
mflops = flops/timestat.mean*ni;
|
||||
mflops = flops/timestat.mean;
|
||||
mflops_all.push_back(mflops);
|
||||
if ( mflops_best == 0 ) mflops_best = mflops;
|
||||
if ( mflops_worst== 0 ) mflops_worst= mflops;
|
||||
if ( mflops>mflops_best ) mflops_best = mflops;
|
||||
if ( mflops<mflops_worst) mflops_worst= mflops;
|
||||
|
||||
std::cout<<GridLogMessage << std::fixed << std::setprecision(1)<<"Dclov mflop/s = "<< mflops << " ("<<mf_err<<") " << mf_lo<<"-"<<mf_hi <<" "<<timestat.mean<<" us"<<std::endl;
|
||||
std::cout<<GridLogMessage << std::fixed << std::setprecision(1)<<"Dclov mflop/s = "<< mflops << " ("<<mf_err<<") " << mf_lo<<"-"<<mf_hi <<std::endl;
|
||||
std::cout<<GridLogMessage << std::fixed << std::setprecision(1)<<"Dclov mflop/s per rank "<< mflops/NP<<std::endl;
|
||||
std::cout<<GridLogMessage << std::fixed << std::setprecision(1)<<"Dclov mflop/s per node "<< mflops/NN<<std::endl;
|
||||
std::cout<<GridLogMessage << std::fixed << std::setprecision(1)<<"Dclov us per call "<< timestat.mean/ni<<std::endl;
|
||||
|
||||
}
|
||||
|
||||
@ -877,7 +872,7 @@ int main (int argc, char ** argv)
|
||||
int do_dslash=1;
|
||||
|
||||
int sel=4;
|
||||
std::vector<int> L_list({8,12,16,24,32});
|
||||
std::vector<int> L_list({8,12,16,24});
|
||||
int selm1=sel-1;
|
||||
|
||||
std::vector<double> clover;
|
||||
|
@ -1,19 +1,18 @@
|
||||
#Ahead of time compile for PVC
|
||||
|
||||
export LDFLAGS="-fiopenmp -fsycl -fsycl-device-code-split=per_kernel -fsycl-targets=spir64_gen -Xs -device -Xs pvc -fsycl-device-lib=all -lze_loader -L${MKLROOT}/lib -qmkl=parallel -fsycl -lsycl -lnuma -L/opt/aurora/24.180.3/spack/unified/0.8.0/install/linux-sles15-x86_64/oneapi-2024.07.30.002/numactl-2.0.14-7v6edad/lib -fPIC -fsycl-max-parallel-link-jobs=16 -fno-sycl-rdc"
|
||||
export CXXFLAGS="-O3 -fiopenmp -fsycl-unnamed-lambda -fsycl -Wno-tautological-compare -qmkl=parallel -fsycl -fno-exceptions -I/opt/aurora/24.180.3/spack/unified/0.8.0/install/linux-sles15-x86_64/oneapi-2024.07.30.002/numactl-2.0.14-7v6edad/include/ -fPIC"
|
||||
export LDFLAGS="-fiopenmp -fsycl -fsycl-device-code-split=per_kernel -fsycl-targets=spir64_gen -Xs -device -Xs pvc -fsycl-device-lib=all -lze_loader -L${MKLROOT}/lib -qmkl=parallel -fsycl -lsycl -lnuma -L/opt/aurora/24.180.3/spack/unified/0.8.0/install/linux-sles15-x86_64/oneapi-2024.07.30.002/numactl-2.0.14-7v6edad/lib"
|
||||
export CXXFLAGS="-O3 -fiopenmp -fsycl-unnamed-lambda -fsycl -Wno-tautological-compare -qmkl=parallel -fsycl -fno-exceptions -I/opt/aurora/24.180.3/spack/unified/0.8.0/install/linux-sles15-x86_64/oneapi-2024.07.30.002/numactl-2.0.14-7v6edad/include/"
|
||||
|
||||
#JIT compile
|
||||
#export LDFLAGS="-fiopenmp -fsycl -fsycl-device-code-split=per_kernel -fsycl-device-lib=all -lze_loader -L${MKLROOT}/lib -qmkl=parallel -fsycl -lsycl "
|
||||
#export CXXFLAGS="-O3 -fiopenmp -fsycl-unnamed-lambda -fsycl -Wno-tautological-compare -qmkl=parallel -fsycl -fno-exceptions "
|
||||
|
||||
../configure \
|
||||
../../configure \
|
||||
--enable-simd=GPU \
|
||||
--enable-reduction=grid \
|
||||
--enable-gen-simd-width=64 \
|
||||
--enable-comms=mpi-auto \
|
||||
--enable-debug \
|
||||
--prefix $HOME/gpt-install \
|
||||
--disable-gparity \
|
||||
--disable-fermion-reps \
|
||||
--with-lime=$CLIME \
|
||||
|
@ -1,22 +0,0 @@
|
||||
CLIME=`spack find --paths c-lime@2-3-9 | grep c-lime| cut -c 15-`
|
||||
../../configure --enable-comms=mpi-auto \
|
||||
--with-lime=$CLIME \
|
||||
--enable-unified=no \
|
||||
--enable-shm=nvlink \
|
||||
--enable-tracing=none \
|
||||
--enable-accelerator=hip \
|
||||
--enable-gen-simd-width=64 \
|
||||
--disable-gparity \
|
||||
--disable-fermion-reps \
|
||||
--enable-simd=GPU \
|
||||
--with-gmp=$OLCF_GMP_ROOT \
|
||||
--with-fftw=$FFTW_DIR/.. \
|
||||
--with-mpfr=/opt/cray/pe/gcc/mpfr/3.1.4/ \
|
||||
--disable-fermion-reps \
|
||||
CXX=hipcc MPICXX=mpicxx \
|
||||
CXXFLAGS="-fPIC -I${ROCM_PATH}/include/ -I${MPICH_DIR}/include -L/lib64 " \
|
||||
LDFLAGS="-L/lib64 -L${ROCM_PATH}/lib -L${MPICH_DIR}/lib -lmpi -L${CRAY_MPICH_ROOTDIR}/gtl/lib -lmpi_gtl_hsa -lhipblas -lrocblas"
|
||||
|
||||
|
||||
|
||||
|
@ -1,16 +0,0 @@
|
||||
|
||||
echo spack
|
||||
. /autofs/nccs-svm1_home1/paboyle/Crusher/Grid/spack/share/spack/setup-env.sh
|
||||
|
||||
#module load cce/15.0.1
|
||||
|
||||
module load rocm/6.3.1
|
||||
module load cray-fftw
|
||||
module load craype-accel-amd-gfx90a
|
||||
export LD_LIBRARY_PATH=/opt/gcc/mpfr/3.1.4/lib:$LD_LIBRARY_PATH
|
||||
|
||||
#Ugly hacks to get down level software working on current system
|
||||
#export LD_LIBRARY_PATH=/opt/cray/libfabric/1.20.1/lib64/:$LD_LIBRARY_PATH
|
||||
#export LD_LIBRARY_PATH=`pwd`/:$LD_LIBRARY_PATH
|
||||
#ln -s /opt/rocm-6.0.0/lib/libamdhip64.so.6 .
|
||||
|
@ -30,10 +30,14 @@ source ${root}/sourceme.sh
|
||||
|
||||
export OMP_NUM_THREADS=7
|
||||
export MPICH_GPU_SUPPORT_ENABLED=1
|
||||
#export MPICH_SMP_SINGLE_COPY_MODE=XPMEM
|
||||
#64.64.32.96
|
||||
for vol in 64.64.32.64
|
||||
export MPICH_SMP_SINGLE_COPY_MODE=XPMEM
|
||||
|
||||
for vol in 32.32.32.64
|
||||
do
|
||||
srun ./select_gpu ./Benchmark_dwf_fp32 --mpi 2.2.2.2 --accelerator-threads 8 --comms-overlap --shm 2048 --shm-mpi 0 --grid $vol -Ls 16
|
||||
srun ./select_gpu ./Benchmark_dwf_fp32 --mpi 2.2.2.2 --accelerator-threads 8 --comms-overlap --shm 2048 --shm-mpi 0 --grid $vol > log.shm0.ov.$vol
|
||||
srun ./select_gpu ./Benchmark_dwf_fp32 --mpi 2.2.2.2 --accelerator-threads 8 --comms-overlap --shm 2048 --shm-mpi 1 --grid $vol > log.shm1.ov.$vol
|
||||
|
||||
srun ./select_gpu ./Benchmark_dwf_fp32 --mpi 2.2.2.2 --accelerator-threads 8 --comms-sequential --shm 2048 --shm-mpi 0 --grid $vol > log.shm0.seq.$vol
|
||||
srun ./select_gpu ./Benchmark_dwf_fp32 --mpi 2.2.2.2 --accelerator-threads 8 --comms-sequential --shm 2048 --shm-mpi 1 --grid $vol > log.shm1.seq.$vol
|
||||
done
|
||||
|
||||
|
@ -3,19 +3,20 @@ CLIME=`spack find --paths c-lime@2-3-9 | grep c-lime| cut -c 15-`
|
||||
--with-lime=$CLIME \
|
||||
--enable-unified=no \
|
||||
--enable-shm=nvlink \
|
||||
--enable-tracing=none \
|
||||
--enable-tracing=timer \
|
||||
--enable-accelerator=hip \
|
||||
--enable-gen-simd-width=64 \
|
||||
--disable-gparity \
|
||||
--disable-fermion-reps \
|
||||
--enable-simd=GPU \
|
||||
--enable-accelerator-cshift \
|
||||
--with-gmp=$OLCF_GMP_ROOT \
|
||||
--with-fftw=$FFTW_DIR/.. \
|
||||
--with-mpfr=/opt/cray/pe/gcc/mpfr/3.1.4/ \
|
||||
--disable-fermion-reps \
|
||||
CXX=hipcc MPICXX=mpicxx \
|
||||
CXXFLAGS="-fPIC -I${ROCM_PATH}/include/ -I${MPICH_DIR}/include -L/lib64 " \
|
||||
LDFLAGS="-L/lib64 -L${ROCM_PATH}/lib -L${MPICH_DIR}/lib -lmpi -L${CRAY_MPICH_ROOTDIR}/gtl/lib -lmpi_gtl_hsa -lhipblas -lrocblas"
|
||||
CXXFLAGS="-fPIC -I{$ROCM_PATH}/include/ -I${MPICH_DIR}/include -L/lib64 " \
|
||||
LDFLAGS="-L/lib64 -L${MPICH_DIR}/lib -lmpi -L${CRAY_MPICH_ROOTDIR}/gtl/lib -lmpi_gtl_hsa -lamdhip64 -lhipblas -lrocblas"
|
||||
|
||||
|
||||
|
||||
|
@ -1,25 +1,12 @@
|
||||
|
||||
echo spack
|
||||
. /autofs/nccs-svm1_home1/paboyle/Crusher/Grid/spack/share/spack/setup-env.sh
|
||||
|
||||
module load cce/15.0.1
|
||||
module load rocm/5.3.0
|
||||
spack load c-lime
|
||||
module load emacs
|
||||
module load PrgEnv-gnu
|
||||
module load rocm/6.0.0
|
||||
module load cray-mpich
|
||||
module load gmp
|
||||
module load cray-fftw
|
||||
module load craype-accel-amd-gfx90a
|
||||
|
||||
#Ugly hacks to get down level software working on current system
|
||||
export LD_LIBRARY_PATH=/opt/cray/libfabric/1.20.1/lib64/:$LD_LIBRARY_PATH
|
||||
export LD_LIBRARY_PATH=/opt/gcc/mpfr/3.1.4/lib:$LD_LIBRARY_PATH
|
||||
export LD_LIBRARY_PATH=`pwd`/:$LD_LIBRARY_PATH
|
||||
ln -s /opt/rocm-6.0.0/lib/libamdhip64.so.6 .
|
||||
|
||||
#echo spack load c-lime
|
||||
#spack load c-lime
|
||||
#module load emacs
|
||||
##module load PrgEnv-gnu
|
||||
##module load cray-mpich
|
||||
##module load cray-fftw
|
||||
##module load craype-accel-amd-gfx90a
|
||||
##export LD_LIBRARY_PATH=/opt/gcc/mpfr/3.1.4/lib:$LD_LIBRARY_PATH
|
||||
#Hack for lib
|
||||
##export LD_LIBRARY_PATH=`pwd`/:$LD_LIBRARY_PATH
|
||||
#export LD_LIBRARY_PATH=`pwd`:$LD_LIBRARY_PATH
|
||||
|
@ -1,206 +0,0 @@
|
||||
The purpose of this file is to collate all non-obvious known magic shell variables
|
||||
and compiler flags required for either correctness or performance on various systems.
|
||||
|
||||
A repository of work-arounds.
|
||||
|
||||
Contents:
|
||||
1. Interconnect + MPI
|
||||
2. Compilation
|
||||
3. Profiling
|
||||
|
||||
************************
|
||||
* 1. INTERCONNECT + MPI
|
||||
************************
|
||||
|
||||
--------------------------------------------------------------------
|
||||
MPI2-IO correctness: force OpenMPI to use the MPICH romio implementation for parallel I/O
|
||||
--------------------------------------------------------------------
|
||||
export OMPI_MCA_io=romio321
|
||||
|
||||
--------------------------------------
|
||||
ROMIO fail with > 2GB per node read (32 bit issue)
|
||||
--------------------------------------
|
||||
|
||||
Use later MPICH
|
||||
|
||||
https://github.com/paboyle/Grid/issues/381
|
||||
|
||||
https://github.com/pmodels/mpich/commit/3a479ab0
|
||||
|
||||
--------------------------------------------------------------------
|
||||
Slingshot: Frontier and Perlmutter libfabric slow down
|
||||
and physical memory fragmentation
|
||||
--------------------------------------------------------------------
|
||||
export FI_MR_CACHE_MONITOR=disabled
|
||||
or
|
||||
export FI_MR_CACHE_MONITOR=kdreg2
|
||||
|
||||
--------------------------------------------------------------------
|
||||
Perlmutter
|
||||
--------------------------------------------------------------------
|
||||
|
||||
export MPICH_RDMA_ENABLED_CUDA=1
|
||||
export MPICH_GPU_IPC_ENABLED=1
|
||||
export MPICH_GPU_EAGER_REGISTER_HOST_MEM=0
|
||||
export MPICH_GPU_NO_ASYNC_MEMCPY=0
|
||||
|
||||
--------------------------------------------------------------------
|
||||
Frontier/LumiG
|
||||
--------------------------------------------------------------------
|
||||
|
||||
Hiding ROCR_VISIBLE_DEVICES triggers SDMA engines to be used for GPU-GPU
|
||||
|
||||
cat << EOF > select_gpu
|
||||
#!/bin/bash
|
||||
export MPICH_GPU_SUPPORT_ENABLED=1
|
||||
export MPICH_SMP_SINGLE_COPY_MODE=XPMEM
|
||||
export GPU_MAP=(0 1 2 3 7 6 5 4)
|
||||
export NUMA_MAP=(3 3 1 1 2 2 0 0)
|
||||
export GPU=\${GPU_MAP[\$SLURM_LOCALID]}
|
||||
export NUMA=\${NUMA_MAP[\$SLURM_LOCALID]}
|
||||
export HIP_VISIBLE_DEVICES=\$GPU
|
||||
unset ROCR_VISIBLE_DEVICES
|
||||
echo RANK \$SLURM_LOCALID using GPU \$GPU
|
||||
exec numactl -m \$NUMA -N \$NUMA \$*
|
||||
EOF
|
||||
chmod +x ./select_gpu
|
||||
|
||||
srun ./select_gpu BINARY
|
||||
|
||||
|
||||
--------------------------------------------------------------------
|
||||
Mellanox performance with A100 GPU (Tursa, Booster, Leonardo)
|
||||
--------------------------------------------------------------------
|
||||
export OMPI_MCA_btl=^uct,openib
|
||||
export UCX_TLS=gdr_copy,rc,rc_x,sm,cuda_copy,cuda_ipc
|
||||
export UCX_RNDV_SCHEME=put_zcopy
|
||||
export UCX_RNDV_THRESH=16384
|
||||
export UCX_IB_GPU_DIRECT_RDMA=yes
|
||||
|
||||
--------------------------------------------------------------------
|
||||
Mellanox + A100 correctness (Tursa, Booster, Leonardo)
|
||||
--------------------------------------------------------------------
|
||||
export UCX_MEMTYPE_CACHE=n
|
||||
|
||||
--------------------------------------------------------------------
|
||||
MPICH/Aurora/PVC correctness and performance
|
||||
--------------------------------------------------------------------
|
||||
|
||||
https://github.com/pmodels/mpich/issues/7302
|
||||
|
||||
--enable-cuda-aware-mpi=no
|
||||
--enable-unified=no
|
||||
|
||||
Grid's internal D-H-H-D pipeline mode, avoid device memory in MPI
|
||||
Do not use SVM
|
||||
|
||||
Ideally use MPICH with fix to issue 7302:
|
||||
|
||||
https://github.com/pmodels/mpich/pull/7312
|
||||
|
||||
Ideally:
|
||||
MPIR_CVAR_CH4_IPC_GPU_HANDLE_CACHE=generic
|
||||
|
||||
Alternatives:
|
||||
export MPIR_CVAR_NOLOCAL=1
|
||||
export MPIR_CVAR_CH4_IPC_GPU_P2P_THRESHOLD=1000000000
|
||||
|
||||
--------------------------------------------------------------------
|
||||
MPICH/Aurora/PVC correctness and performance
|
||||
--------------------------------------------------------------------
|
||||
|
||||
Broken:
|
||||
export MPIR_CVAR_CH4_OFI_ENABLE_GPU_PIPELINE=1
|
||||
|
||||
This gives good peformance without requiring
|
||||
--enable-cuda-aware-mpi=no
|
||||
|
||||
But is an open issue reported by James Osborn
|
||||
https://github.com/pmodels/mpich/issues/7139
|
||||
|
||||
Possibly resolved but unclear if in the installed software yet.
|
||||
|
||||
************************
|
||||
* 2. COMPILATION
|
||||
************************
|
||||
|
||||
--------------------------------------------------------------------
|
||||
G++ compiler breakage / graveyard
|
||||
--------------------------------------------------------------------
|
||||
|
||||
9.3.0, 10.3.1,
|
||||
https://github.com/paboyle/Grid/issues/290
|
||||
https://github.com/paboyle/Grid/issues/264
|
||||
|
||||
Working (-) Broken (X):
|
||||
|
||||
4.9.0 -
|
||||
4.9.1 -
|
||||
5.1.0 X
|
||||
5.2.0 X
|
||||
5.3.0 X
|
||||
5.4.0 X
|
||||
6.1.0 X
|
||||
6.2.0 X
|
||||
6.3.0 -
|
||||
7.1.0 -
|
||||
8.0.0 (HEAD) -
|
||||
|
||||
https://github.com/paboyle/Grid/issues/100
|
||||
|
||||
--------------------------------------------------------------------
|
||||
AMD GPU nodes :
|
||||
--------------------------------------------------------------------
|
||||
|
||||
multiple ROCM versions broken; use 5.3.0
|
||||
manifests itself as wrong results in fp32
|
||||
|
||||
https://github.com/paboyle/Grid/issues/464
|
||||
|
||||
--------------------------------------------------------------------
|
||||
Aurora/PVC
|
||||
--------------------------------------------------------------------
|
||||
|
||||
SYCL ahead of time compilation (fixes rare runtime JIT errors and faster runtime, PB)
|
||||
SYCL slow link and relocatable code issues (Christoph Lehner)
|
||||
Opt large register file required for good performance in fp64
|
||||
|
||||
|
||||
export SYCL_PROGRAM_COMPILE_OPTIONS="-ze-opt-large-register-file"
|
||||
export LDFLAGS="-fiopenmp -fsycl -fsycl-device-code-split=per_kernel -fsycl-targets=spir64_gen -Xs -device -Xs pvc -fsycl-device-lib=all -lze_loader -L${MKLROOT}/lib -qmkl=parallel -fsycl -lsycl -fPIC -fsycl-max-parallel-link-jobs=16 -fno-sycl-rdc"
|
||||
export CXXFLAGS="-O3 -fiopenmp -fsycl-unnamed-lambda -fsycl -Wno-tautological-compare -qmkl=parallel -fsycl -fno-exceptions -fPIC"
|
||||
|
||||
--------------------------------------------------------------------
|
||||
Aurora/PVC useful extra options
|
||||
--------------------------------------------------------------------
|
||||
|
||||
Host only sanitizer:
|
||||
-Xarch_host -fsanitize=leak
|
||||
-Xarch_host -fsanitize=address
|
||||
|
||||
Deterministic MPI reduction:
|
||||
export MPIR_CVAR_ALLREDUCE_DEVICE_COLLECTIVE=0
|
||||
export MPIR_CVAR_REDUCE_DEVICE_COLLECTIVE=0
|
||||
export MPIR_CVAR_ALLREDUCE_INTRA_ALGORITHM=recursive_doubling
|
||||
unset MPIR_CVAR_CH4_COLL_SELECTION_TUNING_JSON_FILE
|
||||
unset MPIR_CVAR_COLL_SELECTION_TUNING_JSON_FILE
|
||||
unset MPIR_CVAR_CH4_POSIX_COLL_SELECTION_TUNING_JSON_FILE
|
||||
|
||||
|
||||
|
||||
************************
|
||||
* 3. Visual profile tools
|
||||
************************
|
||||
|
||||
--------------------------------------------------------------------
|
||||
Frontier/rocprof
|
||||
--------------------------------------------------------------------
|
||||
|
||||
--------------------------------------------------------------------
|
||||
Aurora/unitrace
|
||||
--------------------------------------------------------------------
|
||||
|
||||
|
||||
--------------------------------------------------------------------
|
||||
Tursa/nsight-sys
|
||||
--------------------------------------------------------------------
|
@ -1,32 +0,0 @@
|
||||
#!/bin/bash
|
||||
#SBATCH --partition lqcd
|
||||
#SBATCH --time=00:50:00
|
||||
#SBATCH -A lqcdtest
|
||||
#SBATCH -q lqcd
|
||||
#SBATCH --exclusive
|
||||
#SBATCH --nodes=1
|
||||
#SBATCH -w genoahost001,genoahost003,genoahost050,genoahost054
|
||||
#SBATCH --ntasks=1
|
||||
#SBATCH --cpus-per-task=64
|
||||
#SBATCH --qos lqcd
|
||||
|
||||
source sourceme.sh
|
||||
|
||||
export PLACES=(1:16:4 1:32:2 0:64:1);
|
||||
export THR=(16 32 64)
|
||||
|
||||
for t in 2
|
||||
do
|
||||
|
||||
export OMP_NUM_THREADS=${THR[$t]}
|
||||
export OMP_PLACES=${PLACES[$t]}
|
||||
export thr=${THR[$t]}
|
||||
|
||||
#for vol in 24.24.24.24 32.32.32.32 48.48.48.96
|
||||
for vol in 48.48.48.96
|
||||
do
|
||||
srun -N1 -n1 ./benchmarks/Benchmark_dwf_fp32 --mpi 1.1.1.1 --grid $vol --dslash-asm --shm 8192 > $vol.1node.thr$thr
|
||||
done
|
||||
#srun -N1 -n1 ./benchmarks/Benchmark_usqcd --mpi 1.1.1.1 --grid $vol > usqcd.1node.thr$thr
|
||||
done
|
||||
|
@ -1,36 +0,0 @@
|
||||
#!/bin/bash
|
||||
#SBATCH --partition lqcd
|
||||
#SBATCH --time=00:50:00
|
||||
#SBATCH -A lqcdtest
|
||||
#SBATCH -q lqcd
|
||||
#SBATCH --exclusive
|
||||
#SBATCH --nodes=2
|
||||
#SBATCH -w genoahost001,genoahost003,genoahost050,genoahost054
|
||||
#SBATCH --ntasks=2
|
||||
#SBATCH --cpus-per-task=64
|
||||
#SBATCH --qos lqcd
|
||||
|
||||
source sourceme.sh
|
||||
|
||||
export PLACES=(1:16:4 1:32:2 0:64:1);
|
||||
export THR=(16 32 64)
|
||||
|
||||
nodes=2
|
||||
mpi=1.1.1.2
|
||||
|
||||
for t in 2
|
||||
do
|
||||
|
||||
export OMP_NUM_THREADS=${THR[$t]}
|
||||
export OMP_PLACES=${PLACES[$t]}
|
||||
export thr=${THR[$t]}
|
||||
|
||||
#srun -N$nodes -n$nodes ./benchmarks/Benchmark_usqcd --mpi $mpi --grid 32.32.32.32 > usqcd.n$nodes.thr$thr
|
||||
|
||||
for vol in 64.64.64.128
|
||||
do
|
||||
srun -N$nodes -n$nodes ./benchmarks/Benchmark_dwf_fp32 --mpi $mpi --grid $vol --dslash-asm --comms-overlap --shm 8192 > $vol.n$nodes.overlap.thr$thr
|
||||
done
|
||||
|
||||
done
|
||||
|
@ -1,16 +0,0 @@
|
||||
../../configure \
|
||||
--enable-comms=mpi-auto \
|
||||
--enable-unified=yes \
|
||||
--enable-shm=shmopen \
|
||||
--enable-shm-fast-path=shmopen \
|
||||
--enable-accelerator=none \
|
||||
--enable-simd=AVX512 \
|
||||
--disable-accelerator-cshift \
|
||||
--disable-fermion-reps \
|
||||
--disable-gparity \
|
||||
CXX=clang++ \
|
||||
MPICXX=mpicxx \
|
||||
CXXFLAGS="-std=c++17"
|
||||
|
||||
|
||||
|
@ -1,4 +0,0 @@
|
||||
source $HOME/spack/share/spack/setup-env.sh
|
||||
spack load llvm@17.0.4
|
||||
export LD_LIBRARY_PATH=/direct/sdcc+u/paboyle/spack/opt/spack/linux-almalinux8-icelake/gcc-8.5.0/llvm-17.0.4-laufdrcip63ivkadmtgoepwmj3dtztdu/lib:$LD_LIBRARY_PATH
|
||||
module load openmpi
|
@ -1,17 +0,0 @@
|
||||
../../src/Grid/configure \
|
||||
--prefix /home/pab/NPR/install \
|
||||
--enable-comms=mpi-auto \
|
||||
--enable-simd=AVX2 \
|
||||
--enable-shm=none \
|
||||
--enable-debug \
|
||||
--with-lime=$CLIME \
|
||||
--with-hdf5=$HDF5 \
|
||||
--with-fftw=$FFTW \
|
||||
--with-gmp=$GMP \
|
||||
--with-mpfr=$MPFR \
|
||||
--disable-gparity \
|
||||
--disable-fermion-reps \
|
||||
CXX=clang++ \
|
||||
MPICXX=mpicxx \
|
||||
CXXFLAGS="-std=c++17 "
|
||||
|
@ -1,28 +0,0 @@
|
||||
source $HOME/spack/share/spack/setup-env.sh
|
||||
spack load llvm@12
|
||||
spack load autoconf%clang@12.0.1
|
||||
spack load automake%clang@12.0.1
|
||||
spack load c-lime%clang@12.0.1
|
||||
spack load fftw%clang@12.0.1
|
||||
spack load gmp%clang@12.0.1
|
||||
spack load mpfr%clang@12.0.1
|
||||
spack load openmpi%clang@12.0.1
|
||||
spack load openssl%clang@12.0.1
|
||||
spack load hdf5+cxx%clang@12.0.1
|
||||
spack load cmake%clang@12.0.1
|
||||
export FFTW=`spack find --paths fftw%clang@12.0.1 | grep ^fftw | awk '{print $2}' `
|
||||
export HDF5=`spack find --paths hdf5+cxx%clang@12.0.1 | grep ^hdf5 | awk '{print $2}' `
|
||||
export CLIME=`spack find --paths c-lime%clang@12.0.1 | grep ^c-lime | awk '{print $2}' `
|
||||
export MPFR=`spack find --paths mpfr%clang@12.0.1 | grep ^mpfr | awk '{print $2}' `
|
||||
export LLVM=`spack find --paths llvm@12 | grep ^llvm | awk '{print $2}' `
|
||||
export OPENSSL=`spack find --paths openssl%clang@12.0.1 | grep openssl | awk '{print $2}' `
|
||||
export GMP=`spack find --paths gmp%clang@12.0.1 | grep ^gmp | awk '{print $2}' `
|
||||
export TCLAP=`spack find --paths tclap%clang@12.0.1 | grep ^tclap | awk '{print $2}' `
|
||||
export LD_LIBRARY_PATH=${TCLAP}/lib:$LD_LIBRARY_PATH
|
||||
export LD_LIBRARY_PATH=$MPFR/lib:$LD_LIBRARY_PATH
|
||||
export LD_LIBRARY_PATH=$GMP/lib:$LD_LIBRARY_PATH
|
||||
export LD_LIBRARY_PATH=$FFTW/lib:$LD_LIBRARY_PATH
|
||||
export LD_LIBRARY_PATH=$LLVM/lib:$LD_LIBRARY_PATH
|
||||
export LD_LIBRARY_PATH=$LLVM/lib/x86_64-unknown-linux-gnu/:$LD_LIBRARY_PATH
|
||||
|
||||
ulimit -s 81920
|
@ -1,19 +0,0 @@
|
||||
cd
|
||||
git clone https://github.com/spack/spack.git
|
||||
source $HOME/spack/share/spack/setup-env.sh
|
||||
|
||||
spack install llvm@12
|
||||
|
||||
spack install autoconf%clang@12.0.1
|
||||
spack install automake%clang@12.0.1
|
||||
spack install c-lime%clang@12.0.1
|
||||
spack install fftw%clang@12.0.1
|
||||
spack install gmp%clang@12.0.1
|
||||
spack install mpfr%clang@12.0.1
|
||||
spack install openmpi%clang@12.0.1
|
||||
spack install openssl%clang@12.0.1
|
||||
spack install hdf5+cxx%clang@12.0.1
|
||||
spack install cmake%clang@12.0.1
|
||||
spack install tclap%clang@12.0.1
|
||||
spack install emacs%clang@12.0.1
|
||||
|
@ -47,20 +47,20 @@ public:
|
||||
void OpDir (const Field &in, Field &out,int dir,int disp) { assert(0); }
|
||||
void OpDirAll (const Field &in, std::vector<Field> &out){ assert(0); };
|
||||
void Op (const Field &in, Field &out){
|
||||
// std::cout << "Op: PVdag M "<<std::endl;
|
||||
std::cout << "Op: PVdag M "<<std::endl;
|
||||
Field tmp(in.Grid());
|
||||
_Mat.M(in,tmp);
|
||||
_PV.Mdag(tmp,out);
|
||||
}
|
||||
void AdjOp (const Field &in, Field &out){
|
||||
// std::cout << "AdjOp: Mdag PV "<<std::endl;
|
||||
std::cout << "AdjOp: Mdag PV "<<std::endl;
|
||||
Field tmp(in.Grid());
|
||||
_PV.M(in,tmp);
|
||||
_Mat.Mdag(tmp,out);
|
||||
}
|
||||
void HermOpAndNorm(const Field &in, Field &out,RealD &n1,RealD &n2){ assert(0); }
|
||||
void HermOp(const Field &in, Field &out){
|
||||
// std::cout << "HermOp: Mdag PV PVdag M"<<std::endl;
|
||||
std::cout << "HermOp: Mdag PV PVdag M"<<std::endl;
|
||||
Field tmp(in.Grid());
|
||||
// _Mat.M(in,tmp);
|
||||
// _PV.Mdag(tmp,out);
|
||||
@ -83,14 +83,14 @@ public:
|
||||
void OpDir (const Field &in, Field &out,int dir,int disp) { assert(0); }
|
||||
void OpDirAll (const Field &in, std::vector<Field> &out){ assert(0); };
|
||||
void Op (const Field &in, Field &out){
|
||||
// std::cout << "Op: PVdag M "<<std::endl;
|
||||
std::cout << "Op: PVdag M "<<std::endl;
|
||||
Field tmp(in.Grid());
|
||||
_Mat.M(in,tmp);
|
||||
_PV.Mdag(tmp,out);
|
||||
out = out + shift * in;
|
||||
}
|
||||
void AdjOp (const Field &in, Field &out){
|
||||
// std::cout << "AdjOp: Mdag PV "<<std::endl;
|
||||
std::cout << "AdjOp: Mdag PV "<<std::endl;
|
||||
Field tmp(in.Grid());
|
||||
_PV.M(tmp,out);
|
||||
_Mat.Mdag(in,tmp);
|
||||
@ -98,7 +98,7 @@ public:
|
||||
}
|
||||
void HermOpAndNorm(const Field &in, Field &out,RealD &n1,RealD &n2){ assert(0); }
|
||||
void HermOp(const Field &in, Field &out){
|
||||
// std::cout << "HermOp: Mdag PV PVdag M"<<std::endl;
|
||||
std::cout << "HermOp: Mdag PV PVdag M"<<std::endl;
|
||||
Field tmp(in.Grid());
|
||||
Op(in,tmp);
|
||||
AdjOp(tmp,out);
|
||||
|
@ -1,14 +0,0 @@
|
||||
<?xml version="1.0"?>
|
||||
<grid>
|
||||
<LanczosParameters>
|
||||
<mass>0.00107</mass>
|
||||
<M5>1.8</M5>
|
||||
<Ls>48</Ls>
|
||||
<Nstop>10</Nstop>
|
||||
<Nk>15</Nk>
|
||||
<Np>85</Np>
|
||||
<ChebyLow>0.003</ChebyLow>
|
||||
<ChebyHigh>60</ChebyHigh>
|
||||
<ChebyOrder>201</ChebyOrder>
|
||||
</LanczosParameters>
|
||||
</grid>
|
@ -1,346 +0,0 @@
|
||||
/*************************************************************************************
|
||||
|
||||
Grid physics library, www.github.com/paboyle/Grid
|
||||
|
||||
Source file: ./tests/Test_dwf_G5R5.cc
|
||||
|
||||
Copyright (C) 2015
|
||||
|
||||
Author: Chulwoo Jung <chulwoo@bnl.gov>
|
||||
From Duo and Bob's Chirality study
|
||||
|
||||
This program is free software; you can redistribute it and/or modify
|
||||
it under the terms of the GNU General Public License as published by
|
||||
the Free Software Foundation; either version 2 of the License, or
|
||||
(at your option) any later version.
|
||||
|
||||
This program is distributed in the hope that it will be useful,
|
||||
but WITHOUT ANY WARRANTY; without even the implied warranty of
|
||||
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
|
||||
GNU General Public License for more details.
|
||||
|
||||
You should have received a copy of the GNU General Public License along
|
||||
with this program; if not, write to the Free Software Foundation, Inc.,
|
||||
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
|
||||
|
||||
See the full license in the file "LICENSE" in the top level distribution
|
||||
directory
|
||||
*************************************************************************************/
|
||||
/* END LEGAL */
|
||||
#include <Grid/Grid.h>
|
||||
|
||||
using namespace std;
|
||||
using namespace Grid;
|
||||
;
|
||||
|
||||
//typedef WilsonFermionD FermionOp;
|
||||
typedef DomainWallFermionD FermionOp;
|
||||
typedef typename DomainWallFermionD::FermionField FermionField;
|
||||
|
||||
|
||||
RealD AllZero(RealD x) { return 0.; }
|
||||
|
||||
namespace Grid {
|
||||
|
||||
struct LanczosParameters: Serializable {
|
||||
GRID_SERIALIZABLE_CLASS_MEMBERS(LanczosParameters,
|
||||
RealD, mass ,
|
||||
RealD, M5 ,
|
||||
Integer, Ls,
|
||||
Integer, Nstop,
|
||||
Integer, Nk,
|
||||
Integer, Np,
|
||||
RealD, ChebyLow,
|
||||
RealD, ChebyHigh,
|
||||
Integer, ChebyOrder)
|
||||
// Integer, StartTrajectory,
|
||||
// Integer, Trajectories, /* @brief Number of sweeps in this run */
|
||||
// bool, MetropolisTest,
|
||||
// Integer, NoMetropolisUntil,
|
||||
// std::string, StartingType,
|
||||
// Integer, SW,
|
||||
// RealD, Kappa,
|
||||
// IntegratorParameters, MD)
|
||||
|
||||
LanczosParameters() {
|
||||
////////////////////////////// Default values
|
||||
mass = 0;
|
||||
// MetropolisTest = true;
|
||||
// NoMetropolisUntil = 10;
|
||||
// StartTrajectory = 0;
|
||||
// SW = 2;
|
||||
// Trajectories = 10;
|
||||
// StartingType = "HotStart";
|
||||
/////////////////////////////////
|
||||
}
|
||||
|
||||
template <class ReaderClass >
|
||||
LanczosParameters(Reader<ReaderClass> & TheReader){
|
||||
initialize(TheReader);
|
||||
}
|
||||
|
||||
template < class ReaderClass >
|
||||
void initialize(Reader<ReaderClass> &TheReader){
|
||||
// std::cout << GridLogMessage << "Reading HMC\n";
|
||||
read(TheReader, "HMC", *this);
|
||||
}
|
||||
|
||||
|
||||
void print_parameters() const {
|
||||
// std::cout << GridLogMessage << "[HMC parameters] Trajectories : " << Trajectories << "\n";
|
||||
// std::cout << GridLogMessage << "[HMC parameters] Start trajectory : " << StartTrajectory << "\n";
|
||||
// std::cout << GridLogMessage << "[HMC parameters] Metropolis test (on/off): " << std::boolalpha << MetropolisTest << "\n";
|
||||
// std::cout << GridLogMessage << "[HMC parameters] Thermalization trajs : " << NoMetropolisUntil << "\n";
|
||||
// std::cout << GridLogMessage << "[HMC parameters] Starting type : " << StartingType << "\n";
|
||||
// MD.print_parameters();
|
||||
}
|
||||
|
||||
};
|
||||
|
||||
}
|
||||
|
||||
int main(int argc, char** argv) {
|
||||
Grid_init(&argc, &argv);
|
||||
|
||||
LanczosParameters LanParams;
|
||||
#if 1
|
||||
{
|
||||
XmlReader HMCrd("LanParams.xml");
|
||||
read(HMCrd,"LanczosParameters",LanParams);
|
||||
}
|
||||
#else
|
||||
{
|
||||
LanParams.mass = mass;
|
||||
}
|
||||
#endif
|
||||
std::cout << GridLogMessage<< LanParams <<std::endl;
|
||||
{
|
||||
XmlWriter HMCwr("LanParams.xml.out");
|
||||
write(HMCwr,"LanczosParameters",LanParams);
|
||||
}
|
||||
|
||||
int Ls=16;
|
||||
RealD M5=1.8;
|
||||
RealD mass = -1.0;
|
||||
|
||||
mass=LanParams.mass;
|
||||
Ls=LanParams.Ls;
|
||||
M5=LanParams.M5;
|
||||
|
||||
GridCartesian* UGrid = SpaceTimeGrid::makeFourDimGrid(
|
||||
GridDefaultLatt(), GridDefaultSimd(Nd, vComplex::Nsimd()),
|
||||
GridDefaultMpi());
|
||||
GridRedBlackCartesian* UrbGrid =
|
||||
SpaceTimeGrid::makeFourDimRedBlackGrid(UGrid);
|
||||
// GridCartesian* FGrid = UGrid;
|
||||
// GridRedBlackCartesian* FrbGrid = UrbGrid;
|
||||
GridCartesian * FGrid = SpaceTimeGrid::makeFiveDimGrid(Ls, UGrid);
|
||||
GridRedBlackCartesian * FrbGrid = SpaceTimeGrid::makeFiveDimRedBlackGrid(Ls, UGrid);
|
||||
// printf("UGrid=%p UrbGrid=%p FGrid=%p FrbGrid=%p\n", UGrid, UrbGrid, FGrid, FrbGrid);
|
||||
|
||||
std::vector<int> seeds4({1, 2, 3, 4});
|
||||
std::vector<int> seeds5({5, 6, 7, 8});
|
||||
GridParallelRNG RNG5(FGrid); RNG5.SeedFixedIntegers(seeds5);
|
||||
GridParallelRNG RNG4(UGrid); RNG4.SeedFixedIntegers(seeds4);
|
||||
GridParallelRNG RNG5rb(FrbGrid); RNG5.SeedFixedIntegers(seeds5);
|
||||
|
||||
LatticeGaugeField Umu(UGrid);
|
||||
|
||||
FieldMetaData header;
|
||||
std::string file("./config");
|
||||
|
||||
int precision32 = 0;
|
||||
int tworow = 0;
|
||||
NerscIO::readConfiguration(Umu,header,file);
|
||||
|
||||
/*
|
||||
std::vector<LatticeColourMatrix> U(4, UGrid);
|
||||
for (int mu = 0; mu < Nd; mu++) {
|
||||
U[mu] = PeekIndex<LorentzIndex>(Umu, mu);
|
||||
}
|
||||
*/
|
||||
|
||||
int Nstop = 10;
|
||||
int Nk = 20;
|
||||
int Np = 80;
|
||||
Nstop=LanParams.Nstop;
|
||||
Nk=LanParams.Nk;
|
||||
Np=LanParams.Np;
|
||||
|
||||
int Nm = Nk + Np;
|
||||
int MaxIt = 10000;
|
||||
RealD resid = 1.0e-5;
|
||||
|
||||
|
||||
//while ( mass > - 5.0){
|
||||
FermionOp Ddwf(Umu,*FGrid,*FrbGrid,*UGrid,*UrbGrid,mass,M5);
|
||||
MdagMLinearOperator<FermionOp,FermionField> HermOp(Ddwf); /// <-----
|
||||
// Gamma5HermitianLinearOperator <FermionOp,LatticeFermion> HermOp2(WilsonOperator); /// <-----
|
||||
Gamma5R5HermitianLinearOperator<FermionOp, LatticeFermion> G5R5Herm(Ddwf);
|
||||
// Gamma5R5HermitianLinearOperator
|
||||
std::vector<double> Coeffs{0, 1.};
|
||||
Polynomial<FermionField> PolyX(Coeffs);
|
||||
|
||||
Chebyshev<FermionField> Cheby(LanParams.ChebyLow,LanParams.ChebyHigh,LanParams.ChebyOrder);
|
||||
|
||||
FunctionHermOp<FermionField> OpCheby(Cheby,HermOp);
|
||||
PlainHermOp<FermionField> Op (HermOp);
|
||||
PlainHermOp<FermionField> Op2 (G5R5Herm);
|
||||
|
||||
ImplicitlyRestartedLanczos<FermionField> IRL(OpCheby, Op, Nstop, Nk, Nm, resid, MaxIt);
|
||||
|
||||
std::vector<RealD> eval(Nm);
|
||||
FermionField src(FGrid);
|
||||
gaussian(RNG5, src);
|
||||
std::vector<FermionField> evec(Nm, FGrid);
|
||||
for (int i = 0; i < 1; i++) {
|
||||
std::cout << i << " / " << Nm << " grid pointer " << evec[i].Grid()
|
||||
<< std::endl;
|
||||
};
|
||||
|
||||
int Nconv;
|
||||
IRL.calc(eval, evec, src, Nconv);
|
||||
|
||||
std::cout << mass <<" : " << eval << std::endl;
|
||||
|
||||
#if 0
|
||||
Gamma g5(Gamma::Algebra::Gamma5) ;
|
||||
ComplexD dot;
|
||||
FermionField tmp(FGrid);
|
||||
// RealD eMe,eMMe;
|
||||
for (int i = 0; i < Nstop ; i++) {
|
||||
// tmp = g5*evec[i];
|
||||
dot = innerProduct(evec[i],evec[i]);
|
||||
// G5R5(tmp,evec[i]);
|
||||
G5R5Herm.HermOpAndNorm(evec[i],tmp,eMe,eMMe);
|
||||
std::cout <<"Norm "<<M5<<" "<< mass << " : " << i << " " << real(dot) << " " << imag(dot) << " "<< eMe << " " <<eMMe<< std::endl ;
|
||||
for (int j = 0; j < Nstop ; j++) {
|
||||
dot = innerProduct(tmp,evec[j]);
|
||||
std::cout <<"G5R5 "<<M5<<" "<< mass << " : " << i << " " <<j<<" " << real(dot) << " " << imag(dot) << std::endl ;
|
||||
}
|
||||
}
|
||||
// src = evec[0]+evec[1]+evec[2];
|
||||
// mass += -0.1;
|
||||
#endif
|
||||
|
||||
//**********************************************************************
|
||||
//orthogonalization
|
||||
//calculat the matrix
|
||||
cout << "Start orthogonalization " << endl;
|
||||
cout << "calculate the matrix element" << endl;
|
||||
vector<LatticeFermion> G5R5Mevec(Nconv, FGrid);
|
||||
vector<LatticeFermion> finalevec(Nconv, FGrid);
|
||||
vector<RealD> eMe(Nconv), eMMe(Nconv);
|
||||
for(int i = 0; i < Nconv; i++){
|
||||
G5R5Herm.HermOpAndNorm(evec[i], G5R5Mevec[i], eMe[i], eMMe[i]);
|
||||
}
|
||||
cout << "Re<evec, G5R5M(evec)>: " << endl;
|
||||
cout << eMe << endl;
|
||||
cout << "<G5R5M(evec), G5R5M(evec)>" << endl;
|
||||
cout << eMMe << endl;
|
||||
vector<vector<ComplexD>> VevecG5R5Mevec(Nconv);
|
||||
Eigen::MatrixXcd evecG5R5Mevec = Eigen::MatrixXcd::Zero(Nconv, Nconv);
|
||||
for(int i = 0; i < Nconv; i++){
|
||||
VevecG5R5Mevec[i].resize(Nconv);
|
||||
for(int j = 0; j < Nconv; j++){
|
||||
VevecG5R5Mevec[i][j] = innerProduct(evec[i], G5R5Mevec[j]);
|
||||
evecG5R5Mevec(i, j) = VevecG5R5Mevec[i][j];
|
||||
}
|
||||
}
|
||||
//calculate eigenvector
|
||||
cout << "Eigen solver" << endl;
|
||||
Eigen::SelfAdjointEigenSolver<Eigen::MatrixXcd> eigensolver(evecG5R5Mevec);
|
||||
vector<RealD> eigeneval(Nconv);
|
||||
vector<vector<ComplexD>> eigenevec(Nconv);
|
||||
for(int i = 0; i < Nconv; i++){
|
||||
eigeneval[i] = eigensolver.eigenvalues()[i];
|
||||
eigenevec[i].resize(Nconv);
|
||||
for(int j = 0; j < Nconv; j++){
|
||||
eigenevec[i][j] = eigensolver.eigenvectors()(i, j);
|
||||
}
|
||||
}
|
||||
//rotation
|
||||
cout << "Do rotation" << endl;
|
||||
for(int i = 0; i < Nconv; i++){
|
||||
finalevec[i] = finalevec[i] - finalevec[i];
|
||||
for(int j = 0; j < Nconv; j++){
|
||||
finalevec[i] = eigenevec[j][i]*evec[j] + finalevec[i];
|
||||
}
|
||||
}
|
||||
//normalize again;
|
||||
for(int i = 0; i < Nconv; i++){
|
||||
RealD tmp_RealD = norm2(finalevec[i]);
|
||||
tmp_RealD = 1./pow(tmp_RealD, 0.5);
|
||||
finalevec[i] = finalevec[i]*tmp_RealD;
|
||||
}
|
||||
|
||||
//check
|
||||
for(int i = 0; i < Nconv; i++){
|
||||
G5R5Herm.HermOpAndNorm(finalevec[i], G5R5Mevec[i], eMe[i], eMMe[i]);
|
||||
}
|
||||
|
||||
//**********************************************************************
|
||||
//sort the eigenvectors
|
||||
vector<LatticeFermion> finalevec_copy(Nconv, FGrid);
|
||||
for(int i = 0; i < Nconv; i++){
|
||||
finalevec_copy[i] = finalevec[i];
|
||||
}
|
||||
vector<RealD> eMe_copy(eMe);
|
||||
for(int i = 0; i < Nconv; i++){
|
||||
eMe[i] = fabs(eMe[i]);
|
||||
eMe_copy[i] = eMe[i];
|
||||
}
|
||||
sort(eMe_copy.begin(), eMe_copy.end());
|
||||
for(int i = 0; i < Nconv; i++){
|
||||
for(int j = 0; j < Nconv; j++){
|
||||
if(eMe[j] == eMe_copy[i]){
|
||||
finalevec[i] = finalevec_copy[j];
|
||||
}
|
||||
}
|
||||
}
|
||||
for(int i = 0; i < Nconv; i++){
|
||||
G5R5Herm.HermOpAndNorm(finalevec[i], G5R5Mevec[i], eMe[i], eMMe[i]);
|
||||
}
|
||||
cout << "Re<evec, G5R5M(evec)>: " << endl;
|
||||
cout << eMe << endl;
|
||||
cout << "<G5R5M(evec), G5R5M(evec)>" << endl;
|
||||
cout << eMMe << endl;
|
||||
|
||||
|
||||
// vector<LatticeFermion> finalevec(Nconv, FGrid);
|
||||
// temporary, until doing rotation
|
||||
// for(int i = 0; i < Nconv; i++)
|
||||
// finalevec[i]=evec[i];
|
||||
//**********************************************************************
|
||||
//calculate chirality matrix
|
||||
vector<LatticeFermion> G5evec(Nconv, FGrid);
|
||||
vector<vector<ComplexD>> chiral_matrix(Nconv);
|
||||
vector<vector<RealD>> chiral_matrix_real(Nconv);
|
||||
for(int i = 0; i < Nconv; i++){
|
||||
// G5evec[i] = G5evec[i] - G5evec[i];
|
||||
G5evec[i] = Zero();
|
||||
for(int j = 0; j < Ls/2; j++){
|
||||
axpby_ssp(G5evec[i], 1., finalevec[i], 0., G5evec[i], j, j);
|
||||
}
|
||||
for(int j = Ls/2; j < Ls; j++){
|
||||
axpby_ssp(G5evec[i], -1., finalevec[i], 0., G5evec[i], j, j);
|
||||
}
|
||||
}
|
||||
for(int i = 0; i < Nconv; i++){
|
||||
chiral_matrix_real[i].resize(Nconv);
|
||||
chiral_matrix[i].resize(Nconv);
|
||||
for(int j = 0; j < Nconv; j++){
|
||||
chiral_matrix[i][j] = innerProduct(finalevec[i], G5evec[j]);
|
||||
chiral_matrix_real[i][j] = abs(chiral_matrix[i][j]);
|
||||
std::cout <<" chiral_matrix_real "<<i<<" "<<j<<" "<< chiral_matrix_real[i][j] << std::endl;
|
||||
}
|
||||
}
|
||||
for(int i = 0; i < Nconv; i++){
|
||||
if(chiral_matrix[i][i].real() < 0.){
|
||||
chiral_matrix_real[i][i] = -1. * chiral_matrix_real[i][i];
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
Grid_finalize();
|
||||
}
|
@ -1,278 +0,0 @@
|
||||
/*************************************************************************************
|
||||
|
||||
Grid physics library, www.github.com/paboyle/Grid
|
||||
|
||||
Source file: ./tests/Test_dwf_lanczos.cc
|
||||
|
||||
Copyright (C) 2015
|
||||
|
||||
Author: Chulwoo Jung <chulwoo@bnl.gov>
|
||||
|
||||
This program is free software; you can redistribute it and/or modify
|
||||
it under the terms of the GNU General Public License as published by
|
||||
the Free Software Foundation; either version 2 of the License, or
|
||||
(at your option) any later version.
|
||||
|
||||
This program is distributed in the hope that it will be useful,
|
||||
but WITHOUT ANY WARRANTY; without even the implied warranty of
|
||||
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
|
||||
GNU General Public License for more details.
|
||||
|
||||
You should have received a copy of the GNU General Public License along
|
||||
with this program; if not, write to the Free Software Foundation, Inc.,
|
||||
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
|
||||
|
||||
See the full license in the file "LICENSE" in the top level distribution
|
||||
directory
|
||||
*************************************************************************************/
|
||||
/* END LEGAL */
|
||||
#include <Grid/Grid.h>
|
||||
|
||||
using namespace std;
|
||||
using namespace Grid;
|
||||
;
|
||||
|
||||
typedef WilsonFermionD FermionOp;
|
||||
typedef typename WilsonFermionD::FermionField FermionField;
|
||||
|
||||
|
||||
RealD AllZero(RealD x) { return 0.; }
|
||||
|
||||
namespace Grid {
|
||||
|
||||
#if 0
|
||||
template<typename Field>
|
||||
class RationalHermOp : public LinearFunction<Field> {
|
||||
public:
|
||||
using LinearFunction<Field>::operator();
|
||||
// OperatorFunction<Field> & _poly;
|
||||
LinearOperatorBase<Field> &_Linop;
|
||||
RealD _massDen, _massNum;
|
||||
|
||||
FunctionHermOp(LinearOperatorBase<Field>& linop, RealD massDen,RealD massNum)
|
||||
: _Linop(linop) ,_massDen(massDen),_massNum(massNum) {};
|
||||
|
||||
void operator()(const Field& in, Field& out) {
|
||||
// _poly(_Linop,in,out);
|
||||
}
|
||||
};
|
||||
#endif
|
||||
|
||||
template<class Matrix,class Field>
|
||||
class InvG5LinearOperator : public LinearOperatorBase<Field> {
|
||||
Matrix &_Mat;
|
||||
RealD _num;
|
||||
RealD _Tol;
|
||||
Integer _MaxIt;
|
||||
Gamma g5;
|
||||
|
||||
public:
|
||||
InvG5LinearOperator(Matrix &Mat,RealD num): _Mat(Mat),_num(num), _Tol(1e-12),_MaxIt(10000), g5(Gamma::Algebra::Gamma5) {};
|
||||
|
||||
// Support for coarsening to a multigrid
|
||||
void OpDiag (const Field &in, Field &out) {
|
||||
assert(0);
|
||||
_Mat.Mdiag(in,out);
|
||||
}
|
||||
void OpDir (const Field &in, Field &out,int dir,int disp) {
|
||||
assert(0);
|
||||
_Mat.Mdir(in,out,dir,disp);
|
||||
}
|
||||
void OpDirAll (const Field &in, std::vector<Field> &out){
|
||||
assert(0);
|
||||
_Mat.MdirAll(in,out);
|
||||
};
|
||||
void Op (const Field &in, Field &out){
|
||||
assert(0);
|
||||
_Mat.M(in,out);
|
||||
}
|
||||
void AdjOp (const Field &in, Field &out){
|
||||
assert(0);
|
||||
_Mat.Mdag(in,out);
|
||||
}
|
||||
void HermOpAndNorm(const Field &in, Field &out,RealD &n1,RealD &n2){
|
||||
HermOp(in,out);
|
||||
ComplexD dot = innerProduct(in,out);
|
||||
n1=real(dot);
|
||||
n2=norm2(out);
|
||||
}
|
||||
void HermOp(const Field &in, Field &out){
|
||||
Field tmp(in.Grid());
|
||||
MdagMLinearOperator<Matrix,Field> denom(_Mat);
|
||||
ConjugateGradient<Field> CG(_Tol,_MaxIt);
|
||||
_Mat.M(in,tmp);
|
||||
tmp += _num*in;
|
||||
_Mat.Mdag(tmp,out);
|
||||
CG(denom,out,tmp);
|
||||
out = g5*tmp;
|
||||
}
|
||||
};
|
||||
|
||||
|
||||
struct LanczosParameters: Serializable {
|
||||
GRID_SERIALIZABLE_CLASS_MEMBERS(LanczosParameters,
|
||||
RealD, mass ,
|
||||
RealD, resid,
|
||||
RealD, ChebyLow,
|
||||
RealD, ChebyHigh,
|
||||
Integer, ChebyOrder)
|
||||
// Integer, StartTrajectory,
|
||||
// Integer, Trajectories, /* @brief Number of sweeps in this run */
|
||||
// bool, MetropolisTest,
|
||||
// Integer, NoMetropolisUntil,
|
||||
// std::string, StartingType,
|
||||
// Integer, SW,
|
||||
// RealD, Kappa,
|
||||
// IntegratorParameters, MD)
|
||||
|
||||
LanczosParameters() {
|
||||
////////////////////////////// Default values
|
||||
mass = 0;
|
||||
// MetropolisTest = true;
|
||||
// NoMetropolisUntil = 10;
|
||||
// StartTrajectory = 0;
|
||||
// SW = 2;
|
||||
// Trajectories = 10;
|
||||
// StartingType = "HotStart";
|
||||
/////////////////////////////////
|
||||
}
|
||||
|
||||
template <class ReaderClass >
|
||||
LanczosParameters(Reader<ReaderClass> & TheReader){
|
||||
initialize(TheReader);
|
||||
}
|
||||
|
||||
template < class ReaderClass >
|
||||
void initialize(Reader<ReaderClass> &TheReader){
|
||||
// std::cout << GridLogMessage << "Reading HMC\n";
|
||||
read(TheReader, "HMC", *this);
|
||||
}
|
||||
|
||||
|
||||
void print_parameters() const {
|
||||
// std::cout << GridLogMessage << "[HMC parameters] Trajectories : " << Trajectories << "\n";
|
||||
// std::cout << GridLogMessage << "[HMC parameters] Start trajectory : " << StartTrajectory << "\n";
|
||||
// std::cout << GridLogMessage << "[HMC parameters] Metropolis test (on/off): " << std::boolalpha << MetropolisTest << "\n";
|
||||
// std::cout << GridLogMessage << "[HMC parameters] Thermalization trajs : " << NoMetropolisUntil << "\n";
|
||||
// std::cout << GridLogMessage << "[HMC parameters] Starting type : " << StartingType << "\n";
|
||||
// MD.print_parameters();
|
||||
}
|
||||
|
||||
};
|
||||
|
||||
}
|
||||
|
||||
int main(int argc, char** argv) {
|
||||
Grid_init(&argc, &argv);
|
||||
|
||||
GridCartesian* UGrid = SpaceTimeGrid::makeFourDimGrid(
|
||||
GridDefaultLatt(), GridDefaultSimd(Nd, vComplex::Nsimd()),
|
||||
GridDefaultMpi());
|
||||
GridRedBlackCartesian* UrbGrid =
|
||||
SpaceTimeGrid::makeFourDimRedBlackGrid(UGrid);
|
||||
GridCartesian* FGrid = UGrid;
|
||||
GridRedBlackCartesian* FrbGrid = UrbGrid;
|
||||
// printf("UGrid=%p UrbGrid=%p FGrid=%p FrbGrid=%p\n", UGrid, UrbGrid, FGrid, FrbGrid);
|
||||
|
||||
std::vector<int> seeds4({1, 2, 3, 4});
|
||||
std::vector<int> seeds5({5, 6, 7, 8});
|
||||
GridParallelRNG RNG5(FGrid);
|
||||
RNG5.SeedFixedIntegers(seeds5);
|
||||
GridParallelRNG RNG4(UGrid);
|
||||
RNG4.SeedFixedIntegers(seeds4);
|
||||
GridParallelRNG RNG5rb(FrbGrid);
|
||||
RNG5.SeedFixedIntegers(seeds5);
|
||||
|
||||
LatticeGaugeField Umu(UGrid);
|
||||
// SU<Nc>::HotConfiguration(RNG4, Umu);
|
||||
|
||||
FieldMetaData header;
|
||||
std::string file("./config");
|
||||
|
||||
int precision32 = 0;
|
||||
int tworow = 0;
|
||||
// NerscIO::writeConfiguration(Umu,file,tworow,precision32);
|
||||
NerscIO::readConfiguration(Umu,header,file);
|
||||
|
||||
/*
|
||||
std::vector<LatticeColourMatrix> U(4, UGrid);
|
||||
for (int mu = 0; mu < Nd; mu++) {
|
||||
U[mu] = PeekIndex<LorentzIndex>(Umu, mu);
|
||||
}
|
||||
*/
|
||||
|
||||
int Nstop = 5;
|
||||
int Nk = 10;
|
||||
int Np = 90;
|
||||
int Nm = Nk + Np;
|
||||
int MaxIt = 10000;
|
||||
RealD resid = 1.0e-5;
|
||||
|
||||
RealD mass = -1.0;
|
||||
|
||||
LanczosParameters LanParams;
|
||||
#if 1
|
||||
{
|
||||
XmlReader HMCrd("LanParams.xml");
|
||||
read(HMCrd,"LanczosParameters",LanParams);
|
||||
}
|
||||
#else
|
||||
{
|
||||
LanParams.mass = mass;
|
||||
}
|
||||
#endif
|
||||
std::cout << GridLogMessage<< LanParams <<std::endl;
|
||||
{
|
||||
XmlWriter HMCwr("LanParams.xml.out");
|
||||
write(HMCwr,"LanczosParameters",LanParams);
|
||||
}
|
||||
|
||||
mass=LanParams.mass;
|
||||
resid=LanParams.resid;
|
||||
|
||||
|
||||
while ( mass > - 5.0){
|
||||
FermionOp WilsonOperator(Umu,*FGrid,*FrbGrid,2.+mass);
|
||||
InvG5LinearOperator<FermionOp,LatticeFermion> HermOp(WilsonOperator,-2.); /// <-----
|
||||
//SchurDiagTwoOperator<FermionOp,FermionField> HermOp(WilsonOperator);
|
||||
// Gamma5HermitianLinearOperator <FermionOp,LatticeFermion> HermOp2(WilsonOperator); /// <-----
|
||||
|
||||
std::vector<double> Coeffs{0, 0, 1.};
|
||||
Polynomial<FermionField> PolyX(Coeffs);
|
||||
Chebyshev<FermionField> Cheby(LanParams.ChebyLow,LanParams.ChebyHigh,LanParams.ChebyOrder);
|
||||
|
||||
FunctionHermOp<FermionField> OpCheby(Cheby,HermOp);
|
||||
// InvHermOp<FermionField> Op(WilsonOperator,HermOp);
|
||||
PlainHermOp<FermionField> Op (HermOp);
|
||||
// PlainHermOp<FermionField> Op2 (HermOp2);
|
||||
|
||||
ImplicitlyRestartedLanczos<FermionField> IRL(OpCheby, Op, Nstop, Nk, Nm, resid, MaxIt);
|
||||
|
||||
std::vector<RealD> eval(Nm);
|
||||
FermionField src(FGrid);
|
||||
gaussian(RNG5, src);
|
||||
std::vector<FermionField> evec(Nm, FGrid);
|
||||
for (int i = 0; i < 1; i++) {
|
||||
std::cout << i << " / " << Nm << " grid pointer " << evec[i].Grid()
|
||||
<< std::endl;
|
||||
};
|
||||
|
||||
int Nconv;
|
||||
IRL.calc(eval, evec, src, Nconv);
|
||||
|
||||
std::cout << mass <<" : " << eval << std::endl;
|
||||
|
||||
Gamma g5(Gamma::Algebra::Gamma5) ;
|
||||
ComplexD dot;
|
||||
FermionField tmp(FGrid);
|
||||
for (int i = 0; i < Nstop ; i++) {
|
||||
tmp = g5*evec[i];
|
||||
dot = innerProduct(tmp,evec[i]);
|
||||
std::cout << mass << " : " << eval[i] << " " << real(dot) << " " << imag(dot) << std::endl ;
|
||||
}
|
||||
src = evec[0]+evec[1]+evec[2];
|
||||
mass += -0.1;
|
||||
}
|
||||
|
||||
Grid_finalize();
|
||||
}
|
@ -1,211 +0,0 @@
|
||||
/*************************************************************************************
|
||||
|
||||
Grid physics library, www.github.com/paboyle/Grid
|
||||
|
||||
Source file: ./tests/Test_dwf_lanczos.cc
|
||||
|
||||
Copyright (C) 2015
|
||||
|
||||
Author: Chulwoo Jung <chulwoo@bnl.gov>
|
||||
|
||||
This program is free software; you can redistribute it and/or modify
|
||||
it under the terms of the GNU General Public License as published by
|
||||
the Free Software Foundation; either version 2 of the License, or
|
||||
(at your option) any later version.
|
||||
|
||||
This program is distributed in the hope that it will be useful,
|
||||
but WITHOUT ANY WARRANTY; without even the implied warranty of
|
||||
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
|
||||
GNU General Public License for more details.
|
||||
|
||||
You should have received a copy of the GNU General Public License along
|
||||
with this program; if not, write to the Free Software Foundation, Inc.,
|
||||
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
|
||||
|
||||
See the full license in the file "LICENSE" in the top level distribution
|
||||
directory
|
||||
*************************************************************************************/
|
||||
/* END LEGAL */
|
||||
#include <Grid/Grid.h>
|
||||
|
||||
using namespace std;
|
||||
using namespace Grid;
|
||||
;
|
||||
|
||||
typedef WilsonFermionD FermionOp;
|
||||
typedef typename WilsonFermionD::FermionField FermionField;
|
||||
|
||||
|
||||
RealD AllZero(RealD x) { return 0.; }
|
||||
|
||||
namespace Grid {
|
||||
|
||||
struct LanczosParameters: Serializable {
|
||||
GRID_SERIALIZABLE_CLASS_MEMBERS(LanczosParameters,
|
||||
RealD, mass ,
|
||||
RealD, ChebyLow,
|
||||
RealD, ChebyHigh,
|
||||
Integer, ChebyOrder)
|
||||
// Integer, StartTrajectory,
|
||||
// Integer, Trajectories, /* @brief Number of sweeps in this run */
|
||||
// bool, MetropolisTest,
|
||||
// Integer, NoMetropolisUntil,
|
||||
// std::string, StartingType,
|
||||
// Integer, SW,
|
||||
// RealD, Kappa,
|
||||
// IntegratorParameters, MD)
|
||||
|
||||
LanczosParameters() {
|
||||
////////////////////////////// Default values
|
||||
mass = 0;
|
||||
// MetropolisTest = true;
|
||||
// NoMetropolisUntil = 10;
|
||||
// StartTrajectory = 0;
|
||||
// SW = 2;
|
||||
// Trajectories = 10;
|
||||
// StartingType = "HotStart";
|
||||
/////////////////////////////////
|
||||
}
|
||||
|
||||
template <class ReaderClass >
|
||||
LanczosParameters(Reader<ReaderClass> & TheReader){
|
||||
initialize(TheReader);
|
||||
}
|
||||
|
||||
template < class ReaderClass >
|
||||
void initialize(Reader<ReaderClass> &TheReader){
|
||||
// std::cout << GridLogMessage << "Reading HMC\n";
|
||||
read(TheReader, "HMC", *this);
|
||||
}
|
||||
|
||||
|
||||
void print_parameters() const {
|
||||
// std::cout << GridLogMessage << "[HMC parameters] Trajectories : " << Trajectories << "\n";
|
||||
// std::cout << GridLogMessage << "[HMC parameters] Start trajectory : " << StartTrajectory << "\n";
|
||||
// std::cout << GridLogMessage << "[HMC parameters] Metropolis test (on/off): " << std::boolalpha << MetropolisTest << "\n";
|
||||
// std::cout << GridLogMessage << "[HMC parameters] Thermalization trajs : " << NoMetropolisUntil << "\n";
|
||||
// std::cout << GridLogMessage << "[HMC parameters] Starting type : " << StartingType << "\n";
|
||||
// MD.print_parameters();
|
||||
}
|
||||
|
||||
};
|
||||
|
||||
}
|
||||
|
||||
int main(int argc, char** argv) {
|
||||
Grid_init(&argc, &argv);
|
||||
|
||||
GridCartesian* UGrid = SpaceTimeGrid::makeFourDimGrid(
|
||||
GridDefaultLatt(), GridDefaultSimd(Nd, vComplex::Nsimd()),
|
||||
GridDefaultMpi());
|
||||
GridRedBlackCartesian* UrbGrid =
|
||||
SpaceTimeGrid::makeFourDimRedBlackGrid(UGrid);
|
||||
GridCartesian* FGrid = UGrid;
|
||||
GridRedBlackCartesian* FrbGrid = UrbGrid;
|
||||
// printf("UGrid=%p UrbGrid=%p FGrid=%p FrbGrid=%p\n", UGrid, UrbGrid, FGrid, FrbGrid);
|
||||
|
||||
std::vector<int> seeds4({1, 2, 3, 4});
|
||||
std::vector<int> seeds5({5, 6, 7, 8});
|
||||
GridParallelRNG RNG5(FGrid);
|
||||
RNG5.SeedFixedIntegers(seeds5);
|
||||
GridParallelRNG RNG4(UGrid);
|
||||
RNG4.SeedFixedIntegers(seeds4);
|
||||
GridParallelRNG RNG5rb(FrbGrid);
|
||||
RNG5.SeedFixedIntegers(seeds5);
|
||||
|
||||
LatticeGaugeField Umu(UGrid);
|
||||
// SU<Nc>::HotConfiguration(RNG4, Umu);
|
||||
|
||||
FieldMetaData header;
|
||||
std::string file("./config");
|
||||
|
||||
int precision32 = 0;
|
||||
int tworow = 0;
|
||||
// NerscIO::writeConfiguration(Umu,file,tworow,precision32);
|
||||
NerscIO::readConfiguration(Umu,header,file);
|
||||
|
||||
/*
|
||||
std::vector<LatticeColourMatrix> U(4, UGrid);
|
||||
for (int mu = 0; mu < Nd; mu++) {
|
||||
U[mu] = PeekIndex<LorentzIndex>(Umu, mu);
|
||||
}
|
||||
*/
|
||||
|
||||
int Nstop = 10;
|
||||
int Nk = 20;
|
||||
int Np = 80;
|
||||
int Nm = Nk + Np;
|
||||
int MaxIt = 10000;
|
||||
RealD resid = 1.0e-5;
|
||||
|
||||
RealD mass = -1.0;
|
||||
|
||||
LanczosParameters LanParams;
|
||||
#if 1
|
||||
{
|
||||
XmlReader HMCrd("LanParams.xml");
|
||||
read(HMCrd,"LanczosParameters",LanParams);
|
||||
}
|
||||
#else
|
||||
{
|
||||
LanParams.mass = mass;
|
||||
}
|
||||
#endif
|
||||
std::cout << GridLogMessage<< LanParams <<std::endl;
|
||||
{
|
||||
XmlWriter HMCwr("LanParams.xml.out");
|
||||
write(HMCwr,"LanczosParameters",LanParams);
|
||||
}
|
||||
|
||||
mass=LanParams.mass;
|
||||
|
||||
|
||||
while ( mass > - 5.0){
|
||||
FermionOp WilsonOperator(Umu,*FGrid,*FrbGrid,mass);
|
||||
MdagMLinearOperator<FermionOp,FermionField> HermOp(WilsonOperator); /// <-----
|
||||
//SchurDiagTwoOperator<FermionOp,FermionField> HermOp(WilsonOperator);
|
||||
Gamma5HermitianLinearOperator <FermionOp,LatticeFermion> HermOp2(WilsonOperator); /// <-----
|
||||
|
||||
std::vector<double> Coeffs{0, 1.};
|
||||
Polynomial<FermionField> PolyX(Coeffs);
|
||||
// Chebyshev<FermionField> Cheby(0.5, 60., 31);
|
||||
// RealD, ChebyLow,
|
||||
// RealD, ChebyHigh,
|
||||
// Integer, ChebyOrder)
|
||||
|
||||
Chebyshev<FermionField> Cheby(LanParams.ChebyLow,LanParams.ChebyHigh,LanParams.ChebyOrder);
|
||||
|
||||
FunctionHermOp<FermionField> OpCheby(Cheby,HermOp);
|
||||
PlainHermOp<FermionField> Op (HermOp);
|
||||
PlainHermOp<FermionField> Op2 (HermOp2);
|
||||
|
||||
ImplicitlyRestartedLanczos<FermionField> IRL(OpCheby, Op2, Nstop, Nk, Nm, resid, MaxIt);
|
||||
|
||||
std::vector<RealD> eval(Nm);
|
||||
FermionField src(FGrid);
|
||||
gaussian(RNG5, src);
|
||||
std::vector<FermionField> evec(Nm, FGrid);
|
||||
for (int i = 0; i < 1; i++) {
|
||||
std::cout << i << " / " << Nm << " grid pointer " << evec[i].Grid()
|
||||
<< std::endl;
|
||||
};
|
||||
|
||||
int Nconv;
|
||||
IRL.calc(eval, evec, src, Nconv);
|
||||
|
||||
std::cout << mass <<" : " << eval << std::endl;
|
||||
|
||||
Gamma g5(Gamma::Algebra::Gamma5) ;
|
||||
ComplexD dot;
|
||||
FermionField tmp(FGrid);
|
||||
for (int i = 0; i < Nstop ; i++) {
|
||||
tmp = g5*evec[i];
|
||||
dot = innerProduct(tmp,evec[i]);
|
||||
std::cout << mass << " : " << eval[i] << " " << real(dot) << " " << imag(dot) << std::endl ;
|
||||
}
|
||||
src = evec[0]+evec[1]+evec[2];
|
||||
mass += -0.1;
|
||||
}
|
||||
|
||||
Grid_finalize();
|
||||
}
|
Reference in New Issue
Block a user