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+1 -7
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@@ -104,13 +104,11 @@ inline int GridSplitVectorIndex(GridBase *full,GridBase *split)
// line (--batched-solver-split). Uses the trailing dimensions of grid's processor and shm
// layouts, so it works for 4d and 5d grids. Returns grid's own processor layout (one
// partition) when no split is requested. Asserts divisibility; warns when partitions
// straddle nodes, when node boundaries are not visible, or when there are more partitions
// than right-hand sides.
// straddle nodes or when node boundaries are not visible.
/////////////////////////////////////////////////////////////////////////////////////////////
inline Coordinate BatchedSolverSplitLayout(GridBase *grid,
const Coordinate &request,
bool node,
int nbatch,
int &partitions)
{
int nd = GridDefaultMpi().size();
@@ -168,10 +166,6 @@ inline Coordinate BatchedSolverSplitLayout(GridBase *grid,
std::cout << GridLogWarning << "BatchedSolverSplit: partitions " << split
<< " straddle node boundaries (node layout " << shm << "); inner solves will communicate off node" << std::endl;
}
if ( partitions > nbatch ) {
std::cout << GridLogWarning << "BatchedSolverSplit: " << partitions << " partitions for "
<< nbatch << " right-hand sides; the extra partitions only solve zero padding" << std::endl;
}
return split;
}
@@ -53,9 +53,17 @@ public:
// Inner solves on independent partitions of the communicator (--batched-solver-split).
// BatchedSplit is the partition MPI layout, empty for no split; BatchedSplitNode selects
// one partition per node. Default from the command line; callers may override.
Coordinate BatchedSplit;
bool BatchedSplitNode;
// one partition per node. Fixed at construction, default from the command line.
const Coordinate BatchedSplit;
const bool BatchedSplitNode;
// Copy of Linop_f on the partitions, made once at construction and owned; nullptr when
// there is no split or the operator cannot be split. It holds the gauge field as it was at
// construction: a solver must not outlive a change of the operator's gauge field. The
// outer defect correction uses Linop_d, so a stale copy would cost convergence, not
// correctness.
SplitOperator<FieldF> *split = nullptr;
int Partitions = 1;
MixedPrecisionConjugateGradientBatched(RealD tol,
Integer maxinnerit,
@@ -64,11 +72,37 @@ public:
GridBase* _sp_grid,
LinearOperatorBase<FieldF> &_Linop_f,
LinearOperatorBase<FieldD> &_Linop_d,
bool _updateResidual=true) :
bool _updateResidual=true,
const Coordinate &_split=GridDefaultBatchedSolverSplit(),
bool _split_node=GridDefaultBatchedSolverSplitNode()) :
Linop_f(_Linop_f), Linop_d(_Linop_d),
Tolerance(tol), InnerTolerance(tol), MaxInnerIterations(maxinnerit), MaxOuterIterations(maxouterit), MaxPatchupIterations(maxpatchit), SinglePrecGrid(_sp_grid),
OuterLoopNormMult(100.), guesser(NULL), updateResidual(_updateResidual),
BatchedSplit(GridDefaultBatchedSolverSplit()), BatchedSplitNode(GridDefaultBatchedSolverSplitNode()) { };
BatchedSplit(_split), BatchedSplitNode(_split_node)
{
Coordinate layout = BatchedSolverSplitLayout(SinglePrecGrid,BatchedSplit,BatchedSplitNode,Partitions);
if ( Partitions > 1 ) {
double t0 = usecond();
split = Linop_f.SplitClone(layout);
double t1 = usecond();
if ( split == nullptr ) {
std::cout << GridLogMessage << "MixedPrecisionConjugateGradientBatched: operator cannot be split; serial inner solves" << std::endl;
} else {
std::cout << GridLogMessage << "MixedPrecisionConjugateGradientBatched: split clone " << (t1-t0)/1.0e6 << " s" << std::endl;
HostMemoryReport(SinglePrecGrid,GridLogMessage,"MixedPrecisionConjugateGradientBatched: after split clone");
}
}
};
// Owns split
MixedPrecisionConjugateGradientBatched(const MixedPrecisionConjugateGradientBatched &) = delete;
MixedPrecisionConjugateGradientBatched &operator=(const MixedPrecisionConjugateGradientBatched &) = delete;
~MixedPrecisionConjugateGradientBatched(void)
{
delete split;
}
void useGuesser(LinearFunction<FieldF> &g){
guesser = &g;
@@ -139,21 +173,10 @@ public:
ConjugateGradient<FieldF> CG_f(inner_tol, MaxInnerIterations);
CG_f.ErrorOnNoConverge = false;
//Optionally clone the single precision operator onto split-communicator partitions
GridStopWatch SplitCloneTimer;
SplitTimers splitTimers;
SplitOperator<FieldF> *split = nullptr;
int partitions;
Coordinate layout = BatchedSolverSplitLayout(SinglePrecGrid,BatchedSplit,BatchedSplitNode,NBatch,partitions);
if ( partitions > 1 ) {
SplitCloneTimer.Start();
split = Linop_f.SplitClone(layout);
SplitCloneTimer.Stop();
if ( split == nullptr ) {
std::cout << GridLogMessage << "MixedPrecisionConjugateGradientBatched: operator cannot be split; serial inner solves" << std::endl;
} else {
HostMemoryReport(DoublePrecGrid,GridLogMessage,"MixedPrecisionConjugateGradientBatched: after split clone");
}
SplitTimers splitTimers;
if ( split != nullptr && split->Partitions > NBatch ) {
std::cout << GridLogWarning << "MixedPrecisionConjugateGradientBatched: " << split->Partitions << " partitions for "
<< NBatch << " right-hand sides; the extra partitions only solve zero padding" << std::endl;
}
Integer &outer_iter = TotalOuterIterations; //so it will be equal to the final iteration count
@@ -221,10 +244,6 @@ public:
}
SplitCloneTimer.Start();
delete split;
SplitCloneTimer.Stop();
//Final trial CG
std::cout << GridLogMessage << std::endl;
std::cout<<GridLogMessage<<"MixedPrecisionConjugateGradientBatched: Starting final patch-up double-precision solve"<<std::endl;
@@ -246,16 +265,15 @@ public:
std::cout << GridLogMessage << std::endl;
std::cout<<GridLogMessage<<"MixedPrecisionConjugateGradientBatched: Total time " << TotalTimer.Elapsed() << " Precision change " << PrecChangeTimer.Elapsed() << " Inner CG total " << InnerCGtimer.Elapsed() << std::endl;
std::cout<<GridLogMessage<<"MixedPrecisionConjugateGradientBatched: Outer residual " << OuterResidualTimer.Elapsed() << " Patch-up " << PatchupTimer.Elapsed() << std::endl;
if ( partitions > 1 ) {
std::cout<<GridLogMessage<<"MixedPrecisionConjugateGradientBatched: Split clone and delete " << SplitCloneTimer.Elapsed()
<< " Grid_split " << splitTimers.Split.Elapsed() << " (" << splitTimers.SplitCalls << " calls)"
if ( split != nullptr ) {
std::cout<<GridLogMessage<<"MixedPrecisionConjugateGradientBatched: Grid_split " << splitTimers.Split.Elapsed() << " (" << splitTimers.SplitCalls << " calls)"
<< " Grid_unsplit " << splitTimers.Unsplit.Elapsed() << " (" << splitTimers.UnsplitCalls << " calls)"
<< " Staging copies " << splitTimers.Staging.Elapsed()
<< " Host to device " << splitTimers.H2D.Elapsed()
<< " Iteration count sum " << splitTimers.Reduce.Elapsed() << std::endl;
}
double accounted = PrecChangeTimer.useconds() + InnerCGtimer.useconds() + OuterResidualTimer.useconds()
+ PatchupTimer.useconds() + SplitCloneTimer.useconds() + splitTimers.Split.useconds()
+ PatchupTimer.useconds() + splitTimers.Split.useconds()
+ splitTimers.Unsplit.useconds() + splitTimers.Staging.useconds() + splitTimers.H2D.useconds()
+ splitTimers.Reduce.useconds();
std::cout<<GridLogMessage<<"MixedPrecisionConjugateGradientBatched: Unaccounted " << (TotalTimer.useconds()-accounted)/1.0e6 << " s" << std::endl;
+276 -310
View File
@@ -1550,212 +1550,277 @@ void precisionChange(Lattice<VobjOut> &out, const Lattice<VobjIn> &in){
////////////////////////////////////////////////////////////////////////////////
// Communicate between grids
////////////////////////////////////////////////////////////////////////////////
///////////////////////////////////////////////////////////////////////////////////////////////////////////
// SIMPLE CASE:
///////////////////////////////////////////////////////////////////////////////////////////////////////////
/////////////////////////////////////////////////////////////////////////////////////////////
// Grid_split / Grid_unsplit
//
// Mesh of nodes (2x2) ; subdivide to 1x1 subdivisions
// The split grid divides the full grid's processor layout Pf into partitions of layout
// Ps; ratio R = Pf/Ps per dimension, nvector = prod R partitions. A rank at full processor
// coordinate c belongs to partition q = c/Ps at split coordinate s = c%Ps, and partition q
// holds vector index lex(q,R) (GridSplitVectorIndex). Local volumes satisfy
// Ls = Lf * R per dimension.
//
// Lex ord:
// N0 va0 vb0 vc0 vd0 N1 va1 vb1 vc1 vd1
// N2 va2 vb2 vc2 vd2 N3 va3 vb3 vc3 vd3
// Every full-grid rank's local block of field v lies wholly inside one split-grid rank's
// local volume, in the sub-box at offset o = c%R (units of Lf), on the rank of partition
// q(v) at split coordinate c/R. The redistribution is therefore nvector whole-block
// point-to-point exchanges, nothing finer, and no data moves twice. Step k (a coordinate in
// the R box) pairs every rank with one sender and one receiver:
//
// Ratio = full[dim] / split[dim]
// send field q = (c%R + k)%R to full coordinate q*Ps + c/R
// recv sub-box o = (c/Ps - k)%R from full coordinate (c%Ps)*R + o
//
// For each dimension do an all to all; get Nvec -> Nvec / ratio
// Ldim -> Ldim * ratio
// LocalVol -> LocalVol * ratio
// full AllToAll(0)
// N0 va0 vb0 va1 vb1 N1 vc0 vd0 vc1 vd1
// N2 va2 vb2 va3 vb3 N3 vc2 vd2 vc3 vd3
// Within a step the send map is a permutation of the ranks and the receive map is its
// inverse, so each step is one symmetric SendToRecvFrom per rank; a rank paired with
// itself copies locally. Grid_unsplit runs the same steps with the roles exchanged.
//
// REARRANGE
// N0 va01 vb01 N1 vc01 vd01
// N2 va23 vb23 N3 vc23 vd23
//
// full AllToAll(1) // Not what is wanted. FIXME
// N0 va01 va23 N1 vc01 vc23
// N2 vb01 vb23 N3 vd01 vd23
//
// REARRANGE
// N0 va0123 N1 vc0123
// N2 vb0123 N3 vd0123
//
// Must also rearrange data to get into the NEW lex order of grid at each stage. Some kind of "insert/extract".
// NB: Easiest to programme if keep in lex order.
/*
* Let chunk = (fvol*nvec)/sP be size of a chunk. ( Divide lexico vol * nvec into fP/sP = M chunks )
*
* 2nd A2A (over sP nodes; subdivide the fP into sP chunks of M)
*
* node 0 1st chunk of node 0M..(1M-1); 2nd chunk of node 0M..(1M-1).. data chunk x M x sP = fL / sP * M * sP = fL * M growth
* node 1 1st chunk of node 1M..(2M-1); 2nd chunk of node 1M..(2M-1)..
* node 2 1st chunk of node 2M..(3M-1); 2nd chunk of node 2M..(3M-1)..
* node 3 1st chunk of node 3M..(3M-1); 2nd chunk of node 2M..(3M-1)..
* etc...
*/
// Data stays on the device. A block on the full grid is the local volume in lexicographic
// order; the split grid's local volume is staged box-major (sub-box index, then
// lexicographic within the sub-box), so every exchanged block is contiguous. Packing and
// unpacking are accelerator kernels. Buffers are deviceVectors: the staged split volume
// plus one block. Without ACCELERATOR_AWARE_MPI each block is staged through host memory.
/////////////////////////////////////////////////////////////////////////////////////////////
// Scalar sites of in, written to buf in box-major order: sub-boxes of extent bdims taken
// lexicographically, sites lexicographically within each. bdims = local dimensions gives
// plain lexicographic order.
template<class vobj>
void GridSplitUnvectorise(const Lattice<vobj> &in,typename vobj::scalar_object *buf,const Coordinate &bdims)
{
GridBase *grid = in.Grid();
int nd = grid->_ndimension;
Coordinate rdims = grid->_rdimensions;
Coordinate simd = grid->_simd_layout;
Coordinate nbox(nd);
int64_t bvol = 1;
for(int d=0;d<nd;d++){
GRID_ASSERT( (grid->_ldimensions[d] % bdims[d]) == 0 );
nbox[d] = grid->_ldimensions[d] / bdims[d];
bvol *= bdims[d];
}
const int Nsimd = grid->Nsimd();
autoView( in_v , in, AcceleratorRead);
accelerator_for(ss, grid->oSites(), 1, {
Coordinate ocoor(nd);
Coordinate icoor(nd);
Coordinate bcoor(nd);
Coordinate wcoor(nd);
Lexicographic::CoorFromIndex(ocoor,ss,rdims);
for(int lane=0;lane<Nsimd;lane++){
Lexicographic::CoorFromIndex(icoor,lane,simd);
for(int d=0;d<nd;d++){
int l = ocoor[d] + rdims[d]*icoor[d];
bcoor[d] = l / bdims[d];
wcoor[d] = l % bdims[d];
}
int64_t b;
int64_t w;
Lexicographic::IndexFromCoor(bcoor,b,nbox);
Lexicographic::IndexFromCoor(wcoor,w,bdims);
buf[b*bvol+w] = extractLane(lane,in_v[ss]);
}
});
}
// Inverse of GridSplitUnvectorise: every site of out is written
template<class vobj>
void GridSplitVectorise(const typename vobj::scalar_object *buf,Lattice<vobj> &out,const Coordinate &bdims)
{
GridBase *grid = out.Grid();
int nd = grid->_ndimension;
Coordinate rdims = grid->_rdimensions;
Coordinate simd = grid->_simd_layout;
Coordinate nbox(nd);
int64_t bvol = 1;
for(int d=0;d<nd;d++){
GRID_ASSERT( (grid->_ldimensions[d] % bdims[d]) == 0 );
nbox[d] = grid->_ldimensions[d] / bdims[d];
bvol *= bdims[d];
}
const int Nsimd = grid->Nsimd();
autoView( out_v , out, AcceleratorWriteDiscard);
accelerator_for(ss, grid->oSites(), 1, {
Coordinate ocoor(nd);
Coordinate icoor(nd);
Coordinate bcoor(nd);
Coordinate wcoor(nd);
Lexicographic::CoorFromIndex(ocoor,ss,rdims);
for(int lane=0;lane<Nsimd;lane++){
Lexicographic::CoorFromIndex(icoor,lane,simd);
for(int d=0;d<nd;d++){
int l = ocoor[d] + rdims[d]*icoor[d];
bcoor[d] = l / bdims[d];
wcoor[d] = l % bdims[d];
}
int64_t b;
int64_t w;
Lexicographic::IndexFromCoor(bcoor,b,nbox);
Lexicographic::IndexFromCoor(wcoor,w,bdims);
insertLane(lane,out_v[ss],buf[b*bvol+w]);
}
});
}
// Step schedule shared by Grid_split and Grid_unsplit; see the description above
class GridSplitSchedule
{
public:
int nd;
int nvector;
Coordinate ratio; // R
Coordinate fldims; // full grid local dimensions = sub-box extent on the split grid
GridBase *full_grid;
// Step k: this rank sends field Field(k) to rank FieldRank(k) and receives sub-box
// Box(k) from rank BoxRank(k) (Grid_split); Grid_unsplit reverses both
std::vector<int> Field;
std::vector<int> FieldRank;
std::vector<int> Box;
std::vector<int> BoxRank;
GridSplitSchedule(GridBase *_full_grid,GridBase *split_grid) : full_grid(_full_grid)
{
nd = full_grid->_ndimension;
GRID_ASSERT(split_grid->_ndimension == nd);
ratio.resize(nd);
fldims = full_grid->_ldimensions;
Coordinate sprocs = split_grid->_processors;
Coordinate fcoor = full_grid->_processor_coor;
nvector = 1;
for(int d=0;d<nd;d++){
GRID_ASSERT(full_grid->_gdimensions[d] == split_grid->_gdimensions[d]);
GRID_ASSERT(full_grid->_fdimensions[d] == split_grid->_fdimensions[d]);
GRID_ASSERT( (full_grid->_processors[d] % sprocs[d]) == 0 );
ratio[d] = full_grid->_processors[d] / sprocs[d];
GRID_ASSERT(split_grid->_ldimensions[d] == fldims[d]*ratio[d]);
nvector *= ratio[d];
}
GRID_ASSERT(nvector*split_grid->_Nprocessors == full_grid->_Nprocessors);
Field.resize(nvector);
FieldRank.resize(nvector);
Box.resize(nvector);
BoxRank.resize(nvector);
for(int k=0;k<nvector;k++){
Coordinate kc(nd);
Coordinate q(nd);
Coordinate dest(nd);
Coordinate o(nd);
Coordinate from(nd);
Lexicographic::CoorFromIndex(kc,k,ratio);
for(int d=0;d<nd;d++){
q[d] = (fcoor[d] % ratio[d] + kc[d]) % ratio[d];
dest[d] = q[d]*sprocs[d] + fcoor[d] / ratio[d];
o[d] = (fcoor[d] / sprocs[d] - kc[d] + ratio[d]) % ratio[d];
from[d] = (fcoor[d] % sprocs[d])*ratio[d] + o[d];
}
Lexicographic::IndexFromCoor(q,Field[k],ratio);
Lexicographic::IndexFromCoor(o,Box[k],ratio);
FieldRank[k] = full_grid->RankFromProcessorCoor(dest);
BoxRank[k] = full_grid->RankFromProcessorCoor(from);
}
}
// One step's exchange; returns the bytes that left this rank
uint64_t Exchange(void *xmit,int dest,void *recv,int from,uint64_t bytes)
{
int me = full_grid->ThisRank();
// The send map is a permutation and the receive map its inverse: self pairs with self
GRID_ASSERT( (dest == me) == (from == me) );
if ( dest == me ) {
acceleratorCopyDeviceToDevice(xmit,recv,bytes);
return 0;
}
GRID_ASSERT( (bytes % sizeof(int32_t)) == 0 );
GRID_ASSERT( bytes/sizeof(int32_t) < (1ULL<<31) ); // SendToRecvFrom counts int32 words
#ifdef ACCELERATOR_AWARE_MPI
full_grid->SendToRecvFrom(xmit,dest,recv,from,bytes);
#else
std::vector<char> hxmit(bytes);
std::vector<char> hrecv(bytes);
acceleratorCopyFromDevice(xmit,&hxmit[0],bytes);
full_grid->SendToRecvFrom(&hxmit[0],dest,&hrecv[0],from,bytes);
acceleratorCopyToDevice(&hrecv[0],recv,bytes);
#endif
return bytes;
}
};
// Common body: full[v] may alias one another (the single field overload)
template<class Vobj>
void Grid_split(std::vector<Lattice<Vobj> > & full,Lattice<Vobj> & split)
void Grid_split(const std::vector<const Lattice<Vobj> *> &full,Lattice<Vobj> &split)
{
typedef typename Vobj::scalar_object Sobj;
int full_vecs = full.size();
GRID_ASSERT(full_vecs>=1);
GridBase * full_grid = full[0].Grid();
GRID_ASSERT(full.size()>=1);
GridBase *full_grid = full[0]->Grid();
GridBase *split_grid = split.Grid();
int ndim = full_grid->_ndimension;
int full_nproc = full_grid->_Nprocessors;
int split_nproc =split_grid->_Nprocessors;
////////////////////////////////
// Checkerboard management
////////////////////////////////
int cb = full[0].Checkerboard();
int cb = full[0]->Checkerboard();
split.Checkerboard() = cb;
//////////////////////////////
// Checks
//////////////////////////////
GRID_ASSERT(full_grid->_ndimension==split_grid->_ndimension);
for(int n=0;n<full_vecs;n++){
GRID_ASSERT(full[n].Checkerboard() == cb);
for(int d=0;d<ndim;d++){
GRID_ASSERT(full[n].Grid()->_gdimensions[d]==split.Grid()->_gdimensions[d]);
GRID_ASSERT(full[n].Grid()->_fdimensions[d]==split.Grid()->_fdimensions[d]);
}
for(int n=0;n<full.size();n++){
GRID_ASSERT(full[n]->Grid() == full_grid);
GRID_ASSERT(full[n]->Checkerboard() == cb);
}
int nvector =full_nproc/split_nproc;
GRID_ASSERT(nvector*split_nproc==full_nproc);
GRID_ASSERT(nvector == full_vecs);
double t_start = usecond();
GridSplitSchedule sched(full_grid,split_grid);
GRID_ASSERT(sched.nvector == full.size());
Coordinate ratio(ndim);
for(int d=0;d<ndim;d++){
ratio[d] = full_grid->_processors[d]/ split_grid->_processors[d];
}
// Coarse phase timers, reported on GridLogPerformance
double t_start = usecond();
double t_d2h = 0;
double t_unvec = 0;
double t_a2a = 0;
double t_reorder = 0;
double t_vec = 0;
double t0;
uint64_t lsites = full_grid->lSites();
uint64_t sz = lsites * nvector;
std::vector<Sobj> tmpdata(sz);
std::vector<Sobj> alldata(sz);
std::vector<Sobj> scalardata(lsites);
uint64_t fvol = full_grid->lSites();
uint64_t bytes = fvol*sizeof(Sobj);
deviceVector<Sobj> staged(split_grid->lSites());
deviceVector<Sobj> block(fvol);
Sobj *staged_p = &staged[0];
Sobj *block_p = &block[0];
double t_alloc = usecond() - t_start;
for(int v=0;v<nvector;v++){
// Open and close a host view first so any device to host copy is timed on its own
t0 = usecond();
{
autoView(full_v, full[v], CpuRead);
}
t_d2h += usecond() - t0;
t0 = usecond();
unvectorizeToLexOrdArray(scalardata,full[v]);
thread_for(site,lsites,{
alldata[v*lsites+site] = scalardata[site];
});
t_unvec += usecond() - t0;
double t_pack = 0;
double t_comm = 0;
uint64_t offrank = 0;
for(int k=0;k<sched.nvector;k++){
double t0 = usecond();
GridSplitUnvectorise(*full[sched.Field[k]],block_p,full_grid->_ldimensions);
double t1 = usecond();
offrank += sched.Exchange((void *)block_p,sched.FieldRank[k],
(void *)&staged_p[sched.Box[k]*fvol],sched.BoxRank[k],bytes);
double t2 = usecond();
t_pack += t1-t0;
t_comm += t2-t1;
}
int nvec = nvector; // Counts down to 1 as we collapse dims
Coordinate ldims = full_grid->_ldimensions;
double t0 = usecond();
GridSplitVectorise(staged_p,split,sched.fldims);
double t_unpack = usecond() - t0;
double t_total = usecond() - t_start;
for(int d=ndim-1;d>=0;d--){
if ( ratio[d] != 1 ) {
t0 = usecond();
full_grid ->AllToAll(d,alldata,tmpdata);
if ( split_grid->_processors[d] > 1 ) {
alldata=tmpdata;
split_grid->AllToAll(d,alldata,tmpdata);
}
t_a2a += usecond() - t0;
t0 = usecond();
auto rdims = ldims;
auto M = ratio[d];
auto rsites= lsites*M;// increases rsites by M
nvec /= M; // Reduce nvec by subdivision factor
rdims[d] *= M; // increase local dim by same factor
int sP = split_grid->_processors[d];
int fP = full_grid->_processors[d];
int fvol = lsites;
int chunk = (nvec*fvol)/sP; GRID_ASSERT(chunk*sP == nvec*fvol);
// Loop over reordered data post A2A
thread_for(c, chunk, {
Coordinate coor(ndim);
for(int m=0;m<M;m++){
for(int s=0;s<sP;s++){
// addressing; use lexico
int lex_r;
uint64_t lex_c = c+chunk*m+chunk*M*s;
uint64_t lex_fvol_vec = c+chunk*s;
uint64_t lex_fvol = lex_fvol_vec%fvol;
uint64_t lex_vec = lex_fvol_vec/fvol;
// which node sets an adder to the coordinate
Lexicographic::CoorFromIndex(coor, lex_fvol, ldims);
coor[d] += m*ldims[d];
Lexicographic::IndexFromCoor(coor, lex_r, rdims);
lex_r += lex_vec * rsites;
// LexicoFind coordinate & vector number within split lattice
alldata[lex_r] = tmpdata[lex_c];
}
}
});
t_reorder += usecond() - t0;
ldims[d]*= ratio[d];
lsites *= ratio[d];
}
}
t0 = usecond();
vectorizeFromLexOrdArray(alldata,split);
t_vec = usecond() - t0;
double t_total = usecond() - t_start;
// Host to device copy of split happens lazily at its first accelerator use; not counted here
std::cout << GridLogPerformance << "Grid_split: " << nvector << " x " << sz/nvector*sizeof(Sobj)/1.0e6
std::cout << GridLogPerformance << "Grid_split: " << sched.nvector << " x " << bytes/1.0e6
<< " MB/rank total " << t_total/1.0e6 << " s : alloc " << t_alloc/1.0e6
<< " d2h " << t_d2h/1.0e6
<< " unvectorise " << t_unvec/1.0e6
<< " alltoall " << t_a2a/1.0e6
<< " reorder " << t_reorder/1.0e6
<< " vectorise " << t_vec/1.0e6 << std::endl;
// Staging vectors are still live here, so this is the high-water point of the call
<< " pack " << t_pack/1.0e6
<< " exchange " << t_comm/1.0e6 << " (" << offrank/1.0e6 << " MB off rank, "
<< offrank/(t_comm+1.0e-9)/1.0e3 << " GB/s)"
<< " unpack " << t_unpack/1.0e6 << std::endl;
// Staging buffers are still live here, so this is the high-water point of the call
if ( GridLogPerformance.isActive() ) {
HostMemoryReport(full_grid,GridLogPerformance,"Grid_split");
}
}
template<class Vobj>
void Grid_split(std::vector<Lattice<Vobj> > & full,Lattice<Vobj> & split)
{
std::vector<const Lattice<Vobj> *> full_p(full.size());
for(int n=0;n<full.size();n++){
full_p[n] = &full[n];
}
Grid_split(full_p,split);
}
// The same field to every partition
template<class Vobj>
void Grid_split(Lattice<Vobj> &full,Lattice<Vobj> & split)
{
int nvector = full.Grid()->_Nprocessors / split.Grid()->_Nprocessors;
std::vector<Lattice<Vobj> > full_v(nvector,full.Grid());
for(int n=0;n<nvector;n++){
full_v[n] = full;
}
Grid_split(full_v,split);
std::vector<const Lattice<Vobj> *> full_p(nvector,&full);
Grid_split(full_p,split);
}
template<class Vobj>
@@ -1763,154 +1828,55 @@ void Grid_unsplit(std::vector<Lattice<Vobj> > & full,Lattice<Vobj> & split)
{
typedef typename Vobj::scalar_object Sobj;
int full_vecs = full.size();
GRID_ASSERT(full_vecs>=1);
GridBase * full_grid = full[0].Grid();
GRID_ASSERT(full.size()>=1);
GridBase *full_grid = full[0].Grid();
GridBase *split_grid = split.Grid();
int ndim = full_grid->_ndimension;
int full_nproc = full_grid->_Nprocessors;
int split_nproc =split_grid->_Nprocessors;
////////////////////////////////
// Checkerboard management
////////////////////////////////
int cb = full[0].Checkerboard();
split.Checkerboard() = cb;
//////////////////////////////
// Checks
//////////////////////////////
GRID_ASSERT(full_grid->_ndimension==split_grid->_ndimension);
for(int n=0;n<full_vecs;n++){
for(int n=0;n<full.size();n++){
GRID_ASSERT(full[n].Grid() == full_grid);
GRID_ASSERT(full[n].Checkerboard() == cb);
for(int d=0;d<ndim;d++){
GRID_ASSERT(full[n].Grid()->_gdimensions[d]==split.Grid()->_gdimensions[d]);
GRID_ASSERT(full[n].Grid()->_fdimensions[d]==split.Grid()->_fdimensions[d]);
}
}
int nvector =full_nproc/split_nproc;
GRID_ASSERT(nvector*split_nproc==full_nproc);
GRID_ASSERT(nvector == full_vecs);
double t_start = usecond();
GridSplitSchedule sched(full_grid,split_grid);
GRID_ASSERT(sched.nvector == full.size());
Coordinate ratio(ndim);
for(int d=0;d<ndim;d++){
ratio[d] = full_grid->_processors[d]/ split_grid->_processors[d];
}
// Coarse phase timers, reported on GridLogPerformance
double t_start = usecond();
double t_a2a = 0;
double t_reorder = 0;
double t_vec = 0;
double t0;
uint64_t lsites = full_grid->lSites();
uint64_t sz = lsites * nvector;
std::vector<Sobj> tmpdata(sz);
std::vector<Sobj> alldata(sz);
std::vector<Sobj> scalardata(lsites);
uint64_t fvol = full_grid->lSites();
uint64_t bytes = fvol*sizeof(Sobj);
deviceVector<Sobj> staged(split_grid->lSites());
deviceVector<Sobj> block(fvol);
Sobj *staged_p = &staged[0];
Sobj *block_p = &block[0];
double t_alloc = usecond() - t_start;
// Open and close a host view first so any device to host copy is timed on its own
t0 = usecond();
{
autoView(split_v, split, CpuRead);
double t0 = usecond();
GridSplitUnvectorise(split,staged_p,sched.fldims);
double t_pack = usecond() - t0;
double t_comm = 0;
double t_unpack = 0;
uint64_t offrank = 0;
for(int k=0;k<sched.nvector;k++){
double t1 = usecond();
offrank += sched.Exchange((void *)&staged_p[sched.Box[k]*fvol],sched.BoxRank[k],
(void *)block_p,sched.FieldRank[k],bytes);
double t2 = usecond();
GridSplitVectorise(block_p,full[sched.Field[k]],full_grid->_ldimensions);
double t3 = usecond();
t_comm += t2-t1;
t_unpack += t3-t2;
}
double t_d2h = usecond() - t0;
t0 = usecond();
unvectorizeToLexOrdArray(alldata,split);
double t_unvec = usecond() - t0;
/////////////////////////////////////////////////////////////////
// Start from split grid and work towards full grid
/////////////////////////////////////////////////////////////////
int nvec = 1;
uint64_t rsites = split_grid->lSites();
Coordinate rdims = split_grid->_ldimensions;
for(int d=0;d<ndim;d++){
if ( ratio[d] != 1 ) {
auto M = ratio[d];
int sP = split_grid->_processors[d];
int fP = full_grid->_processors[d];
auto ldims = rdims; ldims[d] /= M; // Decrease local dims by same factor
auto lsites= rsites/M; // Decreases rsites by M
int fvol = lsites;
int chunk = (nvec*fvol)/sP; GRID_ASSERT(chunk*sP == nvec*fvol);
t0 = usecond();
{
// Loop over reordered data post A2A
thread_for(c, chunk,{
Coordinate coor(ndim);
for(int m=0;m<M;m++){
for(int s=0;s<sP;s++){
// addressing; use lexico
int lex_r;
uint64_t lex_c = c+chunk*m+chunk*M*s;
uint64_t lex_fvol_vec = c+chunk*s;
uint64_t lex_fvol = lex_fvol_vec%fvol;
uint64_t lex_vec = lex_fvol_vec/fvol;
// which node sets an adder to the coordinate
Lexicographic::CoorFromIndex(coor, lex_fvol, ldims);
coor[d] += m*ldims[d];
Lexicographic::IndexFromCoor(coor, lex_r, rdims);
lex_r += lex_vec * rsites;
// LexicoFind coordinate & vector number within split lattice
tmpdata[lex_c] = alldata[lex_r];
}
}
});
}
t_reorder += usecond() - t0;
t0 = usecond();
if ( split_grid->_processors[d] > 1 ) {
split_grid->AllToAll(d,tmpdata,alldata);
tmpdata=alldata;
}
full_grid ->AllToAll(d,tmpdata,alldata);
t_a2a += usecond() - t0;
rdims[d]/= M;
rsites /= M;
nvec *= M; // Increase nvec by subdivision factor
}
}
t0 = usecond();
lsites = full_grid->lSites();
for(int v=0;v<nvector;v++){
thread_for(site, lsites,{
scalardata[site] = alldata[v*lsites+site];
});
vectorizeFromLexOrdArray(scalardata,full[v]);
}
t_vec = usecond() - t0;
double t_total = usecond() - t_start;
// Host to device copies of full happen lazily at their first accelerator use; not counted here
std::cout << GridLogPerformance << "Grid_unsplit: " << nvector << " x " << sz/nvector*sizeof(Sobj)/1.0e6
std::cout << GridLogPerformance << "Grid_unsplit: " << sched.nvector << " x " << bytes/1.0e6
<< " MB/rank total " << t_total/1.0e6 << " s : alloc " << t_alloc/1.0e6
<< " d2h " << t_d2h/1.0e6
<< " unvectorise " << t_unvec/1.0e6
<< " alltoall " << t_a2a/1.0e6
<< " reorder " << t_reorder/1.0e6
<< " vectorise " << t_vec/1.0e6 << std::endl;
// Staging vectors are still live here, so this is the high-water point of the call
<< " pack " << t_pack/1.0e6
<< " exchange " << t_comm/1.0e6 << " (" << offrank/1.0e6 << " MB off rank, "
<< offrank/(t_comm+1.0e-9)/1.0e3 << " GB/s)"
<< " unpack " << t_unpack/1.0e6 << std::endl;
// Staging buffers are still live here, so this is the high-water point of the call
if ( GridLogPerformance.isActive() ) {
HostMemoryReport(full_grid,GridLogPerformance,"Grid_unsplit");
}
+6 -8
View File
@@ -56,14 +56,12 @@ int main (int argc, char ** argv)
/////////////////////////////////////////////
// Split into 1^4 mpi communicators
/////////////////////////////////////////////
for(int i=0;i<argc;i++){
if(std::string(argv[i]) == "--split"){
for(int k=0;k<mpi_layout.size();k++){
std::stringstream ss;
ss << argv[i+1+k];
ss >> mpi_split[k];
}
break;
if ( GridCmdOptionExists(argv,argv+argc,"--split") ) {
std::vector<int> split;
GridCmdOptionIntVector(GridCmdOptionPayload(argv,argv+argc,"--split"),split);
GRID_ASSERT(split.size() == mpi_layout.size());
for(int k=0;k<mpi_layout.size();k++){
mpi_split[k] = split[k];
}
}
+6 -8
View File
@@ -59,14 +59,12 @@ int main (int argc, char ** argv)
// Split into 1^4 mpi communicators
/////////////////////////////////////////////
for(int i=0;i<argc;i++){
if(std::string(argv[i]) == "--split"){
for(int k=0;k<mpi_layout.size();k++){
std::stringstream ss;
ss << argv[i+1+k];
ss >> mpi_split[k];
}
break;
if ( GridCmdOptionExists(argv,argv+argc,"--split") ) {
std::vector<int> split;
GridCmdOptionIntVector(GridCmdOptionPayload(argv,argv+argc,"--split"),split);
GRID_ASSERT(split.size() == mpi_layout.size());
for(int k=0;k<mpi_layout.size();k++){
mpi_split[k] = split[k];
}
}
+6 -8
View File
@@ -63,14 +63,12 @@ int main (int argc, char ** argv)
// Split into 1^4 mpi communicators
/////////////////////////////////////////////
for(int i=0;i<argc;i++){
if(std::string(argv[i]) == "--split"){
for(int k=0;k<mpi_layout.size();k++){
std::stringstream ss;
ss << argv[i+1+k];
ss >> mpi_split[k];
}
break;
if ( GridCmdOptionExists(argv,argv+argc,"--split") ) {
std::vector<int> split;
GridCmdOptionIntVector(GridCmdOptionPayload(argv,argv+argc,"--split"),split);
GRID_ASSERT(split.size() == mpi_layout.size());
for(int k=0;k<mpi_layout.size();k++){
mpi_split[k] = split[k];
}
}
+6 -8
View File
@@ -56,14 +56,12 @@ int main (int argc, char ** argv)
// Split into 1^4 mpi communicators
/////////////////////////////////////////////
for(int i=0;i<argc;i++){
if(std::string(argv[i]) == "--split"){
for(int k=0;k<mpi_layout.size();k++){
std::stringstream ss;
ss << argv[i+1+k];
ss >> mpi_split[k];
}
break;
if ( GridCmdOptionExists(argv,argv+argc,"--split") ) {
std::vector<int> split;
GridCmdOptionIntVector(GridCmdOptionPayload(argv,argv+argc,"--split"),split);
GRID_ASSERT(split.size() == mpi_layout.size());
for(int k=0;k<mpi_layout.size();k++){
mpi_split[k] = split[k];
}
}
+13 -10
View File
@@ -145,16 +145,19 @@ void CheckSplitBatched(const std::string &name,
sol_split[i] = Zero();
}
MixedPrecisionConjugateGradientBatched<FieldD,FieldF> mCG(TOLERANCE,10000,50,1000,grid_f,Linop_f,Linop_d);
std::cout << GridLogMessage << name << ": unsplit batched solve" << std::endl;
mCG.BatchedSplit = Coordinate();
mCG.BatchedSplitNode = false;
mCG(src,sol_ref);
std::cout << GridLogMessage << name << ": split batched solve, partition layout " << layout << std::endl;
mCG.BatchedSplit = layout;
mCG(src,sol_split);
{
std::cout << GridLogMessage << name << ": unsplit batched solve" << std::endl;
MixedPrecisionConjugateGradientBatched<FieldD,FieldF> mCG(TOLERANCE,10000,50,1000,grid_f,Linop_f,Linop_d,
true,Coordinate(),false);
mCG(src,sol_ref);
}
{
std::cout << GridLogMessage << name << ": split batched solve, partition layout " << layout << std::endl;
MixedPrecisionConjugateGradientBatched<FieldD,FieldF> mCG(TOLERANCE,10000,50,1000,grid_f,Linop_f,Linop_d,
true,layout,false);
GRID_ASSERT( (mCG.Partitions == 1) || (mCG.split != nullptr) );
mCG(src,sol_split);
}
FieldD Msol(src[0].Grid());
Msol.Checkerboard() = cb;
+12 -13
View File
@@ -213,25 +213,24 @@ int main (int argc, char ** argv)
ReportMemory(UGrid_d,"operators and sources ready");
MixedPrecisionConjugateGradientBatched<FieldD,FieldF> mCG(tol,10000,50,10000,FrbGrid_f,Linop_f,Linop_d);
Coordinate split = mCG.BatchedSplit;
bool splitnode = mCG.BatchedSplitNode;
if ( unsplit ) {
mCG.BatchedSplit = Coordinate();
mCG.BatchedSplitNode = false;
MixedPrecisionConjugateGradientBatched<FieldD,FieldF> mCG(tol,10000,50,10000,FrbGrid_f,Linop_f,Linop_d,
true,Coordinate(),false);
SolveAndReport("UNSPLIT",mCG,Linop_d,src,sol);
ReportMemory(UGrid_d,"after unsplit solve");
}
mCG.BatchedSplit = split;
mCG.BatchedSplitNode = splitnode;
// Repeated split solves expose allocations not released between calls
for(int r=0;r<repeat;r++){
SolveAndReport("SPLIT",mCG,Linop_d,src,sol);
ReportMemory(UGrid_d,"after split solve "+std::to_string(r));
if ( repeat > 0 ) {
// Split layout from the command line; the split operator is cloned here, once
MixedPrecisionConjugateGradientBatched<FieldD,FieldF> mCG(tol,10000,50,10000,FrbGrid_f,Linop_f,Linop_d);
ReportMemory(UGrid_d,"after split solver construction");
// Repeated split solves reuse the clone and expose allocations not released between calls
for(int r=0;r<repeat;r++){
SolveAndReport("SPLIT",mCG,Linop_d,src,sol);
ReportMemory(UGrid_d,"after split solve "+std::to_string(r));
}
}
ReportMemory(UGrid_d,"after split solver destruction");
Grid_finalize();
}