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resample: output dir option

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This commit is contained in:
Antonin Portelli 2014-10-21 17:36:02 +01:00
parent 89cf008fb8
commit 4506e1689c
1 changed files with 14 additions and 9 deletions
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23
utils/resample.cpp
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@ -34,7 +34,7 @@ using namespace Latan;
static void usage(const string &cmdName) static void usage(const string &cmdName)
{ {
cerr << "usage: " << cmdName; cerr << "usage: " << cmdName;
cerr << " [-n <nsample> -b <bin size> -r <state>]"; cerr << " [-n <nsample> -b <bin size> -r <state> -o <output dir>]";
cerr << " <data list> <name list>"; cerr << " <data list> <name list>";
cerr << endl; cerr << endl;
exit(EXIT_FAILURE); exit(EXIT_FAILURE);
@ -44,12 +44,12 @@ int main(int argc, char *argv[])
{ {
// argument parsing //////////////////////////////////////////////////////// // argument parsing ////////////////////////////////////////////////////////
int c; int c;
string manFileName, nameFileName, stateFileName, cmdName; string manFileName, nameFileName, stateFileName, cmdName, outDirName = ".";
Index binSize = 1, nSample = DEF_NSAMPLE; Index binSize = 1, nSample = DEF_NSAMPLE;
opterr = 0; opterr = 0;
cmdName = basename(argv[0]); cmdName = basename(argv[0]);
while ((c = getopt(argc, argv, "b:n:r:")) != -1) while ((c = getopt(argc, argv, "b:n:r:o:")) != -1)
{ {
switch (c) switch (c)
{ {
@ -59,6 +59,9 @@ int main(int argc, char *argv[])
case 'n': case 'n':
nSample = strTo<Index>(optarg); nSample = strTo<Index>(optarg);
break; break;
case 'o':
outDirName = optarg;
break;
case 'r': case 'r':
stateFileName = optarg; stateFileName = optarg;
break; break;
@ -89,10 +92,11 @@ int main(int argc, char *argv[])
cout << "================================================" << endl; cout << "================================================" << endl;
cout << "Data resampler" << endl; cout << "Data resampler" << endl;
cout << "------------------------------------------------" << endl; cout << "------------------------------------------------" << endl;
cout << " #file= " << dataFileName.size() << endl; cout << " #file= " << dataFileName.size() << endl;
cout << " #name= " << name.size() << endl; cout << " #name= " << name.size() << endl;
cout << " bin size= " << binSize << endl; cout << " bin size= " << binSize << endl;
cout << " #sample= " << nSample << endl; cout << " #sample= " << nSample << endl;
cout << "output dir: " << outDirName << endl;
cout << "------------------------------------------------" << endl; cout << "------------------------------------------------" << endl;
// data loading //////////////////////////////////////////////////////////// // data loading ////////////////////////////////////////////////////////////
@ -129,7 +133,7 @@ int main(int argc, char *argv[])
} }
for (unsigned int i = 0; i < name.size(); ++i) for (unsigned int i = 0; i < name.size(); ++i)
{ {
const string outFileName = name[i] + "_" + manFileName + ".boot"; const string outFileName = name[i] + "_" + manFileName + ".sample";
cout << '\r' << ProgressBar(i + 1, name.size()); cout << '\r' << ProgressBar(i + 1, name.size());
data[name[i]].bin(binSize); data[name[i]].bin(binSize);
@ -138,7 +142,8 @@ int main(int argc, char *argv[])
g.setState(state); g.setState(state);
} }
s = data[name[i]].bootstrapMean(nSample, g); s = data[name[i]].bootstrapMean(nSample, g);
Io::save<DMatSample, AsciiFile>(s, outFileName); Io::save<DMatSample, AsciiFile>(s, outDirName + "/" + outFileName,
File::Mode::write, outFileName);
} }
cout << endl; cout << endl;