first cmake draft, source relocation, not working

.gitignore

@@ -12,22 +12,18 @@ sandbox/*
 
 # autotools
 autom4te.cache/*
-*.in
-*.in~
-config.h*
 configure
 configure~
 .buildutils/*
 aclocal.m4
 
 # bison/flex generated sources
-lib/*Lexer.cpp
-lib/*Parser.cpp
-lib/*Parser.hpp
+lib/LatAnalyze/*Lexer.cpp
+lib/LatAnalyze/*Parser.cpp
+lib/LatAnalyze/*Parser.hpp
 
 # Eigen headers and archives
-lib/Eigen
-lib/eigen_files.mk
+lib/LatAnalyze/Eigen
 eigen-*.tar.bz2
 
 # CI builds

CMakeLists.txt

@@ -0,0 +1,42 @@
+cmake_minimum_required(VERSION 3.11.0)
+project(
+  LatAnalyze
+  VERSION 3.6
+  LANGUAGES C CXX)
+set(CMAKE_CXX_STANDARD 11)
+
+include(FetchContent)
+include(FindPackageMessage)
+
+set(FETCHCONTENT_BASE_DIR ${CMAKE_BINARY_DIR}/deps)
+FetchContent_Declare(
+  Eigen3
+  GIT_REPOSITORY https://gitlab.com/libeigen/eigen.git
+  GIT_TAG 3.4.0)
+FetchContent_GetProperties(Eigen3)
+if(NOT eigen3_POPULATED)
+  FetchContent_Populate(Eigen3)
+  message(STATUS "Eigen3 fetched")
+endif()
+file(CREATE_LINK ${eigen3_SOURCE_DIR}/Eigen ${CMAKE_SOURCE_DIR}/lib/LatAnalyze/Eigen
+     SYMBOLIC)
+
+find_package(GSL REQUIRED)
+find_package(HDF5 REQUIRED COMPONENTS C CXX)
+find_package(Minuit2)
+if(Minuit2_FOUND)
+  find_package_message(
+    Minuit2
+    "Found Minuit2: ${Minuit2_DIR} (found version \"${Minuit2_VERSION}\")" " ")
+else()
+  message(STATUS "Minuit2 not found")
+endif()
+find_package(NLopt)
+if(NLopt_FOUND)
+  find_package_message(
+    NLopt "Found NLopt: ${NLopt_DIR} (found version \"${NLopt_VERSION}\")" " ")
+else()
+  message(STATUS "NLopt not found")
+endif()
+
+add_subdirectory(lib)

lib/CMakeLists.txt

@@ -0,0 +1,131 @@
+set(CMAKE_BUILD_WITH_INSTALL_RPATH TRUE)
+set(CMAKE_INSTALL_RPATH "${CMAKE_INSTALL_LIBDIR}")
+
+include(FindBISON)
+include(FindFLEX)
+find_package(BISON REQUIRED)
+find_package(FLEX REQUIRED)
+
+bison_target(AsciiParser LatAnalyze/Io/AsciiParser.ypp
+             ${CMAKE_CURRENT_BINARY_DIR}/AsciiParser.cpp
+             COMPILE_FLAGS "-Wno-deprecated")
+flex_target(AsciiLexer LatAnalyze/Io/AsciiLexer.lpp
+            ${CMAKE_CURRENT_BINARY_DIR}/AsciiLexer.cpp)
+add_flex_bison_dependency(AsciiLexer AsciiParser)
+
+bison_target(MathParser LatAnalyze/Core/MathParser.ypp
+             ${CMAKE_CURRENT_BINARY_DIR}/MathParser.cpp
+             COMPILE_FLAGS "-Wno-deprecated")
+flex_target(MathLexer LatAnalyze/Core/MathLexer.lpp
+            ${CMAKE_CURRENT_BINARY_DIR}/MathLexer.cpp)
+add_flex_bison_dependency(MathLexer MathParser)
+
+add_library(LatAnalyze SHARED)
+file(GLOB_RECURSE EIGEN_HEADERS Eigen/*)
+target_sources(
+  LatAnalyze
+  PRIVATE ${BISON_AsciiParser_OUTPUTS}
+          ${FLEX_AsciiLexer_OUTPUTS}
+          ${BISON_MathParser_OUTPUTS}
+          ${FLEX_MathLexer_OUTPUTS}
+          LatAnalyze/Core/Exceptions.cpp
+          LatAnalyze/Core/Mat.cpp
+          LatAnalyze/Core/Math.cpp
+          LatAnalyze/Core/MathInterpreter.cpp
+          LatAnalyze/Core/OptParser.cpp
+          LatAnalyze/Core/Plot.cpp
+          LatAnalyze/Core/ThreadPool.cpp
+          LatAnalyze/Core/Utilities.cpp
+          LatAnalyze/Functional/CompiledFunction.cpp
+          LatAnalyze/Functional/CompiledModel.cpp
+          LatAnalyze/Functional/Function.cpp
+          LatAnalyze/Functional/Model.cpp
+          LatAnalyze/Functional/TabFunction.cpp
+          LatAnalyze/Global.cpp
+          LatAnalyze/Io/AsciiFile.cpp
+          LatAnalyze/Io/BinReader.cpp
+          LatAnalyze/Io/File.cpp
+          LatAnalyze/Io/Hdf5File.cpp
+          LatAnalyze/Io/Io.cpp
+          LatAnalyze/Io/Xml/tinyxml2.cpp
+          LatAnalyze/Io/XmlReader.cpp
+          LatAnalyze/Numerical/DWT.cpp
+          LatAnalyze/Numerical/DWTFilters.cpp
+          LatAnalyze/Numerical/Derivative.cpp
+          LatAnalyze/Numerical/GslFFT.cpp
+          LatAnalyze/Numerical/GslHybridRootFinder.cpp
+          LatAnalyze/Numerical/GslMinimizer.cpp
+          LatAnalyze/Numerical/GslQagsIntegrator.cpp
+          LatAnalyze/Numerical/Minimizer.cpp
+          LatAnalyze/Numerical/MinuitMinimizer.cpp
+          LatAnalyze/Numerical/NloptMinimizer.cpp
+          LatAnalyze/Numerical/RootFinder.cpp
+          LatAnalyze/Numerical/Solver.cpp
+          LatAnalyze/Physics/CorrelatorFitter.cpp
+          LatAnalyze/Physics/DataFilter.cpp
+          LatAnalyze/Physics/EffectiveMass.cpp
+          LatAnalyze/Statistics/FitInterface.cpp
+          LatAnalyze/Statistics/Histogram.cpp
+          LatAnalyze/Statistics/Random.cpp
+          LatAnalyze/Statistics/StatArray.cpp
+          LatAnalyze/Statistics/XYSampleData.cpp
+          LatAnalyze/Statistics/XYStatData.cpp
+  PUBLIC FILE_SET
+         public_headers
+         TYPE
+         HEADERS
+         FILES
+         ${EIGEN_HEADERS}
+         LatAnalyze/Core/Eigen.hpp
+         LatAnalyze/Core/EigenPlugin.hpp
+         LatAnalyze/Core/Exceptions.hpp
+         LatAnalyze/Core/Mat.hpp
+         LatAnalyze/Core/Math.hpp
+         LatAnalyze/Core/MathInterpreter.hpp
+         LatAnalyze/Core/OptParser.hpp
+         LatAnalyze/Core/ParserState.hpp
+         LatAnalyze/Core/Plot.hpp
+         LatAnalyze/Core/ThreadPool.hpp
+         LatAnalyze/Core/Utilities.hpp
+         LatAnalyze/Core/stdincludes.hpp
+         LatAnalyze/Functional/CompiledFunction.hpp
+         LatAnalyze/Functional/CompiledModel.hpp
+         LatAnalyze/Functional/Function.hpp
+         LatAnalyze/Functional/Model.hpp
+         LatAnalyze/Functional/TabFunction.hpp
+         LatAnalyze/Global.hpp
+         LatAnalyze/Io/AsciiFile.hpp
+         LatAnalyze/Io/BinReader.hpp
+         LatAnalyze/Io/File.hpp
+         LatAnalyze/Io/Hdf5File.hpp
+         LatAnalyze/Io/Io.hpp
+         LatAnalyze/Io/IoObject.hpp
+         LatAnalyze/Io/Xml/tinyxml2.hpp
+         LatAnalyze/Io/XmlReader.hpp
+         LatAnalyze/Numerical/DWT.hpp
+         LatAnalyze/Numerical/DWTFilters.hpp
+         LatAnalyze/Numerical/Derivative.hpp
+         LatAnalyze/Numerical/FFT.hpp
+         LatAnalyze/Numerical/GslFFT.hpp
+         LatAnalyze/Numerical/GslHybridRootFinder.hpp
+         LatAnalyze/Numerical/GslMinimizer.hpp
+         LatAnalyze/Numerical/GslQagsIntegrator.hpp
+         LatAnalyze/Numerical/Integrator.hpp
+         LatAnalyze/Numerical/Minimizer.hpp
+         LatAnalyze/Numerical/MinuitMinimizer.hpp
+         LatAnalyze/Numerical/NloptMinimizer.hpp
+         LatAnalyze/Numerical/RootFinder.hpp
+         LatAnalyze/Numerical/Solver.hpp
+         LatAnalyze/Physics/CorrelatorFitter.hpp
+         LatAnalyze/Physics/DataFilter.hpp
+         LatAnalyze/Physics/EffectiveMass.hpp
+         LatAnalyze/Statistics/Dataset.hpp
+         LatAnalyze/Statistics/FitInterface.hpp
+         LatAnalyze/Statistics/Histogram.hpp
+         LatAnalyze/Statistics/MatSample.hpp
+         LatAnalyze/Statistics/Random.hpp
+         LatAnalyze/Statistics/StatArray.hpp
+         LatAnalyze/Statistics/XYSampleData.hpp
+         LatAnalyze/Statistics/XYStatData.hpp
+         LatAnalyze/includes.hpp)
+target_link_libraries(LatAnalyze PUBLIC GSL::gsl HDF5 Minuit2 NLopt)