Remove extra face kernels in Dirichlet

14TF/s on a Perlmutter node

Grid/DisableWarnings.h

@@ -44,14 +44,22 @@ directory
 #ifdef __NVCC__
  //disables nvcc specific warning in json.hpp
 #pragma clang diagnostic ignored "-Wdeprecated-register"
+
+#if (__CUDACC_VER_MAJOR__ >= 11) && (__CUDACC_VER_MINOR__ >= 5)
+ //disables nvcc specific warning in json.hpp
+#pragma nv_diag_suppress unsigned_compare_with_zero
+#pragma nv_diag_suppress cast_to_qualified_type
+ //disables nvcc specific warning in many files
+#pragma nv_diag_suppress esa_on_defaulted_function_ignored
+#pragma nv_diag_suppress extra_semicolon
+#else
+ //disables nvcc specific warning in json.hpp
 #pragma diag_suppress unsigned_compare_with_zero
 #pragma diag_suppress cast_to_qualified_type
-
  //disables nvcc specific warning in many files
 #pragma diag_suppress esa_on_defaulted_function_ignored
 #pragma diag_suppress extra_semicolon
-
+#endif
-//Eigen only
 #endif
 
 // Disable vectorisation in Eigen on the Power8/9 and PowerPC

Grid/GridStd.h

@@ -16,6 +16,7 @@
 #include <functional>
 #include <stdio.h>
 #include <stdlib.h>
+#include <strings.h>
 #include <stdio.h>
 #include <signal.h>
 #include <ctime>

Grid/Grid_Eigen_Dense.h

@@ -14,7 +14,11 @@
 /* NVCC save and restore compile environment*/
 #ifdef __NVCC__
 #pragma push
+#if (__CUDACC_VER_MAJOR__ >= 11) && (__CUDACC_VER_MINOR__ >= 5)
+#pragma nv_diag_suppress code_is_unreachable
+#else
 #pragma diag_suppress code_is_unreachable
+#endif
 #pragma push_macro("__CUDA_ARCH__")
 #pragma push_macro("__NVCC__")
 #pragma push_macro("__CUDACC__")

Grid/algorithms/iterative/Deflation.h

@@ -113,7 +113,43 @@ public:
     blockPromote(guess_coarse,guess,subspace);
     guess.Checkerboard() = src.Checkerboard();
   };
-};
+
+  void operator()(const std::vector<FineField> &src,std::vector<FineField> &guess) {
+    int Nevec = (int)evec_coarse.size();
+    int Nsrc = (int)src.size();
+    // make temp variables
+    std::vector<CoarseField> src_coarse(Nsrc,evec_coarse[0].Grid());
+    std::vector<CoarseField> guess_coarse(Nsrc,evec_coarse[0].Grid());    
+    //Preporcessing
+    std::cout << GridLogMessage << "Start BlockProject for loop" << std::endl;
+    for (int j=0;j<Nsrc;j++)
+    {
+    guess_coarse[j] = Zero();
+    std::cout << GridLogMessage << "BlockProject iter: " << j << std::endl;
+    blockProject(src_coarse[j],src[j],subspace);
+    }
+    //deflation set up for eigen vector batchsize 1 and source batch size equal number of sources
+    std::cout << GridLogMessage << "Start ProjectAccum for loop" << std::endl;
+    for (int i=0;i<Nevec;i++)
+    {
+      std::cout << GridLogMessage << "ProjectAccum Nvec: " << i << std::endl;
+      const CoarseField & tmp = evec_coarse[i];
+      for (int j=0;j<Nsrc;j++)
+      {
+        axpy(guess_coarse[j],TensorRemove(innerProduct(tmp,src_coarse[j])) / eval_coarse[i],tmp,guess_coarse[j]);
+      }
+    }
+    //postprocessing
+    std::cout << GridLogMessage << "Start BlockPromote for loop" << std::endl;
+    for (int j=0;j<Nsrc;j++)
+    {
+    std::cout << GridLogMessage << "BlockProject iter: " << j << std::endl;
+    blockPromote(guess_coarse[j],guess[j],subspace);
+    guess[j].Checkerboard() = src[j].Checkerboard();
+    }
+  };
+
+  };
 
 
 

Grid/communicator/Communicator_base.h

@@ -53,10 +53,11 @@ public:
   // Communicator should know nothing of the physics grid, only processor grid.
   ////////////////////////////////////////////
   int              _Nprocessors;     // How many in all
-  Coordinate _processors;      // Which dimensions get relayed out over processors lanes.
   int              _processor;       // linear processor rank
-  Coordinate _processor_coor;  // linear processor coordinate
   unsigned long    _ndimension;
+  Coordinate _shm_processors;  // Which dimensions get relayed out over processors lanes.
+  Coordinate _processors;      // Which dimensions get relayed out over processors lanes.
+  Coordinate _processor_coor;  // linear processor coordinate
   static Grid_MPI_Comm      communicator_world;
   Grid_MPI_Comm             communicator;
   std::vector<Grid_MPI_Comm> communicator_halo;
@@ -97,8 +98,9 @@ public:
   int                      BossRank(void)          ;
   int                      ThisRank(void)          ;
   const Coordinate & ThisProcessorCoor(void) ;
+  const Coordinate & ShmGrid(void)  { return _shm_processors; }  ;
   const Coordinate & ProcessorGrid(void)     ;
-  int                      ProcessorCount(void)    ;
+  int                ProcessorCount(void)    ;
 
   ////////////////////////////////////////////////////////////////////////////////
   // very VERY rarely (Log, serial RNG) we need world without a grid
@@ -142,16 +144,16 @@ public:
 		      int bytes);
   
   double StencilSendToRecvFrom(void *xmit,
-			       int xmit_to_rank,
+			       int xmit_to_rank,int do_xmit,
 			       void *recv,
-			       int recv_from_rank,
+			       int recv_from_rank,int do_recv,
 			       int bytes,int dir);
 
   double StencilSendToRecvFromBegin(std::vector<CommsRequest_t> &list,
 				    void *xmit,
-				    int xmit_to_rank,
+				    int xmit_to_rank,int do_xmit,
 				    void *recv,
-				    int recv_from_rank,
+				    int recv_from_rank,int do_recv,
 				    int bytes,int dir);
   
   

Grid/communicator/Communicator_mpi3.cc

@@ -106,7 +106,7 @@ CartesianCommunicator::CartesianCommunicator(const Coordinate &processors)
   // Remap using the shared memory optimising routine
   // The remap creates a comm which must be freed
   ////////////////////////////////////////////////////
-  GlobalSharedMemory::OptimalCommunicator    (processors,optimal_comm);
+  GlobalSharedMemory::OptimalCommunicator    (processors,optimal_comm,_shm_processors);
   InitFromMPICommunicator(processors,optimal_comm);
   SetCommunicator(optimal_comm);
   ///////////////////////////////////////////////////
@@ -124,12 +124,13 @@ CartesianCommunicator::CartesianCommunicator(const Coordinate &processors,const
   int parent_ndimension = parent._ndimension; assert(_ndimension >= parent._ndimension);
   Coordinate parent_processor_coor(_ndimension,0);
   Coordinate parent_processors    (_ndimension,1);
-
+  Coordinate shm_processors       (_ndimension,1);
   // Can make 5d grid from 4d etc...
   int pad = _ndimension-parent_ndimension;
   for(int d=0;d<parent_ndimension;d++){
     parent_processor_coor[pad+d]=parent._processor_coor[d];
     parent_processors    [pad+d]=parent._processors[d];
+    shm_processors       [pad+d]=parent._shm_processors[d];
   }
 
   //////////////////////////////////////////////////////////////////////////////////////////////////////
@@ -154,6 +155,7 @@ CartesianCommunicator::CartesianCommunicator(const Coordinate &processors,const
     ccoor[d] = parent_processor_coor[d] % processors[d];
     scoor[d] = parent_processor_coor[d] / processors[d];
     ssize[d] = parent_processors[d]     / processors[d];
+    if ( processors[d] < shm_processors[d] ) shm_processors[d] = processors[d]; // subnode splitting.
   }
 
   // rank within subcomm ; srank is rank of subcomm within blocks of subcomms
@@ -335,22 +337,22 @@ void CartesianCommunicator::SendToRecvFrom(void *xmit,
 }
 // Basic Halo comms primitive
 double CartesianCommunicator::StencilSendToRecvFrom( void *xmit,
-						     int dest,
+						     int dest, int dox,
 						     void *recv,
-						     int from,
+						     int from, int dor,
 						     int bytes,int dir)
 {
   std::vector<CommsRequest_t> list;
-  double offbytes = StencilSendToRecvFromBegin(list,xmit,dest,recv,from,bytes,dir);
+  double offbytes = StencilSendToRecvFromBegin(list,xmit,dest,dox,recv,from,dor,bytes,dir);
   StencilSendToRecvFromComplete(list,dir);
   return offbytes;
 }
 
 double CartesianCommunicator::StencilSendToRecvFromBegin(std::vector<CommsRequest_t> &list,
 							 void *xmit,
-							 int dest,
+							 int dest,int dox,
 							 void *recv,
-							 int from,
+							 int from,int dor,
 							 int bytes,int dir)
 {
   int ncomm  =communicator_halo.size();
@@ -370,30 +372,33 @@ double CartesianCommunicator::StencilSendToRecvFromBegin(std::vector<CommsReques
   double off_node_bytes=0.0;
   int tag;
 
-  if ( (gfrom ==MPI_UNDEFINED) || Stencil_force_mpi ) {
+  if ( dox ) {
-    tag= dir+from*32;
+    if ( (gfrom ==MPI_UNDEFINED) || Stencil_force_mpi ) {
-    ierr=MPI_Irecv(recv, bytes, MPI_CHAR,from,tag,communicator_halo[commdir],&rrq);
+      tag= dir+from*32;
-    assert(ierr==0);
+      ierr=MPI_Irecv(recv, bytes, MPI_CHAR,from,tag,communicator_halo[commdir],&rrq);
-    list.push_back(rrq);
+      assert(ierr==0);
-    off_node_bytes+=bytes;
+      list.push_back(rrq);
+      off_node_bytes+=bytes;
+    }
   }
-
+  
-  if ( (gdest == MPI_UNDEFINED) || Stencil_force_mpi ) {
+  if (dor) {
-    tag= dir+_processor*32;
+    if ( (gdest == MPI_UNDEFINED) || Stencil_force_mpi ) {
-    ierr =MPI_Isend(xmit, bytes, MPI_CHAR,dest,tag,communicator_halo[commdir],&xrq);
+      tag= dir+_processor*32;
-    assert(ierr==0);
+      ierr =MPI_Isend(xmit, bytes, MPI_CHAR,dest,tag,communicator_halo[commdir],&xrq);
-    list.push_back(xrq);
+      assert(ierr==0);
-    off_node_bytes+=bytes;
+      list.push_back(xrq);
-  } else {
+      off_node_bytes+=bytes;
-    // TODO : make a OMP loop on CPU, call threaded bcopy
+    } else {
-    void *shm = (void *) this->ShmBufferTranslate(dest,recv);
+      void *shm = (void *) this->ShmBufferTranslate(dest,recv);
-    assert(shm!=NULL);
+      assert(shm!=NULL);
-    //    std::cout <<"acceleratorCopyDeviceToDeviceAsynch"<< std::endl;
+      acceleratorCopyDeviceToDeviceAsynch(xmit,shm,bytes);
-    acceleratorCopyDeviceToDeviceAsynch(xmit,shm,bytes);
+    }
   }
-
+  
   if ( CommunicatorPolicy == CommunicatorPolicySequential ) {
     this->StencilSendToRecvFromComplete(list,dir);
+    list.resize(0);
   }
 
   return off_node_bytes;

Grid/communicator/Communicator_none.cc

@@ -45,12 +45,14 @@ void CartesianCommunicator::Init(int *argc, char *** arv)
 CartesianCommunicator::CartesianCommunicator(const Coordinate &processors,const CartesianCommunicator &parent,int &srank) 
   : CartesianCommunicator(processors) 
 {
+  _shm_processors = Coordinate(processors.size(),1);
   srank=0;
   SetCommunicator(communicator_world);
 }
 
 CartesianCommunicator::CartesianCommunicator(const Coordinate &processors)
 {
+  _shm_processors = Coordinate(processors.size(),1);
   _processors = processors;
   _ndimension = processors.size();  assert(_ndimension>=1);
   _processor_coor.resize(_ndimension);
@@ -111,18 +113,18 @@ void CartesianCommunicator::ShiftedRanks(int dim,int shift,int &source,int &dest
 }
 
 double CartesianCommunicator::StencilSendToRecvFrom( void *xmit,
-						     int xmit_to_rank,
+						     int xmit_to_rank,int dox,
 						     void *recv,
-						     int recv_from_rank,
+						     int recv_from_rank,int dor,
 						     int bytes, int dir)
 {
   return 2.0*bytes;
 }
 double CartesianCommunicator::StencilSendToRecvFromBegin(std::vector<CommsRequest_t> &list,
 							 void *xmit,
-							 int xmit_to_rank,
+							 int xmit_to_rank,int dox,
 							 void *recv,
-							 int recv_from_rank,
+							 int recv_from_rank,int dor,
 							 int bytes, int dir)
 {
   return 2.0*bytes;

Grid/communicator/SharedMemory.h

@@ -93,9 +93,10 @@ public:
   // Create an optimal reordered communicator that makes MPI_Cart_create get it right
   //////////////////////////////////////////////////////////////////////////////////////
   static void Init(Grid_MPI_Comm comm); // Typically MPI_COMM_WORLD
-  static void OptimalCommunicator            (const Coordinate &processors,Grid_MPI_Comm & optimal_comm);  // Turns MPI_COMM_WORLD into right layout for Cartesian
+  // Turns MPI_COMM_WORLD into right layout for Cartesian
-  static void OptimalCommunicatorHypercube   (const Coordinate &processors,Grid_MPI_Comm & optimal_comm);  // Turns MPI_COMM_WORLD into right layout for Cartesian
+  static void OptimalCommunicator            (const Coordinate &processors,Grid_MPI_Comm & optimal_comm,Coordinate &ShmDims); 
-  static void OptimalCommunicatorSharedMemory(const Coordinate &processors,Grid_MPI_Comm & optimal_comm);  // Turns MPI_COMM_WORLD into right layout for Cartesian
+  static void OptimalCommunicatorHypercube   (const Coordinate &processors,Grid_MPI_Comm & optimal_comm,Coordinate &ShmDims); 
+  static void OptimalCommunicatorSharedMemory(const Coordinate &processors,Grid_MPI_Comm & optimal_comm,Coordinate &ShmDims); 
   static void GetShmDims(const Coordinate &WorldDims,Coordinate &ShmDims);
   ///////////////////////////////////////////////////
   // Provide shared memory facilities off comm world

Grid/communicator/SharedMemoryMPI.cc

@@ -152,7 +152,7 @@ int Log2Size(int TwoToPower,int MAXLOG2)
   }
   return log2size;
 }
-void GlobalSharedMemory::OptimalCommunicator(const Coordinate &processors,Grid_MPI_Comm & optimal_comm)
+void GlobalSharedMemory::OptimalCommunicator(const Coordinate &processors,Grid_MPI_Comm & optimal_comm,Coordinate &SHM)
 {
   //////////////////////////////////////////////////////////////////////////////
   // Look and see if it looks like an HPE 8600 based on hostname conventions
@@ -165,8 +165,8 @@ void GlobalSharedMemory::OptimalCommunicator(const Coordinate &processors,Grid_M
   gethostname(name,namelen);
   int nscan = sscanf(name,"r%di%dn%d",&R,&I,&N) ;
 
-  if(nscan==3 && HPEhypercube ) OptimalCommunicatorHypercube(processors,optimal_comm);
+  if(nscan==3 && HPEhypercube ) OptimalCommunicatorHypercube(processors,optimal_comm,SHM);
-  else                          OptimalCommunicatorSharedMemory(processors,optimal_comm);
+  else                          OptimalCommunicatorSharedMemory(processors,optimal_comm,SHM);
 }
 static inline int divides(int a,int b)
 {
@@ -221,7 +221,7 @@ void GlobalSharedMemory::GetShmDims(const Coordinate &WorldDims,Coordinate &ShmD
     dim=(dim+1) %ndimension;
   }
 }
-void GlobalSharedMemory::OptimalCommunicatorHypercube(const Coordinate &processors,Grid_MPI_Comm & optimal_comm)
+void GlobalSharedMemory::OptimalCommunicatorHypercube(const Coordinate &processors,Grid_MPI_Comm & optimal_comm,Coordinate &SHM)
 {
   ////////////////////////////////////////////////////////////////
   // Assert power of two shm_size.
@@ -294,7 +294,8 @@ void GlobalSharedMemory::OptimalCommunicatorHypercube(const Coordinate &processo
   Coordinate HyperCoor(ndimension);
 
   GetShmDims(WorldDims,ShmDims);
-
+  SHM = ShmDims;
+  
   ////////////////////////////////////////////////////////////////
   // Establish torus of processes and nodes with sub-blockings
   ////////////////////////////////////////////////////////////////
@@ -341,7 +342,7 @@ void GlobalSharedMemory::OptimalCommunicatorHypercube(const Coordinate &processo
   int ierr= MPI_Comm_split(WorldComm,0,rank,&optimal_comm);
   assert(ierr==0);
 }
-void GlobalSharedMemory::OptimalCommunicatorSharedMemory(const Coordinate &processors,Grid_MPI_Comm & optimal_comm)
+void GlobalSharedMemory::OptimalCommunicatorSharedMemory(const Coordinate &processors,Grid_MPI_Comm & optimal_comm,Coordinate &SHM)
 {
   ////////////////////////////////////////////////////////////////
   // Identify subblock of ranks on node spreading across dims
@@ -353,6 +354,8 @@ void GlobalSharedMemory::OptimalCommunicatorSharedMemory(const Coordinate &proce
   Coordinate ShmCoor(ndimension);    Coordinate NodeCoor(ndimension);   Coordinate WorldCoor(ndimension);
 
   GetShmDims(WorldDims,ShmDims);
+  SHM=ShmDims;
+
   ////////////////////////////////////////////////////////////////
   // Establish torus of processes and nodes with sub-blockings
   ////////////////////////////////////////////////////////////////

Grid/communicator/SharedMemoryNone.cc

@@ -48,9 +48,10 @@ void GlobalSharedMemory::Init(Grid_MPI_Comm comm)
   _ShmSetup=1;
 }
 
-void GlobalSharedMemory::OptimalCommunicator(const Coordinate &processors,Grid_MPI_Comm & optimal_comm)
+void GlobalSharedMemory::OptimalCommunicator(const Coordinate &processors,Grid_MPI_Comm & optimal_comm,Coordinate &SHM)
 {
   optimal_comm = WorldComm;
+  SHM = Coordinate(processors.size(),1);
 }
 
 ////////////////////////////////////////////////////////////////////////////////////////////

Grid/lattice/Lattice.h

@@ -46,3 +46,4 @@ Author: Peter Boyle <paboyle@ph.ed.ac.uk>
 #include <Grid/lattice/Lattice_unary.h>
 #include <Grid/lattice/Lattice_transfer.h>
 #include <Grid/lattice/Lattice_basis.h>
+#include <Grid/lattice/Lattice_crc.h>

Grid/lattice/Lattice_crc.h

@@ -0,0 +1,55 @@
+/*************************************************************************************
+
+    Grid physics library, www.github.com/paboyle/Grid 
+
+    Source file: ./lib/lattice/Lattice_crc.h
+
+    Copyright (C) 2021
+
+Author: Peter Boyle <paboyle@ph.ed.ac.uk>
+
+    This program is free software; you can redistribute it and/or modify
+    it under the terms of the GNU General Public License as published by
+    the Free Software Foundation; either version 2 of the License, or
+    (at your option) any later version.
+
+    This program is distributed in the hope that it will be useful,
+    but WITHOUT ANY WARRANTY; without even the implied warranty of
+    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+    GNU General Public License for more details.
+
+    You should have received a copy of the GNU General Public License along
+    with this program; if not, write to the Free Software Foundation, Inc.,
+    51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
+
+    See the full license in the file "LICENSE" in the top level distribution directory
+*************************************************************************************/
+/*  END LEGAL */
+#pragma once
+
+NAMESPACE_BEGIN(Grid);
+
+template<class vobj> void DumpSliceNorm(std::string s,Lattice<vobj> &f,int mu=-1)
+{
+  auto ff = localNorm2(f);
+  if ( mu==-1 ) mu = f.Grid()->Nd()-1;
+  typedef typename vobj::tensor_reduced normtype;
+  typedef typename normtype::scalar_object scalar;
+  std::vector<scalar> sff;
+  sliceSum(ff,sff,mu);
+  for(int t=0;t<sff.size();t++){
+    std::cout << s<<" "<<t<<" "<<sff[t]<<std::endl;
+  }
+}
+
+template<class vobj> uint32_t crc(Lattice<vobj> & buf)
+{
+  autoView( buf_v , buf, CpuRead);
+  return ::crc32(0L,(unsigned char *)&buf_v[0],(size_t)sizeof(vobj)*buf.oSites());
+}
+
+#define CRC(U) std::cout << "FingerPrint "<<__FILE__ <<" "<< __LINE__ <<" "<< #U <<" "<<crc(U)<<std::endl;
+
+NAMESPACE_END(Grid);
+
+

Grid/lattice/Lattice_reduction.h

@@ -142,6 +142,15 @@ inline typename vobj::scalar_objectD sumD(const vobj *arg, Integer osites)
   return sumD_cpu(arg,osites);
 #endif  
 }
+template<class vobj>
+inline typename vobj::scalar_objectD sumD_large(const vobj *arg, Integer osites)
+{
+#if defined(GRID_CUDA)||defined(GRID_HIP)
+  return sumD_gpu_large(arg,osites);
+#else
+  return sumD_cpu(arg,osites);
+#endif  
+}
 
 template<class vobj>
 inline typename vobj::scalar_object sum(const Lattice<vobj> &arg)
@@ -159,6 +168,22 @@ inline typename vobj::scalar_object sum(const Lattice<vobj> &arg)
   return ssum;
 }
 
+template<class vobj>
+inline typename vobj::scalar_object sum_large(const Lattice<vobj> &arg)
+{
+#if defined(GRID_CUDA)||defined(GRID_HIP)
+  autoView( arg_v, arg, AcceleratorRead);
+  Integer osites = arg.Grid()->oSites();
+  auto ssum= sum_gpu_large(&arg_v[0],osites);
+#else
+  autoView(arg_v, arg, CpuRead);
+  Integer osites = arg.Grid()->oSites();
+  auto ssum= sum_cpu(&arg_v[0],osites);
+#endif
+  arg.Grid()->GlobalSum(ssum);
+  return ssum;
+}
+
 ////////////////////////////////////////////////////////////////////////////////////////////////////
 // Deterministic Reduction operations
 ////////////////////////////////////////////////////////////////////////////////////////////////////

Grid/lattice/Lattice_reduction_gpu.h

@@ -23,7 +23,7 @@ unsigned int nextPow2(Iterator x) {
 }
 
 template <class Iterator>
-void getNumBlocksAndThreads(const Iterator n, const size_t sizeofsobj, Iterator &threads, Iterator &blocks) {
+int getNumBlocksAndThreads(const Iterator n, const size_t sizeofsobj, Iterator &threads, Iterator &blocks) {
   
   int device;
 #ifdef GRID_CUDA
@@ -37,13 +37,13 @@ void getNumBlocksAndThreads(const Iterator n, const size_t sizeofsobj, Iterator
   Iterator sharedMemPerBlock   = gpu_props[device].sharedMemPerBlock;
   Iterator maxThreadsPerBlock  = gpu_props[device].maxThreadsPerBlock;
   Iterator multiProcessorCount = gpu_props[device].multiProcessorCount;
-  
+  /*  
   std::cout << GridLogDebug << "GPU has:" << std::endl;
   std::cout << GridLogDebug << "\twarpSize            = " << warpSize << std::endl;
   std::cout << GridLogDebug << "\tsharedMemPerBlock   = " << sharedMemPerBlock << std::endl;
   std::cout << GridLogDebug << "\tmaxThreadsPerBlock  = " << maxThreadsPerBlock << std::endl;
   std::cout << GridLogDebug << "\tmultiProcessorCount = " << multiProcessorCount << std::endl;
-  
+  */  
   if (warpSize != WARP_SIZE) {
     std::cout << GridLogError << "The warp size of the GPU in use does not match the warp size set when compiling Grid." << std::endl;
     exit(EXIT_FAILURE);
@@ -53,12 +53,12 @@ void getNumBlocksAndThreads(const Iterator n, const size_t sizeofsobj, Iterator
   threads = warpSize;
   if ( threads*sizeofsobj > sharedMemPerBlock ) {
     std::cout << GridLogError << "The object is too large for the shared memory." << std::endl;
-    exit(EXIT_FAILURE);
+    return 0;
   }
   while( 2*threads*sizeofsobj < sharedMemPerBlock && 2*threads <= maxThreadsPerBlock ) threads *= 2;
   // keep all the streaming multiprocessors busy
   blocks = nextPow2(multiProcessorCount);
-  
+  return 1;
 }
 
 template <class sobj, class Iterator>
@@ -198,7 +198,7 @@ __global__ void reduceKernel(const vobj *lat, sobj *buffer, Iterator n) {
 // Possibly promote to double and sum
 /////////////////////////////////////////////////////////////////////////////////////////////////////////
 template <class vobj>
-inline typename vobj::scalar_objectD sumD_gpu(const vobj *lat, Integer osites) 
+inline typename vobj::scalar_objectD sumD_gpu_small(const vobj *lat, Integer osites) 
 {
   typedef typename vobj::scalar_objectD sobj;
   typedef decltype(lat) Iterator;
@@ -207,7 +207,9 @@ inline typename vobj::scalar_objectD sumD_gpu(const vobj *lat, Integer osites)
   Integer size = osites*nsimd;
 
   Integer numThreads, numBlocks;
-  getNumBlocksAndThreads(size, sizeof(sobj), numThreads, numBlocks);
+  int ok = getNumBlocksAndThreads(size, sizeof(sobj), numThreads, numBlocks);
+  assert(ok);
+
   Integer smemSize = numThreads * sizeof(sobj);
 
   Vector<sobj> buffer(numBlocks);
@@ -218,6 +220,54 @@ inline typename vobj::scalar_objectD sumD_gpu(const vobj *lat, Integer osites)
   auto result = buffer_v[0];
   return result;
 }
+
+template <class vobj>
+inline typename vobj::scalar_objectD sumD_gpu_large(const vobj *lat, Integer osites)
+{
+  typedef typename vobj::vector_type  vector;
+  typedef typename vobj::scalar_typeD scalarD;
+  typedef typename vobj::scalar_objectD sobj;
+  sobj ret;
+  scalarD *ret_p = (scalarD *)&ret;
+  
+  const int words = sizeof(vobj)/sizeof(vector);
+
+  Vector<vector> buffer(osites);
+  vector *dat = (vector *)lat;
+  vector *buf = &buffer[0];
+  iScalar<vector> *tbuf =(iScalar<vector> *)  &buffer[0];
+  for(int w=0;w<words;w++) {
+
+    accelerator_for(ss,osites,1,{
+	buf[ss] = dat[ss*words+w];
+      });
+      
+    ret_p[w] = sumD_gpu_small(tbuf,osites);
+  }
+  return ret;
+}
+
+template <class vobj>
+inline typename vobj::scalar_objectD sumD_gpu(const vobj *lat, Integer osites)
+{
+  typedef typename vobj::vector_type  vector;
+  typedef typename vobj::scalar_typeD scalarD;
+  typedef typename vobj::scalar_objectD sobj;
+  sobj ret;
+  
+  Integer nsimd= vobj::Nsimd();
+  Integer size = osites*nsimd;
+  Integer numThreads, numBlocks;
+  int ok = getNumBlocksAndThreads(size, sizeof(sobj), numThreads, numBlocks);
+  
+  if ( ok ) {
+    ret = sumD_gpu_small(lat,osites);
+  } else {
+    ret = sumD_gpu_large(lat,osites);
+  }
+  return ret;
+}
+
 /////////////////////////////////////////////////////////////////////////////////////////////////////////
 // Return as same precision as input performing reduction in double precision though
 /////////////////////////////////////////////////////////////////////////////////////////////////////////
@@ -230,6 +280,13 @@ inline typename vobj::scalar_object sum_gpu(const vobj *lat, Integer osites)
   return result;
 }
 
-
+template <class vobj>
+inline typename vobj::scalar_object sum_gpu_large(const vobj *lat, Integer osites)
+{
+  typedef typename vobj::scalar_object sobj;
+  sobj result;
+  result = sumD_gpu_large(lat,osites);
+  return result;
+}
 
 NAMESPACE_END(Grid);

Grid/log/Log.cc

@@ -69,6 +69,7 @@ GridLogger GridLogDebug  (1, "Debug", GridLogColours, "PURPLE");
 GridLogger GridLogPerformance(1, "Performance", GridLogColours, "GREEN");
 GridLogger GridLogIterative  (1, "Iterative", GridLogColours, "BLUE");
 GridLogger GridLogIntegrator (1, "Integrator", GridLogColours, "BLUE");
+GridLogger GridLogHMC (1, "HMC", GridLogColours, "BLUE");
 
 void GridLogConfigure(std::vector<std::string> &logstreams) {
   GridLogError.Active(0);
@@ -79,6 +80,7 @@ void GridLogConfigure(std::vector<std::string> &logstreams) {
   GridLogPerformance.Active(0);
   GridLogIntegrator.Active(1);
   GridLogColours.Active(0);
+  GridLogHMC.Active(1);
 
   for (int i = 0; i < logstreams.size(); i++) {
     if (logstreams[i] == std::string("Error"))       GridLogError.Active(1);
@@ -87,7 +89,8 @@ void GridLogConfigure(std::vector<std::string> &logstreams) {
     if (logstreams[i] == std::string("Iterative"))   GridLogIterative.Active(1);
     if (logstreams[i] == std::string("Debug"))       GridLogDebug.Active(1);
     if (logstreams[i] == std::string("Performance")) GridLogPerformance.Active(1);
-    if (logstreams[i] == std::string("Integrator"))  GridLogIntegrator.Active(1);
+    if (logstreams[i] == std::string("NoIntegrator"))  GridLogIntegrator.Active(0);
+    if (logstreams[i] == std::string("NoHMC"))         GridLogHMC.Active(0);
     if (logstreams[i] == std::string("Colours"))     GridLogColours.Active(1);
   }
 }

Grid/log/Log.h

@@ -182,6 +182,7 @@ extern GridLogger GridLogDebug  ;
 extern GridLogger GridLogPerformance;
 extern GridLogger GridLogIterative  ;
 extern GridLogger GridLogIntegrator  ;
+extern GridLogger GridLogHMC;
 extern Colours    GridLogColours;
 
 std::string demangle(const char* name) ;

Grid/parallelIO/IldgIO.h

@@ -31,6 +31,7 @@ directory
 #include <fstream>
 #include <iomanip>
 #include <iostream>
+#include <string>
 #include <map>
 
 #include <pwd.h>
@@ -654,7 +655,8 @@ class IldgWriter : public ScidacWriter {
     // Fill ILDG header data struct
     //////////////////////////////////////////////////////
     ildgFormat ildgfmt ;
-    ildgfmt.field     = std::string("su3gauge");
+    const std::string stNC = std::to_string( Nc ) ;
+    ildgfmt.field          = std::string("su"+stNC+"gauge");
 
     if ( format == std::string("IEEE32BIG") ) { 
       ildgfmt.precision = 32;
@@ -871,7 +873,8 @@ class IldgReader : public GridLimeReader {
     } else { 
 
       assert(found_ildgFormat);
-      assert ( ildgFormat_.field == std::string("su3gauge") );
+      const std::string stNC = std::to_string( Nc ) ;
+      assert ( ildgFormat_.field == std::string("su"+stNC+"gauge") );
 
       ///////////////////////////////////////////////////////////////////////////////////////
       // Populate our Grid metadata as best we can
@@ -879,7 +882,7 @@ class IldgReader : public GridLimeReader {
 
       std::ostringstream vers; vers << ildgFormat_.version;
       FieldMetaData_.hdr_version = vers.str();
-      FieldMetaData_.data_type = std::string("4D_SU3_GAUGE_3X3");
+      FieldMetaData_.data_type = std::string("4D_SU"+stNC+"_GAUGE_"+stNC+"x"+stNC);
 
       FieldMetaData_.nd=4;
       FieldMetaData_.dimension.resize(4);

Grid/parallelIO/MetaData.h

@@ -6,8 +6,8 @@
 
     Copyright (C) 2015
 
-
     Author: Peter Boyle <paboyle@ph.ed.ac.uk>
+    Author: Jamie Hudspith <renwick.james.hudspth@gmail.com>
 
     This program is free software; you can redistribute it and/or modify
     it under the terms of the GNU General Public License as published by
@@ -182,8 +182,8 @@ class GaugeStatistics
 public:
   void operator()(Lattice<vLorentzColourMatrixD> & data,FieldMetaData &header)
   {
-    header.link_trace=WilsonLoops<Impl>::linkTrace(data);
+    header.link_trace = WilsonLoops<Impl>::linkTrace(data);
-    header.plaquette =WilsonLoops<Impl>::avgPlaquette(data);
+    header.plaquette  = WilsonLoops<Impl>::avgPlaquette(data);
   }
 };
 typedef GaugeStatistics<PeriodicGimplD> PeriodicGaugeStatistics;
@@ -203,20 +203,24 @@ template<> inline void PrepareMetaData<vLorentzColourMatrixD>(Lattice<vLorentzCo
 //////////////////////////////////////////////////////////////////////
 inline void reconstruct3(LorentzColourMatrix & cm)
 {
-  const int x=0;
+  assert( Nc < 4 && Nc > 1 ) ;
-  const int y=1;
-  const int z=2;
   for(int mu=0;mu<Nd;mu++){
-    cm(mu)()(2,x) = adj(cm(mu)()(0,y)*cm(mu)()(1,z)-cm(mu)()(0,z)*cm(mu)()(1,y)); //x= yz-zy
+    #if Nc == 2
-    cm(mu)()(2,y) = adj(cm(mu)()(0,z)*cm(mu)()(1,x)-cm(mu)()(0,x)*cm(mu)()(1,z)); //y= zx-xz
+      cm(mu)()(1,0) = -adj(cm(mu)()(0,y)) ;
-    cm(mu)()(2,z) = adj(cm(mu)()(0,x)*cm(mu)()(1,y)-cm(mu)()(0,y)*cm(mu)()(1,x)); //z= xy-yx
+      cm(mu)()(1,1) =  adj(cm(mu)()(0,x)) ;
+    #else
+      const int x=0 , y=1 , z=2 ; // a little disinenuous labelling
+      cm(mu)()(2,x) = adj(cm(mu)()(0,y)*cm(mu)()(1,z)-cm(mu)()(0,z)*cm(mu)()(1,y)); //x= yz-zy
+      cm(mu)()(2,y) = adj(cm(mu)()(0,z)*cm(mu)()(1,x)-cm(mu)()(0,x)*cm(mu)()(1,z)); //y= zx-xz
+      cm(mu)()(2,z) = adj(cm(mu)()(0,x)*cm(mu)()(1,y)-cm(mu)()(0,y)*cm(mu)()(1,x)); //z= xy-yx
+    #endif
   }
 }
 
 ////////////////////////////////////////////////////////////////////////////////
 // Some data types for intermediate storage
 ////////////////////////////////////////////////////////////////////////////////
-template<typename vtype> using iLorentzColour2x3 = iVector<iVector<iVector<vtype, Nc>, 2>, Nd >;
+template<typename vtype> using iLorentzColour2x3 = iVector<iVector<iVector<vtype, Nc>, Nc-1>, Nd >;
 
 typedef iLorentzColour2x3<Complex>  LorentzColour2x3;
 typedef iLorentzColour2x3<ComplexF> LorentzColour2x3F;
@@ -278,7 +282,6 @@ struct GaugeSimpleMunger{
 
 template <class fobj, class sobj>
 struct GaugeSimpleUnmunger {
-
   void operator()(sobj &in, fobj &out) {
     for (int mu = 0; mu < Nd; mu++) {
       for (int i = 0; i < Nc; i++) {
@@ -317,8 +320,8 @@ template<class fobj,class sobj>
 struct Gauge3x2munger{
   void operator() (fobj &in,sobj &out){
     for(int mu=0;mu<Nd;mu++){
-      for(int i=0;i<2;i++){
+      for(int i=0;i<Nc-1;i++){
-	for(int j=0;j<3;j++){
+	for(int j=0;j<Nc;j++){
 	  out(mu)()(i,j) = in(mu)(i)(j);
 	}}
     }
@@ -330,8 +333,8 @@ template<class fobj,class sobj>
 struct Gauge3x2unmunger{
   void operator() (sobj &in,fobj &out){
     for(int mu=0;mu<Nd;mu++){
-      for(int i=0;i<2;i++){
+      for(int i=0;i<Nc-1;i++){
-	for(int j=0;j<3;j++){
+	for(int j=0;j<Nc;j++){
 	  out(mu)(i)(j) = in(mu)()(i,j);
 	}}
     }

Grid/parallelIO/NerscIO.h

@@ -9,6 +9,7 @@
     Author: Matt Spraggs <matthew.spraggs@gmail.com>
     Author: Peter Boyle <paboyle@ph.ed.ac.uk>
     Author: paboyle <paboyle@ph.ed.ac.uk>
+    Author: Jamie Hudspith <renwick.james.hudspth@gmail.com>
 
     This program is free software; you can redistribute it and/or modify
     it under the terms of the GNU General Public License as published by
@@ -30,6 +31,8 @@
 #ifndef GRID_NERSC_IO_H
 #define GRID_NERSC_IO_H
 
+#include <string>
+
 NAMESPACE_BEGIN(Grid);
 
 using namespace Grid;
@@ -145,15 +148,17 @@ public:
 
     std::string format(header.floating_point);
 
-    int ieee32big = (format == std::string("IEEE32BIG"));
+    const int ieee32big = (format == std::string("IEEE32BIG"));
-    int ieee32    = (format == std::string("IEEE32"));
+    const int ieee32    = (format == std::string("IEEE32"));
-    int ieee64big = (format == std::string("IEEE64BIG"));
+    const int ieee64big = (format == std::string("IEEE64BIG"));
-    int ieee64    = (format == std::string("IEEE64") || format == std::string("IEEE64LITTLE"));
+    const int ieee64    = (format == std::string("IEEE64") || \
+			   format == std::string("IEEE64LITTLE"));
 
     uint32_t nersc_csum,scidac_csuma,scidac_csumb;
     // depending on datatype, set up munger;
     // munger is a function of <floating point, Real, data_type>
-    if ( header.data_type == std::string("4D_SU3_GAUGE") ) {
+    const std::string stNC = std::to_string( Nc ) ;
+    if ( header.data_type == std::string("4D_SU"+stNC+"_GAUGE") ) {
       if ( ieee32 || ieee32big ) {
 	BinaryIO::readLatticeObject<vLorentzColourMatrixD, LorentzColour2x3F> 
 	  (Umu,file,Gauge3x2munger<LorentzColour2x3F,LorentzColourMatrix>(), offset,format,
@@ -164,7 +169,7 @@ public:
 	  (Umu,file,Gauge3x2munger<LorentzColour2x3D,LorentzColourMatrix>(),offset,format,
 	   nersc_csum,scidac_csuma,scidac_csumb);
       }
-    } else if ( header.data_type == std::string("4D_SU3_GAUGE_3x3") ) {
+    } else if ( header.data_type == std::string("4D_SU"+stNC+"_GAUGE_"+stNC+"x"+stNC) ) {
       if ( ieee32 || ieee32big ) {
 	BinaryIO::readLatticeObject<vLorentzColourMatrixD,LorentzColourMatrixF>
 	  (Umu,file,GaugeSimpleMunger<LorentzColourMatrixF,LorentzColourMatrix>(),offset,format,
@@ -209,27 +214,29 @@ public:
   template<class GaugeStats=PeriodicGaugeStatistics>
   static inline void writeConfiguration(Lattice<vLorentzColourMatrixD > &Umu,
 					std::string file, 
-					std::string ens_label = std::string("DWF"))
+					std::string ens_label = std::string("DWF"),
+					std::string ens_id = std::string("UKQCD"),
+					unsigned int sequence_number = 1)
   {
-    writeConfiguration(Umu,file,0,1,ens_label);
+    writeConfiguration(Umu,file,0,1,ens_label,ens_id,sequence_number);
   }
   template<class GaugeStats=PeriodicGaugeStatistics>
   static inline void writeConfiguration(Lattice<vLorentzColourMatrixD > &Umu,
 					std::string file, 
 					int two_row,
 					int bits32,
-					std::string ens_label = std::string("DWF"))
+					std::string ens_label = std::string("DWF"),
+					std::string ens_id = std::string("UKQCD"),
+					unsigned int sequence_number = 1)
   {
     typedef vLorentzColourMatrixD vobj;
     typedef typename vobj::scalar_object sobj;
 
     FieldMetaData header;
-    ///////////////////////////////////////////
+    header.sequence_number = sequence_number;
-    // Following should become arguments
+    header.ensemble_id     = ens_id;
-    ///////////////////////////////////////////
-    header.sequence_number = 1;
-    header.ensemble_id     = std::string("UKQCD");
     header.ensemble_label  = ens_label;
+    header.hdr_version     = "1.0" ;
 
     typedef LorentzColourMatrixD fobj3D;
     typedef LorentzColour2x3D    fobj2D;
@@ -243,10 +250,14 @@ public:
 
     uint64_t offset;
 
-    // Sod it -- always write 3x3 double
+    // Sod it -- always write NcxNc double
-    header.floating_point = std::string("IEEE64BIG");
+    header.floating_point  = std::string("IEEE64BIG");
-    header.data_type      = std::string("4D_SU3_GAUGE_3x3");
+    const std::string stNC = std::to_string( Nc ) ;
-    GaugeSimpleUnmunger<fobj3D,sobj> munge;
+    if( two_row ) {
+      header.data_type = std::string("4D_SU" + stNC + "_GAUGE" );
+    } else {
+      header.data_type = std::string("4D_SU" + stNC + "_GAUGE_" + stNC + "x" + stNC );
+    }
     if ( grid->IsBoss() ) { 
       truncate(file);
       offset = writeHeader(header,file);
@@ -254,8 +265,15 @@ public:
     grid->Broadcast(0,(void *)&offset,sizeof(offset));
 
     uint32_t nersc_csum,scidac_csuma,scidac_csumb;
-    BinaryIO::writeLatticeObject<vobj,fobj3D>(Umu,file,munge,offset,header.floating_point,
+    if( two_row ) {
-					      nersc_csum,scidac_csuma,scidac_csumb);
+      Gauge3x2unmunger<fobj2D,sobj> munge;
+      BinaryIO::writeLatticeObject<vobj,fobj2D>(Umu,file,munge,offset,header.floating_point,
+						nersc_csum,scidac_csuma,scidac_csumb);
+    } else {
+      GaugeSimpleUnmunger<fobj3D,sobj> munge;
+      BinaryIO::writeLatticeObject<vobj,fobj3D>(Umu,file,munge,offset,header.floating_point,
+						nersc_csum,scidac_csuma,scidac_csumb);
+    }
     header.checksum = nersc_csum;
     if ( grid->IsBoss() ) { 
       writeHeader(header,file);
@@ -287,8 +305,7 @@ public:
     header.plaquette=0.0;
     MachineCharacteristics(header);
 
-	uint64_t offset;
+    uint64_t offset;
-  
 #ifdef RNG_RANLUX
     header.floating_point = std::string("UINT64");
     header.data_type      = std::string("RANLUX48");
@@ -328,7 +345,7 @@ public:
 
     GridBase *grid = parallel.Grid();
 
-	uint64_t offset = readHeader(file,grid,header);
+    uint64_t offset = readHeader(file,grid,header);
 
     FieldMetaData clone(header);
 

Grid/pugixml/pugixml.cc

@@ -16,8 +16,12 @@
 
 #ifdef __NVCC__
 #pragma push
+#if (__CUDACC_VER_MAJOR__ >= 11) && (__CUDACC_VER_MINOR__ >= 5)
+#pragma nv_diag_suppress declared_but_not_referenced // suppress "function was declared but never referenced warning"
+#else
 #pragma diag_suppress declared_but_not_referenced // suppress "function was declared but never referenced warning"
 #endif
+#endif
 
 #include "pugixml.h"
 

Grid/qcd/action/ActionBase.h

@@ -40,6 +40,29 @@ class Action
 
 public:
   bool is_smeared = false;
+  RealD deriv_norm_sum;
+  RealD deriv_max_sum;
+  int   deriv_num;
+  RealD deriv_us;
+  RealD S_us;
+  RealD refresh_us;
+  void  reset_timer(void)        {
+    deriv_us = S_us = refresh_us = 0.0;
+    deriv_num=0;
+    deriv_norm_sum = deriv_max_sum=0.0;
+  }
+  void  deriv_log(RealD nrm, RealD max) { deriv_max_sum+=max; deriv_norm_sum+=nrm; deriv_num++;}
+  RealD deriv_max_average(void)         { return deriv_max_sum/deriv_num; };
+  RealD deriv_norm_average(void)        { return deriv_norm_sum/deriv_num; };
+  RealD deriv_timer(void)        { return deriv_us; };
+  RealD S_timer(void)            { return deriv_us; };
+  RealD refresh_timer(void)      { return deriv_us; };
+  void deriv_timer_start(void)   { deriv_us-=usecond(); }
+  void deriv_timer_stop(void)    { deriv_us+=usecond(); }
+  void refresh_timer_start(void) { refresh_us-=usecond(); }
+  void refresh_timer_stop(void)  { refresh_us+=usecond(); }
+  void S_timer_start(void)       { S_us-=usecond(); }
+  void S_timer_stop(void)        { S_us+=usecond(); }
   // Heatbath?
   virtual void refresh(const GaugeField& U, GridSerialRNG &sRNG, GridParallelRNG& pRNG) = 0; // refresh pseudofermions
   virtual RealD S(const GaugeField& U) = 0;                             // evaluate the action

Grid/qcd/action/ActionCore.h

@@ -37,6 +37,10 @@ NAMESPACE_CHECK(ActionSet);
 #include <Grid/qcd/action/ActionParams.h>
 NAMESPACE_CHECK(ActionParams);
 
+#include <Grid/qcd/action/filters/MomentumFilter.h>
+#include <Grid/qcd/action/filters/DirichletFilter.h>
+#include <Grid/qcd/action/filters/DDHMCFilter.h>
+
 ////////////////////////////////////////////
 // Gauge Actions
 ////////////////////////////////////////////

Grid/qcd/action/ActionParams.h

@@ -37,24 +37,32 @@ NAMESPACE_BEGIN(Grid);
 // These can move into a params header and be given MacroMagic serialisation
 struct GparityWilsonImplParams {
   Coordinate twists;
-  GparityWilsonImplParams() : twists(Nd, 0) {};
+  Coordinate dirichlet; // Blocksize of dirichlet BCs
+  GparityWilsonImplParams() : twists(Nd, 0), dirichlet(Nd, 0) {};
 };
   
 struct WilsonImplParams {
   bool overlapCommsCompute;
+  Coordinate dirichlet; // Blocksize of dirichlet BCs
   AcceleratorVector<Real,Nd> twist_n_2pi_L;
   AcceleratorVector<Complex,Nd> boundary_phases;
   WilsonImplParams()  {
+    dirichlet.resize(Nd,0);
     boundary_phases.resize(Nd, 1.0);
       twist_n_2pi_L.resize(Nd, 0.0);
   };
   WilsonImplParams(const AcceleratorVector<Complex,Nd> phi) : boundary_phases(phi), overlapCommsCompute(false) {
     twist_n_2pi_L.resize(Nd, 0.0);
+    dirichlet.resize(Nd,0);
   }
 };
 
 struct StaggeredImplParams {
-  StaggeredImplParams()  {};
+  Coordinate dirichlet; // Blocksize of dirichlet BCs
+  StaggeredImplParams()
+  {
+    dirichlet.resize(Nd,0);
+  };
 };
   
   struct OneFlavourRationalParams : Serializable {

Grid/qcd/action/fermion/CayleyFermion5D.h

@@ -68,9 +68,16 @@ public:
   ///////////////////////////////////////////////////////////////
   // Support for MADWF tricks
   ///////////////////////////////////////////////////////////////
-  RealD Mass(void) { return mass; };
+  RealD Mass(void) { return (mass_plus + mass_minus) / 2.0; };
+  RealD MassPlus(void) { return mass_plus; };
+  RealD MassMinus(void) { return mass_minus; };
   void  SetMass(RealD _mass) { 
-    mass=_mass; 
+    mass_plus=mass_minus=_mass; 
+    SetCoefficientsInternal(_zolo_hi,_gamma,_b,_c);  // Reset coeffs
+  } ;
+  void  SetMass(RealD _mass_plus, RealD _mass_minus) { 
+    mass_plus=_mass_plus;
+    mass_minus=_mass_minus;
     SetCoefficientsInternal(_zolo_hi,_gamma,_b,_c);  // Reset coeffs
   } ;
   void  P(const FermionField &psi, FermionField &chi);
@@ -108,7 +115,7 @@ public:
   void   MeooeDag5D    (const FermionField &in, FermionField &out);
 
   //    protected:
-  RealD mass;
+  RealD mass_plus, mass_minus;
 
   // Save arguments to SetCoefficientsInternal
   Vector<Coeff_t> _gamma;

Grid/qcd/action/fermion/CloverHelpers.h

@@ -0,0 +1,435 @@
+/*************************************************************************************
+
+    Grid physics library, www.github.com/paboyle/Grid
+
+    Source file: ./lib/qcd/action/fermion/WilsonCloverFermionImplementation.h
+
+    Copyright (C) 2017 - 2022
+
+    Author: paboyle <paboyle@ph.ed.ac.uk>
+    Author: Daniel Richtmann <daniel.richtmann@gmail.com>
+    Author: Mattia Bruno <mattia.bruno@cern.ch>
+
+    This program is free software; you can redistribute it and/or modify
+    it under the terms of the GNU General Public License as published by
+    the Free Software Foundation; either version 2 of the License, or
+    (at your option) any later version.
+
+    This program is distributed in the hope that it will be useful,
+    but WITHOUT ANY WARRANTY; without even the implied warranty of
+    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+    GNU General Public License for more details.
+
+    You should have received a copy of the GNU General Public License along
+    with this program; if not, write to the Free Software Foundation, Inc.,
+    51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
+
+    See the full license in the file "LICENSE" in the top level distribution directory
+    *************************************************************************************/
+/*  END LEGAL */
+
+#pragma once
+
+#include <Grid/Grid.h>
+#include <Grid/qcd/spin/Dirac.h>
+#include <Grid/qcd/action/fermion/WilsonCloverHelpers.h>
+
+////////////////////////////////////////////
+// Standard Clover
+//   (4+m0) + csw * clover_term
+// Exp Clover
+//   (4+m0) * exp(csw/(4+m0) clover_term)
+//   = (4+m0) + csw * clover_term + ...
+////////////////////////////////////////////
+
+NAMESPACE_BEGIN(Grid);
+
+
+//////////////////////////////////
+// Generic Standard Clover
+//////////////////////////////////
+
+template<class Impl>
+class CloverHelpers: public WilsonCloverHelpers<Impl> {
+public:
+
+  INHERIT_IMPL_TYPES(Impl);
+  INHERIT_CLOVER_TYPES(Impl);
+
+  typedef WilsonCloverHelpers<Impl> Helpers;
+
+  static void Instantiate(CloverField& CloverTerm, CloverField& CloverTermInv, RealD csw_t, RealD diag_mass) {
+    GridBase *grid = CloverTerm.Grid();
+    CloverTerm += diag_mass;
+
+    int lvol = grid->lSites();
+    int DimRep = Impl::Dimension;
+    {
+      autoView(CTv,CloverTerm,CpuRead);
+      autoView(CTIv,CloverTermInv,CpuWrite);
+      thread_for(site, lvol, {
+        Coordinate lcoor;
+        grid->LocalIndexToLocalCoor(site, lcoor);
+        Eigen::MatrixXcd EigenCloverOp = Eigen::MatrixXcd::Zero(Ns * DimRep, Ns * DimRep);
+        Eigen::MatrixXcd EigenInvCloverOp = Eigen::MatrixXcd::Zero(Ns * DimRep, Ns * DimRep);
+        typename SiteClover::scalar_object Qx = Zero(), Qxinv = Zero();
+        peekLocalSite(Qx, CTv, lcoor);
+
+        for (int j = 0; j < Ns; j++)
+          for (int k = 0; k < Ns; k++)
+            for (int a = 0; a < DimRep; a++)
+              for (int b = 0; b < DimRep; b++){
+                auto zz =  Qx()(j, k)(a, b);
+                EigenCloverOp(a + j * DimRep, b + k * DimRep) = std::complex<double>(zz);
+              }
+
+        EigenInvCloverOp = EigenCloverOp.inverse();
+        for (int j = 0; j < Ns; j++)
+          for (int k = 0; k < Ns; k++)
+            for (int a = 0; a < DimRep; a++)
+              for (int b = 0; b < DimRep; b++)
+                Qxinv()(j, k)(a, b) = EigenInvCloverOp(a + j * DimRep, b + k * DimRep);
+               pokeLocalSite(Qxinv, CTIv, lcoor);
+      });
+    }
+  }
+
+  static GaugeLinkField Cmunu(std::vector<GaugeLinkField> &U, GaugeLinkField &lambda, int mu, int nu) {
+    return Helpers::Cmunu(U, lambda, mu, nu);
+  }
+
+};
+
+
+//////////////////////////////////
+// Generic Exp Clover
+//////////////////////////////////
+
+template<class Impl>
+class ExpCloverHelpers: public WilsonCloverHelpers<Impl> {
+public:
+
+  INHERIT_IMPL_TYPES(Impl);
+  INHERIT_CLOVER_TYPES(Impl);
+
+  template <typename vtype> using iImplClover = iScalar<iMatrix<iMatrix<vtype, Impl::Dimension>, Ns>>;
+  typedef WilsonCloverHelpers<Impl> Helpers;
+
+  // Can this be avoided?
+  static void IdentityTimesC(const CloverField& in, RealD c) {
+    int DimRep = Impl::Dimension;
+
+    autoView(in_v, in, AcceleratorWrite);
+
+    accelerator_for(ss, in.Grid()->oSites(), 1, {
+      for (int sa=0; sa<Ns; sa++)
+        for (int ca=0; ca<DimRep; ca++)
+          in_v[ss]()(sa,sa)(ca,ca) = c;
+    });
+  }
+
+  static int getNMAX(RealD prec, RealD R) {
+    /* compute stop condition for exponential */
+    int NMAX=1;
+    RealD cond=R*R/2.;
+
+    while (cond*std::exp(R)>prec) {
+      NMAX++;
+      cond*=R/(double)(NMAX+1);
+    }
+    return NMAX;
+  }
+
+  static int getNMAX(Lattice<iImplClover<vComplexD>> &t, RealD R) {return getNMAX(1e-12,R);}
+  static int getNMAX(Lattice<iImplClover<vComplexF>> &t, RealD R) {return getNMAX(1e-6,R);}
+
+  static void Instantiate(CloverField& Clover, CloverField& CloverInv, RealD csw_t, RealD diag_mass) {
+    GridBase* grid = Clover.Grid();
+    CloverField ExpClover(grid);
+
+    int NMAX = getNMAX(Clover, 3.*csw_t/diag_mass);
+
+    Clover *= (1.0/diag_mass);
+
+    // Taylor expansion, slow but generic
+    // Horner scheme: a0 + a1 x + a2 x^2 + .. = a0 + x (a1 + x(...))
+    // qN = cN
+    // qn = cn + qn+1 X
+    std::vector<RealD> cn(NMAX+1);
+    cn[0] = 1.0;
+    for (int i=1; i<=NMAX; i++)
+      cn[i] = cn[i-1] / RealD(i);
+
+    ExpClover = Zero();
+    IdentityTimesC(ExpClover, cn[NMAX]);
+    for (int i=NMAX-1; i>=0; i--)
+      ExpClover = ExpClover * Clover + cn[i];
+
+    // prepare inverse
+    CloverInv = (-1.0)*Clover;
+
+    Clover = ExpClover * diag_mass;
+
+    ExpClover = Zero();
+    IdentityTimesC(ExpClover, cn[NMAX]);
+    for (int i=NMAX-1; i>=0; i--)
+      ExpClover = ExpClover * CloverInv + cn[i];
+
+    CloverInv = ExpClover * (1.0/diag_mass);
+
+  }
+
+  static GaugeLinkField Cmunu(std::vector<GaugeLinkField> &U, GaugeLinkField &lambda, int mu, int nu) {
+    assert(0);
+    return lambda;
+  }
+
+};
+
+
+//////////////////////////////////
+// Compact Standard Clover
+//////////////////////////////////
+
+
+template<class Impl>
+class CompactCloverHelpers: public CompactWilsonCloverHelpers<Impl>,
+                            public WilsonCloverHelpers<Impl> {
+public:
+
+  INHERIT_IMPL_TYPES(Impl);
+  INHERIT_CLOVER_TYPES(Impl);
+  INHERIT_COMPACT_CLOVER_TYPES(Impl);
+
+  typedef WilsonCloverHelpers<Impl> Helpers;
+  typedef CompactWilsonCloverHelpers<Impl> CompactHelpers;
+
+  static void MassTerm(CloverField& Clover, RealD diag_mass) {
+    Clover += diag_mass;
+  }
+
+  static void Exponentiate_Clover(CloverDiagonalField& Diagonal,
+                          CloverTriangleField& Triangle,
+                          RealD csw_t, RealD diag_mass) {
+
+    // Do nothing
+  }
+
+  // TODO: implement Cmunu for better performances with compact layout, but don't do it
+  // here, but rather in WilsonCloverHelpers.h -> CompactWilsonCloverHelpers
+  static GaugeLinkField Cmunu(std::vector<GaugeLinkField> &U, GaugeLinkField &lambda, int mu, int nu) {
+    return Helpers::Cmunu(U, lambda, mu, nu);
+  }
+};
+
+//////////////////////////////////
+// Compact Exp Clover
+//////////////////////////////////
+
+template<class Impl>
+class CompactExpCloverHelpers: public CompactWilsonCloverHelpers<Impl> {
+public:
+
+  INHERIT_IMPL_TYPES(Impl);
+  INHERIT_CLOVER_TYPES(Impl);
+  INHERIT_COMPACT_CLOVER_TYPES(Impl);
+
+  template <typename vtype> using iImplClover = iScalar<iMatrix<iMatrix<vtype, Impl::Dimension>, Ns>>;
+  typedef CompactWilsonCloverHelpers<Impl> CompactHelpers;
+
+  static void MassTerm(CloverField& Clover, RealD diag_mass) {
+    // do nothing!
+    // mass term is multiplied to exp(Clover) below
+  }
+
+  static int getNMAX(RealD prec, RealD R) {
+    /* compute stop condition for exponential */
+    int NMAX=1;
+    RealD cond=R*R/2.;
+
+    while (cond*std::exp(R)>prec) {
+      NMAX++;
+      cond*=R/(double)(NMAX+1);
+    }
+    return NMAX;
+  }
+
+  static int getNMAX(Lattice<iImplCloverDiagonal<vComplexD>> &t, RealD R) {return getNMAX(1e-12,R);}
+  static int getNMAX(Lattice<iImplCloverDiagonal<vComplexF>> &t, RealD R) {return getNMAX(1e-6,R);}
+
+  static void ExponentiateHermitean6by6(const iMatrix<ComplexD,6> &arg, const RealD& alpha, const std::vector<RealD>& cN, const int Niter, iMatrix<ComplexD,6>& dest){
+
+  	  typedef iMatrix<ComplexD,6> mat;
+
+  	  RealD qn[6];
+  	  RealD qnold[6];
+  	  RealD p[5];
+  	  RealD trA2, trA3, trA4;
+
+  	  mat A2, A3, A4, A5;
+  	  A2 = alpha * alpha * arg * arg;
+  	  A3 = alpha * arg * A2;
+  	  A4 = A2 * A2;
+  	  A5 = A2 * A3;
+
+  	  trA2 = toReal( trace(A2) );
+  	  trA3 = toReal( trace(A3) );
+  	  trA4 = toReal( trace(A4));
+
+  	  p[0] = toReal( trace(A3 * A3)) / 6.0 - 0.125 * trA4 * trA2 - trA3 * trA3 / 18.0 + trA2 * trA2 * trA2/ 48.0;
+  	  p[1] = toReal( trace(A5)) / 5.0 - trA3 * trA2 / 6.0;
+  	  p[2] = toReal( trace(A4)) / 4.0 - 0.125 * trA2 * trA2;
+  	  p[3] = trA3 / 3.0;
+  	  p[4] = 0.5 * trA2;
+
+  	  qnold[0] = cN[Niter];
+  	  qnold[1] = 0.0;
+  	  qnold[2] = 0.0;
+  	  qnold[3] = 0.0;
+  	  qnold[4] = 0.0;
+  	  qnold[5] = 0.0;
+
+  	  for(int i = Niter-1; i >= 0; i--)
+  	  {
+  	   qn[0] = p[0] * qnold[5] + cN[i];
+  	   qn[1] = p[1] * qnold[5] + qnold[0];
+  	   qn[2] = p[2] * qnold[5] + qnold[1];
+  	   qn[3] = p[3] * qnold[5] + qnold[2];
+  	   qn[4] = p[4] * qnold[5] + qnold[3];
+  	   qn[5] = qnold[4];
+
+  	   qnold[0] = qn[0];
+  	   qnold[1] = qn[1];
+  	   qnold[2] = qn[2];
+  	   qnold[3] = qn[3];
+  	   qnold[4] = qn[4];
+  	   qnold[5] = qn[5];
+  	  }
+
+  	  mat unit(1.0);
+
+  	  dest = (qn[0] * unit + qn[1] * alpha * arg + qn[2] * A2 + qn[3] * A3 + qn[4] * A4 + qn[5] * A5);
+
+    }
+
+  static void Exponentiate_Clover(CloverDiagonalField& Diagonal, CloverTriangleField& Triangle, RealD csw_t, RealD diag_mass) {
+
+    GridBase* grid = Diagonal.Grid();
+    int NMAX = getNMAX(Diagonal, 3.*csw_t/diag_mass);
+
+    //
+    // Implementation completely in Daniel's layout
+    //
+
+    // Taylor expansion with Cayley-Hamilton recursion
+    // underlying Horner scheme as above
+    std::vector<RealD> cn(NMAX+1);
+    cn[0] = 1.0;
+    for (int i=1; i<=NMAX; i++){
+      cn[i] = cn[i-1] / RealD(i);
+    }
+
+      // Taken over from Daniel's implementation
+      conformable(Diagonal, Triangle);
+
+      long lsites = grid->lSites();
+    {
+      typedef typename SiteCloverDiagonal::scalar_object scalar_object_diagonal;
+      typedef typename SiteCloverTriangle::scalar_object scalar_object_triangle;
+      typedef iMatrix<ComplexD,6> mat;
+
+      autoView(diagonal_v,  Diagonal,  CpuRead);
+      autoView(triangle_v,  Triangle,  CpuRead);
+      autoView(diagonalExp_v, Diagonal, CpuWrite);
+      autoView(triangleExp_v, Triangle, CpuWrite);
+
+      thread_for(site, lsites, { // NOTE: Not on GPU because of (peek/poke)LocalSite
+
+    	  mat srcCloverOpUL(0.0); // upper left block
+    	  mat srcCloverOpLR(0.0); // lower right block
+    	  mat ExpCloverOp;
+
+        scalar_object_diagonal diagonal_tmp     = Zero();
+        scalar_object_diagonal diagonal_exp_tmp = Zero();
+        scalar_object_triangle triangle_tmp     = Zero();
+        scalar_object_triangle triangle_exp_tmp = Zero();
+
+        Coordinate lcoor;
+        grid->LocalIndexToLocalCoor(site, lcoor);
+
+        peekLocalSite(diagonal_tmp, diagonal_v, lcoor);
+        peekLocalSite(triangle_tmp, triangle_v, lcoor);
+
+        int block;
+        block = 0;
+        for(int i = 0; i < 6; i++){
+        	for(int j = 0; j < 6; j++){
+        		if (i == j){
+        			srcCloverOpUL(i,j) = static_cast<ComplexD>(TensorRemove(diagonal_tmp()(block)(i)));
+        		}
+        		else{
+        			srcCloverOpUL(i,j) = static_cast<ComplexD>(TensorRemove(CompactHelpers::triangle_elem(triangle_tmp, block, i, j)));
+        		}
+        	}
+        }
+        block = 1;
+        for(int i = 0; i < 6; i++){
+          	for(int j = 0; j < 6; j++){
+           		if (i == j){
+           			srcCloverOpLR(i,j) = static_cast<ComplexD>(TensorRemove(diagonal_tmp()(block)(i)));
+           		}
+           		else{
+           			srcCloverOpLR(i,j) = static_cast<ComplexD>(TensorRemove(CompactHelpers::triangle_elem(triangle_tmp, block, i, j)));
+           		}
+            }
+        }
+
+        // exp(Clover)
+
+        ExponentiateHermitean6by6(srcCloverOpUL,1.0/diag_mass,cn,NMAX,ExpCloverOp);
+
+        block = 0;
+        for(int i = 0; i < 6; i++){
+        	for(int j = 0; j < 6; j++){
+            	if (i == j){
+            		diagonal_exp_tmp()(block)(i) = ExpCloverOp(i,j);
+            	}
+            	else if(i < j){
+            		triangle_exp_tmp()(block)(CompactHelpers::triangle_index(i, j)) = ExpCloverOp(i,j);
+            	}
+           	}
+        }
+
+        ExponentiateHermitean6by6(srcCloverOpLR,1.0/diag_mass,cn,NMAX,ExpCloverOp);
+
+        block = 1;
+        for(int i = 0; i < 6; i++){
+        	for(int j = 0; j < 6; j++){
+              	if (i == j){
+              		diagonal_exp_tmp()(block)(i) = ExpCloverOp(i,j);
+               	}
+               	else if(i < j){
+               		triangle_exp_tmp()(block)(CompactHelpers::triangle_index(i, j)) = ExpCloverOp(i,j);
+               	}
+            }
+        }
+
+        pokeLocalSite(diagonal_exp_tmp, diagonalExp_v, lcoor);
+        pokeLocalSite(triangle_exp_tmp, triangleExp_v, lcoor);
+      });
+    }
+
+    Diagonal *= diag_mass;
+    Triangle *= diag_mass;
+  }
+
+
+  static GaugeLinkField Cmunu(std::vector<GaugeLinkField> &U, GaugeLinkField &lambda, int mu, int nu) {
+    assert(0);
+    return lambda;
+  }
+
+};
+
+
+NAMESPACE_END(Grid);

Grid/qcd/action/fermion/CompactWilsonCloverFermion.h

@@ -31,6 +31,7 @@
 
 #include <Grid/qcd/action/fermion/WilsonCloverTypes.h>
 #include <Grid/qcd/action/fermion/WilsonCloverHelpers.h>
+#include <Grid/qcd/action/fermion/CloverHelpers.h>
 
 NAMESPACE_BEGIN(Grid);
 
@@ -85,7 +86,7 @@ NAMESPACE_BEGIN(Grid);
 //           + (2 * 1 + 4 * 1/2) triangle parts = 4 triangle parts =  60 complex words per site
 //                                                                 =  84 complex words per site
 
-template<class Impl>
+template<class Impl, class CloverHelpers>
 class CompactWilsonCloverFermion : public WilsonFermion<Impl>,
                                    public WilsonCloverHelpers<Impl>,
                                    public CompactWilsonCloverHelpers<Impl> {

Grid/qcd/action/fermion/Fermion.h

@@ -138,38 +138,52 @@ typedef WilsonTMFermion<WilsonImplF> WilsonTMFermionF;
 typedef WilsonTMFermion<WilsonImplD> WilsonTMFermionD;
 
 // Clover fermions
-typedef WilsonCloverFermion<WilsonImplR> WilsonCloverFermionR;
+template <typename WImpl> using WilsonClover = WilsonCloverFermion<WImpl, CloverHelpers<WImpl>>;
-typedef WilsonCloverFermion<WilsonImplF> WilsonCloverFermionF;
+template <typename WImpl> using WilsonExpClover = WilsonCloverFermion<WImpl, ExpCloverHelpers<WImpl>>;
-typedef WilsonCloverFermion<WilsonImplD> WilsonCloverFermionD;
 
-typedef WilsonCloverFermion<WilsonAdjImplR> WilsonCloverAdjFermionR;
+typedef WilsonClover<WilsonImplR> WilsonCloverFermionR;
-typedef WilsonCloverFermion<WilsonAdjImplF> WilsonCloverAdjFermionF;
+typedef WilsonClover<WilsonImplF> WilsonCloverFermionF;
-typedef WilsonCloverFermion<WilsonAdjImplD> WilsonCloverAdjFermionD;
+typedef WilsonClover<WilsonImplD> WilsonCloverFermionD;
 
-typedef WilsonCloverFermion<WilsonTwoIndexSymmetricImplR> WilsonCloverTwoIndexSymmetricFermionR;
+typedef WilsonExpClover<WilsonImplR> WilsonExpCloverFermionR;
-typedef WilsonCloverFermion<WilsonTwoIndexSymmetricImplF> WilsonCloverTwoIndexSymmetricFermionF;
+typedef WilsonExpClover<WilsonImplF> WilsonExpCloverFermionF;
-typedef WilsonCloverFermion<WilsonTwoIndexSymmetricImplD> WilsonCloverTwoIndexSymmetricFermionD;
+typedef WilsonExpClover<WilsonImplD> WilsonExpCloverFermionD;
 
-typedef WilsonCloverFermion<WilsonTwoIndexAntiSymmetricImplR> WilsonCloverTwoIndexAntiSymmetricFermionR;
+typedef WilsonClover<WilsonAdjImplR> WilsonCloverAdjFermionR;
-typedef WilsonCloverFermion<WilsonTwoIndexAntiSymmetricImplF> WilsonCloverTwoIndexAntiSymmetricFermionF;
+typedef WilsonClover<WilsonAdjImplF> WilsonCloverAdjFermionF;
-typedef WilsonCloverFermion<WilsonTwoIndexAntiSymmetricImplD> WilsonCloverTwoIndexAntiSymmetricFermionD;
+typedef WilsonClover<WilsonAdjImplD> WilsonCloverAdjFermionD;
+
+typedef WilsonClover<WilsonTwoIndexSymmetricImplR> WilsonCloverTwoIndexSymmetricFermionR;
+typedef WilsonClover<WilsonTwoIndexSymmetricImplF> WilsonCloverTwoIndexSymmetricFermionF;
+typedef WilsonClover<WilsonTwoIndexSymmetricImplD> WilsonCloverTwoIndexSymmetricFermionD;
+
+typedef WilsonClover<WilsonTwoIndexAntiSymmetricImplR> WilsonCloverTwoIndexAntiSymmetricFermionR;
+typedef WilsonClover<WilsonTwoIndexAntiSymmetricImplF> WilsonCloverTwoIndexAntiSymmetricFermionF;
+typedef WilsonClover<WilsonTwoIndexAntiSymmetricImplD> WilsonCloverTwoIndexAntiSymmetricFermionD;
 
 // Compact Clover fermions
-typedef CompactWilsonCloverFermion<WilsonImplR> CompactWilsonCloverFermionR;
+template <typename WImpl> using CompactWilsonClover = CompactWilsonCloverFermion<WImpl, CompactCloverHelpers<WImpl>>;
-typedef CompactWilsonCloverFermion<WilsonImplF> CompactWilsonCloverFermionF;
+template <typename WImpl> using CompactWilsonExpClover = CompactWilsonCloverFermion<WImpl, CompactExpCloverHelpers<WImpl>>;
-typedef CompactWilsonCloverFermion<WilsonImplD> CompactWilsonCloverFermionD;
 
-typedef CompactWilsonCloverFermion<WilsonAdjImplR> CompactWilsonCloverAdjFermionR;
+typedef CompactWilsonClover<WilsonImplR> CompactWilsonCloverFermionR;
-typedef CompactWilsonCloverFermion<WilsonAdjImplF> CompactWilsonCloverAdjFermionF;
+typedef CompactWilsonClover<WilsonImplF> CompactWilsonCloverFermionF;
-typedef CompactWilsonCloverFermion<WilsonAdjImplD> CompactWilsonCloverAdjFermionD;
+typedef CompactWilsonClover<WilsonImplD> CompactWilsonCloverFermionD;
 
-typedef CompactWilsonCloverFermion<WilsonTwoIndexSymmetricImplR> CompactWilsonCloverTwoIndexSymmetricFermionR;
+typedef CompactWilsonExpClover<WilsonImplR> CompactWilsonExpCloverFermionR;
-typedef CompactWilsonCloverFermion<WilsonTwoIndexSymmetricImplF> CompactWilsonCloverTwoIndexSymmetricFermionF;
+typedef CompactWilsonExpClover<WilsonImplF> CompactWilsonExpCloverFermionF;
-typedef CompactWilsonCloverFermion<WilsonTwoIndexSymmetricImplD> CompactWilsonCloverTwoIndexSymmetricFermionD;
+typedef CompactWilsonExpClover<WilsonImplD> CompactWilsonExpCloverFermionD;
 
-typedef CompactWilsonCloverFermion<WilsonTwoIndexAntiSymmetricImplR> CompactWilsonCloverTwoIndexAntiSymmetricFermionR;
+typedef CompactWilsonClover<WilsonAdjImplR> CompactWilsonCloverAdjFermionR;
-typedef CompactWilsonCloverFermion<WilsonTwoIndexAntiSymmetricImplF> CompactWilsonCloverTwoIndexAntiSymmetricFermionF;
+typedef CompactWilsonClover<WilsonAdjImplF> CompactWilsonCloverAdjFermionF;
-typedef CompactWilsonCloverFermion<WilsonTwoIndexAntiSymmetricImplD> CompactWilsonCloverTwoIndexAntiSymmetricFermionD;
+typedef CompactWilsonClover<WilsonAdjImplD> CompactWilsonCloverAdjFermionD;
+
+typedef CompactWilsonClover<WilsonTwoIndexSymmetricImplR> CompactWilsonCloverTwoIndexSymmetricFermionR;
+typedef CompactWilsonClover<WilsonTwoIndexSymmetricImplF> CompactWilsonCloverTwoIndexSymmetricFermionF;
+typedef CompactWilsonClover<WilsonTwoIndexSymmetricImplD> CompactWilsonCloverTwoIndexSymmetricFermionD;
+
+typedef CompactWilsonClover<WilsonTwoIndexAntiSymmetricImplR> CompactWilsonCloverTwoIndexAntiSymmetricFermionR;
+typedef CompactWilsonClover<WilsonTwoIndexAntiSymmetricImplF> CompactWilsonCloverTwoIndexAntiSymmetricFermionF;
+typedef CompactWilsonClover<WilsonTwoIndexAntiSymmetricImplD> CompactWilsonCloverTwoIndexAntiSymmetricFermionD;
 
 // Domain Wall fermions
 typedef DomainWallFermion<WilsonImplR> DomainWallFermionR;

Grid/qcd/action/fermion/FermionOperator.h

@@ -49,6 +49,8 @@ public:
 
   virtual FermionField &tmp(void) = 0;
 
+  virtual void DirichletBlock(Coordinate & _Block) { assert(0); };
+  
   GridBase * Grid(void)   { return FermionGrid(); };   // this is all the linalg routines need to know
   GridBase * RedBlackGrid(void) { return FermionRedBlackGrid(); };
 

Grid/qcd/action/fermion/WilsonCloverFermion.h

@@ -32,6 +32,7 @@
 
 #include <Grid/qcd/action/fermion/WilsonCloverTypes.h>
 #include <Grid/qcd/action/fermion/WilsonCloverHelpers.h>
+#include <Grid/qcd/action/fermion/CloverHelpers.h>
 
 NAMESPACE_BEGIN(Grid);
 
@@ -51,7 +52,7 @@ NAMESPACE_BEGIN(Grid);
 // csw_r = csw_t to recover the isotropic version
 //////////////////////////////////////////////////////////////////
 
-template <class Impl>
+template<class Impl, class CloverHelpers>
 class WilsonCloverFermion : public WilsonFermion<Impl>,
                             public WilsonCloverHelpers<Impl>
 {

Grid/qcd/action/fermion/WilsonCloverHelpers.h

@@ -209,6 +209,8 @@ public:
 };
 
 
+////////////////////////////////////////////////////////
+
 template<class Impl> class CompactWilsonCloverHelpers {
 public:
 

Grid/qcd/action/fermion/WilsonCloverTypes.h

@@ -47,8 +47,6 @@ class CompactWilsonCloverTypes {
 public:
   INHERIT_IMPL_TYPES(Impl);
 
-  static_assert(Nd == 4 && Nc == 3 && Ns == 4 && Impl::Dimension == 3, "Wrong dimensions");
-
   static constexpr int Nred      = Nc * Nhs;        // 6
   static constexpr int Nblock    = Nhs;             // 2
   static constexpr int Ndiagonal = Nred;            // 6

Grid/qcd/action/fermion/WilsonFermion5D.h

@@ -75,6 +75,10 @@ public:
   FermionField _tmp;
   FermionField &tmp(void) { return _tmp; }
 
+  int Dirichlet;
+  Coordinate Block; 
+
+  /********** Deprecate timers **********/
   void Report(void);
   void ZeroCounters(void);
   double DhopCalls;
@@ -173,7 +177,18 @@ public:
 		  GridCartesian         &FourDimGrid,
 		  GridRedBlackCartesian &FourDimRedBlackGrid,
 		  double _M5,const ImplParams &p= ImplParams());
-    
+
+  virtual void DirichletBlock(Coordinate & block)
+  {
+    assert(block.size()==Nd+1);
+    if ( block[0] || block[1] || block[2] || block[3] || block[4] ){
+      Dirichlet = 1;
+      Block = block;
+      Stencil.DirichletBlock(block); 
+      StencilEven.DirichletBlock(block); 
+      StencilOdd.DirichletBlock(block);
+    }
+  }
   // Constructors
   /*
     WilsonFermion5D(int simd, 

Grid/qcd/action/fermion/implementation/CayleyFermion5DImplementation.h

@@ -47,7 +47,7 @@ CayleyFermion5D<Impl>::CayleyFermion5D(GaugeField &_Umu,
 			FiveDimRedBlackGrid,
 			FourDimGrid,
 			FourDimRedBlackGrid,_M5,p),
-  mass(_mass)
+  mass_plus(_mass), mass_minus(_mass)
 { 
 }
 
@@ -209,8 +209,8 @@ void CayleyFermion5D<Impl>::M5D   (const FermionField &psi, FermionField &chi)
 {
   int Ls=this->Ls;
   Vector<Coeff_t> diag (Ls,1.0);
-  Vector<Coeff_t> upper(Ls,-1.0); upper[Ls-1]=mass;
+  Vector<Coeff_t> upper(Ls,-1.0); upper[Ls-1]=mass_minus;
-  Vector<Coeff_t> lower(Ls,-1.0); lower[0]   =mass;
+  Vector<Coeff_t> lower(Ls,-1.0); lower[0]   =mass_plus;
   M5D(psi,chi,chi,lower,diag,upper);
 }
 template<class Impl>
@@ -220,8 +220,8 @@ void CayleyFermion5D<Impl>::Meooe5D    (const FermionField &psi, FermionField &D
   Vector<Coeff_t> diag = bs;
   Vector<Coeff_t> upper= cs;
   Vector<Coeff_t> lower= cs; 
-  upper[Ls-1]=-mass*upper[Ls-1];
+  upper[Ls-1]=-mass_minus*upper[Ls-1];
-  lower[0]   =-mass*lower[0];
+  lower[0]   =-mass_plus*lower[0];
   M5D(psi,psi,Din,lower,diag,upper);
 }
 // FIXME Redunant with the above routine; check this and eliminate
@@ -235,8 +235,8 @@ template<class Impl> void CayleyFermion5D<Impl>::Meo5D     (const FermionField &
     upper[i]=-ceo[i];
     lower[i]=-ceo[i];
   }
-  upper[Ls-1]=-mass*upper[Ls-1];
+  upper[Ls-1]=-mass_minus*upper[Ls-1];
-  lower[0]   =-mass*lower[0];
+  lower[0]   =-mass_plus*lower[0];
   M5D(psi,psi,chi,lower,diag,upper);
 }
 template<class Impl>
@@ -250,8 +250,8 @@ void CayleyFermion5D<Impl>::Mooee       (const FermionField &psi, FermionField &
     upper[i]=-cee[i];
     lower[i]=-cee[i];
   }
-  upper[Ls-1]=-mass*upper[Ls-1];
+  upper[Ls-1]=-mass_minus*upper[Ls-1];
-  lower[0]   =-mass*lower[0];
+  lower[0]   =-mass_plus*lower[0];
   M5D(psi,psi,chi,lower,diag,upper);
 }
 template<class Impl>
@@ -266,9 +266,9 @@ void CayleyFermion5D<Impl>::MooeeDag    (const FermionField &psi, FermionField &
     // Assemble the 5d matrix
     if ( s==0 ) {
       upper[s] = -cee[s+1] ;
-      lower[s] = mass*cee[Ls-1];
+      lower[s] = mass_minus*cee[Ls-1];
     } else if ( s==(Ls-1)) { 
-      upper[s] = mass*cee[0];
+      upper[s] = mass_plus*cee[0];
       lower[s] = -cee[s-1];
     } else {
       upper[s]=-cee[s+1];
@@ -291,8 +291,8 @@ void CayleyFermion5D<Impl>::M5Ddag (const FermionField &psi, FermionField &chi)
   Vector<Coeff_t> diag(Ls,1.0);
   Vector<Coeff_t> upper(Ls,-1.0);
   Vector<Coeff_t> lower(Ls,-1.0);
-  upper[Ls-1]=-mass*upper[Ls-1];
+  upper[Ls-1]=-mass_plus*upper[Ls-1];
-  lower[0]   =-mass*lower[0];
+  lower[0]   =-mass_minus*lower[0];
   M5Ddag(psi,chi,chi,lower,diag,upper);
 }
 
@@ -307,9 +307,9 @@ void CayleyFermion5D<Impl>::MeooeDag5D    (const FermionField &psi, FermionField
   for (int s=0;s<Ls;s++){
     if ( s== 0 ) {
       upper[s] = cs[s+1];
-      lower[s] =-mass*cs[Ls-1];
+      lower[s] =-mass_minus*cs[Ls-1];
     } else if ( s==(Ls-1) ) { 
-      upper[s] =-mass*cs[0];
+      upper[s] =-mass_plus*cs[0];
       lower[s] = cs[s-1];
     } else { 
       upper[s] = cs[s+1];
@@ -552,7 +552,7 @@ void CayleyFermion5D<Impl>::SetCoefficientsInternal(RealD zolo_hi,Vector<Coeff_t
       
       lee[i] =-cee[i+1]/bee[i]; // sub-diag entry on the ith column
       
-      leem[i]=mass*cee[Ls-1]/bee[0];
+      leem[i]=mass_minus*cee[Ls-1]/bee[0];
       for(int j=0;j<i;j++) {
 	assert(bee[j+1]!=Coeff_t(0.0));
 	leem[i]*= aee[j]/bee[j+1];
@@ -560,7 +560,7 @@ void CayleyFermion5D<Impl>::SetCoefficientsInternal(RealD zolo_hi,Vector<Coeff_t
       
       uee[i] =-aee[i]/bee[i];   // up-diag entry on the ith row
       
-      ueem[i]=mass;
+      ueem[i]=mass_plus;
       for(int j=1;j<=i;j++) ueem[i]*= cee[j]/bee[j];
       ueem[i]*= aee[0]/bee[0];
       
@@ -573,7 +573,7 @@ void CayleyFermion5D<Impl>::SetCoefficientsInternal(RealD zolo_hi,Vector<Coeff_t
   }
 	
   { 
-    Coeff_t delta_d=mass*cee[Ls-1];
+    Coeff_t delta_d=mass_minus*cee[Ls-1];
     for(int j=0;j<Ls-1;j++) {
       assert(bee[j] != Coeff_t(0.0));
       delta_d *= cee[j]/bee[j];
@@ -642,6 +642,10 @@ void CayleyFermion5D<Impl>::ContractConservedCurrent( PropagatorField &q_in_1,
 						      Current curr_type,
 						      unsigned int mu)
 {
+
+  assert(mass_plus == mass_minus);
+  RealD mass = mass_plus;
+  
 #if (!defined(GRID_HIP))
   Gamma::Algebra Gmu [] = {
     Gamma::Algebra::GammaX,
@@ -777,6 +781,8 @@ void CayleyFermion5D<Impl>::SeqConservedCurrent(PropagatorField &q_in,
   assert(mu>=0);
   assert(mu<Nd);
 
+  assert(mass_plus == mass_minus);
+  RealD mass = mass_plus;
 
 #if 0
   int tshift = (mu == Nd-1) ? 1 : 0;

Grid/qcd/action/fermion/implementation/CompactWilsonCloverFermionImplementation.h

@@ -32,17 +32,18 @@
 #include <Grid/qcd/spin/Dirac.h>
 #include <Grid/qcd/action/fermion/CompactWilsonCloverFermion.h>
 
+
 NAMESPACE_BEGIN(Grid);
-template<class Impl>
+template<class Impl, class CloverHelpers>
-CompactWilsonCloverFermion<Impl>::CompactWilsonCloverFermion(GaugeField& _Umu,
+CompactWilsonCloverFermion<Impl, CloverHelpers>::CompactWilsonCloverFermion(GaugeField& _Umu,
-                                                             GridCartesian& Fgrid,
+                                                                            GridCartesian& Fgrid,
-                                                             GridRedBlackCartesian& Hgrid,
+                                                                            GridRedBlackCartesian& Hgrid,
-                                                             const RealD _mass,
+                                                                            const RealD _mass,
-                                                             const RealD _csw_r,
+                                                                            const RealD _csw_r,
-                                                             const RealD _csw_t,
+                                                                            const RealD _csw_t,
-                                                             const RealD _cF,
+                                                                            const RealD _cF,
-                                                             const WilsonAnisotropyCoefficients& clover_anisotropy,
+                                                                            const WilsonAnisotropyCoefficients& clover_anisotropy,
-                                                             const ImplParams& impl_p)
+                                                                            const ImplParams& impl_p)
   : WilsonBase(_Umu, Fgrid, Hgrid, _mass, impl_p, clover_anisotropy)
   , csw_r(_csw_r)
   , csw_t(_csw_t)
@@ -58,50 +59,55 @@ CompactWilsonCloverFermion<Impl>::CompactWilsonCloverFermion(GaugeField& _Umu,
   , BoundaryMask(&Fgrid)
   , BoundaryMaskEven(&Hgrid), BoundaryMaskOdd(&Hgrid)
 {
+  assert(Nd == 4 && Nc == 3 && Ns == 4 && Impl::Dimension == 3);
+
   csw_r *= 0.5;
   csw_t *= 0.5;
   if (clover_anisotropy.isAnisotropic)
     csw_r /= clover_anisotropy.xi_0;
 
   ImportGauge(_Umu);
-  if (open_boundaries)
+  if (open_boundaries) {
+    this->BoundaryMaskEven.Checkerboard() = Even;
+    this->BoundaryMaskOdd.Checkerboard() = Odd;
     CompactHelpers::SetupMasks(this->BoundaryMask, this->BoundaryMaskEven, this->BoundaryMaskOdd);
+  }
 }
 
-template<class Impl>
+template<class Impl, class CloverHelpers>
-void CompactWilsonCloverFermion<Impl>::Dhop(const FermionField& in, FermionField& out, int dag) {
+void CompactWilsonCloverFermion<Impl, CloverHelpers>::Dhop(const FermionField& in, FermionField& out, int dag) {
   WilsonBase::Dhop(in, out, dag);
   if(open_boundaries) ApplyBoundaryMask(out);
 }
 
-template<class Impl>
+template<class Impl, class CloverHelpers>
-void CompactWilsonCloverFermion<Impl>::DhopOE(const FermionField& in, FermionField& out, int dag) {
+void CompactWilsonCloverFermion<Impl, CloverHelpers>::DhopOE(const FermionField& in, FermionField& out, int dag) {
   WilsonBase::DhopOE(in, out, dag);
   if(open_boundaries) ApplyBoundaryMask(out);
 }
 
-template<class Impl>
+template<class Impl, class CloverHelpers>
-void CompactWilsonCloverFermion<Impl>::DhopEO(const FermionField& in, FermionField& out, int dag) {
+void CompactWilsonCloverFermion<Impl, CloverHelpers>::DhopEO(const FermionField& in, FermionField& out, int dag) {
   WilsonBase::DhopEO(in, out, dag);
   if(open_boundaries) ApplyBoundaryMask(out);
 }
 
-template<class Impl>
+template<class Impl, class CloverHelpers>
-void CompactWilsonCloverFermion<Impl>::DhopDir(const FermionField& in, FermionField& out, int dir, int disp) {
+void CompactWilsonCloverFermion<Impl, CloverHelpers>::DhopDir(const FermionField& in, FermionField& out, int dir, int disp) {
   WilsonBase::DhopDir(in, out, dir, disp);
   if(this->open_boundaries) ApplyBoundaryMask(out);
 }
 
-template<class Impl>
+template<class Impl, class CloverHelpers>
-void CompactWilsonCloverFermion<Impl>::DhopDirAll(const FermionField& in, std::vector<FermionField>& out) {
+void CompactWilsonCloverFermion<Impl, CloverHelpers>::DhopDirAll(const FermionField& in, std::vector<FermionField>& out) {
   WilsonBase::DhopDirAll(in, out);
   if(this->open_boundaries) {
     for(auto& o : out) ApplyBoundaryMask(o);
   }
 }
 
-template<class Impl>
+template<class Impl, class CloverHelpers>
-void CompactWilsonCloverFermion<Impl>::M(const FermionField& in, FermionField& out) {
+void CompactWilsonCloverFermion<Impl, CloverHelpers>::M(const FermionField& in, FermionField& out) {
   out.Checkerboard() = in.Checkerboard();
   WilsonBase::Dhop(in, out, DaggerNo); // call base to save applying bc
   Mooee(in, Tmp);
@@ -109,8 +115,8 @@ void CompactWilsonCloverFermion<Impl>::M(const FermionField& in, FermionField& o
   if(open_boundaries) ApplyBoundaryMask(out);
 }
 
-template<class Impl>
+template<class Impl, class CloverHelpers>
-void CompactWilsonCloverFermion<Impl>::Mdag(const FermionField& in, FermionField& out) {
+void CompactWilsonCloverFermion<Impl, CloverHelpers>::Mdag(const FermionField& in, FermionField& out) {
   out.Checkerboard() = in.Checkerboard();
   WilsonBase::Dhop(in, out, DaggerYes);  // call base to save applying bc
   MooeeDag(in, Tmp);
@@ -118,20 +124,20 @@ void CompactWilsonCloverFermion<Impl>::Mdag(const FermionField& in, FermionField
   if(open_boundaries) ApplyBoundaryMask(out);
 }
 
-template<class Impl>
+template<class Impl, class CloverHelpers>
-void CompactWilsonCloverFermion<Impl>::Meooe(const FermionField& in, FermionField& out) {
+void CompactWilsonCloverFermion<Impl, CloverHelpers>::Meooe(const FermionField& in, FermionField& out) {
   WilsonBase::Meooe(in, out);
   if(open_boundaries) ApplyBoundaryMask(out);
 }
 
-template<class Impl>
+template<class Impl, class CloverHelpers>
-void CompactWilsonCloverFermion<Impl>::MeooeDag(const FermionField& in, FermionField& out) {
+void CompactWilsonCloverFermion<Impl, CloverHelpers>::MeooeDag(const FermionField& in, FermionField& out) {
   WilsonBase::MeooeDag(in, out);
   if(open_boundaries) ApplyBoundaryMask(out);
 }
 
-template<class Impl>
+template<class Impl, class CloverHelpers>
-void CompactWilsonCloverFermion<Impl>::Mooee(const FermionField& in, FermionField& out) {
+void CompactWilsonCloverFermion<Impl, CloverHelpers>::Mooee(const FermionField& in, FermionField& out) {
   if(in.Grid()->_isCheckerBoarded) {
     if(in.Checkerboard() == Odd) {
       MooeeInternal(in, out, DiagonalOdd, TriangleOdd);
@@ -144,13 +150,13 @@ void CompactWilsonCloverFermion<Impl>::Mooee(const FermionField& in, FermionFiel
   if(open_boundaries) ApplyBoundaryMask(out);
 }
 
-template<class Impl>
+template<class Impl, class CloverHelpers>
-void CompactWilsonCloverFermion<Impl>::MooeeDag(const FermionField& in, FermionField& out) {
+void CompactWilsonCloverFermion<Impl, CloverHelpers>::MooeeDag(const FermionField& in, FermionField& out) {
   Mooee(in, out); // blocks are hermitian
 }
 
-template<class Impl>
+template<class Impl, class CloverHelpers>
-void CompactWilsonCloverFermion<Impl>::MooeeInv(const FermionField& in, FermionField& out) {
+void CompactWilsonCloverFermion<Impl, CloverHelpers>::MooeeInv(const FermionField& in, FermionField& out) {
   if(in.Grid()->_isCheckerBoarded) {
     if(in.Checkerboard() == Odd) {
       MooeeInternal(in, out, DiagonalInvOdd, TriangleInvOdd);
@@ -163,23 +169,23 @@ void CompactWilsonCloverFermion<Impl>::MooeeInv(const FermionField& in, FermionF
   if(open_boundaries) ApplyBoundaryMask(out);
 }
 
-template<class Impl>
+template<class Impl, class CloverHelpers>
-void CompactWilsonCloverFermion<Impl>::MooeeInvDag(const FermionField& in, FermionField& out) {
+void CompactWilsonCloverFermion<Impl, CloverHelpers>::MooeeInvDag(const FermionField& in, FermionField& out) {
   MooeeInv(in, out); // blocks are hermitian
 }
 
-template<class Impl>
+template<class Impl, class CloverHelpers>
-void CompactWilsonCloverFermion<Impl>::Mdir(const FermionField& in, FermionField& out, int dir, int disp) {
+void CompactWilsonCloverFermion<Impl, CloverHelpers>::Mdir(const FermionField& in, FermionField& out, int dir, int disp) {
   DhopDir(in, out, dir, disp);
 }
 
-template<class Impl>
+template<class Impl, class CloverHelpers>
-void CompactWilsonCloverFermion<Impl>::MdirAll(const FermionField& in, std::vector<FermionField>& out) {
+void CompactWilsonCloverFermion<Impl, CloverHelpers>::MdirAll(const FermionField& in, std::vector<FermionField>& out) {
   DhopDirAll(in, out);
 }
 
-template<class Impl>
+template<class Impl, class CloverHelpers>
-void CompactWilsonCloverFermion<Impl>::MDeriv(GaugeField& force, const FermionField& X, const FermionField& Y, int dag) {
+void CompactWilsonCloverFermion<Impl, CloverHelpers>::MDeriv(GaugeField& force, const FermionField& X, const FermionField& Y, int dag) {
   assert(!open_boundaries); // TODO check for changes required for open bc
 
   // NOTE: code copied from original clover term
@@ -251,7 +257,7 @@ void CompactWilsonCloverFermion<Impl>::MDeriv(GaugeField& force, const FermionFi
       }
       PropagatorField Slambda = Gamma(sigma[count]) * Lambda; // sigma checked
       Impl::TraceSpinImpl(lambda, Slambda);                   // traceSpin ok
-      force_mu -= factor*Helpers::Cmunu(U, lambda, mu, nu);   // checked
+      force_mu -= factor*CloverHelpers::Cmunu(U, lambda, mu, nu);   // checked
       count++;
     }
 
@@ -261,18 +267,18 @@ void CompactWilsonCloverFermion<Impl>::MDeriv(GaugeField& force, const FermionFi
   force += clover_force;
 }
 
-template<class Impl>
+template<class Impl, class CloverHelpers>
-void CompactWilsonCloverFermion<Impl>::MooDeriv(GaugeField& mat, const FermionField& U, const FermionField& V, int dag) {
+void CompactWilsonCloverFermion<Impl, CloverHelpers>::MooDeriv(GaugeField& mat, const FermionField& U, const FermionField& V, int dag) {
   assert(0);
 }
 
-template<class Impl>
+template<class Impl, class CloverHelpers>
-void CompactWilsonCloverFermion<Impl>::MeeDeriv(GaugeField& mat, const FermionField& U, const FermionField& V, int dag) {
+void CompactWilsonCloverFermion<Impl, CloverHelpers>::MeeDeriv(GaugeField& mat, const FermionField& U, const FermionField& V, int dag) {
   assert(0);
 }
 
-template<class Impl>
+template<class Impl, class CloverHelpers>
-void CompactWilsonCloverFermion<Impl>::MooeeInternal(const FermionField&        in,
+void CompactWilsonCloverFermion<Impl, CloverHelpers>::MooeeInternal(const FermionField&        in,
                     FermionField&              out,
                     const CloverDiagonalField& diagonal,
                     const CloverTriangleField& triangle) {
@@ -285,8 +291,8 @@ void CompactWilsonCloverFermion<Impl>::MooeeInternal(const FermionField&
   CompactHelpers::MooeeKernel(diagonal.oSites(), 1, in, out, diagonal, triangle);
 }
 
-template<class Impl>
+template<class Impl, class CloverHelpers>
-void CompactWilsonCloverFermion<Impl>::ImportGauge(const GaugeField& _Umu) {
+void CompactWilsonCloverFermion<Impl, CloverHelpers>::ImportGauge(const GaugeField& _Umu) {
   // NOTE: parts copied from original implementation
 
   // Import gauge into base class
@@ -318,22 +324,27 @@ void CompactWilsonCloverFermion<Impl>::ImportGauge(const GaugeField& _Umu) {
   TmpOriginal += Helpers::fillCloverXT(Ex) * csw_t;
   TmpOriginal += Helpers::fillCloverYT(Ey) * csw_t;
   TmpOriginal += Helpers::fillCloverZT(Ez) * csw_t;
-  TmpOriginal += this->diag_mass;
+  // Handle mass term based on clover policy
-
+  CloverHelpers::MassTerm(TmpOriginal, this->diag_mass);
+  
   // Convert the data layout of the clover term
   double t4 = usecond();
   CompactHelpers::ConvertLayout(TmpOriginal, Diagonal, Triangle);
 
-  // Possible modify the boundary values
+  // Exponentiate the clover (nothing happens in case of the standard clover)
   double t5 = usecond();
+  CloverHelpers::Exponentiate_Clover(Diagonal, Triangle, csw_t, this->diag_mass);
+
+  // Possible modify the boundary values
+  double t6 = usecond();
   if(open_boundaries) CompactHelpers::ModifyBoundaries(Diagonal, Triangle, csw_t, cF, this->diag_mass);
 
-  // Invert the clover term in the improved layout
+  // Invert the Clover term (explicit inversion needed for the improvement in case of open boundary conditions)
-  double t6 = usecond();
+  double t7 = usecond();
   CompactHelpers::Invert(Diagonal, Triangle, DiagonalInv, TriangleInv);
 
   // Fill the remaining clover fields
-  double t7 = usecond();
+  double t8 = usecond();
   pickCheckerboard(Even, DiagonalEven,    Diagonal);
   pickCheckerboard(Even, TriangleEven,    Triangle);
   pickCheckerboard(Odd,  DiagonalOdd,     Diagonal);
@@ -344,20 +355,19 @@ void CompactWilsonCloverFermion<Impl>::ImportGauge(const GaugeField& _Umu) {
   pickCheckerboard(Odd,  TriangleInvOdd,  TriangleInv);
 
   // Report timings
-  double t8 = usecond();
+  double t9 = usecond();
-#if 0
+
-  std::cout << GridLogMessage << "CompactWilsonCloverFermion::ImportGauge timings:"
+  std::cout << GridLogDebug << "CompactWilsonCloverFermion::ImportGauge timings:" << std::endl;
-            << " WilsonFermion::Importgauge = " << (t1 - t0) / 1e6
+  std::cout << GridLogDebug << "WilsonFermion::Importgauge = " << (t1 - t0) / 1e6 << std::endl;
-            << ", allocations = "               << (t2 - t1) / 1e6
+  std::cout << GridLogDebug << "allocations =                " << (t2 - t1) / 1e6 << std::endl;
-            << ", field strength = "            << (t3 - t2) / 1e6
+  std::cout << GridLogDebug << "field strength =             " << (t3 - t2) / 1e6 << std::endl;
-            << ", fill clover = "               << (t4 - t3) / 1e6
+  std::cout << GridLogDebug << "fill clover =                " << (t4 - t3) / 1e6 << std::endl;
-            << ", convert = "                   << (t5 - t4) / 1e6
+  std::cout << GridLogDebug << "convert =                    " << (t5 - t4) / 1e6 << std::endl;
-            << ", boundaries = "                << (t6 - t5) / 1e6
+  std::cout << GridLogDebug << "exponentiation =             " << (t6 - t5) / 1e6 << std::endl;
-            << ", inversions = "                << (t7 - t6) / 1e6
+  std::cout << GridLogDebug << "boundaries =                 " << (t7 - t6) / 1e6 << std::endl;
-            << ", pick cbs = "                  << (t8 - t7) / 1e6
+  std::cout << GridLogDebug << "inversions =                 " << (t8 - t7) / 1e6 << std::endl;
-            << ", total = "                     << (t8 - t0) / 1e6
+  std::cout << GridLogDebug << "pick cbs =                   " << (t9 - t8) / 1e6 << std::endl;
-            << std::endl;
+  std::cout << GridLogDebug << "total =                      " << (t9 - t0) / 1e6 << std::endl;
-#endif
 }
 
 NAMESPACE_END(Grid);

Grid/qcd/action/fermion/implementation/WilsonCloverFermionImplementation.h

@@ -34,8 +34,8 @@
 
 NAMESPACE_BEGIN(Grid);
 
-template<class Impl>
+template<class Impl, class CloverHelpers>
-WilsonCloverFermion<Impl>::WilsonCloverFermion(GaugeField&                         _Umu,
+WilsonCloverFermion<Impl, CloverHelpers>::WilsonCloverFermion(GaugeField&                         _Umu,
                                                GridCartesian&                      Fgrid,
                                                GridRedBlackCartesian&              Hgrid,
                                                const RealD                         _mass,
@@ -74,8 +74,8 @@ WilsonCloverFermion<Impl>::WilsonCloverFermion(GaugeField&
 }
 
 // *NOT* EO
-template <class Impl>
+template<class Impl, class CloverHelpers>
-void WilsonCloverFermion<Impl>::M(const FermionField &in, FermionField &out)
+void WilsonCloverFermion<Impl, CloverHelpers>::M(const FermionField &in, FermionField &out)
 {
   FermionField temp(out.Grid());
 
@@ -89,8 +89,8 @@ void WilsonCloverFermion<Impl>::M(const FermionField &in, FermionField &out)
   out += temp;
 }
 
-template <class Impl>
+template<class Impl, class CloverHelpers>
-void WilsonCloverFermion<Impl>::Mdag(const FermionField &in, FermionField &out)
+void WilsonCloverFermion<Impl, CloverHelpers>::Mdag(const FermionField &in, FermionField &out)
 {
   FermionField temp(out.Grid());
 
@@ -104,8 +104,8 @@ void WilsonCloverFermion<Impl>::Mdag(const FermionField &in, FermionField &out)
   out += temp;
 }
 
-template <class Impl>
+template<class Impl, class CloverHelpers>
-void WilsonCloverFermion<Impl>::ImportGauge(const GaugeField &_Umu)
+void WilsonCloverFermion<Impl, CloverHelpers>::ImportGauge(const GaugeField &_Umu)
 {
   double t0 = usecond();
   WilsonFermion<Impl>::ImportGauge(_Umu);
@@ -131,47 +131,11 @@ void WilsonCloverFermion<Impl>::ImportGauge(const GaugeField &_Umu)
   CloverTerm += Helpers::fillCloverXT(Ex) * csw_t;
   CloverTerm += Helpers::fillCloverYT(Ey) * csw_t;
   CloverTerm += Helpers::fillCloverZT(Ez) * csw_t;
-  CloverTerm += diag_mass;
+   
-
   double t4 = usecond();
-  int lvol = _Umu.Grid()->lSites();
+  CloverHelpers::Instantiate(CloverTerm, CloverTermInv, csw_t, this->diag_mass);
-  int DimRep = Impl::Dimension;
 
   double t5 = usecond();
-  {
-    autoView(CTv,CloverTerm,CpuRead);
-    autoView(CTIv,CloverTermInv,CpuWrite);
-    thread_for(site, lvol, {
-      Coordinate lcoor;
-      grid->LocalIndexToLocalCoor(site, lcoor);
-      Eigen::MatrixXcd EigenCloverOp = Eigen::MatrixXcd::Zero(Ns * DimRep, Ns * DimRep);
-      Eigen::MatrixXcd EigenInvCloverOp = Eigen::MatrixXcd::Zero(Ns * DimRep, Ns * DimRep);
-      typename SiteClover::scalar_object Qx = Zero(), Qxinv = Zero();
-      peekLocalSite(Qx, CTv, lcoor);
-      //if (csw!=0){
-      for (int j = 0; j < Ns; j++)
-	for (int k = 0; k < Ns; k++)
-	  for (int a = 0; a < DimRep; a++)
-	    for (int b = 0; b < DimRep; b++){
-	      auto zz =  Qx()(j, k)(a, b);
-	      EigenCloverOp(a + j * DimRep, b + k * DimRep) = std::complex<double>(zz);
-	    }
-      //   if (site==0) std::cout << "site =" << site << "\n" << EigenCloverOp << std::endl;
-      
-      EigenInvCloverOp = EigenCloverOp.inverse();
-      //std::cout << EigenInvCloverOp << std::endl;
-      for (int j = 0; j < Ns; j++)
-	for (int k = 0; k < Ns; k++)
-	  for (int a = 0; a < DimRep; a++)
-	    for (int b = 0; b < DimRep; b++)
-	      Qxinv()(j, k)(a, b) = EigenInvCloverOp(a + j * DimRep, b + k * DimRep);
-      //    if (site==0) std::cout << "site =" << site << "\n" << EigenInvCloverOp << std::endl;
-      //  }
-      pokeLocalSite(Qxinv, CTIv, lcoor);
-    });
-  }
-
-  double t6 = usecond();
   // Separate the even and odd parts
   pickCheckerboard(Even, CloverTermEven, CloverTerm);
   pickCheckerboard(Odd, CloverTermOdd, CloverTerm);
@@ -184,48 +148,44 @@ void WilsonCloverFermion<Impl>::ImportGauge(const GaugeField &_Umu)
 
   pickCheckerboard(Even, CloverTermInvDagEven, adj(CloverTermInv));
   pickCheckerboard(Odd, CloverTermInvDagOdd, adj(CloverTermInv));
-  double t7 = usecond();
+  double t6 = usecond();
 
-#if 0
+  std::cout << GridLogDebug << "WilsonCloverFermion::ImportGauge timings:" << std::endl;
-  std::cout << GridLogMessage << "WilsonCloverFermion::ImportGauge timings:"
+  std::cout << GridLogDebug << "WilsonFermion::Importgauge = " << (t1 - t0) / 1e6 << std::endl;
-            << " WilsonFermion::Importgauge = " << (t1 - t0) / 1e6
+  std::cout << GridLogDebug << "allocations =                " << (t2 - t1) / 1e6 << std::endl;
-            << ", allocations = "               << (t2 - t1) / 1e6
+  std::cout << GridLogDebug << "field strength =             " << (t3 - t2) / 1e6 << std::endl;
-            << ", field strength = "            << (t3 - t2) / 1e6
+  std::cout << GridLogDebug << "fill clover =                " << (t4 - t3) / 1e6 << std::endl;
-            << ", fill clover = "               << (t4 - t3) / 1e6
+  std::cout << GridLogDebug << "instantiation =              " << (t5 - t4) / 1e6 << std::endl;
-            << ", misc = "                      << (t5 - t4) / 1e6
+  std::cout << GridLogDebug << "pick cbs =                   " << (t6 - t5) / 1e6 << std::endl;
-            << ", inversions = "                << (t6 - t5) / 1e6
+  std::cout << GridLogDebug << "total =                      " << (t6 - t0) / 1e6 << std::endl;
-            << ", pick cbs = "                  << (t7 - t6) / 1e6
-            << ", total = "                     << (t7 - t0) / 1e6
-            << std::endl;
-#endif
 }
 
-template <class Impl>
+template<class Impl, class CloverHelpers>
-void WilsonCloverFermion<Impl>::Mooee(const FermionField &in, FermionField &out)
+void WilsonCloverFermion<Impl, CloverHelpers>::Mooee(const FermionField &in, FermionField &out)
 {
   this->MooeeInternal(in, out, DaggerNo, InverseNo);
 }
 
-template <class Impl>
+template<class Impl, class CloverHelpers>
-void WilsonCloverFermion<Impl>::MooeeDag(const FermionField &in, FermionField &out)
+void WilsonCloverFermion<Impl, CloverHelpers>::MooeeDag(const FermionField &in, FermionField &out)
 {
   this->MooeeInternal(in, out, DaggerYes, InverseNo);
 }
 
-template <class Impl>
+template<class Impl, class CloverHelpers>
-void WilsonCloverFermion<Impl>::MooeeInv(const FermionField &in, FermionField &out)
+void WilsonCloverFermion<Impl, CloverHelpers>::MooeeInv(const FermionField &in, FermionField &out)
 {
   this->MooeeInternal(in, out, DaggerNo, InverseYes);
 }
 
-template <class Impl>
+template<class Impl, class CloverHelpers>
-void WilsonCloverFermion<Impl>::MooeeInvDag(const FermionField &in, FermionField &out)
+void WilsonCloverFermion<Impl, CloverHelpers>::MooeeInvDag(const FermionField &in, FermionField &out)
 {
   this->MooeeInternal(in, out, DaggerYes, InverseYes);
 }
 
-template <class Impl>
+template<class Impl, class CloverHelpers>
-void WilsonCloverFermion<Impl>::MooeeInternal(const FermionField &in, FermionField &out, int dag, int inv)
+void WilsonCloverFermion<Impl, CloverHelpers>::MooeeInternal(const FermionField &in, FermionField &out, int dag, int inv)
 {
   out.Checkerboard() = in.Checkerboard();
   CloverField *Clover;
@@ -278,8 +238,8 @@ void WilsonCloverFermion<Impl>::MooeeInternal(const FermionField &in, FermionFie
 } // MooeeInternal
 
 // Derivative parts unpreconditioned pseudofermions
-template <class Impl>
+template<class Impl, class CloverHelpers>
-void WilsonCloverFermion<Impl>::MDeriv(GaugeField &force, const FermionField &X, const FermionField &Y, int dag)
+void WilsonCloverFermion<Impl, CloverHelpers>::MDeriv(GaugeField &force, const FermionField &X, const FermionField &Y, int dag)
 {
   conformable(X.Grid(), Y.Grid());
   conformable(X.Grid(), force.Grid());
@@ -349,7 +309,7 @@ void WilsonCloverFermion<Impl>::MDeriv(GaugeField &force, const FermionField &X,
       }
       PropagatorField Slambda = Gamma(sigma[count]) * Lambda; // sigma checked
       Impl::TraceSpinImpl(lambda, Slambda);                   // traceSpin ok
-      force_mu -= factor*Helpers::Cmunu(U, lambda, mu, nu);                   // checked
+      force_mu -= factor*CloverHelpers::Cmunu(U, lambda, mu, nu);                   // checked
       count++;
     }
 
@@ -360,15 +320,15 @@ void WilsonCloverFermion<Impl>::MDeriv(GaugeField &force, const FermionField &X,
 }
 
 // Derivative parts
-template <class Impl>
+template<class Impl, class CloverHelpers>
-void WilsonCloverFermion<Impl>::MooDeriv(GaugeField &mat, const FermionField &X, const FermionField &Y, int dag)
+void WilsonCloverFermion<Impl, CloverHelpers>::MooDeriv(GaugeField &mat, const FermionField &X, const FermionField &Y, int dag)
 {
   assert(0);
 }
 
 // Derivative parts
-template <class Impl>
+template<class Impl, class CloverHelpers>
-void WilsonCloverFermion<Impl>::MeeDeriv(GaugeField &mat, const FermionField &U, const FermionField &V, int dag)
+void WilsonCloverFermion<Impl, CloverHelpers>::MeeDeriv(GaugeField &mat, const FermionField &U, const FermionField &V, int dag)
 {
   assert(0); // not implemented yet
 }

Grid/qcd/action/fermion/implementation/WilsonFermion5DImplementation.h

@@ -60,7 +60,8 @@ WilsonFermion5D<Impl>::WilsonFermion5D(GaugeField &_Umu,
   UmuOdd (_FourDimRedBlackGrid),
   Lebesgue(_FourDimGrid),
   LebesgueEvenOdd(_FourDimRedBlackGrid),
-  _tmp(&FiveDimRedBlackGrid)
+  _tmp(&FiveDimRedBlackGrid),
+  Dirichlet(0)
 {
   // some assertions
   assert(FiveDimGrid._ndimension==5);
@@ -218,6 +219,14 @@ void WilsonFermion5D<Impl>::ImportGauge(const GaugeField &_Umu)
 {
   GaugeField HUmu(_Umu.Grid());
   HUmu = _Umu*(-0.5);
+  if ( Dirichlet ) {
+    std::cout << GridLogMessage << " Dirichlet BCs 5d " <<Block<<std::endl;
+    Coordinate GaugeBlock(Nd);
+    for(int d=0;d<Nd;d++) GaugeBlock[d] = Block[d+1];
+    std::cout << GridLogMessage << " Dirichlet BCs 4d " <<GaugeBlock<<std::endl;
+    DirichletFilter<GaugeField> Filter(GaugeBlock);
+    Filter.applyFilter(HUmu);
+  }
   Impl::DoubleStore(GaugeGrid(),Umu,HUmu);
   pickCheckerboard(Even,UmuEven,Umu);
   pickCheckerboard(Odd ,UmuOdd,Umu);

Grid/qcd/action/fermion/implementation/WilsonFermionImplementation.h

@@ -4,12 +4,13 @@ Grid physics library, www.github.com/paboyle/Grid
 
 Source file: ./lib/qcd/action/fermion/WilsonFermion.cc
 
-Copyright (C) 2015
+Copyright (C) 2022
 
 Author: Peter Boyle <pabobyle@ph.ed.ac.uk>
 Author: Peter Boyle <paboyle@ph.ed.ac.uk>
 Author: Peter Boyle <peterboyle@Peters-MacBook-Pro-2.local>
 Author: paboyle <paboyle@ph.ed.ac.uk>
+Author: Fabian Joswig <fabian.joswig@ed.ac.uk>
 
 This program is free software; you can redistribute it and/or modify
 it under the terms of the GNU General Public License as published by
@@ -599,11 +600,47 @@ void WilsonFermion<Impl>::ContractConservedCurrent(PropagatorField &q_in_1,
                                                    Current curr_type,
                                                    unsigned int mu)
 {
+  if(curr_type != Current::Vector)
+  {
+    std::cout << GridLogError << "Only the conserved vector current is implemented so far." << std::endl;
+    exit(1);
+  }
+
   Gamma g5(Gamma::Algebra::Gamma5);
   conformable(_grid, q_in_1.Grid());
   conformable(_grid, q_in_2.Grid());
   conformable(_grid, q_out.Grid());
-  assert(0);
+  auto UGrid= this->GaugeGrid();
+
+  PropagatorField tmp_shifted(UGrid);
+  PropagatorField g5Lg5(UGrid);
+  PropagatorField R(UGrid);
+  PropagatorField gmuR(UGrid);
+
+    Gamma::Algebra Gmu [] = {
+    Gamma::Algebra::GammaX,
+    Gamma::Algebra::GammaY,
+    Gamma::Algebra::GammaZ,
+    Gamma::Algebra::GammaT,
+  };
+  Gamma gmu=Gamma(Gmu[mu]);
+
+  g5Lg5=g5*q_in_1*g5;
+  tmp_shifted=Cshift(q_in_2,mu,1);
+  Impl::multLinkField(R,this->Umu,tmp_shifted,mu);
+  gmuR=gmu*R;
+
+  q_out=adj(g5Lg5)*R;
+  q_out-=adj(g5Lg5)*gmuR;
+
+  tmp_shifted=Cshift(q_in_1,mu,1);
+  Impl::multLinkField(g5Lg5,this->Umu,tmp_shifted,mu);
+  g5Lg5=g5*g5Lg5*g5;
+  R=q_in_2;
+  gmuR=gmu*R;
+
+  q_out-=adj(g5Lg5)*R;
+  q_out-=adj(g5Lg5)*gmuR;
 }
 
 
@@ -617,9 +654,51 @@ void WilsonFermion<Impl>::SeqConservedCurrent(PropagatorField &q_in,
                                               unsigned int tmax,
 					      ComplexField &lattice_cmplx)
 {
+  if(curr_type != Current::Vector)
+  {
+    std::cout << GridLogError << "Only the conserved vector current is implemented so far." << std::endl;
+    exit(1);
+  }
+
+  int tshift = (mu == Nd-1) ? 1 : 0;
+  unsigned int LLt    = GridDefaultLatt()[Tp];
   conformable(_grid, q_in.Grid());
   conformable(_grid, q_out.Grid());
-  assert(0);
+  auto UGrid= this->GaugeGrid();
+
+  PropagatorField tmp(UGrid);
+  PropagatorField Utmp(UGrid);
+  PropagatorField L(UGrid);
+  PropagatorField zz (UGrid);
+  zz=Zero();
+  LatticeInteger lcoor(UGrid); LatticeCoordinate(lcoor,Nd-1);
+
+    Gamma::Algebra Gmu [] = {
+    Gamma::Algebra::GammaX,
+    Gamma::Algebra::GammaY,
+    Gamma::Algebra::GammaZ,
+    Gamma::Algebra::GammaT,
+  };
+  Gamma gmu=Gamma(Gmu[mu]);
+
+  tmp = Cshift(q_in,mu,1);
+  Impl::multLinkField(Utmp,this->Umu,tmp,mu);
+  tmp = ( Utmp*lattice_cmplx - gmu*Utmp*lattice_cmplx ); // Forward hop
+  tmp = where((lcoor>=tmin),tmp,zz); // Mask the time
+  q_out = where((lcoor<=tmax),tmp,zz); // Position of current complicated
+
+  tmp = q_in *lattice_cmplx;
+  tmp = Cshift(tmp,mu,-1);
+  Impl::multLinkField(Utmp,this->Umu,tmp,mu+Nd); // Adjoint link
+  tmp = -( Utmp + gmu*Utmp );
+  // Mask the time
+  if (tmax == LLt - 1 && tshift == 1){ // quick fix to include timeslice 0 if tmax + tshift is over the last timeslice
+    unsigned int t0 = 0;
+    tmp = where(((lcoor==t0) || (lcoor>=tmin+tshift)),tmp,zz);
+  } else {
+    tmp = where((lcoor>=tmin+tshift),tmp,zz);
+  }
+  q_out+= where((lcoor<=tmax+tshift),tmp,zz); // Position of current complicated
 }
 
 NAMESPACE_END(Grid);

Grid/qcd/action/fermion/instantiation/CompactWilsonCloverFermionInstantiation.cc.master

@@ -9,6 +9,7 @@
     Author: paboyle <paboyle@ph.ed.ac.uk>
     Author: Guido Cossu <guido.cossu@ed.ac.uk>
     Author: Daniel Richtmann <daniel.richtmann@gmail.com>
+    Author: Mattia Bruno <mattia.bruno@cern.ch>
 
     This program is free software; you can redistribute it and/or modify
     it under the terms of the GNU General Public License as published by
@@ -32,10 +33,12 @@
 #include <Grid/qcd/spin/Dirac.h>
 #include <Grid/qcd/action/fermion/CompactWilsonCloverFermion.h>
 #include <Grid/qcd/action/fermion/implementation/CompactWilsonCloverFermionImplementation.h>
+#include <Grid/qcd/action/fermion/CloverHelpers.h>
 
 NAMESPACE_BEGIN(Grid);
 
 #include "impl.h"
-template class CompactWilsonCloverFermion<IMPLEMENTATION>; 
+template class CompactWilsonCloverFermion<IMPLEMENTATION, CompactCloverHelpers<IMPLEMENTATION>>; 
+template class CompactWilsonCloverFermion<IMPLEMENTATION, CompactExpCloverHelpers<IMPLEMENTATION>>; 
 
 NAMESPACE_END(Grid);

Grid/qcd/action/fermion/instantiation/WilsonAdjImplD/WilsonKernelsInstantiationWilsonAdjImplD.cc

@@ -1,51 +0,0 @@
-/*************************************************************************************
-
-Grid physics library, www.github.com/paboyle/Grid
-
-Source file: ./lib/qcd/action/fermion/WilsonKernels.cc
-
-Copyright (C) 2015, 2020
-
-Author: Peter Boyle <paboyle@ph.ed.ac.uk>
-Author: Peter Boyle <peterboyle@Peters-MacBook-Pro-2.local>
-Author: paboyle <paboyle@ph.ed.ac.uk>
-Author: Nils Meyer <nils.meyer@ur.de> Regensburg University
-
-This program is free software; you can redistribute it and/or modify
-it under the terms of the GNU General Public License as published by
-the Free Software Foundation; either version 2 of the License, or
-(at your option) any later version.
-
-This program is distributed in the hope that it will be useful,
-but WITHOUT ANY WARRANTY; without even the implied warranty of
-MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-GNU General Public License for more details.
-
-You should have received a copy of the GNU General Public License along
-with this program; if not, write to the Free Software Foundation, Inc.,
-51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
-
-See the full license in the file "LICENSE" in the top level distribution
-directory
-*************************************************************************************/
-/*  END LEGAL */
-#include <Grid/qcd/action/fermion/FermionCore.h>
-#include <Grid/qcd/action/fermion/implementation/WilsonKernelsImplementation.h>
-#include <Grid/qcd/action/fermion/implementation/WilsonKernelsHandImplementation.h>
-
-#ifndef AVX512
-#ifndef QPX
-#ifndef A64FX
-#ifndef A64FXFIXEDSIZE
-#include <Grid/qcd/action/fermion/implementation/WilsonKernelsAsmImplementation.h>
-#endif
-#endif
-#endif
-#endif
-
-NAMESPACE_BEGIN(Grid);
-
-#include "impl.h"
-template class WilsonKernels<IMPLEMENTATION>;
-
-NAMESPACE_END(Grid);

Grid/qcd/action/fermion/instantiation/WilsonAdjImplD/WilsonKernelsInstantiationWilsonAdjImplD.cc

@@ -0,0 +1 @@
+../WilsonKernelsInstantiation.cc.master

Grid/qcd/action/fermion/instantiation/WilsonAdjImplF/WilsonKernelsInstantiationWilsonAdjImplF.cc

@@ -1,51 +0,0 @@
-/*************************************************************************************
-
-Grid physics library, www.github.com/paboyle/Grid
-
-Source file: ./lib/qcd/action/fermion/WilsonKernels.cc
-
-Copyright (C) 2015, 2020
-
-Author: Peter Boyle <paboyle@ph.ed.ac.uk>
-Author: Peter Boyle <peterboyle@Peters-MacBook-Pro-2.local>
-Author: paboyle <paboyle@ph.ed.ac.uk>
-Author: Nils Meyer <nils.meyer@ur.de> Regensburg University
-
-This program is free software; you can redistribute it and/or modify
-it under the terms of the GNU General Public License as published by
-the Free Software Foundation; either version 2 of the License, or
-(at your option) any later version.
-
-This program is distributed in the hope that it will be useful,
-but WITHOUT ANY WARRANTY; without even the implied warranty of
-MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-GNU General Public License for more details.
-
-You should have received a copy of the GNU General Public License along
-with this program; if not, write to the Free Software Foundation, Inc.,
-51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
-
-See the full license in the file "LICENSE" in the top level distribution
-directory
-*************************************************************************************/
-/*  END LEGAL */
-#include <Grid/qcd/action/fermion/FermionCore.h>
-#include <Grid/qcd/action/fermion/implementation/WilsonKernelsImplementation.h>
-#include <Grid/qcd/action/fermion/implementation/WilsonKernelsHandImplementation.h>
-
-#ifndef AVX512
-#ifndef QPX
-#ifndef A64FX
-#ifndef A64FXFIXEDSIZE
-#include <Grid/qcd/action/fermion/implementation/WilsonKernelsAsmImplementation.h>
-#endif
-#endif
-#endif
-#endif
-
-NAMESPACE_BEGIN(Grid);
-
-#include "impl.h"
-template class WilsonKernels<IMPLEMENTATION>;
-
-NAMESPACE_END(Grid);

Grid/qcd/action/fermion/instantiation/WilsonAdjImplF/WilsonKernelsInstantiationWilsonAdjImplF.cc

@@ -0,0 +1 @@
+../WilsonKernelsInstantiation.cc.master

Grid/qcd/action/fermion/instantiation/WilsonCloverFermionInstantiation.cc.master

@@ -8,7 +8,8 @@
 
     Author: paboyle <paboyle@ph.ed.ac.uk>
     Author: Guido Cossu <guido.cossu@ed.ac.uk>
-
+    Author: Mattia Bruno <mattia.bruno@cern.ch>
+    
     This program is free software; you can redistribute it and/or modify
     it under the terms of the GNU General Public License as published by
     the Free Software Foundation; either version 2 of the License, or
@@ -31,10 +32,12 @@
 #include <Grid/qcd/spin/Dirac.h>
 #include <Grid/qcd/action/fermion/WilsonCloverFermion.h>
 #include <Grid/qcd/action/fermion/implementation/WilsonCloverFermionImplementation.h>
+#include <Grid/qcd/action/fermion/CloverHelpers.h>
 
 NAMESPACE_BEGIN(Grid);
 
 #include "impl.h"
-template class WilsonCloverFermion<IMPLEMENTATION>; 
+template class WilsonCloverFermion<IMPLEMENTATION, CloverHelpers<IMPLEMENTATION>>; 
+template class WilsonCloverFermion<IMPLEMENTATION, ExpCloverHelpers<IMPLEMENTATION>>; 
 
 NAMESPACE_END(Grid);

Grid/qcd/action/fermion/instantiation/WilsonImplD/WilsonKernelsInstantiationWilsonImplD.cc

@@ -1,51 +0,0 @@
-/*************************************************************************************
-
-Grid physics library, www.github.com/paboyle/Grid
-
-Source file: ./lib/qcd/action/fermion/WilsonKernels.cc
-
-Copyright (C) 2015, 2020
-
-Author: Peter Boyle <paboyle@ph.ed.ac.uk>
-Author: Peter Boyle <peterboyle@Peters-MacBook-Pro-2.local>
-Author: paboyle <paboyle@ph.ed.ac.uk>
-Author: Nils Meyer <nils.meyer@ur.de> Regensburg University
-
-This program is free software; you can redistribute it and/or modify
-it under the terms of the GNU General Public License as published by
-the Free Software Foundation; either version 2 of the License, or
-(at your option) any later version.
-
-This program is distributed in the hope that it will be useful,
-but WITHOUT ANY WARRANTY; without even the implied warranty of
-MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-GNU General Public License for more details.
-
-You should have received a copy of the GNU General Public License along
-with this program; if not, write to the Free Software Foundation, Inc.,
-51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
-
-See the full license in the file "LICENSE" in the top level distribution
-directory
-*************************************************************************************/
-/*  END LEGAL */
-#include <Grid/qcd/action/fermion/FermionCore.h>
-#include <Grid/qcd/action/fermion/implementation/WilsonKernelsImplementation.h>
-#include <Grid/qcd/action/fermion/implementation/WilsonKernelsHandImplementation.h>
-
-#ifndef AVX512
-#ifndef QPX
-#ifndef A64FX
-#ifndef A64FXFIXEDSIZE
-#include <Grid/qcd/action/fermion/implementation/WilsonKernelsAsmImplementation.h>
-#endif
-#endif
-#endif
-#endif
-
-NAMESPACE_BEGIN(Grid);
-
-#include "impl.h"
-template class WilsonKernels<IMPLEMENTATION>;
-
-NAMESPACE_END(Grid);

Grid/qcd/action/fermion/instantiation/WilsonImplD/WilsonKernelsInstantiationWilsonImplD.cc

@@ -0,0 +1 @@
+../WilsonKernelsInstantiation.cc.master

Grid/qcd/action/fermion/instantiation/WilsonImplF/WilsonKernelsInstantiationWilsonImplF.cc

@@ -1,51 +0,0 @@
-/*************************************************************************************
-
-Grid physics library, www.github.com/paboyle/Grid
-
-Source file: ./lib/qcd/action/fermion/WilsonKernels.cc
-
-Copyright (C) 2015, 2020
-
-Author: Peter Boyle <paboyle@ph.ed.ac.uk>
-Author: Peter Boyle <peterboyle@Peters-MacBook-Pro-2.local>
-Author: paboyle <paboyle@ph.ed.ac.uk>
-Author: Nils Meyer <nils.meyer@ur.de> Regensburg University
-
-This program is free software; you can redistribute it and/or modify
-it under the terms of the GNU General Public License as published by
-the Free Software Foundation; either version 2 of the License, or
-(at your option) any later version.
-
-This program is distributed in the hope that it will be useful,
-but WITHOUT ANY WARRANTY; without even the implied warranty of
-MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-GNU General Public License for more details.
-
-You should have received a copy of the GNU General Public License along
-with this program; if not, write to the Free Software Foundation, Inc.,
-51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
-
-See the full license in the file "LICENSE" in the top level distribution
-directory
-*************************************************************************************/
-/*  END LEGAL */
-#include <Grid/qcd/action/fermion/FermionCore.h>
-#include <Grid/qcd/action/fermion/implementation/WilsonKernelsImplementation.h>
-#include <Grid/qcd/action/fermion/implementation/WilsonKernelsHandImplementation.h>
-
-#ifndef AVX512
-#ifndef QPX
-#ifndef A64FX
-#ifndef A64FXFIXEDSIZE
-#include <Grid/qcd/action/fermion/implementation/WilsonKernelsAsmImplementation.h>
-#endif
-#endif
-#endif
-#endif
-
-NAMESPACE_BEGIN(Grid);
-
-#include "impl.h"
-template class WilsonKernels<IMPLEMENTATION>;
-
-NAMESPACE_END(Grid);

Grid/qcd/action/fermion/instantiation/WilsonImplF/WilsonKernelsInstantiationWilsonImplF.cc

@@ -0,0 +1 @@
+../WilsonKernelsInstantiation.cc.master

Grid/qcd/action/fermion/instantiation/WilsonTwoIndexAntiSymmetricImplD/WilsonKernelsInstantiationWilsonTwoIndexAntiSymmetricImplD.cc

@@ -1,51 +0,0 @@
-/*************************************************************************************
-
-Grid physics library, www.github.com/paboyle/Grid
-
-Source file: ./lib/qcd/action/fermion/WilsonKernels.cc
-
-Copyright (C) 2015, 2020
-
-Author: Peter Boyle <paboyle@ph.ed.ac.uk>
-Author: Peter Boyle <peterboyle@Peters-MacBook-Pro-2.local>
-Author: paboyle <paboyle@ph.ed.ac.uk>
-Author: Nils Meyer <nils.meyer@ur.de> Regensburg University
-
-This program is free software; you can redistribute it and/or modify
-it under the terms of the GNU General Public License as published by
-the Free Software Foundation; either version 2 of the License, or
-(at your option) any later version.
-
-This program is distributed in the hope that it will be useful,
-but WITHOUT ANY WARRANTY; without even the implied warranty of
-MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-GNU General Public License for more details.
-
-You should have received a copy of the GNU General Public License along
-with this program; if not, write to the Free Software Foundation, Inc.,
-51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
-
-See the full license in the file "LICENSE" in the top level distribution
-directory
-*************************************************************************************/
-/*  END LEGAL */
-#include <Grid/qcd/action/fermion/FermionCore.h>
-#include <Grid/qcd/action/fermion/implementation/WilsonKernelsImplementation.h>
-#include <Grid/qcd/action/fermion/implementation/WilsonKernelsHandImplementation.h>
-
-#ifndef AVX512
-#ifndef QPX
-#ifndef A64FX
-#ifndef A64FXFIXEDSIZE
-#include <Grid/qcd/action/fermion/implementation/WilsonKernelsAsmImplementation.h>
-#endif
-#endif
-#endif
-#endif
-
-NAMESPACE_BEGIN(Grid);
-
-#include "impl.h"
-template class WilsonKernels<IMPLEMENTATION>;
-
-NAMESPACE_END(Grid);

Grid/qcd/action/fermion/instantiation/WilsonTwoIndexAntiSymmetricImplD/WilsonKernelsInstantiationWilsonTwoIndexAntiSymmetricImplD.cc

@@ -0,0 +1 @@
+../WilsonKernelsInstantiation.cc.master

Grid/qcd/action/fermion/instantiation/WilsonTwoIndexAntiSymmetricImplF/WilsonKernelsInstantiationWilsonTwoIndexAntiSymmetricImplF.cc

@@ -1,51 +0,0 @@
-/*************************************************************************************
-
-Grid physics library, www.github.com/paboyle/Grid
-
-Source file: ./lib/qcd/action/fermion/WilsonKernels.cc
-
-Copyright (C) 2015, 2020
-
-Author: Peter Boyle <paboyle@ph.ed.ac.uk>
-Author: Peter Boyle <peterboyle@Peters-MacBook-Pro-2.local>
-Author: paboyle <paboyle@ph.ed.ac.uk>
-Author: Nils Meyer <nils.meyer@ur.de> Regensburg University
-
-This program is free software; you can redistribute it and/or modify
-it under the terms of the GNU General Public License as published by
-the Free Software Foundation; either version 2 of the License, or
-(at your option) any later version.
-
-This program is distributed in the hope that it will be useful,
-but WITHOUT ANY WARRANTY; without even the implied warranty of
-MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-GNU General Public License for more details.
-
-You should have received a copy of the GNU General Public License along
-with this program; if not, write to the Free Software Foundation, Inc.,
-51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
-
-See the full license in the file "LICENSE" in the top level distribution
-directory
-*************************************************************************************/
-/*  END LEGAL */
-#include <Grid/qcd/action/fermion/FermionCore.h>
-#include <Grid/qcd/action/fermion/implementation/WilsonKernelsImplementation.h>
-#include <Grid/qcd/action/fermion/implementation/WilsonKernelsHandImplementation.h>
-
-#ifndef AVX512
-#ifndef QPX
-#ifndef A64FX
-#ifndef A64FXFIXEDSIZE
-#include <Grid/qcd/action/fermion/implementation/WilsonKernelsAsmImplementation.h>
-#endif
-#endif
-#endif
-#endif
-
-NAMESPACE_BEGIN(Grid);
-
-#include "impl.h"
-template class WilsonKernels<IMPLEMENTATION>;
-
-NAMESPACE_END(Grid);

Grid/qcd/action/fermion/instantiation/WilsonTwoIndexAntiSymmetricImplF/WilsonKernelsInstantiationWilsonTwoIndexAntiSymmetricImplF.cc

@@ -0,0 +1 @@
+../WilsonKernelsInstantiation.cc.master

Grid/qcd/action/fermion/instantiation/WilsonTwoIndexSymmetricImplD/WilsonKernelsInstantiationWilsonTwoIndexSymmetricImplD.cc

@@ -1,51 +0,0 @@
-/*************************************************************************************
-
-Grid physics library, www.github.com/paboyle/Grid
-
-Source file: ./lib/qcd/action/fermion/WilsonKernels.cc
-
-Copyright (C) 2015, 2020
-
-Author: Peter Boyle <paboyle@ph.ed.ac.uk>
-Author: Peter Boyle <peterboyle@Peters-MacBook-Pro-2.local>
-Author: paboyle <paboyle@ph.ed.ac.uk>
-Author: Nils Meyer <nils.meyer@ur.de> Regensburg University
-
-This program is free software; you can redistribute it and/or modify
-it under the terms of the GNU General Public License as published by
-the Free Software Foundation; either version 2 of the License, or
-(at your option) any later version.
-
-This program is distributed in the hope that it will be useful,
-but WITHOUT ANY WARRANTY; without even the implied warranty of
-MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-GNU General Public License for more details.
-
-You should have received a copy of the GNU General Public License along
-with this program; if not, write to the Free Software Foundation, Inc.,
-51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
-
-See the full license in the file "LICENSE" in the top level distribution
-directory
-*************************************************************************************/
-/*  END LEGAL */
-#include <Grid/qcd/action/fermion/FermionCore.h>
-#include <Grid/qcd/action/fermion/implementation/WilsonKernelsImplementation.h>
-#include <Grid/qcd/action/fermion/implementation/WilsonKernelsHandImplementation.h>
-
-#ifndef AVX512
-#ifndef QPX
-#ifndef A64FX
-#ifndef A64FXFIXEDSIZE
-#include <Grid/qcd/action/fermion/implementation/WilsonKernelsAsmImplementation.h>
-#endif
-#endif
-#endif
-#endif
-
-NAMESPACE_BEGIN(Grid);
-
-#include "impl.h"
-template class WilsonKernels<IMPLEMENTATION>;
-
-NAMESPACE_END(Grid);

Grid/qcd/action/fermion/instantiation/WilsonTwoIndexSymmetricImplD/WilsonKernelsInstantiationWilsonTwoIndexSymmetricImplD.cc

@@ -0,0 +1 @@
+../WilsonKernelsInstantiation.cc.master

Grid/qcd/action/fermion/instantiation/WilsonTwoIndexSymmetricImplF/WilsonKernelsInstantiationWilsonTwoIndexSymmetricImplF.cc

@@ -1,51 +0,0 @@
-/*************************************************************************************
-
-Grid physics library, www.github.com/paboyle/Grid
-
-Source file: ./lib/qcd/action/fermion/WilsonKernels.cc
-
-Copyright (C) 2015, 2020
-
-Author: Peter Boyle <paboyle@ph.ed.ac.uk>
-Author: Peter Boyle <peterboyle@Peters-MacBook-Pro-2.local>
-Author: paboyle <paboyle@ph.ed.ac.uk>
-Author: Nils Meyer <nils.meyer@ur.de> Regensburg University
-
-This program is free software; you can redistribute it and/or modify
-it under the terms of the GNU General Public License as published by
-the Free Software Foundation; either version 2 of the License, or
-(at your option) any later version.
-
-This program is distributed in the hope that it will be useful,
-but WITHOUT ANY WARRANTY; without even the implied warranty of
-MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-GNU General Public License for more details.
-
-You should have received a copy of the GNU General Public License along
-with this program; if not, write to the Free Software Foundation, Inc.,
-51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
-
-See the full license in the file "LICENSE" in the top level distribution
-directory
-*************************************************************************************/
-/*  END LEGAL */
-#include <Grid/qcd/action/fermion/FermionCore.h>
-#include <Grid/qcd/action/fermion/implementation/WilsonKernelsImplementation.h>
-#include <Grid/qcd/action/fermion/implementation/WilsonKernelsHandImplementation.h>
-
-#ifndef AVX512
-#ifndef QPX
-#ifndef A64FX
-#ifndef A64FXFIXEDSIZE
-#include <Grid/qcd/action/fermion/implementation/WilsonKernelsAsmImplementation.h>
-#endif
-#endif
-#endif
-#endif
-
-NAMESPACE_BEGIN(Grid);
-
-#include "impl.h"
-template class WilsonKernels<IMPLEMENTATION>;
-
-NAMESPACE_END(Grid);

Grid/qcd/action/fermion/instantiation/WilsonTwoIndexSymmetricImplF/WilsonKernelsInstantiationWilsonTwoIndexSymmetricImplF.cc

@@ -0,0 +1 @@
+../WilsonKernelsInstantiation.cc.master

Grid/qcd/action/fermion/instantiation/ZWilsonImplD/WilsonKernelsInstantiationZWilsonImplD.cc

@@ -1,51 +0,0 @@
-/*************************************************************************************
-
-Grid physics library, www.github.com/paboyle/Grid
-
-Source file: ./lib/qcd/action/fermion/WilsonKernels.cc
-
-Copyright (C) 2015, 2020
-
-Author: Peter Boyle <paboyle@ph.ed.ac.uk>
-Author: Peter Boyle <peterboyle@Peters-MacBook-Pro-2.local>
-Author: paboyle <paboyle@ph.ed.ac.uk>
-Author: Nils Meyer <nils.meyer@ur.de> Regensburg University
-
-This program is free software; you can redistribute it and/or modify
-it under the terms of the GNU General Public License as published by
-the Free Software Foundation; either version 2 of the License, or
-(at your option) any later version.
-
-This program is distributed in the hope that it will be useful,
-but WITHOUT ANY WARRANTY; without even the implied warranty of
-MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-GNU General Public License for more details.
-
-You should have received a copy of the GNU General Public License along
-with this program; if not, write to the Free Software Foundation, Inc.,
-51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
-
-See the full license in the file "LICENSE" in the top level distribution
-directory
-*************************************************************************************/
-/*  END LEGAL */
-#include <Grid/qcd/action/fermion/FermionCore.h>
-#include <Grid/qcd/action/fermion/implementation/WilsonKernelsImplementation.h>
-#include <Grid/qcd/action/fermion/implementation/WilsonKernelsHandImplementation.h>
-
-#ifndef AVX512
-#ifndef QPX
-#ifndef A64FX
-#ifndef A64FXFIXEDSIZE
-#include <Grid/qcd/action/fermion/implementation/WilsonKernelsAsmImplementation.h>
-#endif
-#endif
-#endif
-#endif
-
-NAMESPACE_BEGIN(Grid);
-
-#include "impl.h"
-template class WilsonKernels<IMPLEMENTATION>;
-
-NAMESPACE_END(Grid);

Grid/qcd/action/fermion/instantiation/ZWilsonImplD/WilsonKernelsInstantiationZWilsonImplD.cc

@@ -0,0 +1 @@
+../WilsonKernelsInstantiation.cc.master

Grid/qcd/action/fermion/instantiation/ZWilsonImplF/WilsonKernelsInstantiationZWilsonImplF.cc

@@ -1,51 +0,0 @@
-/*************************************************************************************
-
-Grid physics library, www.github.com/paboyle/Grid
-
-Source file: ./lib/qcd/action/fermion/WilsonKernels.cc
-
-Copyright (C) 2015, 2020
-
-Author: Peter Boyle <paboyle@ph.ed.ac.uk>
-Author: Peter Boyle <peterboyle@Peters-MacBook-Pro-2.local>
-Author: paboyle <paboyle@ph.ed.ac.uk>
-Author: Nils Meyer <nils.meyer@ur.de> Regensburg University
-
-This program is free software; you can redistribute it and/or modify
-it under the terms of the GNU General Public License as published by
-the Free Software Foundation; either version 2 of the License, or
-(at your option) any later version.
-
-This program is distributed in the hope that it will be useful,
-but WITHOUT ANY WARRANTY; without even the implied warranty of
-MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-GNU General Public License for more details.
-
-You should have received a copy of the GNU General Public License along
-with this program; if not, write to the Free Software Foundation, Inc.,
-51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
-
-See the full license in the file "LICENSE" in the top level distribution
-directory
-*************************************************************************************/
-/*  END LEGAL */
-#include <Grid/qcd/action/fermion/FermionCore.h>
-#include <Grid/qcd/action/fermion/implementation/WilsonKernelsImplementation.h>
-#include <Grid/qcd/action/fermion/implementation/WilsonKernelsHandImplementation.h>
-
-#ifndef AVX512
-#ifndef QPX
-#ifndef A64FX
-#ifndef A64FXFIXEDSIZE
-#include <Grid/qcd/action/fermion/implementation/WilsonKernelsAsmImplementation.h>
-#endif
-#endif
-#endif
-#endif
-
-NAMESPACE_BEGIN(Grid);
-
-#include "impl.h"
-template class WilsonKernels<IMPLEMENTATION>;
-
-NAMESPACE_END(Grid);

Grid/qcd/action/fermion/instantiation/ZWilsonImplF/WilsonKernelsInstantiationZWilsonImplF.cc

@@ -0,0 +1 @@
+../WilsonKernelsInstantiation.cc.master

Grid/qcd/action/fermion/instantiation/generate_instantiations.sh

@@ -18,6 +18,10 @@ WILSON_IMPL_LIST=" \
 	   GparityWilsonImplF \
 	   GparityWilsonImplD "
 
+COMPACT_WILSON_IMPL_LIST=" \
+	   WilsonImplF \
+	   WilsonImplD "
+
 DWF_IMPL_LIST=" \
 	   WilsonImplF \
 	   WilsonImplD \
@@ -40,13 +44,23 @@ EOF
 
 done
 
-CC_LIST="WilsonCloverFermionInstantiation CompactWilsonCloverFermionInstantiation WilsonFermionInstantiation WilsonKernelsInstantiation WilsonTMFermionInstantiation"
+CC_LIST="WilsonCloverFermionInstantiation WilsonFermionInstantiation WilsonKernelsInstantiation WilsonTMFermionInstantiation"
 
 for impl in $WILSON_IMPL_LIST
 do
 for f in $CC_LIST
 do
-  ln -f -s ../$f.cc.master $impl/$f$impl.cc 
+  ln -f -s ../$f.cc.master $impl/$f$impl.cc
+done
+done
+
+CC_LIST="CompactWilsonCloverFermionInstantiation"
+
+for impl in $COMPACT_WILSON_IMPL_LIST
+do
+for f in $CC_LIST
+do
+  ln -f -s ../$f.cc.master $impl/$f$impl.cc
 done
 done
 
@@ -63,14 +77,14 @@ for impl in $DWF_IMPL_LIST $GDWF_IMPL_LIST
 do
 for f in $CC_LIST
 do
-  ln -f -s ../$f.cc.master $impl/$f$impl.cc 
+  ln -f -s ../$f.cc.master $impl/$f$impl.cc
 done
 done
 
 # overwrite the .cc file in Gparity directories
 for impl in $GDWF_IMPL_LIST
 do
-  ln -f -s ../WilsonKernelsInstantiationGparity.cc.master $impl/WilsonKernelsInstantiation$impl.cc 
+  ln -f -s ../WilsonKernelsInstantiationGparity.cc.master $impl/WilsonKernelsInstantiation$impl.cc
 done
 
 
@@ -84,7 +98,7 @@ for impl in $STAG_IMPL_LIST
 do
 for f in $CC_LIST
 do
-  ln -f -s ../$f.cc.master $impl/$f$impl.cc 
+  ln -f -s ../$f.cc.master $impl/$f$impl.cc
 done
 done
 

Grid/qcd/action/filters/DDHMCFilter.h

@@ -0,0 +1,102 @@
+/*************************************************************************************
+
+Grid physics library, www.github.com/paboyle/Grid
+
+Source file: ./lib/qcd/hmc/integrators/DirichletFilter.h
+
+Copyright (C) 2015
+
+Author: Peter Boyle <paboyle@ph.ed.ac.uk>
+
+This program is free software; you can redistribute it and/or modify
+it under the terms of the GNU General Public License as published by
+the Free Software Foundation; either version 2 of the License, or
+(at your option) any later version.
+
+This program is distributed in the hope that it will be useful,
+but WITHOUT ANY WARRANTY; without even the implied warranty of
+MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+GNU General Public License for more details.
+
+You should have received a copy of the GNU General Public License along
+with this program; if not, write to the Free Software Foundation, Inc.,
+51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
+
+See the full license in the file "LICENSE" in the top level distribution
+directory
+*************************************************************************************/
+/*  END LEGAL */
+//--------------------------------------------------------------------
+#pragma once
+
+NAMESPACE_BEGIN(Grid);
+////////////////////////////////////////////////////
+// DDHMC filter with sub-block size B[mu]
+////////////////////////////////////////////////////
+
+template<typename GaugeField>
+struct DDHMCFilter: public MomentumFilterBase<GaugeField>
+{
+  Coordinate Block;
+  int Width;
+  
+  DDHMCFilter(const Coordinate &_Block,int _Width=2): Block(_Block) { Width=_Width; }
+
+  void applyFilter(GaugeField &U) const override
+  {
+    GridBase *grid = U.Grid();
+    Coordinate Global=grid->GlobalDimensions();
+    GaugeField zzz(grid); zzz = Zero();
+    LatticeInteger coor(grid); 
+    
+    auto zzz_mu = PeekIndex<LorentzIndex>(zzz,0);
+    ////////////////////////////////////////////////////
+    // Zero BDY layers
+    ////////////////////////////////////////////////////
+    std::cout<<GridLogMessage<<" DDHMC Force Filter Block "<<Block<<" width " <<Width<<std::endl;
+    for(int mu=0;mu<Nd;mu++) {
+
+      Integer B1 = Block[mu];
+      if ( B1 && (B1 <= Global[mu]) ) {
+	LatticeCoordinate(coor,mu);
+
+	////////////////////////////////
+	// OmegaBar - zero all links contained in slice B-1,0 and
+	// mu links connecting to Omega
+	////////////////////////////////
+	if ( Width==1) { 
+	  U    = where(mod(coor,B1)==Integer(B1-1),zzz,U);
+	  U    = where(mod(coor,B1)==Integer(0)   ,zzz,U); 
+	  auto U_mu   = PeekIndex<LorentzIndex>(U,mu);
+	  U_mu = where(mod(coor,B1)==Integer(B1-2),zzz_mu,U_mu); 
+	  PokeIndex<LorentzIndex>(U, U_mu, mu);
+	}
+	if ( Width==2) { 
+	  U    = where(mod(coor,B1)==Integer(B1-2),zzz,U);
+	  U    = where(mod(coor,B1)==Integer(B1-1),zzz,U);
+	  U    = where(mod(coor,B1)==Integer(0)   ,zzz,U); 
+	  U    = where(mod(coor,B1)==Integer(1)   ,zzz,U); 
+	  auto U_mu   = PeekIndex<LorentzIndex>(U,mu);
+	  U_mu = where(mod(coor,B1)==Integer(B1-3),zzz_mu,U_mu); 
+	  PokeIndex<LorentzIndex>(U, U_mu, mu);
+	}
+	if ( Width==3) { 
+	  U    = where(mod(coor,B1)==Integer(B1-3),zzz,U);
+	  U    = where(mod(coor,B1)==Integer(B1-2),zzz,U);
+	  U    = where(mod(coor,B1)==Integer(B1-1),zzz,U);
+	  U    = where(mod(coor,B1)==Integer(0)   ,zzz,U); 
+	  U    = where(mod(coor,B1)==Integer(1)   ,zzz,U); 
+	  U    = where(mod(coor,B1)==Integer(2)   ,zzz,U); 
+	  auto U_mu   = PeekIndex<LorentzIndex>(U,mu);
+	  U_mu = where(mod(coor,B1)==Integer(B1-4),zzz_mu,U_mu); 
+	  PokeIndex<LorentzIndex>(U, U_mu, mu);
+	}
+      }
+
+    }
+   
+  }
+};
+
+NAMESPACE_END(Grid);
+

Grid/qcd/action/filters/DirichletFilter.h

@@ -0,0 +1,71 @@
+/*************************************************************************************
+
+Grid physics library, www.github.com/paboyle/Grid
+
+Source file: ./lib/qcd/hmc/integrators/DirichletFilter.h
+
+Copyright (C) 2015
+
+Author: Peter Boyle <paboyle@ph.ed.ac.uk>
+
+This program is free software; you can redistribute it and/or modify
+it under the terms of the GNU General Public License as published by
+the Free Software Foundation; either version 2 of the License, or
+(at your option) any later version.
+
+This program is distributed in the hope that it will be useful,
+but WITHOUT ANY WARRANTY; without even the implied warranty of
+MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+GNU General Public License for more details.
+
+You should have received a copy of the GNU General Public License along
+with this program; if not, write to the Free Software Foundation, Inc.,
+51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
+
+See the full license in the file "LICENSE" in the top level distribution
+directory
+*************************************************************************************/
+/*  END LEGAL */
+//--------------------------------------------------------------------
+#pragma once
+
+NAMESPACE_BEGIN(Grid);
+
+template<typename MomentaField>
+struct DirichletFilter: public MomentumFilterBase<MomentaField>
+{
+  typedef typename MomentaField::vector_type vector_type; //SIMD-vectorized complex type
+  typedef typename MomentaField::scalar_type scalar_type; //scalar complex type
+
+  typedef iScalar<iScalar<iScalar<vector_type> > >            ScalarType; //complex phase for each site
+  
+  Coordinate Block;
+  
+  DirichletFilter(const Coordinate &_Block): Block(_Block){}
+
+  void applyFilter(MomentaField &P) const override
+  {
+    GridBase *grid = P.Grid();
+    typedef decltype(PeekIndex<LorentzIndex>(P, 0)) LatCM;
+    ////////////////////////////////////////////////////
+    // Zero strictly links crossing between domains
+    ////////////////////////////////////////////////////
+    LatticeInteger coor(grid); 
+    LatCM zz(grid); zz = Zero();
+    for(int mu=0;mu<Nd;mu++) {
+      if ( (Block[mu]) && (Block[mu] < grid->GlobalDimensions()[mu] ) ) {
+	// If costly could provide Grid earlier and precompute masks
+	std::cout << GridLogMessage << " Dirichlet in mu="<<mu<<std::endl;
+	LatticeCoordinate(coor,mu);
+	auto P_mu = PeekIndex<LorentzIndex>(P, mu);
+	P_mu = where(mod(coor,Block[mu])==Integer(Block[mu]-1),zz,P_mu);
+	PokeIndex<LorentzIndex>(P, P_mu, mu);
+      }
+    }
+  }
+};
+
+
+
+NAMESPACE_END(Grid);
+

Grid/qcd/hmc/GenericHMCrunner.h

@@ -129,18 +129,10 @@ public:
     Runner(S);
   }
 
-  //////////////////////////////////////////////////////////////////
+  //Use the checkpointer to initialize the RNGs and the gauge field, writing the resulting gauge field into U.
-
+  //This is called automatically by Run but may be useful elsewhere, e.g. for integrator tuning experiments
-private:
+  void initializeGaugeFieldAndRNGs(Field &U){
-  template <class SmearingPolicy>
+    if(!Resources.haveRNGs()) Resources.AddRNGs();
-  void Runner(SmearingPolicy &Smearing) {
-    auto UGrid = Resources.GetCartesian();
-    Resources.AddRNGs();
-    Field U(UGrid);
-
-    // Can move this outside?
-    typedef IntegratorType<SmearingPolicy> TheIntegrator;
-    TheIntegrator MDynamics(UGrid, Parameters.MD, TheAction, Smearing);
 
     if (Parameters.StartingType == "HotStart") {
       // Hot start
@@ -167,6 +159,25 @@ private:
 	<< "Valid [HotStart, ColdStart, TepidStart, CheckpointStart]\n";
       exit(1);
     }
+  }
+
+
+
+  //////////////////////////////////////////////////////////////////
+
+private:
+  template <class SmearingPolicy>
+  void Runner(SmearingPolicy &Smearing) {
+    auto UGrid = Resources.GetCartesian();
+    Field U(UGrid);
+
+    initializeGaugeFieldAndRNGs(U);
+
+    typedef IntegratorType<SmearingPolicy> TheIntegrator;
+    TheIntegrator MDynamics(UGrid, Parameters.MD, TheAction, Smearing);
+
+    // Sets the momentum filter
+    MDynamics.setMomentumFilter(*(Resources.GetMomentumFilter()));
 
     Smearing.set_Field(U);
 

Grid/qcd/hmc/HMC.h

@@ -34,6 +34,7 @@ directory
 			    * @brief Classes for Hybrid Monte Carlo update
 			    *
 			    * @author Guido Cossu
+			    * @author Peter Boyle
 			    */
 			   //--------------------------------------------------------------------
 #pragma once
@@ -115,22 +116,17 @@ private:
 
     random(sRNG, rn_test);
 
-    std::cout << GridLogMessage
+    std::cout << GridLogHMC << "--------------------------------------------------\n";
-              << "--------------------------------------------------\n";
+    std::cout << GridLogHMC << "exp(-dH) = " << prob << "  Random = " << rn_test << "\n";
-    std::cout << GridLogMessage << "exp(-dH) = " << prob
+    std::cout << GridLogHMC << "Acc. Probability = " << ((prob < 1.0) ? prob : 1.0) << "\n";
-              << "  Random = " << rn_test << "\n";
-    std::cout << GridLogMessage
-              << "Acc. Probability = " << ((prob < 1.0) ? prob : 1.0) << "\n";
 
     if ((prob > 1.0) || (rn_test <= prob)) {  // accepted
-      std::cout << GridLogMessage << "Metropolis_test -- ACCEPTED\n";
+      std::cout << GridLogHMC << "Metropolis_test -- ACCEPTED\n";
-      std::cout << GridLogMessage
+      std::cout << GridLogHMC << "--------------------------------------------------\n";
-                << "--------------------------------------------------\n";
       return true;
     } else {  // rejected
-      std::cout << GridLogMessage << "Metropolis_test -- REJECTED\n";
+      std::cout << GridLogHMC << "Metropolis_test -- REJECTED\n";
-      std::cout << GridLogMessage
+      std::cout << GridLogHMC << "--------------------------------------------------\n";
-                << "--------------------------------------------------\n";
       return false;
     }
   }
@@ -139,19 +135,68 @@ private:
   // Evolution
   /////////////////////////////////////////////////////////
   RealD evolve_hmc_step(Field &U) {
-    TheIntegrator.refresh(U, sRNG, pRNG);  // set U and initialize P and phi's
 
-    RealD H0 = TheIntegrator.S(U);  // initial state action
+    GridBase *Grid = U.Grid();
+
+    //////////////////////////////////////////////////////////////////////////////////////////////////////
+    // Mainly for DDHMC perform a random translation of U modulo volume
+    //////////////////////////////////////////////////////////////////////////////////////////////////////
+    std::cout << GridLogMessage << "--------------------------------------------------\n";
+    std::cout << GridLogMessage << "Random shifting gauge field by [";
+    for(int d=0;d<Grid->Nd();d++) {
+
+      int L = Grid->GlobalDimensions()[d];
+
+      RealD rn_uniform;  random(sRNG, rn_uniform);
+
+      int shift = (int) (rn_uniform*L);
+
+      std::cout << shift;
+      if(d<Grid->Nd()-1) std::cout <<",";
+      else               std::cout <<"]\n";
+      
+      U = Cshift(U,d,shift);
+    }
+    std::cout << GridLogMessage << "--------------------------------------------------\n";
+
+    TheIntegrator.reset_timer();
+    
+    //////////////////////////////////////////////////////////////////////////////////////////////////////
+    // set U and initialize P and phi's
+    //////////////////////////////////////////////////////////////////////////////////////////////////////
+    std::cout << GridLogMessage << "--------------------------------------------------\n";
+    std::cout << GridLogMessage << "Refresh momenta and pseudofermions";
+    TheIntegrator.refresh(U, sRNG, pRNG);  
+    std::cout << GridLogMessage << "--------------------------------------------------\n";
+
+    //////////////////////////////////////////////////////////////////////////////////////////////////////
+    // initial state action
+    //////////////////////////////////////////////////////////////////////////////////////////////////////
+    std::cout << GridLogMessage << "--------------------------------------------------\n";
+    std::cout << GridLogMessage << "Compute initial action";
+    RealD H0 = TheIntegrator.S(U);  
+    std::cout << GridLogMessage << "--------------------------------------------------\n";
 
     std::streamsize current_precision = std::cout.precision();
     std::cout.precision(15);
-    std::cout << GridLogMessage << "Total H before trajectory = " << H0 << "\n";
+    std::cout << GridLogHMC << "Total H before trajectory = " << H0 << "\n";
     std::cout.precision(current_precision);
 
+    std::cout << GridLogMessage << "--------------------------------------------------\n";
+    std::cout << GridLogMessage << " Molecular Dynamics evolution ";
     TheIntegrator.integrate(U);
+    std::cout << GridLogMessage << "--------------------------------------------------\n";
 
-    RealD H1 = TheIntegrator.S(U);  // updated state action
+    //////////////////////////////////////////////////////////////////////////////////////////////////////
+    // updated state action
+    //////////////////////////////////////////////////////////////////////////////////////////////////////
+    std::cout << GridLogMessage << "--------------------------------------------------\n";
+    std::cout << GridLogMessage << "Compute final action";
+    RealD H1 = TheIntegrator.S(U);  
+    std::cout << GridLogMessage << "--------------------------------------------------\n";
 
+
+    
     ///////////////////////////////////////////////////////////
     if(0){
       std::cout << "------------------------- Reversibility test" << std::endl;
@@ -163,17 +208,16 @@ private:
     }
     ///////////////////////////////////////////////////////////
 
-
     std::cout.precision(15);
-    std::cout << GridLogMessage << "Total H after trajectory  = " << H1
+
-	      << "  dH = " << H1 - H0 << "\n";
+    std::cout << GridLogHMC << "--------------------------------------------------\n";
+    std::cout << GridLogHMC << "Total H after trajectory  = " << H1 << "  dH = " << H1 - H0 << "\n";
+    std::cout << GridLogHMC << "--------------------------------------------------\n";
+
     std::cout.precision(current_precision);
     
     return (H1 - H0);
   }
-  
-
-  
 
 public:
   /////////////////////////////////////////
@@ -195,10 +239,13 @@ public:
 
     // Actual updates (evolve a copy Ucopy then copy back eventually)
     unsigned int FinalTrajectory = Params.Trajectories + Params.NoMetropolisUntil + Params.StartTrajectory;
+
     for (int traj = Params.StartTrajectory; traj < FinalTrajectory; ++traj) {
-      std::cout << GridLogMessage << "-- # Trajectory = " << traj << "\n";
+
+      std::cout << GridLogHMC << "-- # Trajectory = " << traj << "\n";
+
       if (traj < Params.StartTrajectory + Params.NoMetropolisUntil) {
-      	std::cout << GridLogMessage << "-- Thermalization" << std::endl;
+      	std::cout << GridLogHMC << "-- Thermalization" << std::endl;
       }
       
       double t0=usecond();
@@ -207,20 +254,19 @@ public:
       DeltaH = evolve_hmc_step(Ucopy);
       // Metropolis-Hastings test
       bool accept = true;
-      if (traj >= Params.StartTrajectory + Params.NoMetropolisUntil) {
+      if (Params.MetropolisTest && traj >= Params.StartTrajectory + Params.NoMetropolisUntil) {
         accept = metropolis_test(DeltaH);
       } else {
-      	std::cout << GridLogMessage << "Skipping Metropolis test" << std::endl;
+      	std::cout << GridLogHMC << "Skipping Metropolis test" << std::endl;
       }
 
       if (accept)
         Ucur = Ucopy; 
       
-     
-      
       double t1=usecond();
-      std::cout << GridLogMessage << "Total time for trajectory (s): " << (t1-t0)/1e6 << std::endl;
+      std::cout << GridLogHMC << "Total time for trajectory (s): " << (t1-t0)/1e6 << std::endl;
 
+      TheIntegrator.print_timer();
 
       for (int obs = 0; obs < Observables.size(); obs++) {
       	std::cout << GridLogDebug << "Observables # " << obs << std::endl;
@@ -228,7 +274,7 @@ public:
       	std::cout << GridLogDebug << "Observables pointer " << Observables[obs] << std::endl;
         Observables[obs]->TrajectoryComplete(traj + 1, Ucur, sRNG, pRNG);
       }
-      std::cout << GridLogMessage << ":::::::::::::::::::::::::::::::::::::::::::" << std::endl;
+      std::cout << GridLogHMC << ":::::::::::::::::::::::::::::::::::::::::::" << std::endl;
     }
   }
 

Grid/qcd/hmc/HMCResourceManager.h

@@ -72,6 +72,8 @@ class HMCResourceManager {
   typedef HMCModuleBase< BaseHmcCheckpointer<ImplementationPolicy> > CheckpointerBaseModule;
   typedef HMCModuleBase< HmcObservable<typename ImplementationPolicy::Field> > ObservableBaseModule;
   typedef ActionModuleBase< Action<typename ImplementationPolicy::Field>, GridModule > ActionBaseModule;
+  typedef typename ImplementationPolicy::Field MomentaField;
+  typedef typename ImplementationPolicy::Field Field;  
 
   // Named storage for grid pairs (std + red-black)
   std::unordered_map<std::string, GridModule> Grids;
@@ -80,6 +82,9 @@ class HMCResourceManager {
   // SmearingModule<ImplementationPolicy> Smearing;
   std::unique_ptr<CheckpointerBaseModule> CP;
 
+  // Momentum filter
+  std::unique_ptr<MomentumFilterBase<typename ImplementationPolicy::Field> > Filter;
+  
   // A vector of HmcObservable modules
   std::vector<std::unique_ptr<ObservableBaseModule> > ObservablesList;
 
@@ -90,6 +95,7 @@ class HMCResourceManager {
 
   bool have_RNG;
   bool have_CheckPointer;
+  bool have_Filter;
 
   // NOTE: operator << is not overloaded for std::vector<string> 
   // so this function is necessary
@@ -101,7 +107,7 @@ class HMCResourceManager {
 
 
 public:
-  HMCResourceManager() : have_RNG(false), have_CheckPointer(false) {}
+  HMCResourceManager() : have_RNG(false), have_CheckPointer(false), have_Filter(false) {}
 
   template <class ReaderClass, class vector_type = vComplex >
   void initialize(ReaderClass &Read){
@@ -129,6 +135,7 @@ public:
     RNGModuleParameters RNGpar(Read);
     SetRNGSeeds(RNGpar);
 
+  
     // Observables
     auto &ObsFactory = HMC_ObservablesModuleFactory<observable_string, typename ImplementationPolicy::Field, ReaderClass>::getInstance(); 
     Read.push(observable_string);// here must check if existing...
@@ -208,6 +215,16 @@ public:
     AddGrid(s, Mod);
   }
 
+  void SetMomentumFilter( MomentumFilterBase<typename ImplementationPolicy::Field> * MomFilter) {
+    assert(have_Filter==false);
+    Filter = std::unique_ptr<MomentumFilterBase<typename ImplementationPolicy::Field> >(MomFilter);
+    have_Filter = true;
+  }
+  MomentumFilterBase<typename ImplementationPolicy::Field> *GetMomentumFilter(void) {
+    if ( !have_Filter)
+      SetMomentumFilter(new MomentumFilterNone<typename ImplementationPolicy::Field>());
+    return Filter.get();
+  }
 
   GridCartesian* GetCartesian(std::string s = "") {
     if (s.empty()) s = Grids.begin()->first;
@@ -226,6 +243,9 @@ public:
   //////////////////////////////////////////////////////
   // Random number generators
   //////////////////////////////////////////////////////
+  
+  //Return true if the RNG objects have been instantiated
+  bool haveRNGs() const{ return have_RNG; }
 
   void AddRNGs(std::string s = "") {
     // Couple the RNGs to the GridModule tagged by s

Grid/qcd/hmc/integrators/Integrator.h

@@ -33,7 +33,6 @@ directory
 #define INTEGRATOR_INCLUDED
 
 #include <memory>
-#include "MomentumFilter.h"
 
 NAMESPACE_BEGIN(Grid);
 
@@ -67,6 +66,7 @@ public:
 template <class FieldImplementation, class SmearingPolicy, class RepresentationPolicy>
 class Integrator {
 protected:
+
   typedef typename FieldImplementation::Field MomentaField;  //for readability
   typedef typename FieldImplementation::Field Field;
 
@@ -119,36 +119,58 @@ protected:
     }
   } update_P_hireps{};
 
+ 
   void update_P(MomentaField& Mom, Field& U, int level, double ep) {
     // input U actually not used in the fundamental case
     // Fundamental updates, include smearing
 
     for (int a = 0; a < as[level].actions.size(); ++a) {
+
       double start_full = usecond();
       Field force(U.Grid());
       conformable(U.Grid(), Mom.Grid());
 
       Field& Us = Smearer.get_U(as[level].actions.at(a)->is_smeared);
       double start_force = usecond();
+      as[level].actions.at(a)->deriv_timer_start();
       as[level].actions.at(a)->deriv(Us, force);  // deriv should NOT include Ta
+      as[level].actions.at(a)->deriv_timer_stop();
 
       std::cout << GridLogIntegrator << "Smearing (on/off): " << as[level].actions.at(a)->is_smeared << std::endl;
+      auto name = as[level].actions.at(a)->action_name();
       if (as[level].actions.at(a)->is_smeared) Smearer.smeared_force(force);
+
       force = FieldImplementation::projectForce(force); // Ta for gauge fields
       double end_force = usecond();
-      Real force_abs = std::sqrt(norm2(force)/U.Grid()->gSites());
+
-      std::cout << GridLogIntegrator << "["<<level<<"]["<<a<<"] Force average: " << force_abs << std::endl;
+      MomFilter->applyFilter(force);
+      std::cout << GridLogIntegrator << " update_P : Level [" << level <<"]["<<a <<"] "<<name<< std::endl;
+      DumpSliceNorm("force ",force,Nd-1);
+      
+      Real force_abs   = std::sqrt(norm2(force)/U.Grid()->gSites()); //average per-site norm.  nb. norm2(latt) = \sum_x norm2(latt[x]) 
+      Real impulse_abs = force_abs * ep * HMC_MOMENTUM_DENOMINATOR;    
+
+      Real force_max   = std::sqrt(maxLocalNorm2(force));
+      Real impulse_max = force_max * ep * HMC_MOMENTUM_DENOMINATOR;    
+
+      as[level].actions.at(a)->deriv_log(force_abs,force_max);
+      
+      std::cout << GridLogIntegrator<< "["<<level<<"]["<<a<<"] Force average: " << force_abs <<" "<<name<<std::endl;
+      std::cout << GridLogIntegrator<< "["<<level<<"]["<<a<<"] Force max    : " << force_max <<" "<<name<<std::endl;
+      std::cout << GridLogIntegrator<< "["<<level<<"]["<<a<<"] Fdt average  : " << impulse_abs <<" "<<name<<std::endl;
+      std::cout << GridLogIntegrator<< "["<<level<<"]["<<a<<"] Fdt max      : " << impulse_max <<" "<<name<<std::endl;
+
       Mom -= force * ep* HMC_MOMENTUM_DENOMINATOR;; 
       double end_full = usecond();
       double time_full  = (end_full - start_full) / 1e3;
       double time_force = (end_force - start_force) / 1e3;
       std::cout << GridLogMessage << "["<<level<<"]["<<a<<"] P update elapsed time: " << time_full << " ms (force: " << time_force << " ms)"  << std::endl;
+
     }
 
     // Force from the other representations
     as[level].apply(update_P_hireps, Representations, Mom, U, ep);
 
-    MomFilter->applyFilter(Mom);
   }
 
   void update_U(Field& U, double ep) 
@@ -162,8 +184,12 @@ protected:
   
   void update_U(MomentaField& Mom, Field& U, double ep) 
   {
+    MomentaField MomFiltered(Mom.Grid());
+    MomFiltered = Mom;
+    MomFilter->applyFilter(MomFiltered);
+
     // exponential of Mom*U in the gauge fields case
-    FieldImplementation::update_field(Mom, U, ep);
+    FieldImplementation::update_field(MomFiltered, U, ep);
 
     // Update the smeared fields, can be implemented as observer
     Smearer.set_Field(U);
@@ -206,6 +232,66 @@ public:
   const MomentaField & getMomentum() const{ return P; }
   
 
+  void reset_timer(void)
+  {
+    for (int level = 0; level < as.size(); ++level) {
+      for (int actionID = 0; actionID < as[level].actions.size(); ++actionID) {
+        as[level].actions.at(actionID)->reset_timer();
+      }
+    }
+  }
+  void print_timer(void)
+  {
+    std::cout << GridLogMessage << ":::::::::::::::::::::::::::::::::::::::::" << std::endl;
+    std::cout << GridLogMessage << " Refresh cumulative timings "<<std::endl;
+    std::cout << GridLogMessage << "--------------------------- "<<std::endl;
+    for (int level = 0; level < as.size(); ++level) {
+      for (int actionID = 0; actionID < as[level].actions.size(); ++actionID) {
+	std::cout << GridLogMessage 
+		  << as[level].actions.at(actionID)->action_name()
+		  <<"["<<level<<"]["<< actionID<<"] "
+		  << as[level].actions.at(actionID)->refresh_us*1.0e-6<<" s"<< std::endl;
+      }
+    }
+    std::cout << GridLogMessage << "--------------------------- "<<std::endl;
+    std::cout << GridLogMessage << " Action cumulative timings "<<std::endl;
+    std::cout << GridLogMessage << "--------------------------- "<<std::endl;
+    for (int level = 0; level < as.size(); ++level) {
+      for (int actionID = 0; actionID < as[level].actions.size(); ++actionID) {
+	std::cout << GridLogMessage 
+		  << as[level].actions.at(actionID)->action_name()
+		  <<"["<<level<<"]["<< actionID<<"] "
+		  << as[level].actions.at(actionID)->S_us*1.0e-6<<" s"<< std::endl;
+      }
+    }
+    std::cout << GridLogMessage << "--------------------------- "<<std::endl;
+    std::cout << GridLogMessage << " Force cumulative timings "<<std::endl;
+    std::cout << GridLogMessage << "------------------------- "<<std::endl;
+    for (int level = 0; level < as.size(); ++level) {
+      for (int actionID = 0; actionID < as[level].actions.size(); ++actionID) {
+	std::cout << GridLogMessage 
+		  << as[level].actions.at(actionID)->action_name()
+		  <<"["<<level<<"]["<< actionID<<"] "
+		  << as[level].actions.at(actionID)->deriv_us*1.0e-6<<" s"<< std::endl;
+      }
+    }
+    std::cout << GridLogMessage << "--------------------------- "<<std::endl;
+    std::cout << GridLogMessage << " Force average size "<<std::endl;
+    std::cout << GridLogMessage << "------------------------- "<<std::endl;
+    for (int level = 0; level < as.size(); ++level) {
+      for (int actionID = 0; actionID < as[level].actions.size(); ++actionID) {
+	std::cout << GridLogMessage 
+		  << as[level].actions.at(actionID)->action_name()
+		  <<"["<<level<<"]["<< actionID<<"] : "
+		  <<" force max " << as[level].actions.at(actionID)->deriv_max_average()
+		  <<" norm "      << as[level].actions.at(actionID)->deriv_norm_average()
+		  <<" calls "     << as[level].actions.at(actionID)->deriv_num
+		  << std::endl;
+      }
+    }
+    std::cout << GridLogMessage << ":::::::::::::::::::::::::::::::::::::::::"<< std::endl;
+  }
+  
   void print_parameters()
   {
     std::cout << GridLogMessage << "[Integrator] Name : "<< integrator_name() << std::endl;
@@ -224,7 +310,6 @@ public:
       }
     }
     std::cout << GridLogMessage << ":::::::::::::::::::::::::::::::::::::::::"<< std::endl;
-
   }
 
   void reverse_momenta()
@@ -267,15 +352,19 @@ public:
       for (int actionID = 0; actionID < as[level].actions.size(); ++actionID) {
         // get gauge field from the SmearingPolicy and
         // based on the boolean is_smeared in actionID
+	auto name = as[level].actions.at(actionID)->action_name();
+        std::cout << GridLogMessage << "refresh [" << level << "][" << actionID << "] "<<name << std::endl;
+
         Field& Us = Smearer.get_U(as[level].actions.at(actionID)->is_smeared);
+	as[level].actions.at(actionID)->refresh_timer_start();
         as[level].actions.at(actionID)->refresh(Us, sRNG, pRNG);
+	as[level].actions.at(actionID)->refresh_timer_stop();
       }
 
       // Refresh the higher representation actions
       as[level].apply(refresh_hireps, Representations, sRNG, pRNG);
     }
 
-    MomFilter->applyFilter(P);
   }
 
   // to be used by the actionlevel class to iterate
@@ -310,7 +399,9 @@ public:
         // based on the boolean is_smeared in actionID
         Field& Us = Smearer.get_U(as[level].actions.at(actionID)->is_smeared);
         std::cout << GridLogMessage << "S [" << level << "][" << actionID << "] action eval " << std::endl;
+	        as[level].actions.at(actionID)->S_timer_start();
         Hterm = as[level].actions.at(actionID)->S(Us);
+   	        as[level].actions.at(actionID)->S_timer_stop();
         std::cout << GridLogMessage << "S [" << level << "][" << actionID << "] H = " << Hterm << std::endl;
         H += Hterm;
       }

Grid/qcd/utils/GaugeFix.h

@@ -55,12 +55,12 @@ public:
     }
   }  
 
-  static void SteepestDescentGaugeFix(GaugeLorentz &Umu,Real & alpha,int maxiter,Real Omega_tol, Real Phi_tol,bool Fourier=false,int orthog=-1) {
+  static void SteepestDescentGaugeFix(GaugeLorentz &Umu,Real & alpha,int maxiter,Real Omega_tol, Real Phi_tol,bool Fourier=false,int orthog=-1,bool err_on_no_converge=true) {
     GridBase *grid = Umu.Grid();
     GaugeMat xform(grid);
-    SteepestDescentGaugeFix(Umu,xform,alpha,maxiter,Omega_tol,Phi_tol,Fourier,orthog);
+    SteepestDescentGaugeFix(Umu,xform,alpha,maxiter,Omega_tol,Phi_tol,Fourier,orthog,err_on_no_converge);
   }
-  static void SteepestDescentGaugeFix(GaugeLorentz &Umu,GaugeMat &xform,Real & alpha,int maxiter,Real Omega_tol, Real Phi_tol,bool Fourier=false,int orthog=-1) {
+  static void SteepestDescentGaugeFix(GaugeLorentz &Umu,GaugeMat &xform,Real & alpha,int maxiter,Real Omega_tol, Real Phi_tol,bool Fourier=false,int orthog=-1,bool err_on_no_converge=true) {
 
     GridBase *grid = Umu.Grid();
 
@@ -122,6 +122,8 @@ public:
 
       }
     }
+    std::cout << GridLogError << "Gauge fixing did not converge in " << maxiter << " iterations." << std::endl;
+    if (err_on_no_converge) assert(0);
   };
   static Real SteepestDescentStep(std::vector<GaugeMat> &U,GaugeMat &xform,Real & alpha, GaugeMat & dmuAmu,int orthog) {
     GridBase *grid = U[0].Grid();

Grid/qcd/utils/WilsonLoops.h

@@ -125,7 +125,6 @@ public:
     return sumplaq / vol / faces / Nc; // Nd , Nc dependent... FIXME
   }
 
-
   //////////////////////////////////////////////////
   // average over all x,y,z the temporal loop
   //////////////////////////////////////////////////
@@ -165,7 +164,7 @@ public:
 
     double vol = Umu.Grid()->gSites();
 
-    return p.real() / vol / 4.0 / 3.0;
+    return p.real() / vol / (4.0 * Nc ) ;
   };
 
   //////////////////////////////////////////////////

Grid/stencil/SimpleCompressor.h

@@ -52,6 +52,11 @@ public:
     return arg;
   }
 };
+class SimpleStencilParams{
+public:
+  Coordinate dirichlet;
+  SimpleStencilParams() {};
+};
 
 NAMESPACE_END(Grid);
 

Grid/stencil/Stencil.h

@@ -133,6 +133,8 @@ class CartesianStencilAccelerator {
   int           _osites;
   StencilVector _directions;
   StencilVector _distances;
+  StencilVector _comms_send;
+  StencilVector _comms_recv;
   StencilVector _comm_buf_size;
   StencilVector _permute_type;
   StencilVector same_node;
@@ -226,6 +228,8 @@ public:
     void * recv_buf;
     Integer to_rank;
     Integer from_rank;
+    Integer do_send;
+    Integer do_recv;
     Integer bytes;
   };
   struct Merge {
@@ -240,7 +244,20 @@ public:
     cobj * mpi_p;
     Integer buffer_size;
   };
-
+  struct CopyReceiveBuffer {
+    void * from_p;
+    void * to_p;
+    Integer bytes;
+  };
+  struct CachedTransfer {
+    Integer direction;
+    Integer OrthogPlane;
+    Integer DestProc;
+    Integer bytes;
+    Integer lane;
+    Integer cb;
+    void *recv_buf;
+  };
 
 protected:
   GridBase *                        _grid;
@@ -271,7 +288,8 @@ public:
   std::vector<Merge> MergersSHM;
   std::vector<Decompress> Decompressions;
   std::vector<Decompress> DecompressionsSHM;
-
+  std::vector<CopyReceiveBuffer> CopyReceiveBuffers ;
+  std::vector<CachedTransfer> CachedTransfers;
   ///////////////////////////////////////////////////////////
   // Unified Comms buffers for all directions
   ///////////////////////////////////////////////////////////
@@ -284,29 +302,6 @@ public:
   int u_comm_offset;
   int _unified_buffer_size;
 
-  /////////////////////////////////////////
-  // Timing info; ugly; possibly temporary
-  /////////////////////////////////////////
-  double commtime;
-  double mpi3synctime;
-  double mpi3synctime_g;
-  double shmmergetime;
-  double gathertime;
-  double gathermtime;
-  double halogtime;
-  double mergetime;
-  double decompresstime;
-  double comms_bytes;
-  double shm_bytes;
-  double splicetime;
-  double nosplicetime;
-  double calls;
-  std::vector<double> comm_bytes_thr;
-  std::vector<double> shm_bytes_thr;
-  std::vector<double> comm_time_thr;
-  std::vector<double> comm_enter_thr;
-  std::vector<double> comm_leave_thr;
-
   ////////////////////////////////////////
   // Stencil query
   ////////////////////////////////////////
@@ -333,11 +328,12 @@ public:
   //////////////////////////////////////////
   // Comms packet queue for asynch thread
   // Use OpenMP Tasks for cleaner ???
+  // must be called *inside* parallel region
   //////////////////////////////////////////
+  /*
   void CommunicateThreaded()
   {
 #ifdef GRID_OMP
-    // must be called in parallel region
     int mythread = omp_get_thread_num();
     int nthreads = CartesianCommunicator::nCommThreads;
 #else
@@ -346,65 +342,29 @@ public:
 #endif
     if (nthreads == -1) nthreads = 1;
     if (mythread < nthreads) {
-      comm_enter_thr[mythread] = usecond();
       for (int i = mythread; i < Packets.size(); i += nthreads) {
 	uint64_t bytes = _grid->StencilSendToRecvFrom(Packets[i].send_buf,
 						      Packets[i].to_rank,
 						      Packets[i].recv_buf,
 						      Packets[i].from_rank,
 						      Packets[i].bytes,i);
-	comm_bytes_thr[mythread] += bytes;
-	shm_bytes_thr[mythread] += 2*Packets[i].bytes-bytes; // Send + Recv.
-
       }
-      comm_leave_thr[mythread]= usecond();
-      comm_time_thr[mythread] += comm_leave_thr[mythread] - comm_enter_thr[mythread];
     }
   }
-
+  */
-  void CollateThreads(void)
-  {
-    int nthreads = CartesianCommunicator::nCommThreads;
-    double first=0.0;
-    double last =0.0;
-
-    for(int t=0;t<nthreads;t++) {
-
-      double t0 = comm_enter_thr[t];
-      double t1 = comm_leave_thr[t];
-      comms_bytes+=comm_bytes_thr[t];
-      shm_bytes  +=shm_bytes_thr[t];
-
-      comm_enter_thr[t] = 0.0;
-      comm_leave_thr[t] = 0.0;
-      comm_time_thr[t]   = 0.0;
-      comm_bytes_thr[t]=0;
-      shm_bytes_thr[t]=0;
-
-      if ( first == 0.0 ) first = t0;                   // first is t0
-      if ( (t0 > 0.0) && ( t0 < first ) ) first = t0;   // min time seen
-
-      if ( t1 > last ) last = t1;                       // max time seen
-
-    }
-    commtime+= last-first;
-  }
   ////////////////////////////////////////////////////////////////////////
   // Non blocking send and receive. Necessarily parallel.
   ////////////////////////////////////////////////////////////////////////
   void CommunicateBegin(std::vector<std::vector<CommsRequest_t> > &reqs)
   {
     reqs.resize(Packets.size());
-    commtime-=usecond();
     for(int i=0;i<Packets.size();i++){
-      uint64_t bytes=_grid->StencilSendToRecvFromBegin(reqs[i],
+      _grid->StencilSendToRecvFromBegin(reqs[i],
-						     Packets[i].send_buf,
+					Packets[i].send_buf,
-						     Packets[i].to_rank,
+					Packets[i].to_rank,Packets[i].do_send,
-						     Packets[i].recv_buf,
+					Packets[i].recv_buf,
-						     Packets[i].from_rank,
+					Packets[i].from_rank,Packets[i].do_recv,
-						     Packets[i].bytes,i);
+					Packets[i].bytes,i);
-      comms_bytes+=bytes;
-      shm_bytes  +=2*Packets[i].bytes-bytes;
     }
   }
 
@@ -413,7 +373,6 @@ public:
     for(int i=0;i<Packets.size();i++){
       _grid->StencilSendToRecvFromComplete(reqs[i],i);
     }
-    commtime+=usecond();
   }
   ////////////////////////////////////////////////////////////////////////
   // Blocking send and receive. Either sequential or parallel.
@@ -421,28 +380,27 @@ public:
   void Communicate(void)
   {
     if ( CartesianCommunicator::CommunicatorPolicy == CartesianCommunicator::CommunicatorPolicySequential ){
-      thread_region {
+      /////////////////////////////////////////////////////////
-	// must be called in parallel region
+      // several way threaded on different communicators.
-	int mythread  = thread_num();
+      // Cannot combine with Dirichlet operators
-	int maxthreads= thread_max();
+      // This scheme is needed on Intel Omnipath for best performance
-	int nthreads = CartesianCommunicator::nCommThreads;
+      // Deprecate once there are very few omnipath clusters
-	assert(nthreads <= maxthreads);
+      /////////////////////////////////////////////////////////
-	if (nthreads == -1) nthreads = 1;
+      int nthreads = CartesianCommunicator::nCommThreads;
-	if (mythread < nthreads) {
+      int old = GridThread::GetThreads();
-	  for (int i = mythread; i < Packets.size(); i += nthreads) {
+      GridThread::SetThreads(nthreads);
-	    double start = usecond();
+      thread_for(i,Packets.size(),{
-	    uint64_t bytes= _grid->StencilSendToRecvFrom(Packets[i].send_buf,
+	  _grid->StencilSendToRecvFrom(Packets[i].send_buf,
-							 Packets[i].to_rank,
+				       Packets[i].to_rank,Packets[i].do_send,
-							 Packets[i].recv_buf,
+				       Packets[i].recv_buf,
-							 Packets[i].from_rank,
+				       Packets[i].from_rank,Packets[i].do_recv,
-							 Packets[i].bytes,i);
+				       Packets[i].bytes,i);
-	    comm_bytes_thr[mythread] += bytes;
+      });
-	    shm_bytes_thr[mythread]  += Packets[i].bytes - bytes;
+      GridThread::SetThreads(old);
-	    comm_time_thr[mythread]  += usecond() - start;
+    } else { 
-	  }
+      /////////////////////////////////////////////////////////
-	}
+      // Concurrent and non-threaded asynch calls to MPI
-      }
+      /////////////////////////////////////////////////////////
-    } else { // Concurrent and non-threaded asynch calls to MPI
       std::vector<std::vector<CommsRequest_t> > reqs;
       this->CommunicateBegin(reqs);
       this->CommunicateComplete(reqs);
@@ -484,31 +442,23 @@ public:
       sshift[1] = _grid->CheckerBoardShiftForCB(this->_checkerboard,dimension,shift,Odd);
       if ( sshift[0] == sshift[1] ) {
 	if (splice_dim) {
-	  splicetime-=usecond();
+	  auto tmp  = GatherSimd(source,dimension,shift,0x3,compress,face_idx,point);
-	  auto tmp  = GatherSimd(source,dimension,shift,0x3,compress,face_idx);
 	  is_same_node = is_same_node && tmp;
-	  splicetime+=usecond();
 	} else {
-	  nosplicetime-=usecond();
+	  auto tmp  = Gather(source,dimension,shift,0x3,compress,face_idx,point);
-	  auto tmp  = Gather(source,dimension,shift,0x3,compress,face_idx);
 	  is_same_node = is_same_node && tmp;
-	  nosplicetime+=usecond();
 	}
       } else {
 	if(splice_dim){
-	  splicetime-=usecond();
 	  // if checkerboard is unfavourable take two passes
 	  // both with block stride loop iteration
-	  auto tmp1 =  GatherSimd(source,dimension,shift,0x1,compress,face_idx);
+	  auto tmp1 =  GatherSimd(source,dimension,shift,0x1,compress,face_idx,point);
-	  auto tmp2 =  GatherSimd(source,dimension,shift,0x2,compress,face_idx);
+	  auto tmp2 =  GatherSimd(source,dimension,shift,0x2,compress,face_idx,point);
 	  is_same_node = is_same_node && tmp1 && tmp2;
-	  splicetime+=usecond();
 	} else {
-	  nosplicetime-=usecond();
+	  auto tmp1 = Gather(source,dimension,shift,0x1,compress,face_idx,point);
-	  auto tmp1 = Gather(source,dimension,shift,0x1,compress,face_idx);
+	  auto tmp2 = Gather(source,dimension,shift,0x2,compress,face_idx,point);
-	  auto tmp2 = Gather(source,dimension,shift,0x2,compress,face_idx);
 	  is_same_node = is_same_node && tmp1 && tmp2;
-	  nosplicetime+=usecond();
 	}
       }
     }
@@ -518,13 +468,10 @@ public:
   template<class compressor>
   void HaloGather(const Lattice<vobj> &source,compressor &compress)
   {
-    mpi3synctime_g-=usecond();
     _grid->StencilBarrier();// Synch shared memory on a single nodes
-    mpi3synctime_g+=usecond();
 
     // conformable(source.Grid(),_grid);
     assert(source.Grid()==_grid);
-    halogtime-=usecond();
 
     u_comm_offset=0;
 
@@ -538,7 +485,6 @@ public:
     assert(u_comm_offset==_unified_buffer_size);
 
     accelerator_barrier();
-    halogtime+=usecond();
   }
 
   /////////////////////////
@@ -551,14 +497,70 @@ public:
     Mergers.resize(0);
     MergersSHM.resize(0);
     Packets.resize(0);
-    calls++;
+    CopyReceiveBuffers.resize(0);
+    CachedTransfers.resize(0);
   }
-  void AddPacket(void *xmit,void * rcv, Integer to,Integer from,Integer bytes){
+  void AddCopy(void *from,void * to, Integer bytes)
+  {
+    CopyReceiveBuffer obj;
+    obj.from_p = from;
+    obj.to_p = to;
+    obj.bytes= bytes;
+    CopyReceiveBuffers.push_back(obj);
+  }
+  void CommsCopy()
+  {
+    //    These are device resident MPI buffers.
+    for(int i=0;i<CopyReceiveBuffers.size();i++){
+      cobj *from=(cobj *)CopyReceiveBuffers[i].from_p;
+      cobj *to  =(cobj *)CopyReceiveBuffers[i].to_p;
+      Integer words = CopyReceiveBuffers[i].bytes/sizeof(cobj);
+
+      accelerator_forNB(j, words, cobj::Nsimd(), {
+	  coalescedWrite(to[j] ,coalescedRead(from [j]));
+      });
+    }
+  }
+  
+  Integer CheckForDuplicate(Integer direction, Integer OrthogPlane, Integer DestProc, void *recv_buf,Integer lane,Integer bytes,Integer cb)
+  {
+    CachedTransfer obj;
+    obj.direction   = direction;
+    obj.OrthogPlane = OrthogPlane;
+    obj.DestProc    = DestProc;
+    obj.recv_buf    = recv_buf;
+    obj.lane        = lane;
+    obj.bytes       = bytes;
+    obj.cb          = cb;
+
+    for(int i=0;i<CachedTransfers.size();i++){
+      if (   (CachedTransfers[i].direction  ==direction)
+	   &&(CachedTransfers[i].OrthogPlane==OrthogPlane)
+	   &&(CachedTransfers[i].DestProc   ==DestProc)
+	   &&(CachedTransfers[i].bytes      ==bytes)
+	   &&(CachedTransfers[i].lane       ==lane)
+	   &&(CachedTransfers[i].cb         ==cb)
+	     ){
+
+	AddCopy(CachedTransfers[i].recv_buf,recv_buf,bytes);
+	return 1;
+      }
+    }
+
+    CachedTransfers.push_back(obj);
+    return 0;
+  }
+  void AddPacket(void *xmit,void * rcv,
+		 Integer to, Integer do_send,
+		 Integer from, Integer do_recv,
+		 Integer bytes){
     Packet p;
     p.send_buf = xmit;
     p.recv_buf = rcv;
     p.to_rank  = to;
     p.from_rank= from;
+    p.do_send  = do_send;
+    p.do_recv  = do_recv;
     p.bytes    = bytes;
     Packets.push_back(p);
   }
@@ -578,22 +580,17 @@ public:
     mv.push_back(m);
   }
   template<class decompressor>  void CommsMerge(decompressor decompress)    {
+    CommsCopy();
     CommsMerge(decompress,Mergers,Decompressions);
   }
   template<class decompressor>  void CommsMergeSHM(decompressor decompress) {
-    mpi3synctime-=usecond();
     _grid->StencilBarrier();// Synch shared memory on a single nodes
-    mpi3synctime+=usecond();
-    shmmergetime-=usecond();
     CommsMerge(decompress,MergersSHM,DecompressionsSHM);
-    shmmergetime+=usecond();
   }
 
   template<class decompressor>
-  void CommsMerge(decompressor decompress,std::vector<Merge> &mm,std::vector<Decompress> &dd) {
+  void CommsMerge(decompressor decompress,std::vector<Merge> &mm,std::vector<Decompress> &dd)
-
+  {
-    
-    mergetime-=usecond();
     for(int i=0;i<mm.size();i++){
       auto mp = &mm[i].mpointer[0];
       auto vp0= &mm[i].vpointers[0][0];
@@ -603,9 +600,7 @@ public:
 	  decompress.Exchange(mp,vp0,vp1,type,o);
       });
     }
-    mergetime+=usecond();
 
-    decompresstime-=usecond();
     for(int i=0;i<dd.size();i++){
       auto kp = dd[i].kernel_p;
       auto mp = dd[i].mpi_p;
@@ -613,7 +608,6 @@ public:
 	decompress.Decompress(kp,mp,o);
       });
     }
-    decompresstime+=usecond();
   }
   ////////////////////////////////////////
   // Set up routines
@@ -650,18 +644,54 @@ public:
       }
     }
   }
-
+  /// Introduce a block structure and switch off comms on boundaries
+  void DirichletBlock(const Coordinate &dirichlet_block)
+  {
+    for(int ii=0;ii<this->_npoints;ii++){
+      int dimension    = this->_directions[ii];
+      int displacement = this->_distances[ii];
+      int gd = _grid->_gdimensions[dimension];
+      int fd = _grid->_fdimensions[dimension];
+      int pd = _grid->_processors [dimension];
+      int pc = _grid->_processor_coor[dimension];
+      int ld = fd/pd;
+      ///////////////////////////////////////////
+      // Figure out dirichlet send and receive
+      // on this leg of stencil.
+      ///////////////////////////////////////////
+      int comm_dim        = _grid->_processors[dimension] >1 ;
+      int block = dirichlet_block[dimension];
+      this->_comms_send[ii] = comm_dim;
+      this->_comms_recv[ii] = comm_dim;
+      if ( block && comm_dim ) {
+	assert(abs(displacement) < ld );
+      
+	if( displacement > 0 ) {
+	  // High side, low side
+	  // | <--B--->|
+	  // |    |    |
+	  //           noR
+	  // noS
+	  if ( ( (ld*(pc+1) ) % block ) == 0 ) this->_comms_recv[ii] = 0;
+	  if ( ( (ld*pc     ) % block ) == 0 ) this->_comms_send[ii] = 0;
+	} else {
+	  // High side, low side
+	  // | <--B--->|
+	  // |    |    |
+	  //           noS
+	  // noR
+	  if ( ( (ld*(pc+1) ) % block ) == 0 ) this->_comms_send[ii] = 0;
+	  if ( ( (ld*pc     ) % block ) == 0 ) this->_comms_recv[ii] = 0;
+	}
+      }
+    }
+  }
   CartesianStencil(GridBase *grid,
 		   int npoints,
 		   int checkerboard,
 		   const std::vector<int> &directions,
 		   const std::vector<int> &distances,
 		   Parameters p)
-    : shm_bytes_thr(npoints),
-      comm_bytes_thr(npoints),
-      comm_enter_thr(npoints),
-      comm_leave_thr(npoints),
-      comm_time_thr(npoints)
   {
     face_table_computed=0;
     _grid    = grid;
@@ -675,8 +705,12 @@ public:
     this->_simd_layout = _grid->_simd_layout; // copy simd_layout to give access to Accelerator Kernels
     this->_directions = StencilVector(directions);
     this->_distances  = StencilVector(distances);
+    this->_comms_send.resize(npoints); 
+    this->_comms_recv.resize(npoints); 
     this->same_node.resize(npoints);
 
+    if ( p.dirichlet.size() ) DirichletBlock(p.dirichlet); // comms send/recv set up
+
     _unified_buffer_size=0;
     surface_list.resize(0);
 
@@ -693,15 +727,16 @@ public:
       int displacement = distances[i];
       int shift = displacement;
 
+      int gd = _grid->_gdimensions[dimension];
       int fd = _grid->_fdimensions[dimension];
+      int pd = _grid->_processors [dimension];
+      int ld = gd/pd;
       int rd = _grid->_rdimensions[dimension];
+      int pc = _grid->_processor_coor[dimension];
       this->_permute_type[point]=_grid->PermuteType(dimension);
 
       this->_checkerboard = checkerboard;
 
-      //////////////////////////
-      // the permute type
-      //////////////////////////
       int simd_layout     = _grid->_simd_layout[dimension];
       int comm_dim        = _grid->_processors[dimension] >1 ;
       int splice_dim      = _grid->_simd_layout[dimension]>1 && (comm_dim);
@@ -710,7 +745,6 @@ public:
       assert ( (rotate_dim && comm_dim) == false) ; // Do not think spread out is supported
 
       int sshift[2];
-
       //////////////////////////
       // Underlying approach. For each local site build
       // up a table containing the npoint "neighbours" and whether they
@@ -811,6 +845,7 @@ public:
     GridBase *grid=_grid;
     const int Nsimd = grid->Nsimd();
 
+    int comms_recv      = this->_comms_recv[point];
     int fd              = _grid->_fdimensions[dimension];
     int ld              = _grid->_ldimensions[dimension];
     int rd              = _grid->_rdimensions[dimension];
@@ -867,25 +902,32 @@ public:
       if ( (shiftpm== 1) && (sx<x) && (grid->_processor_coor[dimension]==grid->_processors[dimension]-1) ) {
 	wraparound = 1;
       }
-      if (!offnode) {
+
+      // Wrap locally dirichlet support case OR node local
+      if ( offnode==0 ) {
 
 	int permute_slice=0;
 	CopyPlane(point,dimension,x,sx,cbmask,permute_slice,wraparound);
-
+	
       } else {
 
+	if ( comms_recv==0 ) {
+
+	  int permute_slice=1;
+	  CopyPlane(point,dimension,x,sx,cbmask,permute_slice,wraparound);
+
+	} else { 
+
+	  ScatterPlane(point,dimension,x,cbmask,_unified_buffer_size,wraparound); // permute/extract/merge is done in comms phase
+
+	}
+
+      }
+      
+      if ( offnode ) {
 	int words = buffer_size;
 	if (cbmask != 0x3) words=words>>1;
-
-	//	int rank           = grid->_processor;
-	//	int recv_from_rank;
-	//	int xmit_to_rank;
-
-	int unified_buffer_offset = _unified_buffer_size;
 	_unified_buffer_size    += words;
-
-	ScatterPlane(point,dimension,x,cbmask,unified_buffer_offset,wraparound); // permute/extract/merge is done in comms phase
-
       }
     }
   }
@@ -984,11 +1026,14 @@ public:
   }
 
   template<class compressor>
-  int Gather(const Lattice<vobj> &rhs,int dimension,int shift,int cbmask,compressor & compress,int &face_idx)
+  int Gather(const Lattice<vobj> &rhs,int dimension,int shift,int cbmask,compressor & compress,int &face_idx, int point)
   {
     typedef typename cobj::vector_type vector_type;
     typedef typename cobj::scalar_type scalar_type;
 
+    int comms_send   = this->_comms_send[point] ;
+    int comms_recv   = this->_comms_recv[point] ;
+
     assert(rhs.Grid()==_grid);
     //	  conformable(_grid,rhs.Grid());
 
@@ -1011,78 +1056,93 @@ public:
 
       int sx        = (x+sshift)%rd;
       int comm_proc = ((x+sshift)/rd)%pd;
-
+      
       if (comm_proc) {
-
+	
 	int words = buffer_size;
 	if (cbmask != 0x3) words=words>>1;
 
 	int bytes =  words * compress.CommDatumSize();
 
 	int so  = sx*rhs.Grid()->_ostride[dimension]; // base offset for start of plane
-	if ( !face_table_computed ) {
+	int comm_off = u_comm_offset;
-	  face_table.resize(face_idx+1);
-	  std::vector<std::pair<int,int> >  face_table_host ;
-	  Gather_plane_table_compute ((GridBase *)_grid,dimension,sx,cbmask,u_comm_offset,face_table_host);
-	  face_table[face_idx].resize(face_table_host.size());
-	  acceleratorCopyToDevice(&face_table_host[0],
-				  &face_table[face_idx][0],
-				  face_table[face_idx].size()*sizeof(face_table_host[0]));
-	}
 
-	//      	int rank           = _grid->_processor;
 	int recv_from_rank;
 	int xmit_to_rank;
+	cobj *recv_buf;
+	cobj *send_buf;
 	_grid->ShiftedRanks(dimension,comm_proc,xmit_to_rank,recv_from_rank);
 
 	assert (xmit_to_rank   != _grid->ThisRank());
 	assert (recv_from_rank != _grid->ThisRank());
 
-	cobj *recv_buf;
+	if( comms_send ) {
-	if ( compress.DecompressionStep() ) {
+
-	  recv_buf=u_simd_recv_buf[0];
+	  if ( !face_table_computed ) {
-	} else {
+	    face_table.resize(face_idx+1);
-	  recv_buf=this->u_recv_buf_p;
+	    std::vector<std::pair<int,int> >  face_table_host ;
+	    Gather_plane_table_compute ((GridBase *)_grid,dimension,sx,cbmask,comm_off,face_table_host);
+	    face_table[face_idx].resize(face_table_host.size());
+	    acceleratorCopyToDevice(&face_table_host[0],
+				    &face_table[face_idx][0],
+				    face_table[face_idx].size()*sizeof(face_table_host[0]));
+	  }
+
+
+	  if ( compress.DecompressionStep() ) {
+	    recv_buf=u_simd_recv_buf[0];
+	  } else {
+	    recv_buf=this->u_recv_buf_p;
+	  }
+
+	  send_buf = this->u_send_buf_p; // Gather locally, must send
+	
+	  ////////////////////////////////////////////////////////
+	  // Gather locally
+	  ////////////////////////////////////////////////////////
+	  assert(send_buf!=NULL);
+
+	  Gather_plane_simple_table(face_table[face_idx],rhs,send_buf,compress,comm_off,so);
 	}
 
-	cobj *send_buf;
+	int duplicate = CheckForDuplicate(dimension,sx,comm_proc,(void *)&recv_buf[comm_off],0,bytes,cbmask);
-	send_buf = this->u_send_buf_p; // Gather locally, must send
+	if ( (!duplicate) ) { // Force comms for now
 
-	////////////////////////////////////////////////////////
+	  ///////////////////////////////////////////////////////////
-	// Gather locally
+	  // Build a list of things to do after we synchronise GPUs
-	////////////////////////////////////////////////////////
+	  // Start comms now???
-	gathertime-=usecond();
+	  ///////////////////////////////////////////////////////////
-	assert(send_buf!=NULL);
+	  AddPacket((void *)&send_buf[comm_off],
-	Gather_plane_simple_table(face_table[face_idx],rhs,send_buf,compress,u_comm_offset,so); face_idx++;
+		    (void *)&recv_buf[comm_off],
-	gathertime+=usecond();
+		    xmit_to_rank, comms_send,
-
+		    recv_from_rank, comms_recv,
-	///////////////////////////////////////////////////////////
+		    bytes);
-	// Build a list of things to do after we synchronise GPUs
+	}
-	// Start comms now???
+	
-	///////////////////////////////////////////////////////////
+	if ( compress.DecompressionStep()  && comms_recv ) {
-	AddPacket((void *)&send_buf[u_comm_offset],
+	  AddDecompress(&this->u_recv_buf_p[comm_off],
-		  (void *)&recv_buf[u_comm_offset],
+			&recv_buf[comm_off],
-		  xmit_to_rank,
-		  recv_from_rank,
-		  bytes);
-
-	if ( compress.DecompressionStep() ) {
-	  AddDecompress(&this->u_recv_buf_p[u_comm_offset],
-			&recv_buf[u_comm_offset],
 			words,Decompressions);
 	}
+	
 	u_comm_offset+=words;
+	face_idx++;
+
       }
     }
     return 0;
   }
 
   template<class compressor>
-  int  GatherSimd(const Lattice<vobj> &rhs,int dimension,int shift,int cbmask,compressor &compress,int & face_idx)
+  int  GatherSimd(const Lattice<vobj> &rhs,int dimension,int shift,int cbmask,compressor &compress,int & face_idx,int point)
   {
     const int Nsimd = _grid->Nsimd();
 
     const int maxl =2;// max layout in a direction
+
+    int comms_send   = this->_comms_send[point] ;
+    int comms_recv   = this->_comms_recv[point] ;
+
     int fd = _grid->_fdimensions[dimension];
     int rd = _grid->_rdimensions[dimension];
     int ld = _grid->_ldimensions[dimension];
@@ -1097,7 +1157,6 @@ public:
 
 
     int permute_type=_grid->PermuteType(dimension);
-    //    std::cout << "SimdNew permute type "<<permute_type<<std::endl;
 
     ///////////////////////////////////////////////
     // Simd direction uses an extract/merge pair
@@ -1131,8 +1190,9 @@ public:
 
       if ( any_offnode ) {
 
+	int comm_off = u_comm_offset;
 	for(int i=0;i<maxl;i++){
-	  spointers[i] = (cobj *) &u_simd_send_buf[i][u_comm_offset];
+	  spointers[i] = (cobj *) &u_simd_send_buf[i][comm_off];
 	}
 
 	int sx   = (x+sshift)%rd;
@@ -1141,18 +1201,17 @@ public:
 	  face_table.resize(face_idx+1);
 	  std::vector<std::pair<int,int> >  face_table_host ;
 				
-	  Gather_plane_table_compute ((GridBase *)_grid,dimension,sx,cbmask,u_comm_offset,face_table_host);
+	  Gather_plane_table_compute ((GridBase *)_grid,dimension,sx,cbmask,comm_off,face_table_host);
 	  face_table[face_idx].resize(face_table_host.size());
 	  acceleratorCopyToDevice(&face_table_host[0],
 				  &face_table[face_idx][0],
 				  face_table[face_idx].size()*sizeof(face_table_host[0]));
 	}
-	gathermtime-=usecond();
 
-	Gather_plane_exchange_table(face_table[face_idx],rhs,spointers,dimension,sx,cbmask,compress,permute_type);
+	if ( comms_send )
+	  Gather_plane_exchange_table(face_table[face_idx],rhs,spointers,dimension,sx,cbmask,compress,permute_type);
 	face_idx++;
 
-	gathermtime+=usecond();
 	//spointers[0] -- low
 	//spointers[1] -- high
 
@@ -1169,8 +1228,8 @@ public:
 	  int nbr_plane = nbr_ic;
 	  assert (sx == nbr_ox);
 
-	  auto rp = &u_simd_recv_buf[i        ][u_comm_offset];
+	  auto rp = &u_simd_recv_buf[i        ][comm_off];
-	  auto sp = &u_simd_send_buf[nbr_plane][u_comm_offset];
+	  auto sp = &u_simd_send_buf[nbr_plane][comm_off];
 
 	  if(nbr_proc){
 
@@ -1181,8 +1240,13 @@ public:
 
 	    rpointers[i] = rp;
 
-	    AddPacket((void *)sp,(void *)rp,xmit_to_rank,recv_from_rank,bytes);
+	    int duplicate = CheckForDuplicate(dimension,sx,nbr_proc,(void *)rp,i,bytes,cbmask);
-
+	    if ( !duplicate  ) { 
+	      AddPacket((void *)sp,(void *)rp,
+			xmit_to_rank,comms_send,
+			recv_from_rank,comms_recv,
+			bytes);
+	    }
 
 	  } else {
 
@@ -1191,9 +1255,12 @@ public:
 	  }
 	}
 
-	AddMerge(&this->u_recv_buf_p[u_comm_offset],rpointers,reduced_buffer_size,permute_type,Mergers);
+	if ( comms_recv ) {
+	  AddMerge(&this->u_recv_buf_p[comm_off],rpointers,reduced_buffer_size,permute_type,Mergers);
+	}
 
 	u_comm_offset     +=buffer_size;
+
       }
     }
     return 0;

Grid/tensors/Tensor_exp.h

@@ -55,7 +55,7 @@ template<class vtype, int N> accelerator_inline iVector<vtype, N> Exponentiate(c
 
 
 // Specialisation: Cayley-Hamilton exponential for SU(3)
-#ifndef GRID_CUDA
+#ifndef GRID_ACCELERATED
 template<class vtype, typename std::enable_if< GridTypeMapper<vtype>::TensorLevel == 0>::type * =nullptr> 
 accelerator_inline iMatrix<vtype,3> Exponentiate(const iMatrix<vtype,3> &arg, RealD alpha  , Integer Nexp = DEFAULT_MAT_EXP )
 {

Grid/threads/Accelerator.h

@@ -441,7 +441,7 @@ inline void acceleratorMemSet(void *base,int value,size_t bytes) { hipMemset(bas
 
 inline void acceleratorCopyDeviceToDeviceAsynch(void *from,void *to,size_t bytes) // Asynch
 {
-  hipMemcpyAsync(to,from,bytes, hipMemcpyDeviceToDevice,copyStream);
+  hipMemcpy(to,from,bytes, hipMemcpyDeviceToDevice);
 }
 inline void acceleratorCopySynchronise(void) { hipStreamSynchronize(copyStream); };
 
@@ -461,6 +461,8 @@ inline void acceleratorCopySynchronise(void) { hipStreamSynchronize(copyStream);
   accelerator_for2dNB(iter1, num1, iter2, num2, nsimd, { __VA_ARGS__ } ); \
   accelerator_barrier(dummy);
 
+#define GRID_ACCELERATED
+
 #endif
 
 //////////////////////////////////////////////

HMC/Mobius2p1f_DD_RHMC.cc

@@ -0,0 +1,232 @@
+/*************************************************************************************
+
+Grid physics library, www.github.com/paboyle/Grid
+
+Source file: ./tests/Test_hmc_EODWFRatio.cc
+
+Copyright (C) 2015-2016
+
+Author: Peter Boyle <pabobyle@ph.ed.ac.uk>
+Author: Guido Cossu <guido.cossu@ed.ac.uk>
+
+This program is free software; you can redistribute it and/or modify
+it under the terms of the GNU General Public License as published by
+the Free Software Foundation; either version 2 of the License, or
+(at your option) any later version.
+
+This program is distributed in the hope that it will be useful,
+but WITHOUT ANY WARRANTY; without even the implied warranty of
+MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+GNU General Public License for more details.
+
+You should have received a copy of the GNU General Public License along
+with this program; if not, write to the Free Software Foundation, Inc.,
+51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
+
+See the full license in the file "LICENSE" in the top level distribution
+directory
+*************************************************************************************/
+/*  END LEGAL */
+#include <Grid/Grid.h>
+
+int main(int argc, char **argv) {
+  using namespace Grid;
+
+  Grid_init(&argc, &argv);
+  int threads = GridThread::GetThreads();
+
+   // Typedefs to simplify notation
+  typedef WilsonImplR FermionImplPolicy;
+  typedef MobiusFermionR FermionAction;
+  typedef typename FermionAction::FermionField FermionField;
+
+  typedef Grid::XmlReader       Serialiser;
+
+  //::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
+  IntegratorParameters MD;
+  //  typedef GenericHMCRunner<LeapFrog> HMCWrapper;
+  //  MD.name    = std::string("Leap Frog");
+  //  typedef GenericHMCRunner<ForceGradient> HMCWrapper;
+  //  MD.name    = std::string("Force Gradient");
+  typedef GenericHMCRunner<MinimumNorm2> HMCWrapper;
+  MD.name    = std::string("MinimumNorm2");
+  MD.MDsteps =  4;
+  MD.trajL   = 1.0;
+
+  HMCparameters HMCparams;
+  HMCparams.StartTrajectory  = 8;
+  HMCparams.Trajectories     = 200;
+  HMCparams.NoMetropolisUntil=  0;
+  // "[HotStart, ColdStart, TepidStart, CheckpointStart]\n";
+  //  HMCparams.StartingType     =std::string("ColdStart");
+  HMCparams.StartingType     =std::string("CheckpointStart");
+  HMCparams.MD = MD;
+  HMCWrapper TheHMC(HMCparams);
+
+  // Grid from the command line arguments --grid and --mpi
+  TheHMC.Resources.AddFourDimGrid("gauge"); // use default simd lanes decomposition
+
+  CheckpointerParameters CPparams;
+  CPparams.config_prefix = "ckpoint_EODWF_lat";
+  CPparams.rng_prefix    = "ckpoint_EODWF_rng";
+  CPparams.saveInterval  = 1;
+  CPparams.format        = "IEEE64BIG";
+  TheHMC.Resources.LoadNerscCheckpointer(CPparams);
+
+  RNGModuleParameters RNGpar;
+  RNGpar.serial_seeds = "1 2 3 4 5";
+  RNGpar.parallel_seeds = "6 7 8 9 10";
+  TheHMC.Resources.SetRNGSeeds(RNGpar);
+
+  // Construct observables
+  // here there is too much indirection
+  typedef PlaquetteMod<HMCWrapper::ImplPolicy> PlaqObs;
+  TheHMC.Resources.AddObservable<PlaqObs>();
+  //////////////////////////////////////////////
+
+  const int Ls      = 16;
+  Real beta         = 2.13;
+  Real light_mass   = 0.01;
+  Real strange_mass = 0.04;
+  Real pv_mass      = 1.0;
+  RealD M5  = 1.8;
+  RealD b   = 1.0;
+  RealD c   = 0.0;
+
+  // FIXME:
+  // Same in MC and MD
+  // Need to mix precision too
+  OneFlavourRationalParams OFRp;
+  OFRp.lo       = 4.0e-3;
+  OFRp.hi       = 30.0;
+  OFRp.MaxIter  = 10000;
+  OFRp.tolerance= 1.0e-10;
+  OFRp.degree   = 16;
+  OFRp.precision= 50;
+
+  std::vector<Real> hasenbusch({ 0.01, 0.04, 0.2 , pv_mass });
+  std::vector<bool> dirichlet ({ true, true, true });
+
+  auto GridPtr   = TheHMC.Resources.GetCartesian();
+  auto GridRBPtr = TheHMC.Resources.GetRBCartesian();
+
+  ////////////////////////////////////////////////////////////////
+  // Domain decomposed
+  ////////////////////////////////////////////////////////////////
+  Coordinate latt4  = GridPtr->GlobalDimensions();
+  Coordinate mpi    = GridPtr->ProcessorGrid();
+  Coordinate shm;
+
+  GlobalSharedMemory::GetShmDims(mpi,shm);
+  
+  Coordinate CommDim(Nd);
+  for(int d=0;d<Nd;d++) CommDim[d]= (mpi[d]/shm[d])>1 ? 1 : 0;
+
+  Coordinate Dirichlet(Nd+1,0);
+  Dirichlet[1] = CommDim[0]*latt4[0]/mpi[0] * shm[0];
+  Dirichlet[2] = CommDim[1]*latt4[1]/mpi[1] * shm[1];
+  Dirichlet[3] = CommDim[2]*latt4[2]/mpi[2] * shm[2];
+  Dirichlet[4] = CommDim[3]*latt4[3]/mpi[3] * shm[3];
+
+  Coordinate Block4(Nd);
+  Block4[0] = Dirichlet[1];
+  Block4[1] = Dirichlet[2];
+  Block4[2] = Dirichlet[3];
+  Block4[3] = Dirichlet[4];
+  TheHMC.Resources.SetMomentumFilter(new DDHMCFilter<WilsonImplR::Field>(Block4));
+
+  //////////////////////////
+  // Fermion Grid
+  //////////////////////////
+  auto FGrid     = SpaceTimeGrid::makeFiveDimGrid(Ls,GridPtr);
+  auto FrbGrid   = SpaceTimeGrid::makeFiveDimRedBlackGrid(Ls,GridPtr);
+
+  IwasakiGaugeActionR GaugeAction(beta);
+
+  // temporarily need a gauge field
+  LatticeGaugeField U(GridPtr);
+
+  // These lines are unecessary if BC are all periodic
+  std::vector<Complex> boundary = {1,1,1,-1};
+  FermionAction::ImplParams Params(boundary);
+
+  double StoppingCondition = 1e-10;
+  double MaxCGIterations = 30000;
+  ConjugateGradient<FermionField>  CG(StoppingCondition,MaxCGIterations);
+
+  ////////////////////////////////////
+  // Collect actions
+  ////////////////////////////////////
+  ActionLevel<HMCWrapper::Field> Level1(1);
+  ActionLevel<HMCWrapper::Field> Level2(2);
+  ActionLevel<HMCWrapper::Field> Level3(8);
+
+  ////////////////////////////////////
+  // Strange action
+  ////////////////////////////////////
+  FermionAction StrangeOp (U,*FGrid,*FrbGrid,*GridPtr,*GridRBPtr,strange_mass,M5,b,c, Params);
+  FermionAction StrangePauliVillarsOp(U,*FGrid,*FrbGrid,*GridPtr,*GridRBPtr,pv_mass,  M5,b,c, Params);
+
+  OneFlavourEvenOddRatioRationalPseudoFermionAction<FermionImplPolicy> StrangePseudoFermion(StrangePauliVillarsOp,StrangeOp,OFRp);
+  //  Level1.push_back(&StrangePseudoFermion);
+
+  ////////////////////////////////////
+  // up down action
+  ////////////////////////////////////
+  std::vector<Real> light_den;
+  std::vector<Real> light_num;
+  std::vector<int> dirichlet_den;
+  std::vector<int> dirichlet_num;
+
+  int n_hasenbusch = hasenbusch.size();
+  light_den.push_back(light_mass);
+  dirichlet_den.push_back(0);
+  for(int h=0;h<n_hasenbusch;h++){
+    light_den.push_back(hasenbusch[h]);
+    light_num.push_back(hasenbusch[h]);
+    dirichlet_num.push_back(1);
+    dirichlet_den.push_back(1);
+  }
+  light_num.push_back(pv_mass);
+  dirichlet_num.push_back(0);
+
+  std::vector<FermionAction *> Numerators;
+  std::vector<FermionAction *> Denominators;
+  std::vector<TwoFlavourEvenOddRatioPseudoFermionAction<FermionImplPolicy> *> Quotients;
+  
+  for(int h=0;h<n_hasenbusch+1;h++){
+    std::cout << GridLogMessage << " 2f quotient Action  "<< light_num[h]<< " (" << dirichlet_num[h]
+	      <<") / " << light_den[h]<< " (" << dirichlet_den[h]<<")"<< std::endl;
+    Numerators.push_back  (new FermionAction(U,*FGrid,*FrbGrid,*GridPtr,*GridRBPtr,light_num[h],M5,b,c, Params));
+    Denominators.push_back(new FermionAction(U,*FGrid,*FrbGrid,*GridPtr,*GridRBPtr,light_den[h],M5,b,c, Params));
+    Quotients.push_back   (new TwoFlavourEvenOddRatioPseudoFermionAction<FermionImplPolicy>(*Numerators[h],*Denominators[h],CG,CG));
+    if ( dirichlet_den[h]==1) Denominators[h]->DirichletBlock(Dirichlet);
+    if ( dirichlet_num[h]==1) Numerators[h]->DirichletBlock(Dirichlet);
+  }
+
+  int nquo=Quotients.size();
+  Level1.push_back(Quotients[0]);
+  Level1.push_back(Quotients[nquo-1]);
+  for(int h=1;h<nquo-1;h++){
+    Level2.push_back(Quotients[h]);
+  }
+
+  /////////////////////////////////////////////////////////////
+  // Gauge action
+  /////////////////////////////////////////////////////////////
+  Level3.push_back(&GaugeAction);
+  TheHMC.TheAction.push_back(Level1);
+  TheHMC.TheAction.push_back(Level2);
+  TheHMC.TheAction.push_back(Level3);
+  std::cout << GridLogMessage << " Action complete "<< std::endl;
+
+  /////////////////////////////////////////////////////////////
+
+  std::cout << GridLogMessage << " Running the HMC "<< std::endl;
+  TheHMC.Run();  // no smearing
+
+  Grid_finalize();
+} // main
+
+
+

benchmarks/Benchmark_comms.cc

@@ -217,9 +217,9 @@ int main (int argc, char ** argv)
 	    dbytes+=
 	      Grid.StencilSendToRecvFromBegin(requests,
 					      (void *)&xbuf[mu][0],
-					      xmit_to_rank,
+					      xmit_to_rank,1,
 					      (void *)&rbuf[mu][0],
-					      recv_from_rank,
+					      recv_from_rank,1,
 					      bytes,mu);
 	
 	    comm_proc = mpi_layout[mu]-1;
@@ -228,9 +228,9 @@ int main (int argc, char ** argv)
 	    dbytes+=
 	      Grid.StencilSendToRecvFromBegin(requests,
 					      (void *)&xbuf[mu+4][0],
-					      xmit_to_rank,
+					      xmit_to_rank,1,
 					      (void *)&rbuf[mu+4][0],
-					      recv_from_rank,
+					      recv_from_rank,1,
 					      bytes,mu+4);
 	  
 	  }
@@ -309,9 +309,9 @@ int main (int argc, char ** argv)
 	    dbytes+=
 	      Grid.StencilSendToRecvFromBegin(requests,
 					      (void *)&xbuf[mu][0],
-					      xmit_to_rank,
+					      xmit_to_rank,1,
 					      (void *)&rbuf[mu][0],
-					      recv_from_rank,
+					      recv_from_rank,1,
 					      bytes,mu);
 	    Grid.StencilSendToRecvFromComplete(requests,mu);
 	    requests.resize(0);
@@ -322,9 +322,9 @@ int main (int argc, char ** argv)
 	    dbytes+=
 	      Grid.StencilSendToRecvFromBegin(requests,
 					      (void *)&xbuf[mu+4][0],
-					      xmit_to_rank,
+					      xmit_to_rank,1,
 					      (void *)&rbuf[mu+4][0],
-					      recv_from_rank,
+					      recv_from_rank,1,
 					      bytes,mu+4);
 	    Grid.StencilSendToRecvFromComplete(requests,mu+4);
 	    requests.resize(0);
@@ -411,8 +411,8 @@ int main (int argc, char ** argv)
 	      Grid.ShiftedRanks(mu,comm_proc,xmit_to_rank,recv_from_rank);
 	    }
             int tid = omp_get_thread_num();
-	    tbytes= Grid.StencilSendToRecvFrom((void *)&xbuf[dir][0], xmit_to_rank,
+	    tbytes= Grid.StencilSendToRecvFrom((void *)&xbuf[dir][0], xmit_to_rank,1,
-					       (void *)&rbuf[dir][0], recv_from_rank, bytes,tid);
+					       (void *)&rbuf[dir][0], recv_from_rank,1, bytes,tid);
 
 	    thread_critical { dbytes+=tbytes; }
 	  }

benchmarks/Benchmark_dwf_fp32.cc

@@ -32,18 +32,18 @@
 using namespace std;
 using namespace Grid;
 
-template<class d>
+////////////////////////
-struct scal {
+/// Move to domains ////
-  d internal;
+////////////////////////
+
+Gamma::Algebra Gmu [] = {
+			 Gamma::Algebra::GammaX,
+			 Gamma::Algebra::GammaY,
+			 Gamma::Algebra::GammaZ,
+			 Gamma::Algebra::GammaT
 };
 
-  Gamma::Algebra Gmu [] = {
+void Benchmark(int Ls, Coordinate Dirichlet);
-    Gamma::Algebra::GammaX,
-    Gamma::Algebra::GammaY,
-    Gamma::Algebra::GammaZ,
-    Gamma::Algebra::GammaT
-  };
-
 
 int main (int argc, char ** argv)
 {
@@ -52,24 +52,82 @@ int main (int argc, char ** argv)
 
   int threads = GridThread::GetThreads();
 
-  Coordinate latt4 = GridDefaultLatt();
   int Ls=16;
-  for(int i=0;i<argc;i++)
+  for(int i=0;i<argc;i++) {
     if(std::string(argv[i]) == "-Ls"){
       std::stringstream ss(argv[i+1]); ss >> Ls;
     }
+  }
 
+  //////////////////
+  // With comms
+  //////////////////
+  Coordinate Dirichlet(Nd+1,0);
+
+  std::cout << "\n\n\n\n\n\n" <<std::endl;
+  std::cout << GridLogMessage<< "++++++++++++++++++++++++++++++++++++++++++++++++" <<std::endl;
+  std::cout << GridLogMessage<< " Testing with full communication " <<std::endl;
+  std::cout << GridLogMessage<< "++++++++++++++++++++++++++++++++++++++++++++++++" <<std::endl;
+  
+  Benchmark(Ls,Dirichlet);
+
+  //////////////////
+  // Domain decomposed
+  //////////////////
+  Coordinate latt4  = GridDefaultLatt();
+  Coordinate mpi    = GridDefaultMpi();
+  Coordinate CommDim(Nd);
+  Coordinate shm;
+  GlobalSharedMemory::GetShmDims(mpi,shm);
+
+
+  //////////////////////
+  // Node level
+  //////////////////////
+  std::cout << "\n\n\n\n\n\n" <<std::endl;
+  std::cout << GridLogMessage<< "++++++++++++++++++++++++++++++++++++++++++++++++" <<std::endl;
+  std::cout << GridLogMessage<< " Testing without internode communication " <<std::endl;
+  std::cout << GridLogMessage<< "++++++++++++++++++++++++++++++++++++++++++++++++" <<std::endl;
+
+  for(int d=0;d<Nd;d++) CommDim[d]= (mpi[d]/shm[d])>1 ? 1 : 0;
+  Dirichlet[0] = 0;
+  Dirichlet[1] = CommDim[0]*latt4[0]/mpi[0] * shm[0];
+  Dirichlet[2] = CommDim[1]*latt4[1]/mpi[1] * shm[1];
+  Dirichlet[3] = CommDim[2]*latt4[2]/mpi[2] * shm[2];
+  Dirichlet[4] = CommDim[3]*latt4[3]/mpi[3] * shm[3];
+
+  Benchmark(Ls,Dirichlet);
+
+  std::cout << "\n\n\n\n\n\n" <<std::endl;
+
+  std::cout << GridLogMessage<< "++++++++++++++++++++++++++++++++++++++++++++++++" <<std::endl;
+  std::cout << GridLogMessage<< " Testing without intranode communication " <<std::endl;
+  std::cout << GridLogMessage<< "++++++++++++++++++++++++++++++++++++++++++++++++" <<std::endl;
+
+  for(int d=0;d<Nd;d++) CommDim[d]= mpi[d]>1 ? 1 : 0;
+  Dirichlet[0] = 0;
+  Dirichlet[1] = CommDim[0]*latt4[0]/mpi[0];
+  Dirichlet[2] = CommDim[1]*latt4[1]/mpi[1];
+  Dirichlet[3] = CommDim[2]*latt4[2]/mpi[2];
+  Dirichlet[4] = CommDim[3]*latt4[3]/mpi[3];
+  
+  Benchmark(Ls,Dirichlet);
+
+  Grid_finalize();
+  exit(0);
+}
+void Benchmark(int Ls, Coordinate Dirichlet)
+{
+  Coordinate latt4 = GridDefaultLatt();
   GridLogLayout();
 
   long unsigned int single_site_flops = 8*Nc*(7+16*Nc);
 
-
   GridCartesian         * UGrid   = SpaceTimeGrid::makeFourDimGrid(GridDefaultLatt(), GridDefaultSimd(Nd,vComplexF::Nsimd()),GridDefaultMpi());
   GridRedBlackCartesian * UrbGrid = SpaceTimeGrid::makeFourDimRedBlackGrid(UGrid);
   GridCartesian         * FGrid   = SpaceTimeGrid::makeFiveDimGrid(Ls,UGrid);
   GridRedBlackCartesian * FrbGrid = SpaceTimeGrid::makeFiveDimRedBlackGrid(Ls,UGrid);
 
-  std::cout << GridLogMessage << "Making s innermost grids"<<std::endl;
   GridCartesian         * sUGrid   = SpaceTimeGrid::makeFourDimDWFGrid(GridDefaultLatt(),GridDefaultMpi());
   GridRedBlackCartesian * sUrbGrid = SpaceTimeGrid::makeFourDimRedBlackGrid(sUGrid);
   GridCartesian         * sFGrid   = SpaceTimeGrid::makeFiveDimDWFGrid(Ls,UGrid);
@@ -80,9 +138,9 @@ int main (int argc, char ** argv)
 
   std::cout << GridLogMessage << "Initialising 4d RNG" << std::endl;
   GridParallelRNG          RNG4(UGrid);  RNG4.SeedUniqueString(std::string("The 4D RNG"));
+
   std::cout << GridLogMessage << "Initialising 5d RNG" << std::endl;
   GridParallelRNG          RNG5(FGrid);  RNG5.SeedUniqueString(std::string("The 5D RNG"));
-  std::cout << GridLogMessage << "Initialised RNGs" << std::endl;
 
   LatticeFermionF src   (FGrid); random(RNG5,src);
 #if 0
@@ -100,7 +158,6 @@ int main (int argc, char ** argv)
   src = src*N2;
 #endif
 
-
   LatticeFermionF result(FGrid); result=Zero();
   LatticeFermionF    ref(FGrid);    ref=Zero();
   LatticeFermionF    tmp(FGrid);
@@ -108,29 +165,31 @@ int main (int argc, char ** argv)
 
   std::cout << GridLogMessage << "Drawing gauge field" << std::endl;
   LatticeGaugeFieldF Umu(UGrid);
+  LatticeGaugeFieldF UmuCopy(UGrid);
   SU<Nc>::HotConfiguration(RNG4,Umu);
+  UmuCopy=Umu;
   std::cout << GridLogMessage << "Random gauge initialised " << std::endl;
-#if 0
-  Umu=1.0;
-  for(int mu=0;mu<Nd;mu++){
-    LatticeColourMatrixF ttmp(UGrid);
-    ttmp = PeekIndex<LorentzIndex>(Umu,mu);
-    //    if (mu !=2 ) ttmp = 0;
-    //    ttmp = ttmp* pow(10.0,mu);
-    PokeIndex<LorentzIndex>(Umu,ttmp,mu);
-  }
-  std::cout << GridLogMessage << "Forced to diagonal " << std::endl;
-#endif
 
+  ////////////////////////////////////
+  // Apply BCs
+  ////////////////////////////////////
+  Coordinate Block(4);
+  for(int d=0;d<4;d++)  Block[d]= Dirichlet[d+1];
+
+  std::cout << GridLogMessage << "Applying BCs for Dirichlet Block5 " << Dirichlet << std::endl;
+  std::cout << GridLogMessage << "Applying BCs for Dirichlet Block4 " << Block << std::endl;
+
+  DirichletFilter<LatticeGaugeFieldF> Filter(Block);
+  Filter.applyFilter(Umu);
+  
   ////////////////////////////////////
   // Naive wilson implementation
   ////////////////////////////////////
-  // replicate across fifth dimension
-  //  LatticeGaugeFieldF Umu5d(FGrid);
   std::vector<LatticeColourMatrixF> U(4,UGrid);
   for(int mu=0;mu<Nd;mu++){
     U[mu] = PeekIndex<LorentzIndex>(Umu,mu);
   }
+
   std::cout << GridLogMessage << "Setting up Cshift based reference " << std::endl;
 
   if (1)
@@ -190,12 +249,15 @@ int main (int argc, char ** argv)
   if ( WilsonKernelsStatic::Opt == WilsonKernelsStatic::OptInlineAsm ) std::cout << GridLogMessage<< "* Using Asm Nc=3   WilsonKernels" <<std::endl;
   std::cout << GridLogMessage<< "*****************************************************************" <<std::endl;
 
-  DomainWallFermionF Dw(Umu,*FGrid,*FrbGrid,*UGrid,*UrbGrid,mass,M5);
+  DomainWallFermionF::ImplParams p;
+  p.dirichlet=Dirichlet;
+  DomainWallFermionF Dw(Umu,*FGrid,*FrbGrid,*UGrid,*UrbGrid,mass,M5,p);
+  Dw.ImportGauge(Umu);
+  
   int ncall =300;
 
   if (1) {
     FGrid->Barrier();
-    Dw.ZeroCounters();
     Dw.Dhop(src,result,0);
     std::cout<<GridLogMessage<<"Called warmup"<<std::endl;
     double t0=usecond();
@@ -220,29 +282,20 @@ int main (int argc, char ** argv)
     double data_mem = (volume * (2*Nd+1)*Nd*Nc + (volume/Ls) *2*Nd*Nc*Nc) * simdwidth / nsimd * ncall / (1024.*1024.*1024.);
 
     std::cout<<GridLogMessage << "Called Dw "<<ncall<<" times in "<<t1-t0<<" us"<<std::endl;
-    //    std::cout<<GridLogMessage << "norm result "<< norm2(result)<<std::endl;
-    //    std::cout<<GridLogMessage << "norm ref    "<< norm2(ref)<<std::endl;
     std::cout<<GridLogMessage << "mflop/s =   "<< flops/(t1-t0)<<std::endl;
     std::cout<<GridLogMessage << "mflop/s per rank =  "<< flops/(t1-t0)/NP<<std::endl;
     std::cout<<GridLogMessage << "mflop/s per node =  "<< flops/(t1-t0)/NN<<std::endl;
-    std::cout<<GridLogMessage << "RF  GiB/s (base 2) =   "<< 1000000. * data_rf/((t1-t0))<<std::endl;
+    //    std::cout<<GridLogMessage << "RF  GiB/s (base 2) =   "<< 1000000. * data_rf/((t1-t0))<<std::endl;
-    std::cout<<GridLogMessage << "mem GiB/s (base 2) =   "<< 1000000. * data_mem/((t1-t0))<<std::endl;
+    //    std::cout<<GridLogMessage << "mem GiB/s (base 2) =   "<< 1000000. * data_mem/((t1-t0))<<std::endl;
     err = ref-result;
     std::cout<<GridLogMessage << "norm diff   "<< norm2(err)<<std::endl;
-    //exit(0);
 
     if(( norm2(err)>1.0e-4) ) {
-      /*
-      std::cout << "RESULT\n " << result<<std::endl;
-      std::cout << "REF   \n " << ref   <<std::endl;
-      std::cout << "ERR   \n " << err   <<std::endl;
-      */
       std::cout<<GridLogMessage << "WRONG RESULT" << std::endl;
       FGrid->Barrier();
       exit(-1);
     }
     assert (norm2(err)< 1.0e-4 );
-    Dw.Report();
   }
 
   if (1)
@@ -286,21 +339,20 @@ int main (int argc, char ** argv)
     }
     ref = -0.5*ref;
   }
-  //  dump=1;
+
-  Dw.Dhop(src,result,1);
+  Dw.Dhop(src,result,DaggerYes);
+
+  std::cout << GridLogMessage << "----------------------------------------------------------------" << std::endl;
   std::cout << GridLogMessage << "Compare to naive wilson implementation Dag to verify correctness" << std::endl;
+  std::cout << GridLogMessage << "----------------------------------------------------------------" << std::endl;
+
   std::cout<<GridLogMessage << "Called DwDag"<<std::endl;
   std::cout<<GridLogMessage << "norm dag result "<< norm2(result)<<std::endl;
   std::cout<<GridLogMessage << "norm dag ref    "<< norm2(ref)<<std::endl;
   err = ref-result;
   std::cout<<GridLogMessage << "norm dag diff   "<< norm2(err)<<std::endl;
-  if((norm2(err)>1.0e-4)){
+  assert((norm2(err)<1.0e-4));
-/*
+  
-	std::cout<< "DAG RESULT\n "  <<ref     << std::endl;
-	std::cout<< "DAG sRESULT\n " <<result  << std::endl;
-	std::cout<< "DAG ERR   \n "  << err    <<std::endl;
-*/
-  }
   LatticeFermionF src_e (FrbGrid);
   LatticeFermionF src_o (FrbGrid);
   LatticeFermionF r_e   (FrbGrid);
@@ -330,7 +382,6 @@ int main (int argc, char ** argv)
   if ( WilsonKernelsStatic::Opt == WilsonKernelsStatic::OptInlineAsm ) std::cout << GridLogMessage<< "* Using Asm Nc=3   WilsonKernels" <<std::endl;
   std::cout << GridLogMessage<< "*********************************************************" <<std::endl;
   {
-    Dw.ZeroCounters();
     FGrid->Barrier();
     Dw.DhopEO(src_o,r_e,DaggerNo);
     double t0=usecond();
@@ -352,7 +403,6 @@ int main (int argc, char ** argv)
     std::cout<<GridLogMessage << "Deo mflop/s =   "<< flops/(t1-t0)<<std::endl;
     std::cout<<GridLogMessage << "Deo mflop/s per rank   "<< flops/(t1-t0)/NP<<std::endl;
     std::cout<<GridLogMessage << "Deo mflop/s per node   "<< flops/(t1-t0)/NN<<std::endl;
-    Dw.Report();
   }
   Dw.DhopEO(src_o,r_e,DaggerNo);
   Dw.DhopOE(src_e,r_o,DaggerNo);
@@ -367,13 +417,7 @@ int main (int argc, char ** argv)
 
   err = r_eo-result;
   std::cout<<GridLogMessage << "norm diff   "<< norm2(err)<<std::endl;
-  if((norm2(err)>1.0e-4)){
+  assert(norm2(err)<1.0e-4);
-    /*
-	std::cout<< "Deo RESULT\n " <<r_eo << std::endl;
-	std::cout<< "Deo REF\n " <<result  << std::endl;
-	std::cout<< "Deo ERR   \n " << err <<std::endl;
-    */
-  }
 
   pickCheckerboard(Even,src_e,err);
   pickCheckerboard(Odd,src_o,err);
@@ -382,6 +426,4 @@ int main (int argc, char ** argv)
 
   assert(norm2(src_e)<1.0e-4);
   assert(norm2(src_o)<1.0e-4);
-  Grid_finalize();
-  exit(0);
 }

benchmarks/Benchmark_mooee.cc

@@ -81,8 +81,8 @@ int main (int argc, char ** argv)
     Vector<Coeff_t> diag = Dw.bs;
     Vector<Coeff_t> upper= Dw.cs;
     Vector<Coeff_t> lower= Dw.cs;
-    upper[Ls-1]=-Dw.mass*upper[Ls-1];
+    upper[Ls-1]=-Dw.mass_minus*upper[Ls-1];
-    lower[0]   =-Dw.mass*lower[0];
+    lower[0]   =-Dw.mass_plus*lower[0];
     
     LatticeFermion r_eo(FGrid);
     LatticeFermion src_e (FrbGrid);

benchmarks/Benchmark_wilson_sweep.cc

@@ -44,6 +44,13 @@ void bench_wilson (
 		   double const     volume,
 		   int const           dag );
 
+void bench_wilson_eo (
+       LatticeFermion &    src,
+       LatticeFermion & result,
+       WilsonFermionR &     Dw,
+       double const     volume,
+       int const           dag );
+
 int main (int argc, char ** argv)
 {
   Grid_init(&argc,&argv);
@@ -110,8 +117,8 @@ int main (int argc, char ** argv)
 	  bench_wilson(src,result,Dw,volume,DaggerYes);
 	  std::cout << "\t";
     // EO
-	  bench_wilson(src,result,Dw,volume,DaggerNo);
+    bench_wilson_eo(src_o,result_e,Dw,volume,DaggerNo);
-	  bench_wilson(src,result,Dw,volume,DaggerYes);
+    bench_wilson_eo(src_o,result_e,Dw,volume,DaggerYes);
 	  std::cout << std::endl;
 	}
     }

configure.ac

@@ -159,7 +159,7 @@ case ${ac_ZMOBIUS} in
 esac
 ############### Nc
 AC_ARG_ENABLE([Nc],
-    [AC_HELP_STRING([--enable-Nc=2|3|4], [enable number of colours])],
+    [AC_HELP_STRING([--enable-Nc=2|3|4|5], [enable number of colours])],
     [ac_Nc=${enable_Nc}], [ac_Nc=3])
 
 case ${ac_Nc} in

examples/Example_Laplacian.cc

@@ -93,14 +93,14 @@ template<class Field> class FreeLaplacianStencil : public SparseMatrixBase<Field
 {
 public:
   typedef typename Field::vector_object siteObject;
-  typedef CartesianStencil<siteObject, siteObject, int> StencilImpl;
+  typedef CartesianStencil<siteObject, siteObject, SimpleStencilParams> StencilImpl;
 
   GridBase *grid;
   StencilImpl Stencil;
   SimpleCompressor<siteObject> Compressor;
   
   FreeLaplacianStencil(GridBase *_grid)
-    : Stencil    (_grid,6,Even,directions,displacements,0), grid(_grid)
+    : Stencil    (_grid,6,Even,directions,displacements,SimpleStencilParams()), grid(_grid)
   {  };
   
   virtual GridBase *Grid(void) { return grid; };
@@ -168,7 +168,8 @@ public:
   typedef iImplDoubledGaugeField<Simd> SiteDoubledGaugeField;
   typedef Lattice<SiteDoubledGaugeField> DoubledGaugeField;
 
-  typedef CartesianStencil<siteObject, siteObject, int> StencilImpl;
+  typedef CartesianStencil<siteObject, siteObject,SimpleStencilParams> StencilImpl;
+  SimpleStencilParams p;
 
   GridBase *grid;
   StencilImpl Stencil;
@@ -177,7 +178,7 @@ public:
   CovariantLaplacianStencil(GaugeField &Umu)
     :
       grid(Umu.Grid()),
-      Stencil    (grid,6,Even,directions,displacements,0),
+      Stencil    (grid,6,Even,directions,displacements,p),
       Uds(grid)
   {
     for (int mu = 0; mu < Nd; mu++) {

systems/Crusher/dwf.slurm

@@ -3,28 +3,28 @@
 #SBATCH -A LGT104
 #SBATCH -t 01:00:00
 ##SBATCH -U openmpThu
-##SBATCH -p ecp
 #SBATCH -J DWF
 #SBATCH -o DWF.%J
 #SBATCH -e DWF.%J
 #SBATCH -N 1
-#SBATCH -n 1
+#SBATCH -n 8
-#SBATCH --exclusive  
+#SBATCH --exclusive
+#SBATCH --gpu-bind=map_gpu:0,1,2,3,7,6,5,4
 
 DIR=.
 module list
-#export MPIR_CVAR_GPU_EAGER_DEVICE_MEM=0
+export MPIR_CVAR_GPU_EAGER_DEVICE_MEM=0
 export MPICH_GPU_SUPPORT_ENABLED=1
-export MPICH_SMP_SINGLE_COPY_MODE=XPMEM
+#export MPICH_SMP_SINGLE_COPY_MODE=XPMEM
-#export MPICH_SMP_SINGLE_COPY_MODE=NONE
+export MPICH_SMP_SINGLE_COPY_MODE=NONE
 #export MPICH_SMP_SINGLE_COPY_MODE=CMA
 export OMP_NUM_THREADS=1
 
-AT=8
 echo MPICH_SMP_SINGLE_COPY_MODE $MPICH_SMP_SINGLE_COPY_MODE
 
-PARAMS=" --accelerator-threads ${AT} --grid 24.24.24.24 --shm-mpi 0 --mpi 1.1.1.1"
+PARAMS=" --accelerator-threads 16 --grid 32.32.32.256 --mpi 1.1.1.8 --comms-overlap --shm 2048 --shm-mpi 0"
-
+echo $PARAMS
-srun --gpus-per-task 1 -n1 ./benchmarks/Benchmark_dwf_fp32 $PARAMS
+srun --gpus-per-task 1 -n8  ./benchmarks/Benchmark_dwf_fp32 $PARAMS
+
 
 

systems/Crusher/dwf8.slurm

@@ -6,22 +6,43 @@
 #SBATCH -J DWF
 #SBATCH -o DWF.%J
 #SBATCH -e DWF.%J
-#SBATCH -N 1
+#SBATCH -N 8
-#SBATCH -n 8
+#SBATCH -n 64
 #SBATCH --exclusive
+#SBATCH --gpu-bind=map_gpu:0,1,2,3,7,6,5,4
 
 DIR=.
 module list
+export MPICH_OFI_NIC_POLICY=GPU
 export MPIR_CVAR_GPU_EAGER_DEVICE_MEM=0
 export MPICH_GPU_SUPPORT_ENABLED=1
-export MPICH_SMP_SINGLE_COPY_MODE=XPMEM
+#export MPICH_SMP_SINGLE_COPY_MODE=XPMEM
-#export MPICH_SMP_SINGLE_COPY_MODE=NONE
 #export MPICH_SMP_SINGLE_COPY_MODE=CMA
+export MPICH_SMP_SINGLE_COPY_MODE=NONE
 export OMP_NUM_THREADS=1
 
 echo MPICH_SMP_SINGLE_COPY_MODE $MPICH_SMP_SINGLE_COPY_MODE
-PARAMS=" --accelerator-threads 8 --grid 32.64.64.64 --mpi 1.2.2.2 --comms-overlap --shm 2048 --shm-mpi 0"
 
-srun --gpus-per-task 1 -n8 ./mpiwrapper.sh ./benchmarks/Benchmark_dwf_fp32 $PARAMS
+PARAMS=" --accelerator-threads 16 --grid 64.64.64.256 --mpi 2.2.2.8 --comms-overlap --shm 2048 --shm-mpi 0"
+echo $PARAMS
+#srun --gpus-per-task 1 -N8 -n64  ./benchmarks/Benchmark_dwf_fp32 $PARAMS > dwf.64.64.64.256.8node
+
+
+PARAMS=" --accelerator-threads 16 --grid 64.64.64.32 --mpi 4.4.4.1 --comms-overlap --shm 2048 --shm-mpi 1"
+echo $PARAMS
+srun --gpus-per-task 1 -N8 -n64  ./benchmarks/Benchmark_dwf_fp32 $PARAMS > dwf.64.64.64.32.8node
+
+PARAMS=" --accelerator-threads 16 --grid 64.64.64.32 --mpi 4.4.4.1 --comms-overlap --shm 2048 --shm-mpi 0"
+echo $PARAMS
+#srun --gpus-per-task 1 -N8 -n64  ./benchmarks/Benchmark_dwf_fp32 $PARAMS > dwf.64.64.64.32.8node.shm0
+
+PARAMS=" --accelerator-threads 16 --grid 64.64.64.32 --mpi 2.2.2.8 --comms-overlap --shm 2048 --shm-mpi 1"
+echo $PARAMS
+#srun --gpus-per-task 1 -N8 -n64  ./benchmarks/Benchmark_ITT $PARAMS > itt.8node
+
+PARAMS=" --accelerator-threads 16 --grid 64.64.64.32 --mpi 2.2.2.8 --comms-overlap --shm 2048 --shm-mpi 0"
+echo $PARAMS
+#srun --gpus-per-task 1 -N8 -n64  ./benchmarks/Benchmark_ITT $PARAMS > itt.8node_shm0
+
 
 

systems/Crusher/mpiwrapper.sh

@@ -1,10 +1,11 @@
 #!/bin/bash
 
 lrank=$SLURM_LOCALID
+lgpu=(0 1 2 3 7 6 5 4)
 
-export ROCR_VISIBLE_DEVICES=$SLURM_LOCALID
+export ROCR_VISIBLE_DEVICES=${lgpu[$lrank]}
 
-echo "`hostname` - $lrank device=$ROCR_VISIBLE_DEVICES binding=$BINDING"
+echo "`hostname` - $lrank device=$ROCR_VISIBLE_DEVICES "
 
 $*
 

systems/Perlmutter/config-command

@@ -1,9 +1,14 @@
+DIR=`pwd`
+PREFIX=$DIR/../Prequisites/install/
 ../../configure \
     --enable-comms=mpi \
     --enable-simd=GPU \
     --enable-shm=nvlink \
     --enable-gen-simd-width=64 \
     --enable-accelerator=cuda \
+    --enable-setdevice \
+    --disable-accelerator-cshift \
+    --with-gmp=$PREFIX \
     --disable-fermion-reps \
     --disable-unified \
     --disable-gparity \

systems/Perlmutter/dwf4.slurm

@@ -1,24 +1,27 @@
 #!/bin/bash
-#SBATCH -A mp13
+#SBATCH -A m3886_g
 #SBATCH -C gpu
-#SBATCH -q regular
+#SBATCH -q debug
 #SBATCH -t 0:20:00
-#SBATCH -n 16
-#SBATCH --ntasks-per-node=4
 #SBATCH -c 32
-#SBATCH --exclusive
+#SBATCH -N 1
+#SBATCH -n 4
+#SBATCH --ntasks-per-node=4
 #SBATCH --gpus-per-task=1
-#SBATCH --gpu-bind=map_gpu:0,1,2,3
+#SBATCH --exclusive
+#SBATCH --gpu-bind=none
 
 export SLURM_CPU_BIND="cores"
-export MPICH_RDMA_ENABLED_CUDA=1
 export MPICH_GPU_SUPPORT_ENABLED=1
-srun ./benchmarks/Benchmark_comms_host_device --mpi 2.2.2.2  --accelerator-threads 8 > comms.4node
+export MPICH_RDMA_ENABLED_CUDA=1
+export MPICH_GPU_IPC_ENABLED=1
+export MPICH_GPU_EAGER_REGISTER_HOST_MEM=0
+export MPICH_GPU_NO_ASYNC_MEMCPY=0
+#export MPICH_SMP_SINGLE_COPY_MODE=CMA
 
-OPT="--comms-overlap --comms-concurrent --shm-mpi 0"
+OPT="--comms-overlap --shm-mpi 1"
-srun ./benchmarks/Benchmark_dwf_fp32 --mpi 2.2.2.2 --grid 64.64.64.64 --accelerator-threads 8 --shm 2048 $OPT > dwf.64.64.64.64.4node.opt0
+VOL=64.64.32.32
-srun ./benchmarks/Benchmark_dwf_fp32 --mpi 2.2.2.2 --grid 48.48.48.48 --accelerator-threads 8 --shm 2048 $OPT > dwf.48.48.48.48.4node.opt0
+srun ./benchmarks/Benchmark_dwf_fp32 --mpi 2.2.1.1 --grid $VOL --accelerator-threads 8 --shm 2048 $OPT
+#srun ./benchmarks/Benchmark_dwf_fp32 --mpi 2.1.1.4 --grid $VOL --accelerator-threads 8 --shm 2048 $OPT
+#srun ./benchmarks/Benchmark_dwf_fp32 --mpi 1.1.1.8 --grid $VOL --accelerator-threads 8 --shm 2048 $OPT
 
-OPT="--comms-overlap --comms-concurrent --shm-mpi 1"
-srun ./benchmarks/Benchmark_dwf_fp32 --mpi 2.2.2.2 --grid 64.64.64.64 --accelerator-threads 8 --shm 2048 $OPT > dwf.64.64.64.64.4node.opt1
-srun ./benchmarks/Benchmark_dwf_fp32 --mpi 2.2.2.2 --grid 48.48.48.48 --accelerator-threads 8 --shm 2048 $OPT > dwf.48.48.48.48.4node.opt1

systems/Perlmutter/sourceme.sh

@@ -1,4 +1,4 @@
 
 export CRAY_ACCEL_TARGET=nvidia80
 
-module load PrgEnv-gnu cpe-cuda cuda
+module load PrgEnv-gnu cpe-cuda cudatoolkit/11.4

systems/Spock/config-command

@@ -6,6 +6,8 @@
 --enable-simd=GPU \
 --disable-fermion-reps \
 --disable-gparity \
+--with-gmp=$OLCF_GMP_ROOT \
+--with-mpfr=/opt/cray/pe/gcc/mpfr/3.1.4/ \
 CXX=hipcc MPICXX=mpicxx \
 CXXFLAGS="-fPIC -I/opt/rocm-4.3.0/include/ -std=c++14 -I${MPICH_DIR}/include " \
 --prefix=/ccs/home/chulwoo/Grid \

systems/Spock/dwf8.slurm

@@ -1,8 +1,7 @@
 #!/bin/bash
 # Begin LSF Directives
 #SBATCH -A LGT104
-#SBATCH -t 01:00:00
+#SBATCH -t 3:00:00
-##SBATCH -U openmpThu
 #SBATCH -p ecp
 #SBATCH -J DWF
 #SBATCH -o DWF.%J
@@ -14,13 +13,12 @@ DIR=.
 module list
 export MPIR_CVAR_GPU_EAGER_DEVICE_MEM=0
 export MPICH_GPU_SUPPORT_ENABLED=1
-#export MPICH_SMP_SINGLE_COPY_MODE=XPMEM
+export MPICH_SMP_SINGLE_COPY_MODE=CMA
-export MPICH_SMP_SINGLE_COPY_MODE=NONE
+
-#export MPICH_SMP_SINGLE_COPY_MODE=CMA
 export OMP_NUM_THREADS=8
 
 AT=8
 echo MPICH_SMP_SINGLE_COPY_MODE $MPICH_SMP_SINGLE_COPY_MODE
-PARAMS=" --accelerator-threads ${AT} --grid 32.64.64.64 --mpi 1.2.2.2 --comms-overlap --shm 2048 --shm-mpi 0"
+PARAMS=" --accelerator-threads ${AT} --grid 16.16.16.48 --mpi 1.2.2.2 --comms-overlap --shm 2048 --shm-mpi 0"
-srun -n8 --label -c$OMP_NUM_THREADS --gpus-per-task=1 ./mpiwrapper.sh ./benchmarks/Benchmark_dwf_fp32 $PARAMS
+srun -N2 -n8 --label -c$OMP_NUM_THREADS --gpus-per-task=1 ./mpiwrapper.sh ./HMC/Mobius2p1f_DD_RHMC $PARAMS
 

systems/Spock/sourceme.sh

@@ -1,5 +1,9 @@
+module load emacs
 module load PrgEnv-gnu
-module load rocm/4.3.0
+module load rocm/4.5.0
 module load gmp
 module load cray-fftw
 module load craype-accel-amd-gfx908
+export MPIR_CVAR_GPU_EAGER_DEVICE_MEM=0
+export MPICH_GPU_SUPPORT_ENABLED=1
+export LD_LIBRARY_PATH=/opt/cray/pe/gcc/mpfr/3.1.4/lib/:$LD_LIBRARY_PATH

systems/Tursa/dwf.4node.perf

@@ -1,25 +1,25 @@
-tu-c0r0n00 - 0 device=0 binding=--interleave=0,1
+tu-c0r3n00 - 0 device=0 binding=--interleave=0,1
-tu-c0r0n00 - 1 device=1 binding=--interleave=2,3
+tu-c0r3n00 - 1 device=1 binding=--interleave=2,3
-tu-c0r0n09 - 1 device=1 binding=--interleave=2,3
+tu-c0r3n00 - 2 device=2 binding=--interleave=4,5
-tu-c0r0n00 - 2 device=2 binding=--interleave=4,5
+tu-c0r3n00 - 3 device=3 binding=--interleave=6,7
-tu-c0r0n06 - 0 device=0 binding=--interleave=0,1
+tu-c0r3n06 - 1 device=1 binding=--interleave=2,3
-tu-c0r0n06 - 1 device=1 binding=--interleave=2,3
+tu-c0r3n06 - 3 device=3 binding=--interleave=6,7
-tu-c0r0n09 - 0 device=0 binding=--interleave=0,1
+tu-c0r3n06 - 0 device=0 binding=--interleave=0,1
-tu-c0r0n09 - 2 device=2 binding=--interleave=4,5
+tu-c0r3n06 - 2 device=2 binding=--interleave=4,5
-tu-c0r0n03 - 1 device=1 binding=--interleave=2,3
+tu-c0r3n03 - 1 device=1 binding=--interleave=2,3
-tu-c0r0n06 - 2 device=2 binding=--interleave=4,5
+tu-c0r3n03 - 2 device=2 binding=--interleave=4,5
-tu-c0r0n09 - 3 device=3 binding=--interleave=6,7
+tu-c0r3n03 - 0 device=0 binding=--interleave=0,1
-tu-c0r0n00 - 3 device=3 binding=--interleave=6,7
+tu-c0r3n03 - 3 device=3 binding=--interleave=6,7
-tu-c0r0n03 - 0 device=0 binding=--interleave=0,1
+tu-c0r3n09 - 0 device=0 binding=--interleave=0,1
-tu-c0r0n03 - 2 device=2 binding=--interleave=4,5
+tu-c0r3n09 - 1 device=1 binding=--interleave=2,3
-tu-c0r0n06 - 3 device=3 binding=--interleave=6,7
+tu-c0r3n09 - 2 device=2 binding=--interleave=4,5
-tu-c0r0n03 - 3 device=3 binding=--interleave=6,7
+tu-c0r3n09 - 3 device=3 binding=--interleave=6,7
 OPENMPI detected
 AcceleratorCudaInit: using default device 
-AcceleratorCudaInit: assume user either uses a) IBM jsrun, or 
+AcceleratorCudaInit: assume user either uses
+AcceleratorCudaInit: a) IBM jsrun, or 
 AcceleratorCudaInit: b) invokes through a wrapping script to set CUDA_VISIBLE_DEVICES, UCX_NET_DEVICES, and numa binding 
-AcceleratorCudaInit: Configure options --enable-summit, --enable-select-gpu=no 
+AcceleratorCudaInit: Configure options --enable-setdevice=no 
-AcceleratorCudaInit: ================================================
 OPENMPI detected
 AcceleratorCudaInit[0]: ========================
 AcceleratorCudaInit[0]: Device Number    : 0
@@ -33,11 +33,41 @@ AcceleratorCudaInit[0]:   pciBusID: 3
 AcceleratorCudaInit[0]:   pciDeviceID: 0 
 AcceleratorCudaInit[0]: maxGridSize (2147483647,65535,65535)
 AcceleratorCudaInit: using default device 
-AcceleratorCudaInit: assume user either uses a) IBM jsrun, or 
+AcceleratorCudaInit: assume user either uses
+AcceleratorCudaInit: a) IBM jsrun, or 
 AcceleratorCudaInit: b) invokes through a wrapping script to set CUDA_VISIBLE_DEVICES, UCX_NET_DEVICES, and numa binding 
-AcceleratorCudaInit: Configure options --enable-summit, --enable-select-gpu=no 
+AcceleratorCudaInit: Configure options --enable-setdevice=no 
-AcceleratorCudaInit: ================================================
 OPENMPI detected
+AcceleratorCudaInit: using default device 
+AcceleratorCudaInit: assume user either uses
+AcceleratorCudaInit: a) IBM jsrun, or 
+AcceleratorCudaInit: b) invokes through a wrapping script to set CUDA_VISIBLE_DEVICES, UCX_NET_DEVICES, and numa binding 
+AcceleratorCudaInit: Configure options --enable-setdevice=no 
+OPENMPI detected
+AcceleratorCudaInit: using default device 
+AcceleratorCudaInit: assume user either uses
+AcceleratorCudaInit: a) IBM jsrun, or 
+AcceleratorCudaInit: b) invokes through a wrapping script to set CUDA_VISIBLE_DEVICES, UCX_NET_DEVICES, and numa binding 
+AcceleratorCudaInit: Configure options --enable-setdevice=no 
+OPENMPI detected
+AcceleratorCudaInit: using default device 
+AcceleratorCudaInit: assume user either uses
+AcceleratorCudaInit: a) IBM jsrun, or 
+AcceleratorCudaInit: b) invokes through a wrapping script to set CUDA_VISIBLE_DEVICES, UCX_NET_DEVICES, and numa binding 
+AcceleratorCudaInit: Configure options --enable-setdevice=no 
+OPENMPI detected
+OPENMPI detected
+AcceleratorCudaInit: using default device 
+AcceleratorCudaInit: assume user either uses
+AcceleratorCudaInit: a) IBM jsrun, or 
+AcceleratorCudaInit: b) invokes through a wrapping script to set CUDA_VISIBLE_DEVICES, UCX_NET_DEVICES, and numa binding 
+AcceleratorCudaInit: Configure options --enable-setdevice=no 
+OPENMPI detected
+AcceleratorCudaInit: using default device 
+AcceleratorCudaInit: assume user either uses
+AcceleratorCudaInit: a) IBM jsrun, or 
+AcceleratorCudaInit: b) invokes through a wrapping script to set CUDA_VISIBLE_DEVICES, UCX_NET_DEVICES, and numa binding 
+AcceleratorCudaInit: Configure options --enable-setdevice=no 
 AcceleratorCudaInit[0]: ========================
 AcceleratorCudaInit[0]: Device Number    : 0
 AcceleratorCudaInit[0]: ========================
@@ -50,43 +80,25 @@ AcceleratorCudaInit[0]:   pciBusID: 3
 AcceleratorCudaInit[0]:   pciDeviceID: 0 
 AcceleratorCudaInit[0]: maxGridSize (2147483647,65535,65535)
 AcceleratorCudaInit: using default device 
-AcceleratorCudaInit: assume user either uses a) IBM jsrun, or 
+AcceleratorCudaInit: assume user either uses
+AcceleratorCudaInit: a) IBM jsrun, or 
 AcceleratorCudaInit: b) invokes through a wrapping script to set CUDA_VISIBLE_DEVICES, UCX_NET_DEVICES, and numa binding 
-AcceleratorCudaInit: Configure options --enable-summit, --enable-select-gpu=no 
+AcceleratorCudaInit: Configure options --enable-setdevice=no 
+local rank 1 device 0 bus id: 0000:44:00.0
 AcceleratorCudaInit: ================================================
-OPENMPI detected
+local rank 0 device 0 bus id: 0000:03:00.0
-AcceleratorCudaInit: using default device 
-AcceleratorCudaInit: assume user either uses a) IBM jsrun, or 
-AcceleratorCudaInit: b) invokes through a wrapping script to set CUDA_VISIBLE_DEVICES, UCX_NET_DEVICES, and numa binding 
-AcceleratorCudaInit: Configure options --enable-summit, --enable-select-gpu=no 
 AcceleratorCudaInit: ================================================
-OPENMPI detected
-AcceleratorCudaInit: using default device 
-AcceleratorCudaInit: assume user either uses a) IBM jsrun, or 
-AcceleratorCudaInit: b) invokes through a wrapping script to set CUDA_VISIBLE_DEVICES, UCX_NET_DEVICES, and numa binding 
-AcceleratorCudaInit: Configure options --enable-summit, --enable-select-gpu=no 
 AcceleratorCudaInit: ================================================
-OPENMPI detected
-AcceleratorCudaInit: using default device 
-AcceleratorCudaInit: assume user either uses a) IBM jsrun, or 
-AcceleratorCudaInit: b) invokes through a wrapping script to set CUDA_VISIBLE_DEVICES, UCX_NET_DEVICES, and numa binding 
-AcceleratorCudaInit: Configure options --enable-summit, --enable-select-gpu=no 
 AcceleratorCudaInit: ================================================
-OPENMPI detected
-AcceleratorCudaInit: using default device 
-AcceleratorCudaInit: assume user either uses a) IBM jsrun, or 
-AcceleratorCudaInit: b) invokes through a wrapping script to set CUDA_VISIBLE_DEVICES, UCX_NET_DEVICES, and numa binding 
-AcceleratorCudaInit: Configure options --enable-summit, --enable-select-gpu=no 
 AcceleratorCudaInit: ================================================
-OPENMPI detected
-AcceleratorCudaInit: using default device 
-AcceleratorCudaInit: assume user either uses a) IBM jsrun, or 
-AcceleratorCudaInit: b) invokes through a wrapping script to set CUDA_VISIBLE_DEVICES, UCX_NET_DEVICES, and numa binding 
-AcceleratorCudaInit: Configure options --enable-summit, --enable-select-gpu=no 
 AcceleratorCudaInit: ================================================
+local rank 0 device 0 bus id: 0000:03:00.0
+AcceleratorCudaInit: ================================================
+AcceleratorCudaInit: ================================================
+local rank 2 device 0 bus id: 0000:84:00.0
 SharedMemoryMpi:  World communicator of size 16
 SharedMemoryMpi:  Node  communicator of size 4
-0SharedMemoryMpi:  SharedMemoryMPI.cc acceleratorAllocDevice 2147483648bytes at 0x7fcd80000000 for comms buffers 
+0SharedMemoryMpi:  SharedMemoryMPI.cc acceleratorAllocDevice 2147483648bytes at 0x153960000000 for comms buffers 
 Setting up IPC
 
 __|__|__|__|__|__|__|__|__|__|__|__|__|__|__
@@ -116,7 +128,7 @@ This program is distributed in the hope that it will be useful,
 but WITHOUT ANY WARRANTY; without even the implied warranty of
 MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 GNU General Public License for more details.
-Current Grid git commit hash=9d2238148c56e3fbadfa95dcabf2b83d4bde14cd: (HEAD -> develop) uncommited changes
+Current Grid git commit hash=da06d15f73184ceb15d66d4e7e702b02fed7b940: (HEAD -> feature/dirichlet, develop) uncommited changes
 
 Grid : Message : ================================================ 
 Grid : Message : MPI is initialised and logging filters activated 
@@ -124,122 +136,102 @@ Grid : Message : ================================================
 Grid : Message : Requested 2147483648 byte stencil comms buffers 
 Grid : Message : MemoryManager Cache 34004218675 bytes 
 Grid : Message : MemoryManager::Init() setting up
-Grid : Message : MemoryManager::Init() cache pool for recent allocations: SMALL 32 LARGE 8
+Grid : Message : MemoryManager::Init() cache pool for recent allocations: SMALL 8 LARGE 2
 Grid : Message : MemoryManager::Init() Non unified: Caching accelerator data in dedicated memory
 Grid : Message : MemoryManager::Init() Using cudaMalloc
-Grid : Message : 1.198523 s : Grid Layout
+Grid : Message : 1.875883 s : Grid Layout
-Grid : Message : 1.198530 s : 	Global lattice size  : 64 64 64 64 
+Grid : Message : 1.875893 s : 	Global lattice size  : 64 64 64 64 
-Grid : Message : 1.198534 s : 	OpenMP threads       : 4
+Grid : Message : 1.875897 s : 	OpenMP threads       : 4
-Grid : Message : 1.198535 s : 	MPI tasks            : 2 2 2 2 
+Grid : Message : 1.875898 s : 	MPI tasks            : 2 2 2 2 
-Grid : Message : 1.397615 s : Making s innermost grids
+Grid : Message : 1.993571 s : Initialising 4d RNG
-Grid : Message : 1.441828 s : Initialising 4d RNG
+Grid : Message : 2.881990 s : Intialising parallel RNG with unique string 'The 4D RNG'
-Grid : Message : 1.547973 s : Intialising parallel RNG with unique string 'The 4D RNG'
+Grid : Message : 2.882370 s : Seed SHA256: 49db4542db694e3b1a74bf2592a8c1b83bfebbe18401693c2609a4c3af1
-Grid : Message : 1.547998 s : Seed SHA256: 49db4542db694e3b1a74bf2592a8c1b83bfebbe18401693c2609a4c3af1
+Grid : Message : 2.495044 s : Initialising 5d RNG
-Grid : Message : 1.954777 s : Initialising 5d RNG
+Grid : Message : 4.120900 s : Intialising parallel RNG with unique string 'The 5D RNG'
-Grid : Message : 3.633825 s : Intialising parallel RNG with unique string 'The 5D RNG'
+Grid : Message : 4.121350 s : Seed SHA256: b6316f2fac44ce14111f93e0296389330b077bfd0a7b359f781c58589f8a
-Grid : Message : 3.633869 s : Seed SHA256: b6316f2fac44ce14111f93e0296389330b077bfd0a7b359f781c58589f8a
+Grid : Message : 15.268010 s : Drawing gauge field
-Grid : Message : 12.162710 s : Initialised RNGs
+Grid : Message : 16.234025 s : Random gauge initialised 
-Grid : Message : 15.882520 s : Drawing gauge field
+Grid : Message : 16.234057 s : Applying BCs 
-Grid : Message : 15.816362 s : Random gauge initialised 
+Grid : Message : 16.365565 s : Setting up Cshift based reference 
-Grid : Message : 17.279671 s : Setting up Cshift based reference 
+Grid : Message : 44.512418 s : *****************************************************************
-Grid : Message : 26.331426 s : *****************************************************************
+Grid : Message : 44.512448 s : * Kernel options --dslash-generic, --dslash-unroll, --dslash-asm
-Grid : Message : 26.331452 s : * Kernel options --dslash-generic, --dslash-unroll, --dslash-asm
+Grid : Message : 44.512450 s : *****************************************************************
-Grid : Message : 26.331454 s : *****************************************************************
+Grid : Message : 44.512451 s : *****************************************************************
-Grid : Message : 26.331456 s : *****************************************************************
+Grid : Message : 44.512452 s : * Benchmarking DomainWallFermionR::Dhop                  
-Grid : Message : 26.331458 s : * Benchmarking DomainWallFermionR::Dhop                  
+Grid : Message : 44.512453 s : * Vectorising space-time by 8
-Grid : Message : 26.331459 s : * Vectorising space-time by 8
+Grid : Message : 44.512454 s : * VComplexF size is 64 B
-Grid : Message : 26.331463 s : * VComplexF size is 64 B
+Grid : Message : 44.512456 s : * SINGLE precision 
-Grid : Message : 26.331465 s : * SINGLE precision 
+Grid : Message : 44.512459 s : * Using Overlapped Comms/Compute
-Grid : Message : 26.331467 s : * Using Overlapped Comms/Compute
+Grid : Message : 44.512460 s : * Using GENERIC Nc WilsonKernels
-Grid : Message : 26.331468 s : * Using GENERIC Nc WilsonKernels
+Grid : Message : 44.512461 s : *****************************************************************
-Grid : Message : 26.331469 s : *****************************************************************
+Grid : Message : 46.389070 s : Called warmup
-Grid : Message : 28.413717 s : Called warmup
+Grid : Message : 49.211265 s : Called Dw 300 times in 2.82203e+06 us
-Grid : Message : 56.418423 s : Called Dw 3000 times in 2.80047e+07 us
+Grid : Message : 49.211295 s : mflop/s =   3.76681e+07
-Grid : Message : 56.418476 s : mflop/s =   3.79581e+07
+Grid : Message : 49.211297 s : mflop/s per rank =  2.35425e+06
-Grid : Message : 56.418479 s : mflop/s per rank =  2.37238e+06
+Grid : Message : 49.211299 s : mflop/s per node =  9.41702e+06
-Grid : Message : 56.418481 s : mflop/s per node =  9.48953e+06
+Grid : Message : 49.211301 s : RF  GiB/s (base 2) =   76540.6
-Grid : Message : 56.418483 s : RF  GiB/s (base 2) =   77130
+Grid : Message : 49.211308 s : mem GiB/s (base 2) =   47837.9
-Grid : Message : 56.418485 s : mem GiB/s (base 2) =   48206.3
+Grid : Message : 49.214868 s : norm diff   1.06409e-13
-Grid : Message : 56.422076 s : norm diff   1.03481e-13
+Grid : Message : 92.647781 s : Compare to naive wilson implementation Dag to verify correctness
-Grid : Message : 56.456894 s : #### Dhop calls report 
+Grid : Message : 92.647816 s : Called DwDag
-Grid : Message : 56.456899 s : WilsonFermion5D Number of DhopEO Calls   : 6002
+Grid : Message : 92.647817 s : norm dag result 12.0421
-Grid : Message : 56.456903 s : WilsonFermion5D TotalTime   /Calls        : 4710.93 us
+Grid : Message : 92.801806 s : norm dag ref    12.0421
-Grid : Message : 56.456905 s : WilsonFermion5D CommTime    /Calls        : 3196.15 us
+Grid : Message : 92.817724 s : norm dag diff   7.21921e-14
-Grid : Message : 56.456908 s : WilsonFermion5D FaceTime    /Calls        : 494.392 us
+Grid : Message : 92.858973 s : Calling Deo and Doe and //assert Deo+Doe == Dunprec
-Grid : Message : 56.456910 s : WilsonFermion5D ComputeTime1/Calls        : 44.4107 us
+Grid : Message : 93.210378 s : src_e0.499997
-Grid : Message : 56.456912 s : WilsonFermion5D ComputeTime2/Calls        : 1037.75 us
+Grid : Message : 93.583286 s : src_o0.500003
-Grid : Message : 56.456921 s : Average mflops/s per call                : 3.55691e+09
+Grid : Message : 93.682468 s : *********************************************************
-Grid : Message : 56.456925 s : Average mflops/s per call per rank       : 2.22307e+08
+Grid : Message : 93.682471 s : * Benchmarking DomainWallFermionF::DhopEO                
-Grid : Message : 56.456928 s : Average mflops/s per call per node       : 8.89228e+08
+Grid : Message : 93.682472 s : * Vectorising space-time by 8
-Grid : Message : 56.456930 s : Average mflops/s per call (full)         : 3.82915e+07
+Grid : Message : 93.682473 s : * SINGLE precision 
-Grid : Message : 56.456933 s : Average mflops/s per call per rank (full): 2.39322e+06
+Grid : Message : 93.682475 s : * Using Overlapped Comms/Compute
-Grid : Message : 56.456952 s : Average mflops/s per call per node (full): 9.57287e+06
+Grid : Message : 93.682476 s : * Using GENERIC Nc WilsonKernels
-Grid : Message : 56.456954 s : WilsonFermion5D Stencil
+Grid : Message : 93.682477 s : *********************************************************
-Grid : Message : 56.457016 s :  Stencil calls 3001
+Grid : Message : 95.162342 s : Deo mflop/s =   3.92487e+07
-Grid : Message : 56.457022 s :  Stencil halogtime 0
+Grid : Message : 95.162387 s : Deo mflop/s per rank   2.45305e+06
-Grid : Message : 56.457024 s :  Stencil gathertime 55.9154
+Grid : Message : 95.162389 s : Deo mflop/s per node   9.81219e+06
-Grid : Message : 56.457026 s :  Stencil gathermtime 20.1073
+Grid : Message : 95.232801 s : r_e6.02111
-Grid : Message : 56.457028 s :  Stencil mergetime 18.5585
+Grid : Message : 95.240061 s : r_o6.02102
-Grid : Message : 56.457030 s :  Stencil decompresstime 0.0639787
+Grid : Message : 95.245975 s : res12.0421
-Grid : Message : 56.457032 s :  Stencil comms_bytes 4.02653e+08
+Grid : Message : 95.833402 s : norm diff   0
-Grid : Message : 56.457034 s :  Stencil commtime 6379.93
+Grid : Message : 96.573829 s : norm diff even  0
-Grid : Message : 56.457036 s :  Stencil 63.1124 GB/s per rank
+Grid : Message : 96.868272 s : norm diff odd   0
-Grid : Message : 56.457038 s :  Stencil 252.45 GB/s per node
+ Dirichlet block [0 64 64 32 32]
-Grid : Message : 56.457040 s : WilsonFermion5D StencilEven
+Grid : Message : 97.756909 s : Grid Layout
-Grid : Message : 56.457048 s : WilsonFermion5D StencilOdd
+Grid : Message : 97.756911 s : 	Global lattice size  : 64 64 64 64 
-Grid : Message : 56.457062 s : WilsonFermion5D Stencil     Reporti()
+Grid : Message : 97.756921 s : 	OpenMP threads       : 4
-Grid : Message : 56.457065 s : WilsonFermion5D StencilEven Reporti()
+Grid : Message : 97.756922 s : 	MPI tasks            : 2 2 2 2 
-Grid : Message : 56.457066 s : WilsonFermion5D StencilOdd  Reporti()
+Grid : Message : 97.897085 s : Initialising 4d RNG
-Grid : Message : 79.259261 s : Compare to naive wilson implementation Dag to verify correctness
+Grid : Message : 97.965061 s : Intialising parallel RNG with unique string 'The 4D RNG'
-Grid : Message : 79.259287 s : Called DwDag
+Grid : Message : 97.965097 s : Seed SHA256: 49db4542db694e3b1a74bf2592a8c1b83bfebbe18401693c2609a4c3af1
-Grid : Message : 79.259288 s : norm dag result 12.0421
+Grid : Message : 98.367431 s : Initialising 5d RNG
-Grid : Message : 79.271740 s : norm dag ref    12.0421
+Grid : Message : 99.752745 s : Intialising parallel RNG with unique string 'The 5D RNG'
-Grid : Message : 79.287759 s : norm dag diff   7.63236e-14
+Grid : Message : 99.752790 s : Seed SHA256: b6316f2fac44ce14111f93e0296389330b077bfd0a7b359f781c58589f8a
-Grid : Message : 79.328100 s : Calling Deo and Doe and //assert Deo+Doe == Dunprec
+Grid : Message : 111.290148 s : Drawing gauge field
-Grid : Message : 79.955951 s : src_e0.499997
+Grid : Message : 112.349289 s : Random gauge initialised 
-Grid : Message : 80.633620 s : src_o0.500003
+Grid : Message : 112.349320 s : Applying BCs 
-Grid : Message : 80.164163 s : *********************************************************
+Grid : Message : 113.948740 s : Setting up Cshift based reference 
-Grid : Message : 80.164168 s : * Benchmarking DomainWallFermionF::DhopEO                
+Grid : Message : 140.320415 s : *****************************************************************
-Grid : Message : 80.164170 s : * Vectorising space-time by 8
+Grid : Message : 140.320443 s : * Kernel options --dslash-generic, --dslash-unroll, --dslash-asm
-Grid : Message : 80.164172 s : * SINGLE precision 
+Grid : Message : 140.320444 s : *****************************************************************
-Grid : Message : 80.164174 s : * Using Overlapped Comms/Compute
+Grid : Message : 140.320445 s : *****************************************************************
-Grid : Message : 80.164177 s : * Using GENERIC Nc WilsonKernels
+Grid : Message : 140.320446 s : * Benchmarking DomainWallFermionR::Dhop                  
-Grid : Message : 80.164178 s : *********************************************************
+Grid : Message : 140.320447 s : * Vectorising space-time by 8
-Grid : Message : 93.797635 s : Deo mflop/s =   3.93231e+07
+Grid : Message : 140.320448 s : * VComplexF size is 64 B
-Grid : Message : 93.797670 s : Deo mflop/s per rank   2.45769e+06
+Grid : Message : 140.320450 s : * SINGLE precision 
-Grid : Message : 93.797672 s : Deo mflop/s per node   9.83077e+06
+Grid : Message : 140.320451 s : * Using Overlapped Comms/Compute
-Grid : Message : 93.797674 s : #### Dhop calls report 
+Grid : Message : 140.320452 s : * Using GENERIC Nc WilsonKernels
-Grid : Message : 93.797675 s : WilsonFermion5D Number of DhopEO Calls   : 3001
+Grid : Message : 140.320453 s : *****************************************************************
-Grid : Message : 93.797677 s : WilsonFermion5D TotalTime   /Calls        : 4542.83 us
+Grid : Message : 142.296150 s : Called warmup
-Grid : Message : 93.797679 s : WilsonFermion5D CommTime    /Calls        : 2978.97 us
+Grid : Message : 144.397678 s : Called Dw 300 times in 2.36719e+06 us
-Grid : Message : 93.797681 s : WilsonFermion5D FaceTime    /Calls        : 602.287 us
+Grid : Message : 144.397700 s : mflop/s =   4.49058e+07
-Grid : Message : 93.797683 s : WilsonFermion5D ComputeTime1/Calls        : 67.1416 us
+Grid : Message : 144.397702 s : mflop/s per rank =  2.80661e+06
-Grid : Message : 93.797685 s : WilsonFermion5D ComputeTime2/Calls        : 1004.07 us
+Grid : Message : 144.397704 s : mflop/s per node =  1.12265e+07
-Grid : Message : 93.797713 s : Average mflops/s per call                : 3.30731e+09
+Grid : Message : 144.397706 s : RF  GiB/s (base 2) =   91247.6
-Grid : Message : 93.797717 s : Average mflops/s per call per rank       : 2.06707e+08
+Grid : Message : 144.397708 s : mem GiB/s (base 2) =   57029.7
-Grid : Message : 93.797719 s : Average mflops/s per call per node       : 8.26827e+08
+Grid : Message : 144.401269 s : norm diff   9.78944e-14
-Grid : Message : 93.797721 s : Average mflops/s per call (full)         : 3.97084e+07
+Grid : Message : 186.885460 s : Compare to naive wilson implementation Dag to verify correctness
-Grid : Message : 93.797727 s : Average mflops/s per call per rank (full): 2.48178e+06
+Grid : Message : 186.885492 s : Called DwDag
-Grid : Message : 93.797732 s : Average mflops/s per call per node (full): 9.92711e+06
+Grid : Message : 186.885493 s : norm dag result 10.4157
-Grid : Message : 93.797735 s : WilsonFermion5D Stencil
+Grid : Message : 186.897154 s : norm dag ref    11.2266
-Grid : Message : 93.797746 s : WilsonFermion5D StencilEven
+Grid : Message : 186.912538 s : norm dag diff   0.484633
-Grid : Message : 93.797758 s : WilsonFermion5D StencilOdd
-Grid : Message : 93.797769 s :  Stencil calls 3001
-Grid : Message : 93.797773 s :  Stencil halogtime 0
-Grid : Message : 93.797776 s :  Stencil gathertime 56.7458
-Grid : Message : 93.797780 s :  Stencil gathermtime 22.6504
-Grid : Message : 93.797782 s :  Stencil mergetime 21.1913
-Grid : Message : 93.797786 s :  Stencil decompresstime 0.0556481
-Grid : Message : 93.797788 s :  Stencil comms_bytes 2.01327e+08
-Grid : Message : 93.797791 s :  Stencil commtime 2989.33
-Grid : Message : 93.797795 s :  Stencil 67.3484 GB/s per rank
-Grid : Message : 93.797798 s :  Stencil 269.394 GB/s per node
-Grid : Message : 93.797801 s : WilsonFermion5D Stencil     Reporti()
-Grid : Message : 93.797803 s : WilsonFermion5D StencilEven Reporti()
-Grid : Message : 93.797805 s : WilsonFermion5D StencilOdd  Reporti()
-Grid : Message : 93.873429 s : r_e6.02111
-Grid : Message : 93.879931 s : r_o6.02102
-Grid : Message : 93.885912 s : res12.0421
-Grid : Message : 94.876555 s : norm diff   0
-Grid : Message : 95.485643 s : norm diff even  0
-Grid : Message : 95.581236 s : norm diff odd   0

systems/Tursa/dwf4.slurm

@@ -1,14 +1,13 @@
 #!/bin/bash
 #SBATCH -J dslash
-#SBATCH -A tc002
+#SBATCH -A dp207
-#SBATCH -t 2:20:00
-#SBATCH --nodelist=tu-c0r0n[00,03,06,09]
 #SBATCH --exclusive
 #SBATCH --nodes=4
 #SBATCH --ntasks=16
+#SBATCH --qos=standard
 #SBATCH --ntasks-per-node=4
 #SBATCH --cpus-per-task=8
-#SBATCH --time=12:00:00
+#SBATCH --time=0:05:00
 #SBATCH --partition=gpu
 #SBATCH --gres=gpu:4
 #SBATCH --output=%x.%j.out

tests/IO/Test_nersc_io.cc

@@ -147,7 +147,7 @@ int main (int argc, char ** argv)
   Complex p  = TensorRemove(Tp);
   std::cout<<GridLogMessage << "calculated plaquettes " <<p*PlaqScale<<std::endl;
 
-  Complex LinkTraceScale(1.0/vol/4.0/3.0);
+  Complex LinkTraceScale(1.0/vol/4.0/(Real)Nc);
   TComplex Tl = sum(LinkTrace);
   Complex l  = TensorRemove(Tl);
   std::cout<<GridLogMessage << "calculated link trace " <<l*LinkTraceScale<<std::endl;
@@ -157,8 +157,10 @@ int main (int argc, char ** argv)
   Complex ll= TensorRemove(TcP);
   std::cout<<GridLogMessage << "coarsened plaquettes sum to " <<ll*PlaqScale<<std::endl;
 
-  std::string clone2x3("./ckpoint_clone2x3.4000");
+  const string stNc   = to_string( Nc   ) ;
-  std::string clone3x3("./ckpoint_clone3x3.4000");
+  const string stNcM1 = to_string( Nc-1 ) ;
+  std::string clone2x3("./ckpoint_clone"+stNcM1+"x"+stNc+".4000");
+  std::string clone3x3("./ckpoint_clone"+stNc+"x"+stNc+".4000");
 
   NerscIO::writeConfiguration(Umu,clone3x3,0,precision32);
   NerscIO::writeConfiguration(Umu,clone2x3,1,precision32);

tests/Test_stencil.cc

@@ -31,7 +31,6 @@ Author: paboyle <paboyle@ph.ed.ac.uk>
 
 using namespace std;
 using namespace Grid;
- ;
 
 int main(int argc, char ** argv) {
   Grid_init(&argc, &argv);
@@ -80,7 +79,8 @@ int main(int argc, char ** argv) {
     Foo=lex;
   }
 
-  typedef CartesianStencil<vobj,vobj,int> Stencil;
+  typedef CartesianStencil<vobj,vobj,SimpleStencilParams> Stencil;
+  SimpleStencilParams p;
     for(int dir=0;dir<4;dir++){
       for(int disp=0;disp<Fine._fdimensions[dir];disp++){
 
@@ -90,7 +90,7 @@ int main(int argc, char ** argv) {
 	std::vector<int> directions(npoint,dir);
 	std::vector<int> displacements(npoint,disp);
 
-	Stencil myStencil(&Fine,npoint,0,directions,displacements,0);
+	Stencil myStencil(&Fine,npoint,0,directions,displacements,p);
 	Coordinate ocoor(4);
 	for(int o=0;o<Fine.oSites();o++){
 	  Fine.oCoorFromOindex(ocoor,o);
@@ -183,8 +183,8 @@ int main(int argc, char ** argv) {
 	std::vector<int> directions(npoint,dir);
 	std::vector<int> displacements(npoint,disp);
 
-	Stencil EStencil(&rbFine,npoint,Even,directions,displacements,0);
+	Stencil EStencil(&rbFine,npoint,Even,directions,displacements,p);
-	Stencil OStencil(&rbFine,npoint,Odd,directions,displacements,0);
+	Stencil OStencil(&rbFine,npoint,Odd,directions,displacements,p);
 
 	Coordinate ocoor(4);
 	for(int o=0;o<Fine.oSites();o++){

tests/core/Test_compact_wilson_clover_speedup.cc

@@ -117,8 +117,8 @@ void runBenchmark(int* argc, char*** argv) {
 
   // type definitions
   typedef WilsonImpl<vCoeff_t, FundamentalRepresentation, CoeffReal> WImpl;
-  typedef WilsonCloverFermion<WImpl> WilsonCloverOperator;
+  typedef WilsonCloverFermion<WImpl, CloverHelpers<WImpl>> WilsonCloverOperator;
-  typedef CompactWilsonCloverFermion<WImpl> CompactWilsonCloverOperator;
+  typedef CompactWilsonCloverFermion<WImpl, CompactCloverHelpers<WImpl>> CompactWilsonCloverOperator;
   typedef typename WilsonCloverOperator::FermionField Fermion;
   typedef typename WilsonCloverOperator::GaugeField Gauge;
 

tests/core/Test_lie_generators.cc

@@ -9,6 +9,7 @@ Copyright (C) 2015
 Author: Azusa Yamaguchi <ayamaguc@staffmail.ed.ac.uk>
 Author: Peter Boyle <paboyle@ph.ed.ac.uk>
 Author: Guido Cossu <guido.cossu@ed.ac.uk>
+Author: Jamie Hudspith <renwick.james.hudspth@gmail.com>
 
 This program is free software; you can redistribute it and/or modify
 it under the terms of the GNU General Public License as published by
@@ -42,14 +43,14 @@ directory
 
 using namespace std;
 using namespace Grid;
- ;
+;
 
 int main(int argc, char** argv) {
   Grid_init(&argc, &argv);
 
   std::vector<int> latt({4, 4, 4, 8});
   GridCartesian* grid = SpaceTimeGrid::makeFourDimGrid(
-      latt, GridDefaultSimd(Nd, vComplex::Nsimd()), GridDefaultMpi());
+						       latt, GridDefaultSimd(Nd, vComplex::Nsimd()), GridDefaultMpi());
 
   GridRedBlackCartesian* rbGrid = SpaceTimeGrid::makeFourDimRedBlackGrid(grid);
 
@@ -60,15 +61,19 @@ int main(int argc, char** argv) {
             << std::endl;
   SU2::printGenerators();
   std::cout << "Dimension of adjoint representation: "<< SU2Adjoint::Dimension << std::endl;
+
+  // guard as this code fails to compile for Nc != 3
+#if (Nc == 3)
+    
   SU2Adjoint::printGenerators();
   SU2::testGenerators();
   SU2Adjoint::testGenerators();
-
+    
   std::cout << GridLogMessage << "*********************************************"
-            << std::endl;
+	    << std::endl;
   std::cout << GridLogMessage << "* Generators for SU(Nc" << std::endl;
   std::cout << GridLogMessage << "*********************************************"
-            << std::endl;
+	    << std::endl;
   SU3::printGenerators();
   std::cout << "Dimension of adjoint representation: "<< SU3Adjoint::Dimension << std::endl;
   SU3Adjoint::printGenerators();
@@ -111,12 +116,10 @@ int main(int argc, char** argv) {
 
   // AdjointRepresentation has the predefined number of colours Nc
   //  Representations<FundamentalRepresentation, AdjointRepresentation, TwoIndexSymmetricRepresentation> RepresentationTypes(grid);  
-
-  
   LatticeGaugeField U(grid), V(grid);
   SU3::HotConfiguration<LatticeGaugeField>(gridRNG, U);
   SU3::HotConfiguration<LatticeGaugeField>(gridRNG, V);
-
+    
   // Adjoint representation
   // Test group structure
   // (U_f * V_f)_r = U_r * V_r
@@ -127,17 +130,17 @@ int main(int argc, char** argv) {
     SU3::LatticeMatrix Vmu = peekLorentz(V,mu);
     pokeLorentz(UV,Umu*Vmu, mu);
   }
-
+    
   AdjRep.update_representation(UV);
   typename AdjointRep<Nc>::LatticeField UVr = AdjRep.U;  // (U_f * V_f)_r 
-
+    
-
+    
   AdjRep.update_representation(U);
   typename AdjointRep<Nc>::LatticeField Ur = AdjRep.U;  // U_r
-
+    
   AdjRep.update_representation(V);
   typename AdjointRep<Nc>::LatticeField Vr = AdjRep.U;  // V_r
-
+    
   typename AdjointRep<Nc>::LatticeField UrVr(grid);
   UrVr = Zero();
   for (int mu = 0; mu < Nd; mu++) {
@@ -145,10 +148,10 @@ int main(int argc, char** argv) {
     typename AdjointRep<Nc>::LatticeMatrix Vrmu = peekLorentz(Vr,mu);
     pokeLorentz(UrVr,Urmu*Vrmu, mu);
   }
-
+    
   typename AdjointRep<Nc>::LatticeField Diff_check = UVr - UrVr;
   std::cout << GridLogMessage << "Group structure SU("<<Nc<<") check difference (Adjoint representation) : " << norm2(Diff_check) << std::endl;
-
+    
   // Check correspondence of algebra and group transformations
   // Create a random vector
   SU3::LatticeAlgebraVector h_adj(grid);
@@ -156,32 +159,31 @@ int main(int argc, char** argv) {
   random(gridRNG,h_adj);
   h_adj = real(h_adj);
   SU_Adjoint<Nc>::AdjointLieAlgebraMatrix(h_adj,Ar);
-
+    
   // Re-extract h_adj
   SU3::LatticeAlgebraVector h_adj2(grid);
   SU_Adjoint<Nc>::projectOnAlgebra(h_adj2, Ar);
   SU3::LatticeAlgebraVector h_diff = h_adj - h_adj2;
   std::cout << GridLogMessage << "Projections structure check vector difference (Adjoint representation) : " << norm2(h_diff) << std::endl;
-
+    
   // Exponentiate
   typename AdjointRep<Nc>::LatticeMatrix Uadj(grid);
   Uadj  = expMat(Ar, 1.0, 16);
-
+    
   typename AdjointRep<Nc>::LatticeMatrix uno(grid);
   uno = 1.0;
   // Check matrix Uadj, must be real orthogonal
   typename AdjointRep<Nc>::LatticeMatrix Ucheck = Uadj - conjugate(Uadj);
   std::cout << GridLogMessage << "Reality check: " << norm2(Ucheck)
-            << std::endl;
+	    << std::endl;
-
+    
   Ucheck = Uadj * adj(Uadj) - uno;
   std::cout << GridLogMessage << "orthogonality check 1: " << norm2(Ucheck)
-            << std::endl;
+	    << std::endl;
   Ucheck = adj(Uadj) * Uadj - uno;
   std::cout << GridLogMessage << "orthogonality check 2: " << norm2(Ucheck)
-            << std::endl;
+	    << std::endl;
-      
+    
-
   // Construct the fundamental matrix in the group
   SU3::LatticeMatrix Af(grid);
   SU3::FundamentalLieAlgebraMatrix(h_adj,Af);
@@ -193,72 +195,65 @@ int main(int argc, char** argv) {
   SU3::LatticeMatrix UnitCheck(grid);
   UnitCheck = Ufund * adj(Ufund) - uno_f;
   std::cout << GridLogMessage << "unitarity check 1: " << norm2(UnitCheck)
-            << std::endl;
+	    << std::endl;
   UnitCheck = adj(Ufund) * Ufund - uno_f;
   std::cout << GridLogMessage << "unitarity check 2: " << norm2(UnitCheck)
-            << std::endl;
+	    << std::endl;
-
 
   // Tranform to the adjoint representation
   U = Zero(); // fill this with only one direction
   pokeLorentz(U,Ufund,0); // the representation transf acts on full gauge fields
-
+    
   AdjRep.update_representation(U);
   Ur = AdjRep.U;  // U_r  
   typename AdjointRep<Nc>::LatticeMatrix Ur0 = peekLorentz(Ur,0); // this should be the same as Uadj
-
+    
   typename AdjointRep<Nc>::LatticeMatrix Diff_check_mat = Ur0 - Uadj;
   std::cout << GridLogMessage << "Projections structure check group difference : " << norm2(Diff_check_mat) << std::endl;
 
-
-
-
   // TwoIndexRep tests
-
   std::cout << GridLogMessage << "*********************************************"
-            << std::endl;
+	    << std::endl;
   std::cout << GridLogMessage << "*********************************************"
-            << std::endl;
+	    << std::endl;
 
 
   
   std::cout << GridLogMessage << "* eS^{ij} base for SU(2)" << std::endl;
   std::cout << GridLogMessage << "*********************************************"
-            << std::endl;
+	    << std::endl;
   std::cout << GridLogMessage << "Dimension of Two Index Symmetric representation: "<< SU2TwoIndexSymm::Dimension << std::endl;
   SU2TwoIndexSymm::printBase();
-      std::cout << GridLogMessage << "*********************************************"
+  std::cout << GridLogMessage << "*********************************************"
-            << std::endl;
+	    << std::endl;
-        std::cout << GridLogMessage << "Generators of Two Index Symmetric representation: "<< SU2TwoIndexSymm::Dimension << std::endl;
+  std::cout << GridLogMessage << "Generators of Two Index Symmetric representation: "<< SU2TwoIndexSymm::Dimension << std::endl;
   SU2TwoIndexSymm::printGenerators();
-        std::cout << GridLogMessage << "Test of Two Index Symmetric Generators: "<< SU2TwoIndexSymm::Dimension << std::endl;
+  std::cout << GridLogMessage << "Test of Two Index Symmetric Generators: "<< SU2TwoIndexSymm::Dimension << std::endl;
   SU2TwoIndexSymm::testGenerators();
   std::cout << GridLogMessage << "*********************************************"
-            << std::endl;
+	    << std::endl;
 
 
   
   std::cout << GridLogMessage << "*********************************************"
-            << std::endl;
+	    << std::endl;
   std::cout << GridLogMessage << "* eAS^{ij} base for SU(2)" << std::endl;
   
   std::cout << GridLogMessage << "*********************************************"
-            << std::endl;
+	    << std::endl;
   std::cout << GridLogMessage << "Dimension of Two Index anti-Symmetric representation: "<< SU2TwoIndexAntiSymm::Dimension << std::endl;
   SU2TwoIndexAntiSymm::printBase();
-      std::cout << GridLogMessage << "*********************************************"
+  std::cout << GridLogMessage << "*********************************************"
-            << std::endl;
+	    << std::endl;
-        std::cout << GridLogMessage << "Dimension of Two Index anti-Symmetric representation: "<< SU2TwoIndexAntiSymm::Dimension << std::endl;
+  std::cout << GridLogMessage << "Dimension of Two Index anti-Symmetric representation: "<< SU2TwoIndexAntiSymm::Dimension << std::endl;
   SU2TwoIndexAntiSymm::printGenerators();
   std::cout << GridLogMessage << "Test of Two Index anti-Symmetric Generators: "<< SU2TwoIndexAntiSymm::Dimension << std::endl;
   SU2TwoIndexAntiSymm::testGenerators();
   
-  
-  
   std::cout << GridLogMessage << "*********************************************"
-      << std::endl;
+	    << std::endl;
   std::cout << GridLogMessage << "Test for the Two Index Symmetric projectors"
-      << std::endl;
+	    << std::endl;
   // Projectors 
   SU3TwoIndexSymm::LatticeTwoIndexMatrix Gauss2(grid);
   random(gridRNG,Gauss2);
@@ -276,13 +271,13 @@ int main(int argc, char** argv) {
   SU3::LatticeAlgebraVector diff2 = ha - hb;
   std::cout << GridLogMessage << "Difference: " << norm2(diff) << std::endl;
   std::cout << GridLogMessage << "*********************************************"
-      << std::endl;
+	    << std::endl;
 
   
-    std::cout << GridLogMessage << "*********************************************"
+  std::cout << GridLogMessage << "*********************************************"
-      << std::endl;
+	    << std::endl;
   std::cout << GridLogMessage << "Test for the Two index anti-Symmetric projectors"
-      << std::endl;
+	    << std::endl;
   // Projectors
   SU3TwoIndexAntiSymm::LatticeTwoIndexMatrix Gauss2a(grid);
   random(gridRNG,Gauss2a);
@@ -300,11 +295,11 @@ int main(int argc, char** argv) {
   SU3::LatticeAlgebraVector diff2a = ha - hb;
   std::cout << GridLogMessage << "Difference: " << norm2(diff2a) << std::endl;
   std::cout << GridLogMessage << "*********************************************"
-      << std::endl;
+	    << std::endl;
     
   
   std::cout << GridLogMessage << "Two index Symmetric: Checking Group Structure"
-      << std::endl;
+	    << std::endl;
   // Testing HMC representation classes
   TwoIndexRep< Nc, Symmetric > TIndexRep(grid);
 
@@ -313,7 +308,7 @@ int main(int argc, char** argv) {
   LatticeGaugeField U2(grid), V2(grid);
   SU3::HotConfiguration<LatticeGaugeField>(gridRNG, U2);
   SU3::HotConfiguration<LatticeGaugeField>(gridRNG, V2);
-  
+    
   LatticeGaugeField UV2(grid);
   UV2 = Zero();
   for (int mu = 0; mu < Nd; mu++) {
@@ -321,16 +316,16 @@ int main(int argc, char** argv) {
     SU3::LatticeMatrix Vmu2 = peekLorentz(V2,mu);
     pokeLorentz(UV2,Umu2*Vmu2, mu);
   }
-  
+    
   TIndexRep.update_representation(UV2);
   typename TwoIndexRep< Nc, Symmetric >::LatticeField UVr2 = TIndexRep.U;  // (U_f * V_f)_r
-  
+    
   TIndexRep.update_representation(U2);
   typename TwoIndexRep< Nc, Symmetric >::LatticeField Ur2 = TIndexRep.U;  // U_r
-  
+    
   TIndexRep.update_representation(V2);
   typename TwoIndexRep< Nc, Symmetric >::LatticeField Vr2 = TIndexRep.U;  // V_r
-  
+    
   typename TwoIndexRep< Nc, Symmetric >::LatticeField Ur2Vr2(grid);
   Ur2Vr2 = Zero();
   for (int mu = 0; mu < Nd; mu++) {
@@ -338,11 +333,11 @@ int main(int argc, char** argv) {
     typename TwoIndexRep< Nc, Symmetric >::LatticeMatrix Vrmu2 = peekLorentz(Vr2,mu);
     pokeLorentz(Ur2Vr2,Urmu2*Vrmu2, mu);
   }
-  
+    
   typename TwoIndexRep< Nc, Symmetric >::LatticeField Diff_check2 = UVr2 - Ur2Vr2;
   std::cout << GridLogMessage << "Group structure SU("<<Nc<<") check difference (Two Index Symmetric): " << norm2(Diff_check2) << std::endl;
-
+    
-  
+    
   // Check correspondence of algebra and group transformations
   // Create a random vector
   SU3::LatticeAlgebraVector h_sym(grid);
@@ -350,34 +345,31 @@ int main(int argc, char** argv) {
   random(gridRNG,h_sym);
   h_sym = real(h_sym);
   SU_TwoIndex<Nc,Symmetric>::TwoIndexLieAlgebraMatrix(h_sym,Ar_sym);
-  
+    
   // Re-extract h_sym
   SU3::LatticeAlgebraVector h_sym2(grid);
   SU_TwoIndex< Nc, Symmetric>::projectOnAlgebra(h_sym2, Ar_sym);
   SU3::LatticeAlgebraVector h_diff_sym = h_sym - h_sym2;
   std::cout << GridLogMessage << "Projections structure check vector difference (Two Index Symmetric): " << norm2(h_diff_sym) << std::endl;
-
+    
-  
   // Exponentiate
   typename TwoIndexRep< Nc, Symmetric>::LatticeMatrix U2iS(grid);
   U2iS  = expMat(Ar_sym, 1.0, 16);
-  
+    
   typename TwoIndexRep< Nc, Symmetric>::LatticeMatrix uno2iS(grid);
   uno2iS = 1.0;
   // Check matrix U2iS, must be real orthogonal
   typename TwoIndexRep< Nc, Symmetric>::LatticeMatrix Ucheck2iS = U2iS - conjugate(U2iS);
   std::cout << GridLogMessage << "Reality check: " << norm2(Ucheck2iS)
-      << std::endl;
+	    << std::endl;
-  
+    
   Ucheck2iS = U2iS * adj(U2iS) - uno2iS;
   std::cout << GridLogMessage << "orthogonality check 1: " << norm2(Ucheck2iS)
-      << std::endl;
+	    << std::endl;
   Ucheck2iS = adj(U2iS) * U2iS - uno2iS;
   std::cout << GridLogMessage << "orthogonality check 2: " << norm2(Ucheck2iS)
-      << std::endl;
+	    << std::endl;
-  
+    
-  
-  
   // Construct the fundamental matrix in the group
   SU3::LatticeMatrix Af_sym(grid);
   SU3::FundamentalLieAlgebraMatrix(h_sym,Af_sym);
@@ -386,147 +378,137 @@ int main(int argc, char** argv) {
   SU3::LatticeMatrix UnitCheck2(grid);
   UnitCheck2 = Ufund2 * adj(Ufund2) - uno_f;
   std::cout << GridLogMessage << "unitarity check 1: " << norm2(UnitCheck2)
-      << std::endl;
+	    << std::endl;
   UnitCheck2 = adj(Ufund2) * Ufund2 - uno_f;
   std::cout << GridLogMessage << "unitarity check 2: " << norm2(UnitCheck2)
-      << std::endl;
+	    << std::endl;
-  
+    
-
+    
   // Tranform to the 2Index Sym representation
   U = Zero(); // fill this with only one direction
   pokeLorentz(U,Ufund2,0); // the representation transf acts on full gauge fields
-  
+    
   TIndexRep.update_representation(U);
   Ur2 = TIndexRep.U;  // U_r  
   typename TwoIndexRep< Nc, Symmetric>::LatticeMatrix Ur02 = peekLorentz(Ur2,0); // this should be the same as U2iS
-  
+    
   typename TwoIndexRep< Nc, Symmetric>::LatticeMatrix Diff_check_mat2 = Ur02 - U2iS;
   std::cout << GridLogMessage << "Projections structure check group difference (Two Index Symmetric): " << norm2(Diff_check_mat2) << std::endl;
-  
+    
-
-
-
   if (TwoIndexRep<Nc, AntiSymmetric >::Dimension != 1){
 
-  std::cout << GridLogMessage << "*********************************************"
+    std::cout << GridLogMessage << "*********************************************"
-      << std::endl;
+	      << std::endl;
     
   
-  std::cout << GridLogMessage << "Two Index anti-Symmetric: Check Group Structure"
+    std::cout << GridLogMessage << "Two Index anti-Symmetric: Check Group Structure"
-      << std::endl;
+	      << std::endl;
-  // Testing HMC representation classes
+    // Testing HMC representation classes
-  TwoIndexRep< Nc, AntiSymmetric > TIndexRepA(grid);
+    TwoIndexRep< Nc, AntiSymmetric > TIndexRepA(grid);
 
 
-  // Test group structure
+    // Test group structure
-  // (U_f * V_f)_r = U_r * V_r
+    // (U_f * V_f)_r = U_r * V_r
-  LatticeGaugeField U2A(grid), V2A(grid);
+    LatticeGaugeField U2A(grid), V2A(grid);
-  SU3::HotConfiguration<LatticeGaugeField>(gridRNG, U2A);
+    SU3::HotConfiguration<LatticeGaugeField>(gridRNG, U2A);
-  SU3::HotConfiguration<LatticeGaugeField>(gridRNG, V2A);
+    SU3::HotConfiguration<LatticeGaugeField>(gridRNG, V2A);
   
-  LatticeGaugeField UV2A(grid);
+    LatticeGaugeField UV2A(grid);
-  UV2A = Zero();
+    UV2A = Zero();
-  for (int mu = 0; mu < Nd; mu++) {
+    for (int mu = 0; mu < Nd; mu++) {
-    SU3::LatticeMatrix Umu2A = peekLorentz(U2,mu);
+      SU3::LatticeMatrix Umu2A = peekLorentz(U2,mu);
-    SU3::LatticeMatrix Vmu2A = peekLorentz(V2,mu);
+      SU3::LatticeMatrix Vmu2A = peekLorentz(V2,mu);
-    pokeLorentz(UV2A,Umu2A*Vmu2A, mu);
+      pokeLorentz(UV2A,Umu2A*Vmu2A, mu);
+    }
+  
+    TIndexRep.update_representation(UV2A);
+    typename TwoIndexRep< Nc, AntiSymmetric >::LatticeField UVr2A = TIndexRepA.U;  // (U_f * V_f)_r
+  
+    TIndexRep.update_representation(U2A);
+    typename TwoIndexRep< Nc, AntiSymmetric >::LatticeField Ur2A = TIndexRepA.U;  // U_r
+  
+    TIndexRep.update_representation(V2A);
+    typename TwoIndexRep< Nc, AntiSymmetric >::LatticeField Vr2A = TIndexRepA.U;  // V_r
+  
+    typename TwoIndexRep< Nc, AntiSymmetric >::LatticeField Ur2Vr2A(grid);
+    Ur2Vr2A = Zero();
+    for (int mu = 0; mu < Nd; mu++) {
+      typename TwoIndexRep< Nc, AntiSymmetric >::LatticeMatrix Urmu2A = peekLorentz(Ur2A,mu);
+      typename TwoIndexRep< Nc, AntiSymmetric >::LatticeMatrix Vrmu2A = peekLorentz(Vr2A,mu);
+      pokeLorentz(Ur2Vr2A,Urmu2A*Vrmu2A, mu);
+    }
+  
+    typename TwoIndexRep< Nc, AntiSymmetric >::LatticeField Diff_check2A = UVr2A - Ur2Vr2A;
+    std::cout << GridLogMessage << "Group structure SU("<<Nc<<") check difference (Two Index anti-Symmetric): " << norm2(Diff_check2A) << std::endl;
+
+  
+    // Check correspondence of algebra and group transformations
+    // Create a random vector
+    SU3::LatticeAlgebraVector h_Asym(grid);
+    typename TwoIndexRep< Nc, AntiSymmetric>::LatticeMatrix Ar_Asym(grid);
+    random(gridRNG,h_Asym);
+    h_Asym = real(h_Asym);
+    SU_TwoIndex< Nc, AntiSymmetric>::TwoIndexLieAlgebraMatrix(h_Asym,Ar_Asym);
+  
+    // Re-extract h_sym
+    SU3::LatticeAlgebraVector h_Asym2(grid);
+    SU_TwoIndex< Nc, AntiSymmetric>::projectOnAlgebra(h_Asym2, Ar_Asym);
+    SU3::LatticeAlgebraVector h_diff_Asym = h_Asym - h_Asym2;
+    std::cout << GridLogMessage << "Projections structure check vector difference (Two Index anti-Symmetric): " << norm2(h_diff_Asym) << std::endl;
+
+  
+    // Exponentiate
+    typename TwoIndexRep< Nc, AntiSymmetric>::LatticeMatrix U2iAS(grid);
+    U2iAS  = expMat(Ar_Asym, 1.0, 16);
+  
+    typename TwoIndexRep< Nc, AntiSymmetric>::LatticeMatrix uno2iAS(grid);
+    uno2iAS = 1.0;
+    // Check matrix U2iS, must be real orthogonal
+    typename TwoIndexRep< Nc, AntiSymmetric>::LatticeMatrix Ucheck2iAS = U2iAS - conjugate(U2iAS);
+    std::cout << GridLogMessage << "Reality check: " << norm2(Ucheck2iAS)
+	      << std::endl;
+  
+    Ucheck2iAS = U2iAS * adj(U2iAS) - uno2iAS;
+    std::cout << GridLogMessage << "orthogonality check 1: " << norm2(Ucheck2iAS)
+	      << std::endl;
+    Ucheck2iAS = adj(U2iAS) * U2iAS - uno2iAS;
+    std::cout << GridLogMessage << "orthogonality check 2: " << norm2(Ucheck2iAS)
+	      << std::endl;
+  
+  
+  
+    // Construct the fundamental matrix in the group
+    SU3::LatticeMatrix Af_Asym(grid);
+    SU3::FundamentalLieAlgebraMatrix(h_Asym,Af_Asym);
+    SU3::LatticeMatrix Ufund2A(grid);
+    Ufund2A  = expMat(Af_Asym, 1.0, 16);
+    SU3::LatticeMatrix UnitCheck2A(grid);
+    UnitCheck2A = Ufund2A * adj(Ufund2A) - uno_f;
+    std::cout << GridLogMessage << "unitarity check 1: " << norm2(UnitCheck2A)
+	      << std::endl;
+    UnitCheck2A = adj(Ufund2A) * Ufund2A - uno_f;
+    std::cout << GridLogMessage << "unitarity check 2: " << norm2(UnitCheck2A)
+	      << std::endl;
+  
+
+    // Tranform to the 2Index Sym representation
+    U = Zero(); // fill this with only one direction
+    pokeLorentz(U,Ufund2A,0); // the representation transf acts on full gauge fields
+  
+    TIndexRepA.update_representation(U);
+    Ur2A = TIndexRepA.U;  // U_r  
+    typename TwoIndexRep< Nc, AntiSymmetric>::LatticeMatrix Ur02A = peekLorentz(Ur2A,0); // this should be the same as U2iS
+  
+    typename TwoIndexRep< Nc, AntiSymmetric>::LatticeMatrix Diff_check_mat2A = Ur02A - U2iAS;
+    std::cout << GridLogMessage << "Projections structure check group difference (Two Index anti-Symmetric): " << norm2(Diff_check_mat2A) << std::endl;
+  
+  } else  {
+    std::cout << GridLogMessage << "Skipping Two Index anti-Symmetric tests "
+      "because representation is trivial (dim = 1)"
+	      << std::endl;
   }
-  
-  TIndexRep.update_representation(UV2A);
-  typename TwoIndexRep< Nc, AntiSymmetric >::LatticeField UVr2A = TIndexRepA.U;  // (U_f * V_f)_r
-  
-  TIndexRep.update_representation(U2A);
-  typename TwoIndexRep< Nc, AntiSymmetric >::LatticeField Ur2A = TIndexRepA.U;  // U_r
-  
-  TIndexRep.update_representation(V2A);
-  typename TwoIndexRep< Nc, AntiSymmetric >::LatticeField Vr2A = TIndexRepA.U;  // V_r
-  
-  typename TwoIndexRep< Nc, AntiSymmetric >::LatticeField Ur2Vr2A(grid);
-  Ur2Vr2A = Zero();
-  for (int mu = 0; mu < Nd; mu++) {
-    typename TwoIndexRep< Nc, AntiSymmetric >::LatticeMatrix Urmu2A = peekLorentz(Ur2A,mu);
-    typename TwoIndexRep< Nc, AntiSymmetric >::LatticeMatrix Vrmu2A = peekLorentz(Vr2A,mu);
-    pokeLorentz(Ur2Vr2A,Urmu2A*Vrmu2A, mu);
-  }
-  
-  typename TwoIndexRep< Nc, AntiSymmetric >::LatticeField Diff_check2A = UVr2A - Ur2Vr2A;
-  std::cout << GridLogMessage << "Group structure SU("<<Nc<<") check difference (Two Index anti-Symmetric): " << norm2(Diff_check2A) << std::endl;
-
-  
-  // Check correspondence of algebra and group transformations
-  // Create a random vector
-  SU3::LatticeAlgebraVector h_Asym(grid);
-  typename TwoIndexRep< Nc, AntiSymmetric>::LatticeMatrix Ar_Asym(grid);
-  random(gridRNG,h_Asym);
-  h_Asym = real(h_Asym);
-  SU_TwoIndex< Nc, AntiSymmetric>::TwoIndexLieAlgebraMatrix(h_Asym,Ar_Asym);
-  
-  // Re-extract h_sym
-  SU3::LatticeAlgebraVector h_Asym2(grid);
-  SU_TwoIndex< Nc, AntiSymmetric>::projectOnAlgebra(h_Asym2, Ar_Asym);
-  SU3::LatticeAlgebraVector h_diff_Asym = h_Asym - h_Asym2;
-  std::cout << GridLogMessage << "Projections structure check vector difference (Two Index anti-Symmetric): " << norm2(h_diff_Asym) << std::endl;
-
-  
-  // Exponentiate
-  typename TwoIndexRep< Nc, AntiSymmetric>::LatticeMatrix U2iAS(grid);
-  U2iAS  = expMat(Ar_Asym, 1.0, 16);
-  
-  typename TwoIndexRep< Nc, AntiSymmetric>::LatticeMatrix uno2iAS(grid);
-  uno2iAS = 1.0;
-  // Check matrix U2iS, must be real orthogonal
-  typename TwoIndexRep< Nc, AntiSymmetric>::LatticeMatrix Ucheck2iAS = U2iAS - conjugate(U2iAS);
-  std::cout << GridLogMessage << "Reality check: " << norm2(Ucheck2iAS)
-      << std::endl;
-  
-  Ucheck2iAS = U2iAS * adj(U2iAS) - uno2iAS;
-  std::cout << GridLogMessage << "orthogonality check 1: " << norm2(Ucheck2iAS)
-      << std::endl;
-  Ucheck2iAS = adj(U2iAS) * U2iAS - uno2iAS;
-  std::cout << GridLogMessage << "orthogonality check 2: " << norm2(Ucheck2iAS)
-      << std::endl;
-  
-  
-  
-  // Construct the fundamental matrix in the group
-  SU3::LatticeMatrix Af_Asym(grid);
-  SU3::FundamentalLieAlgebraMatrix(h_Asym,Af_Asym);
-  SU3::LatticeMatrix Ufund2A(grid);
-  Ufund2A  = expMat(Af_Asym, 1.0, 16);
-  SU3::LatticeMatrix UnitCheck2A(grid);
-  UnitCheck2A = Ufund2A * adj(Ufund2A) - uno_f;
-  std::cout << GridLogMessage << "unitarity check 1: " << norm2(UnitCheck2A)
-      << std::endl;
-  UnitCheck2A = adj(Ufund2A) * Ufund2A - uno_f;
-  std::cout << GridLogMessage << "unitarity check 2: " << norm2(UnitCheck2A)
-      << std::endl;
-  
-
-  // Tranform to the 2Index Sym representation
-  U = Zero(); // fill this with only one direction
-  pokeLorentz(U,Ufund2A,0); // the representation transf acts on full gauge fields
-  
-  TIndexRepA.update_representation(U);
-  Ur2A = TIndexRepA.U;  // U_r  
-  typename TwoIndexRep< Nc, AntiSymmetric>::LatticeMatrix Ur02A = peekLorentz(Ur2A,0); // this should be the same as U2iS
-  
-  typename TwoIndexRep< Nc, AntiSymmetric>::LatticeMatrix Diff_check_mat2A = Ur02A - U2iAS;
-  std::cout << GridLogMessage << "Projections structure check group difference (Two Index anti-Symmetric): " << norm2(Diff_check_mat2A) << std::endl;
-  
-} else  {
-  std::cout << GridLogMessage << "Skipping Two Index anti-Symmetric tests "
-                                 "because representation is trivial (dim = 1)"
-            << std::endl;
-}
-
-
-
-
-
-
-
-
 
+#endif
   
   Grid_finalize();
 }

tests/core/Test_reunitarise.cc

@@ -122,14 +122,15 @@ int main (int argc, char ** argv)
   std::cout << "Determinant defect before projection " <<norm2(detU)<<std::endl;
   tmp = U*adj(U) - ident;
   std::cout << "Unitarity check before projection    " << norm2(tmp)<<std::endl; 
-  
+#if (Nc == 3)
   ProjectSU3(U);
   detU= Determinant(U) ;
   detU= detU -1.0;
   std::cout << "Determinant ProjectSU3 defect " <<norm2(detU)<<std::endl;
   tmp = U*adj(U) - ident;
   std::cout << "Unitarity check after projection    " << norm2(tmp)<<std::endl; 
-
+#endif
+  
   ProjectSUn(UU);
   detUU= Determinant(UU);
   detUU= detUU -1.0;

tests/core/Test_wilson_clover.cc

@@ -2,11 +2,12 @@
 
     Grid physics library, www.github.com/paboyle/Grid 
 
-    Source file: ./benchmarks/Benchmark_wilson.cc
+    Source file: ./tests/core/Test_wilson_clover.cc
 
     Copyright (C) 2015
 
     Author: Guido Cossu <guido.cossu@ed.ac.uk>
+            Fabian Joswig <fabian.joswig@ed.ac.uk>
 
     This program is free software; you can redistribute it and/or modify
     it under the terms of the GNU General Public License as published by
@@ -67,8 +68,6 @@ int main(int argc, char **argv)
   tmp = Zero();
   FermionField err(&Grid);
   err = Zero();
-  FermionField err2(&Grid);
-  err2 = Zero();
   FermionField phi(&Grid);
   random(pRNG, phi);
   FermionField chi(&Grid);
@@ -77,6 +76,8 @@ int main(int argc, char **argv)
   SU<Nc>::HotConfiguration(pRNG, Umu);
   std::vector<LatticeColourMatrix> U(4, &Grid);
 
+  double tolerance = 1e-4;
+
   double volume = 1;
   for (int mu = 0; mu < Nd; mu++)
   {
@@ -88,7 +89,7 @@ int main(int argc, char **argv)
   RealD csw_t = 1.0;
 
   WilsonCloverFermionR Dwc(Umu, Grid, RBGrid, mass, csw_r, csw_t, anis, params);
-  //Dwc.ImportGauge(Umu); // not necessary, included in the constructor
+  CompactWilsonCloverFermionR Dwc_compact(Umu, Grid, RBGrid, mass, csw_r, csw_t, 1.0, anis, params);
 
   std::cout << GridLogMessage << "==========================================================" << std::endl;
   std::cout << GridLogMessage << "= Testing that Deo + Doe = Dunprec " << std::endl;
@@ -112,7 +113,24 @@ int main(int argc, char **argv)
   setCheckerboard(r_eo, r_e);
 
   err = ref - r_eo;
-  std::cout << GridLogMessage << "EO norm diff   " << norm2(err) << " " << norm2(ref) << " " << norm2(r_eo) << std::endl;
+  std::cout << GridLogMessage << "EO norm diff\t" << norm2(err) << " (" << norm2(ref) << " - " << norm2(r_eo) << ")" << std::endl;
+  assert(fabs(norm2(err)) < tolerance);
+
+
+
+  Dwc_compact.Meooe(src_e, r_o);
+  std::cout << GridLogMessage << "Applied Meo" << std::endl;
+  Dwc_compact.Meooe(src_o, r_e);
+  std::cout << GridLogMessage << "Applied Moe" << std::endl;
+  Dwc_compact.Dhop(src, ref, DaggerNo);
+
+  setCheckerboard(r_eo, r_o);
+  setCheckerboard(r_eo, r_e);
+
+  err = ref - r_eo;
+  std::cout << GridLogMessage << "EO norm diff compact\t" << norm2(err) << " (" << norm2(ref) << " - " << norm2(r_eo) << ")" << std::endl;
+  assert(fabs(norm2(err)) < tolerance);
+
 
   std::cout << GridLogMessage << "==============================================================" << std::endl;
   std::cout << GridLogMessage << "= Test Ddagger is the dagger of D by requiring                " << std::endl;
@@ -152,6 +170,22 @@ int main(int argc, char **argv)
   std::cout << GridLogMessage << "pDce - conj(cDpo) " << pDce - conj(cDpo) << std::endl;
   std::cout << GridLogMessage << "pDco - conj(cDpe) " << pDco - conj(cDpe) << std::endl;
 
+  Dwc_compact.Meooe(chi_e, dchi_o);
+  Dwc_compact.Meooe(chi_o, dchi_e);
+  Dwc_compact.MeooeDag(phi_e, dphi_o);
+  Dwc_compact.MeooeDag(phi_o, dphi_e);
+
+  pDce = innerProduct(phi_e, dchi_e);
+  pDco = innerProduct(phi_o, dchi_o);
+  cDpe = innerProduct(chi_e, dphi_e);
+  cDpo = innerProduct(chi_o, dphi_o);
+
+  std::cout << GridLogMessage << "e compact " << pDce << " " << cDpe << std::endl;
+  std::cout << GridLogMessage << "o compact " << pDco << " " << cDpo << std::endl;
+
+  std::cout << GridLogMessage << "pDce - conj(cDpo) compact " << pDce - conj(cDpo) << std::endl;
+  std::cout << GridLogMessage << "pDco - conj(cDpe) compact " << pDco - conj(cDpe) << std::endl;
+
   std::cout << GridLogMessage << "==============================================================" << std::endl;
   std::cout << GridLogMessage << "= Test MeeInv Mee = 1   (if csw!=0)                           " << std::endl;
   std::cout << GridLogMessage << "==============================================================" << std::endl;
@@ -169,7 +203,21 @@ int main(int argc, char **argv)
   setCheckerboard(phi, phi_o);
 
   err = phi - chi;
-  std::cout << GridLogMessage << "norm diff   " << norm2(err) << std::endl;
+  std::cout << GridLogMessage << "norm diff " << norm2(err) << std::endl;
+  assert(fabs(norm2(err)) < tolerance);
+
+  Dwc_compact.Mooee(chi_e, src_e);
+  Dwc_compact.MooeeInv(src_e, phi_e);
+
+  Dwc_compact.Mooee(chi_o, src_o);
+  Dwc_compact.MooeeInv(src_o, phi_o);
+
+  setCheckerboard(phi, phi_e);
+  setCheckerboard(phi, phi_o);
+
+  err = phi - chi;
+  std::cout << GridLogMessage << "norm diff compact " << norm2(err) << std::endl;
+  assert(fabs(norm2(err)) < tolerance);
 
   std::cout << GridLogMessage << "==============================================================" << std::endl;
   std::cout << GridLogMessage << "= Test MeeDag MeeInvDag = 1    (if csw!=0)                    " << std::endl;
@@ -188,7 +236,21 @@ int main(int argc, char **argv)
   setCheckerboard(phi, phi_o);
 
   err = phi - chi;
-  std::cout << GridLogMessage << "norm diff   " << norm2(err) << std::endl;
+  std::cout << GridLogMessage << "norm diff " << norm2(err) << std::endl;
+  assert(fabs(norm2(err)) < tolerance);
+
+  Dwc_compact.MooeeDag(chi_e, src_e);
+  Dwc_compact.MooeeInvDag(src_e, phi_e);
+
+  Dwc_compact.MooeeDag(chi_o, src_o);
+  Dwc_compact.MooeeInvDag(src_o, phi_o);
+
+  setCheckerboard(phi, phi_e);
+  setCheckerboard(phi, phi_o);
+
+  err = phi - chi;
+  std::cout << GridLogMessage << "norm diff compact " << norm2(err) << std::endl;
+  assert(fabs(norm2(err)) < tolerance);
 
   std::cout << GridLogMessage << "==============================================================" << std::endl;
   std::cout << GridLogMessage << "= Test MeeInv MeeDag = 1      (if csw!=0)                     " << std::endl;
@@ -207,7 +269,21 @@ int main(int argc, char **argv)
   setCheckerboard(phi, phi_o);
 
   err = phi - chi;
-  std::cout << GridLogMessage << "norm diff   " << norm2(err) << std::endl;
+  std::cout << GridLogMessage << "norm diff " << norm2(err) << std::endl;
+  assert(fabs(norm2(err)) < tolerance);
+
+  Dwc_compact.MooeeDag(chi_e, src_e);
+  Dwc_compact.MooeeInv(src_e, phi_e);
+
+  Dwc_compact.MooeeDag(chi_o, src_o);
+  Dwc_compact.MooeeInv(src_o, phi_o);
+
+  setCheckerboard(phi, phi_e);
+  setCheckerboard(phi, phi_o);
+
+  err = phi - chi;
+  std::cout << GridLogMessage << "norm diff compact " << norm2(err) << std::endl;
+  assert(fabs(norm2(err)) < tolerance);
 
   std::cout << GridLogMessage << "================================================================" << std::endl;
   std::cout << GridLogMessage << "= Testing gauge covariance Clover term with EO preconditioning  " << std::endl;
@@ -249,7 +325,7 @@ int main(int argc, char **argv)
   /////////////////
 
   WilsonCloverFermionR Dwc_prime(U_prime, Grid, RBGrid, mass, csw_r, csw_t, anis, params);
-  Dwc_prime.ImportGauge(U_prime);
+  CompactWilsonCloverFermionR Dwc_compact_prime(U_prime, Grid, RBGrid, mass, csw_r, csw_t, 1.0, anis, params);
 
   tmp = Omega * src;
   pickCheckerboard(Even, src_e, tmp);
@@ -262,7 +338,37 @@ int main(int argc, char **argv)
   setCheckerboard(phi, phi_o);
 
   err = chi - adj(Omega) * phi;
-  std::cout << GridLogMessage << "norm diff   " << norm2(err) << std::endl;
+  std::cout << GridLogMessage << "norm diff " << norm2(err) << std::endl;
+  assert(fabs(norm2(err)) < tolerance);
+
+  chi = Zero();
+  phi = Zero();
+  tmp = Zero();
+  pickCheckerboard(Even, chi_e, chi);
+  pickCheckerboard(Odd, chi_o, chi);
+  pickCheckerboard(Even, phi_e, phi);
+  pickCheckerboard(Odd, phi_o, phi);
+
+  Dwc_compact.Mooee(src_e, chi_e);
+  Dwc_compact.Mooee(src_o, chi_o);
+  setCheckerboard(chi, chi_e);
+  setCheckerboard(chi, chi_o);
+  setCheckerboard(src, src_e);
+  setCheckerboard(src, src_o);
+
+  tmp = Omega * src;
+  pickCheckerboard(Even, src_e, tmp);
+  pickCheckerboard(Odd, src_o, tmp);
+
+  Dwc_compact_prime.Mooee(src_e, phi_e);
+  Dwc_compact_prime.Mooee(src_o, phi_o);
+
+  setCheckerboard(phi, phi_e);
+  setCheckerboard(phi, phi_o);
+
+  err = chi - adj(Omega) * phi;
+  std::cout << GridLogMessage << "norm diff compact " << norm2(err) << std::endl;
+  assert(fabs(norm2(err)) < tolerance);
 
   std::cout << GridLogMessage << "=================================================================" << std::endl;
   std::cout << GridLogMessage << "= Testing gauge covariance Clover term w/o EO preconditioning  " << std::endl;
@@ -272,7 +378,6 @@ int main(int argc, char **argv)
   phi = Zero();
 
   WilsonFermionR Dw(Umu, Grid, RBGrid, mass, params);
-  Dw.ImportGauge(Umu);
 
   Dw.M(src, result);
   Dwc.M(src, chi);
@@ -280,13 +385,24 @@ int main(int argc, char **argv)
   Dwc_prime.M(Omega * src, phi);
 
   WilsonFermionR Dw_prime(U_prime, Grid, RBGrid, mass, params);
-  Dw_prime.ImportGauge(U_prime);
   Dw_prime.M(Omega * src, result2);
 
+  err = result - adj(Omega) * result2;
+  std::cout << GridLogMessage << "norm diff Wilson              " << norm2(err) << std::endl;
+  assert(fabs(norm2(err)) < tolerance);
   err = chi - adj(Omega) * phi;
-  err2 = result - adj(Omega) * result2;
+  std::cout << GridLogMessage << "norm diff WilsonClover        " << norm2(err) << std::endl;
-  std::cout << GridLogMessage << "norm diff Wilson   " << norm2(err) << std::endl;
+  assert(fabs(norm2(err)) < tolerance);
-  std::cout << GridLogMessage << "norm diff WilsonClover  " << norm2(err2) << std::endl;
+
+  chi = Zero();
+  phi = Zero();
+
+  Dwc_compact.M(src, chi);
+  Dwc_compact_prime.M(Omega * src, phi);
+
+  err = chi - adj(Omega) * phi;
+  std::cout << GridLogMessage << "norm diff CompactWilsonClover " << norm2(err) << std::endl;
+  assert(fabs(norm2(err)) < tolerance);
 
   std::cout << GridLogMessage << "==========================================================" << std::endl;
   std::cout << GridLogMessage << "= Testing Mooee(csw=0) Clover to reproduce Mooee Wilson   " << std::endl;
@@ -296,7 +412,6 @@ int main(int argc, char **argv)
   phi = Zero();
   err = Zero();
   WilsonCloverFermionR Dwc_csw0(Umu, Grid, RBGrid, mass, 0.0, 0.0, anis, params); //  <-- Notice: csw=0
-  Dwc_csw0.ImportGauge(Umu);
 
   pickCheckerboard(Even, phi_e, phi);
   pickCheckerboard(Odd, phi_o, phi);
@@ -316,7 +431,34 @@ int main(int argc, char **argv)
   setCheckerboard(src, src_o);
 
   err = chi - phi;
-  std::cout << GridLogMessage << "norm diff  " << norm2(err) << std::endl;
+  std::cout << GridLogMessage << "norm diff " << norm2(err) << std::endl;
+  assert(fabs(norm2(err)) < tolerance);
+
+  chi = Zero();
+  phi = Zero();
+  err = Zero();
+  CompactWilsonCloverFermionR Dwc_compact_csw0(Umu, Grid, RBGrid, mass, 0.0, 0.0, 1.0, anis, params); //  <-- Notice: csw=0
+
+  pickCheckerboard(Even, phi_e, phi);
+  pickCheckerboard(Odd, phi_o, phi);
+  pickCheckerboard(Even, chi_e, chi);
+  pickCheckerboard(Odd, chi_o, chi);
+
+  Dw.Mooee(src_e, chi_e);
+  Dw.Mooee(src_o, chi_o);
+  Dwc_compact_csw0.Mooee(src_e, phi_e);
+  Dwc_compact_csw0.Mooee(src_o, phi_o);
+
+  setCheckerboard(chi, chi_e);
+  setCheckerboard(chi, chi_o);
+  setCheckerboard(phi, phi_e);
+  setCheckerboard(phi, phi_o);
+  setCheckerboard(src, src_e);
+  setCheckerboard(src, src_o);
+
+  err = chi - phi;
+  std::cout << GridLogMessage << "norm diff compact " << norm2(err) << std::endl;
+  assert(fabs(norm2(err)) < tolerance);
 
   std::cout << GridLogMessage << "==========================================================" << std::endl;
   std::cout << GridLogMessage << "= Testing EO operator is equal to the unprec              " << std::endl;
@@ -348,9 +490,41 @@ int main(int argc, char **argv)
   setCheckerboard(phi, phi_o);
 
   err = ref - phi;
-  std::cout << GridLogMessage << "ref (unpreconditioned operator) diff  :" << norm2(ref) << std::endl;
+  std::cout << GridLogMessage << "ref (unpreconditioned operator) diff         : " << norm2(ref) << std::endl;
-  std::cout << GridLogMessage << "phi (EO decomposition)          diff  :" << norm2(phi) << std::endl;
+  std::cout << GridLogMessage << "phi (EO decomposition)          diff         : " << norm2(phi) << std::endl;
-  std::cout << GridLogMessage << "norm diff                             :" << norm2(err) << std::endl;
+  std::cout << GridLogMessage << "norm diff                                    : " << norm2(err) << std::endl;
+  assert(fabs(norm2(err)) < tolerance);
+
+  chi = Zero();
+  phi = Zero();
+  err = Zero();
+
+  pickCheckerboard(Even, phi_e, phi);
+  pickCheckerboard(Odd, phi_o, phi);
+  pickCheckerboard(Even, chi_e, chi);
+  pickCheckerboard(Odd, chi_o, chi);
+
+  // M phi = (Mooee src_e + Meooe src_o , Meooe src_e + Mooee src_o)
+
+  Dwc_compact.M(src, ref); // Reference result from the unpreconditioned operator
+
+  // EO matrix
+  Dwc_compact.Mooee(src_e, chi_e); 
+  Dwc_compact.Mooee(src_o, chi_o);
+  Dwc_compact.Meooe(src_o, phi_e);
+  Dwc_compact.Meooe(src_e, phi_o);
+
+  phi_o += chi_o;
+  phi_e += chi_e;
+
+  setCheckerboard(phi, phi_e);
+  setCheckerboard(phi, phi_o);
+
+  err = ref - phi;
+  std::cout << GridLogMessage << "ref (unpreconditioned operator) diff compact : " << norm2(ref) << std::endl;
+  std::cout << GridLogMessage << "phi (EO decomposition)          diff compact : " << norm2(phi) << std::endl;
+  std::cout << GridLogMessage << "norm diff compact                            : " << norm2(err) << std::endl;
+  assert(fabs(norm2(err)) < tolerance);
 
   Grid_finalize();
 }

tests/core/Test_wilson_conserved_current.cc

@@ -0,0 +1,253 @@
+/*************************************************************************************
+Grid physics library, www.github.com/paboyle/Grid
+
+Source file: ./tests/Test_cayley_cg.cc
+
+Copyright (C) 2022
+
+Author: Peter Boyle <paboyle@ph.ed.ac.uk>
+Author: Fabian Joswig <fabian.joswig@ed.ac.uk>
+
+This program is free software; you can redistribute it and/or modify
+it under the terms of the GNU General Public License as published by
+the Free Software Foundation; either version 2 of the License, or
+(at your option) any later version.
+
+This program is distributed in the hope that it will be useful,
+but WITHOUT ANY WARRANTY; without even the implied warranty of
+MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+GNU General Public License for more details.
+
+You should have received a copy of the GNU General Public License along
+with this program; if not, write to the Free Software Foundation, Inc.,
+51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
+
+See the full license in the file "LICENSE" in the top level distribution directory
+*************************************************************************************/
+/*  END LEGAL */
+#include <Grid/Grid.h>
+
+using namespace std;
+using namespace Grid;
+
+
+template<class What>
+void  TestConserved(What & Dw,
+		    LatticeGaugeField &Umu,
+		    GridCartesian         * UGrid,	       GridRedBlackCartesian * UrbGrid,
+		    GridParallelRNG *RNG4);
+
+  Gamma::Algebra Gmu [] = {
+    Gamma::Algebra::GammaX,
+    Gamma::Algebra::GammaY,
+    Gamma::Algebra::GammaZ,
+    Gamma::Algebra::GammaT,
+    Gamma::Algebra::Gamma5
+  };
+
+int main (int argc, char ** argv)
+{
+  Grid_init(&argc,&argv);
+
+  int threads = GridThread::GetThreads();
+  std::cout<<GridLogMessage << "Grid is setup to use "<<threads<<" threads"<<std::endl;
+
+  GridCartesian         * UGrid   = SpaceTimeGrid::makeFourDimGrid(GridDefaultLatt(),
+								   GridDefaultSimd(Nd,vComplex::Nsimd()),
+								   GridDefaultMpi());
+  GridRedBlackCartesian * UrbGrid = SpaceTimeGrid::makeFourDimRedBlackGrid(UGrid);
+
+  std::vector<int> seeds5({5,6,7,8});
+  GridParallelRNG          RNG4(UGrid);
+  std::vector<int> seeds4({1,2,3,4}); RNG4.SeedFixedIntegers(seeds4);
+
+  LatticeGaugeField Umu(UGrid);
+  if( argc > 1 && argv[1][0] != '-' )
+  {
+    std::cout<<GridLogMessage <<"Loading configuration from "<<argv[1]<<std::endl;
+    FieldMetaData header;
+    NerscIO::readConfiguration(Umu, header, argv[1]);
+  }
+  else
+  {
+    std::cout<<GridLogMessage <<"Using hot configuration"<<std::endl;
+    SU<Nc>::HotConfiguration(RNG4,Umu);
+  }
+
+  typename WilsonCloverFermionR::ImplParams params;
+  WilsonAnisotropyCoefficients anis;
+  RealD mass = 0.1;
+  RealD csw_r = 1.0;
+  RealD csw_t = 1.0;
+
+  std::cout<<GridLogMessage <<"=================================="<<std::endl;
+  std::cout<<GridLogMessage <<"WilsonFermion test"<<std::endl;
+  std::cout<<GridLogMessage <<"=================================="<<std::endl;
+  WilsonFermionR Dw(Umu,*UGrid,*UrbGrid,mass,params);
+  TestConserved<WilsonFermionR>(Dw,Umu,UGrid,UrbGrid,&RNG4);
+
+  std::cout<<GridLogMessage <<"=================================="<<std::endl;
+  std::cout<<GridLogMessage <<"WilsonCloverFermion test"<<std::endl;
+  std::cout<<GridLogMessage <<"=================================="<<std::endl;
+  WilsonCloverFermionR Dwc(Umu, *UGrid, *UrbGrid, mass, csw_r, csw_t, anis, params);
+  TestConserved<WilsonCloverFermionR>(Dwc,Umu,UGrid,UrbGrid,&RNG4);
+
+  std::cout<<GridLogMessage <<"=================================="<<std::endl;
+  std::cout<<GridLogMessage <<"CompactWilsonCloverFermion test"<<std::endl;
+  std::cout<<GridLogMessage <<"=================================="<<std::endl;
+  CompactWilsonCloverFermionR Dwcc(Umu, *UGrid, *UrbGrid, mass, csw_r, csw_t, 1.0, anis, params);
+  TestConserved<CompactWilsonCloverFermionR>(Dwcc,Umu,UGrid,UrbGrid,&RNG4);
+
+  std::cout<<GridLogMessage <<"=================================="<<std::endl;
+  std::cout<<GridLogMessage <<"WilsonExpCloverFermion test"<<std::endl;
+  std::cout<<GridLogMessage <<"=================================="<<std::endl;
+  WilsonExpCloverFermionR Dewc(Umu, *UGrid, *UrbGrid, mass, csw_r, csw_t, anis, params);
+  TestConserved<WilsonExpCloverFermionR>(Dewc,Umu,UGrid,UrbGrid,&RNG4);
+
+  std::cout<<GridLogMessage <<"=================================="<<std::endl;
+  std::cout<<GridLogMessage <<"CompactWilsonExpCloverFermion test"<<std::endl;
+  std::cout<<GridLogMessage <<"=================================="<<std::endl;
+  CompactWilsonExpCloverFermionR Dewcc(Umu, *UGrid, *UrbGrid, mass, csw_r, csw_t, 1.0, anis, params);
+  TestConserved<CompactWilsonExpCloverFermionR>(Dewcc,Umu,UGrid,UrbGrid,&RNG4);
+
+  Grid_finalize();
+}
+
+
+
+template<class Action>
+void  TestConserved(Action & Dw,
+		    LatticeGaugeField &Umu,
+		    GridCartesian         * UGrid,	       GridRedBlackCartesian * UrbGrid,
+		    GridParallelRNG *RNG4)
+{
+  LatticePropagator phys_src(UGrid);
+  LatticePropagator seqsrc(UGrid);
+  LatticePropagator prop4(UGrid);
+  LatticePropagator Vector_mu(UGrid);
+  LatticeComplex    SV (UGrid);
+  LatticeComplex    VV (UGrid);
+  LatticePropagator seqprop(UGrid);
+
+  SpinColourMatrix kronecker; kronecker=1.0;
+  Coordinate coor({0,0,0,0});
+  phys_src=Zero();
+  pokeSite(kronecker,phys_src,coor);
+
+  ConjugateGradient<LatticeFermion> CG(1.0e-16,100000);
+  SchurRedBlackDiagTwoSolve<LatticeFermion> schur(CG);
+  ZeroGuesser<LatticeFermion> zpg;
+  for(int s=0;s<Nd;s++){
+    for(int c=0;c<Nc;c++){
+      LatticeFermion src4  (UGrid);
+      PropToFerm<Action>(src4,phys_src,s,c);
+
+      LatticeFermion result4(UGrid); result4=Zero();
+      schur(Dw,src4,result4,zpg);
+      std::cout<<GridLogMessage<<"spin "<<s<<" color "<<c<<" norm2(sourc4d) "<<norm2(src4)
+               <<" norm2(result4d) "<<norm2(result4)<<std::endl;
+      FermToProp<Action>(prop4,result4,s,c);
+    }
+  }
+
+  auto curr = Current::Vector;
+  const int mu_J=0;
+  const int t_J=0;
+
+  LatticeComplex    ph (UGrid); ph=1.0;
+
+  Dw.SeqConservedCurrent(prop4,
+			   seqsrc,
+			   phys_src,
+			   curr,
+			   mu_J,
+			   t_J,
+			   t_J,// whole lattice
+			   ph);
+
+  for(int s=0;s<Nd;s++){
+    for(int c=0;c<Nc;c++){
+
+      LatticeFermion src4  (UGrid);
+      PropToFerm<Action>(src4,seqsrc,s,c);
+
+      LatticeFermion result4(UGrid); result4=Zero();
+      schur(Dw,src4,result4,zpg);
+
+      FermToProp<Action>(seqprop,result4,s,c);
+    }
+  }
+
+  Gamma g5(Gamma::Algebra::Gamma5);
+  Gamma gT(Gamma::Algebra::GammaT);
+
+  std::vector<TComplex> sumSV;
+  std::vector<TComplex> sumVV;
+
+  Dw.ContractConservedCurrent(prop4,prop4,Vector_mu,phys_src,Current::Vector,Tdir);
+
+  SV       = trace(Vector_mu);        // Scalar-Vector conserved current
+  VV       = trace(gT*Vector_mu);     // (local) Vector-Vector conserved current
+
+  // Spatial sum
+  sliceSum(SV,sumSV,Tdir);
+  sliceSum(VV,sumVV,Tdir);
+
+  const int Nt{static_cast<int>(sumSV.size())};
+
+  std::cout<<GridLogMessage<<"Vector Ward identity by timeslice (~ 0)"<<std::endl;
+  for(int t=0;t<Nt;t++){
+    std::cout<<GridLogMessage <<" t "<<t<<" SV "<<real(TensorRemove(sumSV[t]))<<" VV "<<real(TensorRemove(sumVV[t]))<<std::endl;
+    assert(abs(real(TensorRemove(sumSV[t]))) < 1e-10);
+    assert(abs(real(TensorRemove(sumVV[t]))) < 1e-2);
+  }
+
+  ///////////////////////////////
+  // 3pt vs 2pt check
+  ///////////////////////////////
+  {
+    Gamma::Algebra        gA = Gamma::Algebra::Identity;
+    Gamma                 g(gA);
+
+    LatticePropagator cur(UGrid);
+    LatticePropagator tmp(UGrid);
+    LatticeComplex c(UGrid);
+    SpinColourMatrix qSite;
+    peekSite(qSite, seqprop, coor);
+
+    Complex               test_S, test_V, check_S, check_V;
+
+    std::vector<TComplex> check_buf;
+
+    test_S = trace(qSite*g);
+    test_V = trace(qSite*g*Gamma::gmu[mu_J]);
+
+    Dw.ContractConservedCurrent(prop4,prop4,cur,phys_src,curr,mu_J);
+
+    c = trace(cur*g);
+    sliceSum(c, check_buf, Tp);
+    check_S = TensorRemove(check_buf[t_J]);
+
+    auto gmu=Gamma::gmu[mu_J];
+    c = trace(cur*g*gmu);
+    sliceSum(c, check_buf, Tp);
+    check_V = TensorRemove(check_buf[t_J]);
+
+
+    std::cout<<GridLogMessage << std::setprecision(14)<<"Test S  = " << abs(test_S)   << std::endl;
+    std::cout<<GridLogMessage << "Test V  = " << abs(test_V) << std::endl;
+    std::cout<<GridLogMessage << "Check S = " << abs(check_S) << std::endl;
+    std::cout<<GridLogMessage << "Check V = " << abs(check_V) << std::endl;
+
+    // Check difference = 0
+    check_S = check_S - test_S;
+    check_V = check_V - test_V;
+
+    std::cout<<GridLogMessage << "Consistency check for sequential conserved " <<std::endl;
+    std::cout<<GridLogMessage << "Diff S  = " << abs(check_S) << std::endl;
+    assert(abs(check_S) < 1e-8);
+    std::cout<<GridLogMessage << "Diff V  = " << abs(check_V) << std::endl;
+    assert(abs(check_V) < 1e-8);
+  }
+
+}

tests/core/Test_wilson_exp_clover.cc

@@ -0,0 +1,530 @@
+/*************************************************************************************
+
+    Grid physics library, www.github.com/paboyle/Grid 
+
+    Source file: ./tests/core/Test_wilson_exp_clover.cc
+
+    Copyright (C) 2022
+
+    Author: Guido Cossu <guido.cossu@ed.ac.uk>
+            Fabian Joswig <fabian.joswig@ed.ac.uk>
+
+    This program is free software; you can redistribute it and/or modify
+    it under the terms of the GNU General Public License as published by
+    the Free Software Foundation; either version 2 of the License, or
+    (at your option) any later version.
+
+    This program is distributed in the hope that it will be useful,
+    but WITHOUT ANY WARRANTY; without even the implied warranty of
+    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+    GNU General Public License for more details.
+
+    You should have received a copy of the GNU General Public License along
+    with this program; if not, write to the Free Software Foundation, Inc.,
+    51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
+
+    See the full license in the file "LICENSE" in the top level distribution directory
+    *************************************************************************************/
+/*  END LEGAL */
+#include <Grid/Grid.h>
+
+using namespace std;
+using namespace Grid;
+
+int main(int argc, char **argv)
+{
+  Grid_init(&argc, &argv);
+
+  auto latt_size = GridDefaultLatt();
+  auto simd_layout = GridDefaultSimd(Nd, vComplex::Nsimd());
+  auto mpi_layout = GridDefaultMpi();
+  GridCartesian Grid(latt_size, simd_layout, mpi_layout);
+  GridRedBlackCartesian RBGrid(&Grid);
+
+  int threads = GridThread::GetThreads();
+  std::cout << GridLogMessage << "Grid is setup to use " << threads << " threads" << std::endl;
+  std::cout << GridLogMessage << "Grid floating point word size is REALF" << sizeof(RealF) << std::endl;
+  std::cout << GridLogMessage << "Grid floating point word size is REALD" << sizeof(RealD) << std::endl;
+  std::cout << GridLogMessage << "Grid floating point word size is REAL" << sizeof(Real) << std::endl;
+
+  std::vector<int> seeds({1, 2, 3, 4});
+  GridParallelRNG pRNG(&Grid);
+  pRNG.SeedFixedIntegers(seeds);
+  //  pRNG.SeedFixedIntegers(std::vector<int>({45,12,81,9});
+
+  typedef typename WilsonExpCloverFermionR::FermionField FermionField;
+  typename WilsonExpCloverFermionR::ImplParams params;
+  WilsonAnisotropyCoefficients anis;
+
+  FermionField src(&Grid);
+  random(pRNG, src);
+  FermionField result(&Grid);
+  result = Zero();
+  FermionField result2(&Grid);
+  result2 = Zero();
+  FermionField ref(&Grid);
+  ref = Zero();
+  FermionField tmp(&Grid);
+  tmp = Zero();
+  FermionField err(&Grid);
+  err = Zero();
+  FermionField phi(&Grid);
+  random(pRNG, phi);
+  FermionField chi(&Grid);
+  random(pRNG, chi);
+  LatticeGaugeField Umu(&Grid);
+  SU<Nc>::HotConfiguration(pRNG, Umu);
+  std::vector<LatticeColourMatrix> U(4, &Grid);
+
+  double tolerance = 1e-4;
+
+  double volume = 1;
+  for (int mu = 0; mu < Nd; mu++)
+  {
+    volume = volume * latt_size[mu];
+  }
+
+  RealD mass = 0.1;
+  RealD csw_r = 1.0;
+  RealD csw_t = 1.0;
+
+  WilsonExpCloverFermionR Dwc(Umu, Grid, RBGrid, mass, csw_r, csw_t, anis, params);
+  CompactWilsonExpCloverFermionR Dwc_compact(Umu, Grid, RBGrid, mass, csw_r, csw_t, 1.0, anis, params);
+
+  std::cout << GridLogMessage << "==========================================================" << std::endl;
+  std::cout << GridLogMessage << "= Testing that Deo + Doe = Dunprec " << std::endl;
+  std::cout << GridLogMessage << "==========================================================" << std::endl;
+
+  FermionField src_e(&RBGrid);
+  FermionField src_o(&RBGrid);
+  FermionField r_e(&RBGrid);
+  FermionField r_o(&RBGrid);
+  FermionField r_eo(&Grid);
+  pickCheckerboard(Even, src_e, src);
+  pickCheckerboard(Odd, src_o, src);
+
+  Dwc.Meooe(src_e, r_o);
+  std::cout << GridLogMessage << "Applied Meo" << std::endl;
+  Dwc.Meooe(src_o, r_e);
+  std::cout << GridLogMessage << "Applied Moe" << std::endl;
+  Dwc.Dhop(src, ref, DaggerNo);
+
+  setCheckerboard(r_eo, r_o);
+  setCheckerboard(r_eo, r_e);
+
+  err = ref - r_eo;
+  std::cout << GridLogMessage << "EO norm diff\t" << norm2(err) << " (" << norm2(ref) << " - " << norm2(r_eo) << ")" << std::endl;
+  assert(fabs(norm2(err)) < tolerance);
+
+
+
+  Dwc_compact.Meooe(src_e, r_o);
+  std::cout << GridLogMessage << "Applied Meo" << std::endl;
+  Dwc_compact.Meooe(src_o, r_e);
+  std::cout << GridLogMessage << "Applied Moe" << std::endl;
+  Dwc_compact.Dhop(src, ref, DaggerNo);
+
+  setCheckerboard(r_eo, r_o);
+  setCheckerboard(r_eo, r_e);
+
+  err = ref - r_eo;
+  std::cout << GridLogMessage << "EO norm diff compact\t" << norm2(err) << " (" << norm2(ref) << " - " << norm2(r_eo) << ")" << std::endl;
+  assert(fabs(norm2(err)) < tolerance);
+
+
+  std::cout << GridLogMessage << "==============================================================" << std::endl;
+  std::cout << GridLogMessage << "= Test Ddagger is the dagger of D by requiring                " << std::endl;
+  std::cout << GridLogMessage << "=  < phi | Deo | chi > * = < chi | Deo^dag| phi>  " << std::endl;
+  std::cout << GridLogMessage << "==============================================================" << std::endl;
+
+  FermionField chi_e(&RBGrid);
+  FermionField chi_o(&RBGrid);
+
+  FermionField dchi_e(&RBGrid);
+  FermionField dchi_o(&RBGrid);
+
+  FermionField phi_e(&RBGrid);
+  FermionField phi_o(&RBGrid);
+
+  FermionField dphi_e(&RBGrid);
+  FermionField dphi_o(&RBGrid);
+
+  pickCheckerboard(Even, chi_e, chi);
+  pickCheckerboard(Odd, chi_o, chi);
+  pickCheckerboard(Even, phi_e, phi);
+  pickCheckerboard(Odd, phi_o, phi);
+
+  Dwc.Meooe(chi_e, dchi_o);
+  Dwc.Meooe(chi_o, dchi_e);
+  Dwc.MeooeDag(phi_e, dphi_o);
+  Dwc.MeooeDag(phi_o, dphi_e);
+
+  ComplexD pDce = innerProduct(phi_e, dchi_e);
+  ComplexD pDco = innerProduct(phi_o, dchi_o);
+  ComplexD cDpe = innerProduct(chi_e, dphi_e);
+  ComplexD cDpo = innerProduct(chi_o, dphi_o);
+
+  std::cout << GridLogMessage << "e " << pDce << " " << cDpe << std::endl;
+  std::cout << GridLogMessage << "o " << pDco << " " << cDpo << std::endl;
+
+  std::cout << GridLogMessage << "pDce - conj(cDpo) " << pDce - conj(cDpo) << std::endl;
+  std::cout << GridLogMessage << "pDco - conj(cDpe) " << pDco - conj(cDpe) << std::endl;
+
+  Dwc_compact.Meooe(chi_e, dchi_o);
+  Dwc_compact.Meooe(chi_o, dchi_e);
+  Dwc_compact.MeooeDag(phi_e, dphi_o);
+  Dwc_compact.MeooeDag(phi_o, dphi_e);
+
+  pDce = innerProduct(phi_e, dchi_e);
+  pDco = innerProduct(phi_o, dchi_o);
+  cDpe = innerProduct(chi_e, dphi_e);
+  cDpo = innerProduct(chi_o, dphi_o);
+
+  std::cout << GridLogMessage << "e compact " << pDce << " " << cDpe << std::endl;
+  std::cout << GridLogMessage << "o compact " << pDco << " " << cDpo << std::endl;
+
+  std::cout << GridLogMessage << "pDce - conj(cDpo) compact " << pDce - conj(cDpo) << std::endl;
+  std::cout << GridLogMessage << "pDco - conj(cDpe) compact " << pDco - conj(cDpe) << std::endl;
+
+  std::cout << GridLogMessage << "==============================================================" << std::endl;
+  std::cout << GridLogMessage << "= Test MeeInv Mee = 1   (if csw!=0)                           " << std::endl;
+  std::cout << GridLogMessage << "==============================================================" << std::endl;
+
+  pickCheckerboard(Even, chi_e, chi);
+  pickCheckerboard(Odd, chi_o, chi);
+
+  Dwc.Mooee(chi_e, src_e);
+  Dwc.MooeeInv(src_e, phi_e);
+
+  Dwc.Mooee(chi_o, src_o);
+  Dwc.MooeeInv(src_o, phi_o);
+
+  setCheckerboard(phi, phi_e);
+  setCheckerboard(phi, phi_o);
+
+  err = phi - chi;
+  std::cout << GridLogMessage << "norm diff " << norm2(err) << std::endl;
+  assert(fabs(norm2(err)) < tolerance);
+
+  Dwc_compact.Mooee(chi_e, src_e);
+  Dwc_compact.MooeeInv(src_e, phi_e);
+
+  Dwc_compact.Mooee(chi_o, src_o);
+  Dwc_compact.MooeeInv(src_o, phi_o);
+
+  setCheckerboard(phi, phi_e);
+  setCheckerboard(phi, phi_o);
+
+  err = phi - chi;
+  std::cout << GridLogMessage << "norm diff compact " << norm2(err) << std::endl;
+  assert(fabs(norm2(err)) < tolerance);
+
+  std::cout << GridLogMessage << "==============================================================" << std::endl;
+  std::cout << GridLogMessage << "= Test MeeDag MeeInvDag = 1    (if csw!=0)                    " << std::endl;
+  std::cout << GridLogMessage << "==============================================================" << std::endl;
+
+  pickCheckerboard(Even, chi_e, chi);
+  pickCheckerboard(Odd, chi_o, chi);
+
+  Dwc.MooeeDag(chi_e, src_e);
+  Dwc.MooeeInvDag(src_e, phi_e);
+
+  Dwc.MooeeDag(chi_o, src_o);
+  Dwc.MooeeInvDag(src_o, phi_o);
+
+  setCheckerboard(phi, phi_e);
+  setCheckerboard(phi, phi_o);
+
+  err = phi - chi;
+  std::cout << GridLogMessage << "norm diff " << norm2(err) << std::endl;
+  assert(fabs(norm2(err)) < tolerance);
+
+  Dwc_compact.MooeeDag(chi_e, src_e);
+  Dwc_compact.MooeeInvDag(src_e, phi_e);
+
+  Dwc_compact.MooeeDag(chi_o, src_o);
+  Dwc_compact.MooeeInvDag(src_o, phi_o);
+
+  setCheckerboard(phi, phi_e);
+  setCheckerboard(phi, phi_o);
+
+  err = phi - chi;
+  std::cout << GridLogMessage << "norm diff compact " << norm2(err) << std::endl;
+  assert(fabs(norm2(err)) < tolerance);
+
+  std::cout << GridLogMessage << "==============================================================" << std::endl;
+  std::cout << GridLogMessage << "= Test MeeInv MeeDag = 1      (if csw!=0)                     " << std::endl;
+  std::cout << GridLogMessage << "==============================================================" << std::endl;
+
+  pickCheckerboard(Even, chi_e, chi);
+  pickCheckerboard(Odd, chi_o, chi);
+
+  Dwc.MooeeDag(chi_e, src_e);
+  Dwc.MooeeInv(src_e, phi_e);
+
+  Dwc.MooeeDag(chi_o, src_o);
+  Dwc.MooeeInv(src_o, phi_o);
+
+  setCheckerboard(phi, phi_e);
+  setCheckerboard(phi, phi_o);
+
+  err = phi - chi;
+  std::cout << GridLogMessage << "norm diff " << norm2(err) << std::endl;
+  assert(fabs(norm2(err)) < tolerance);
+
+  Dwc_compact.MooeeDag(chi_e, src_e);
+  Dwc_compact.MooeeInv(src_e, phi_e);
+
+  Dwc_compact.MooeeDag(chi_o, src_o);
+  Dwc_compact.MooeeInv(src_o, phi_o);
+
+  setCheckerboard(phi, phi_e);
+  setCheckerboard(phi, phi_o);
+
+  err = phi - chi;
+  std::cout << GridLogMessage << "norm diff compact " << norm2(err) << std::endl;
+  assert(fabs(norm2(err)) < tolerance);
+
+  std::cout << GridLogMessage << "================================================================" << std::endl;
+  std::cout << GridLogMessage << "= Testing gauge covariance Clover term with EO preconditioning  " << std::endl;
+  std::cout << GridLogMessage << "================================================================" << std::endl;
+
+  chi = Zero();
+  phi = Zero();
+  tmp = Zero();
+  pickCheckerboard(Even, chi_e, chi);
+  pickCheckerboard(Odd, chi_o, chi);
+  pickCheckerboard(Even, phi_e, phi);
+  pickCheckerboard(Odd, phi_o, phi);
+
+  Dwc.Mooee(src_e, chi_e);
+  Dwc.Mooee(src_o, chi_o);
+  setCheckerboard(chi, chi_e);
+  setCheckerboard(chi, chi_o);
+  setCheckerboard(src, src_e);
+  setCheckerboard(src, src_o);
+
+  ////////////////////// Gauge Transformation
+  std::vector<int> seeds2({5, 6, 7, 8});
+  GridParallelRNG pRNG2(&Grid);
+  pRNG2.SeedFixedIntegers(seeds2);
+  LatticeColourMatrix Omega(&Grid);
+  LatticeColourMatrix ShiftedOmega(&Grid);
+  LatticeGaugeField U_prime(&Grid);
+  U_prime = Zero();
+  LatticeColourMatrix U_prime_mu(&Grid);
+  U_prime_mu = Zero();
+  SU<Nc>::LieRandomize(pRNG2, Omega, 1.0);
+  for (int mu = 0; mu < Nd; mu++)
+  {
+    U[mu] = peekLorentz(Umu, mu);
+    ShiftedOmega = Cshift(Omega, mu, 1);
+    U_prime_mu = Omega * U[mu] * adj(ShiftedOmega);
+    pokeLorentz(U_prime, U_prime_mu, mu);
+  }
+  /////////////////
+
+  WilsonExpCloverFermionR Dwc_prime(U_prime, Grid, RBGrid, mass, csw_r, csw_t, anis, params);
+  CompactWilsonExpCloverFermionR Dwc_compact_prime(U_prime, Grid, RBGrid, mass, csw_r, csw_t, 1.0, anis, params);
+
+  tmp = Omega * src;
+  pickCheckerboard(Even, src_e, tmp);
+  pickCheckerboard(Odd, src_o, tmp);
+
+  Dwc_prime.Mooee(src_e, phi_e);
+  Dwc_prime.Mooee(src_o, phi_o);
+
+  setCheckerboard(phi, phi_e);
+  setCheckerboard(phi, phi_o);
+
+  err = chi - adj(Omega) * phi;
+  std::cout << GridLogMessage << "norm diff " << norm2(err) << std::endl;
+  assert(fabs(norm2(err)) < tolerance);
+
+  chi = Zero();
+  phi = Zero();
+  tmp = Zero();
+  pickCheckerboard(Even, chi_e, chi);
+  pickCheckerboard(Odd, chi_o, chi);
+  pickCheckerboard(Even, phi_e, phi);
+  pickCheckerboard(Odd, phi_o, phi);
+
+  Dwc_compact.Mooee(src_e, chi_e);
+  Dwc_compact.Mooee(src_o, chi_o);
+  setCheckerboard(chi, chi_e);
+  setCheckerboard(chi, chi_o);
+  setCheckerboard(src, src_e);
+  setCheckerboard(src, src_o);
+
+  tmp = Omega * src;
+  pickCheckerboard(Even, src_e, tmp);
+  pickCheckerboard(Odd, src_o, tmp);
+
+  Dwc_compact_prime.Mooee(src_e, phi_e);
+  Dwc_compact_prime.Mooee(src_o, phi_o);
+
+  setCheckerboard(phi, phi_e);
+  setCheckerboard(phi, phi_o);
+
+  err = chi - adj(Omega) * phi;
+  std::cout << GridLogMessage << "norm diff compact " << norm2(err) << std::endl;
+  assert(fabs(norm2(err)) < tolerance);
+
+  std::cout << GridLogMessage << "=================================================================" << std::endl;
+  std::cout << GridLogMessage << "= Testing gauge covariance Clover term w/o EO preconditioning  " << std::endl;
+  std::cout << GridLogMessage << "================================================================" << std::endl;
+
+  chi = Zero();
+  phi = Zero();
+
+  WilsonFermionR Dw(Umu, Grid, RBGrid, mass, params);
+
+  Dw.M(src, result);
+  Dwc.M(src, chi);
+
+  Dwc_prime.M(Omega * src, phi);
+
+  WilsonFermionR Dw_prime(U_prime, Grid, RBGrid, mass, params);
+  Dw_prime.M(Omega * src, result2);
+
+  err = result - adj(Omega) * result2;
+  std::cout << GridLogMessage << "norm diff Wilson                 " << norm2(err) << std::endl;
+  assert(fabs(norm2(err)) < tolerance);
+  err = chi - adj(Omega) * phi;
+  std::cout << GridLogMessage << "norm diff WilsonExpClover        " << norm2(err) << std::endl;
+  assert(fabs(norm2(err)) < tolerance);
+
+  chi = Zero();
+  phi = Zero();
+
+  Dwc_compact.M(src, chi);
+  Dwc_compact_prime.M(Omega * src, phi);
+
+  err = chi - adj(Omega) * phi;
+  std::cout << GridLogMessage << "norm diff CompactWilsonExpClover " << norm2(err) << std::endl;
+  assert(fabs(norm2(err)) < tolerance);
+
+  std::cout << GridLogMessage << "==========================================================" << std::endl;
+  std::cout << GridLogMessage << "= Testing Mooee(csw=0) Clover to reproduce Mooee Wilson   " << std::endl;
+  std::cout << GridLogMessage << "==========================================================" << std::endl;
+
+  chi = Zero();
+  phi = Zero();
+  err = Zero();
+  WilsonExpCloverFermionR Dwc_csw0(Umu, Grid, RBGrid, mass, 0.0, 0.0, anis, params); //  <-- Notice: csw=0
+
+  pickCheckerboard(Even, phi_e, phi);
+  pickCheckerboard(Odd, phi_o, phi);
+  pickCheckerboard(Even, chi_e, chi);
+  pickCheckerboard(Odd, chi_o, chi);
+
+  Dw.Mooee(src_e, chi_e);
+  Dw.Mooee(src_o, chi_o);
+  Dwc_csw0.Mooee(src_e, phi_e);
+  Dwc_csw0.Mooee(src_o, phi_o);
+
+  setCheckerboard(chi, chi_e);
+  setCheckerboard(chi, chi_o);
+  setCheckerboard(phi, phi_e);
+  setCheckerboard(phi, phi_o);
+  setCheckerboard(src, src_e);
+  setCheckerboard(src, src_o);
+
+  err = chi - phi;
+  std::cout << GridLogMessage << "norm diff " << norm2(err) << std::endl;
+  assert(fabs(norm2(err)) < tolerance);
+
+  chi = Zero();
+  phi = Zero();
+  err = Zero();
+  CompactWilsonExpCloverFermionR Dwc_compact_csw0(Umu, Grid, RBGrid, mass, 0.0, 0.0, 1.0, anis, params); //  <-- Notice: csw=0
+
+  pickCheckerboard(Even, phi_e, phi);
+  pickCheckerboard(Odd, phi_o, phi);
+  pickCheckerboard(Even, chi_e, chi);
+  pickCheckerboard(Odd, chi_o, chi);
+
+  Dw.Mooee(src_e, chi_e);
+  Dw.Mooee(src_o, chi_o);
+  Dwc_compact_csw0.Mooee(src_e, phi_e);
+  Dwc_compact_csw0.Mooee(src_o, phi_o);
+
+  setCheckerboard(chi, chi_e);
+  setCheckerboard(chi, chi_o);
+  setCheckerboard(phi, phi_e);
+  setCheckerboard(phi, phi_o);
+  setCheckerboard(src, src_e);
+  setCheckerboard(src, src_o);
+
+  err = chi - phi;
+  std::cout << GridLogMessage << "norm diff compact " << norm2(err) << std::endl;
+  assert(fabs(norm2(err)) < tolerance);
+
+  std::cout << GridLogMessage << "==========================================================" << std::endl;
+  std::cout << GridLogMessage << "= Testing EO operator is equal to the unprec              " << std::endl;
+  std::cout << GridLogMessage << "==========================================================" << std::endl;
+
+  chi = Zero();
+  phi = Zero();
+  err = Zero();
+
+  pickCheckerboard(Even, phi_e, phi);
+  pickCheckerboard(Odd, phi_o, phi);
+  pickCheckerboard(Even, chi_e, chi);
+  pickCheckerboard(Odd, chi_o, chi);
+
+  // M phi = (Mooee src_e + Meooe src_o , Meooe src_e + Mooee src_o)
+
+  Dwc.M(src, ref); // Reference result from the unpreconditioned operator
+
+  // EO matrix
+  Dwc.Mooee(src_e, chi_e); 
+  Dwc.Mooee(src_o, chi_o);
+  Dwc.Meooe(src_o, phi_e);
+  Dwc.Meooe(src_e, phi_o);
+
+  phi_o += chi_o;
+  phi_e += chi_e;
+
+  setCheckerboard(phi, phi_e);
+  setCheckerboard(phi, phi_o);
+
+  err = ref - phi;
+  std::cout << GridLogMessage << "ref (unpreconditioned operator) diff         : " << norm2(ref) << std::endl;
+  std::cout << GridLogMessage << "phi (EO decomposition)          diff         : " << norm2(phi) << std::endl;
+  std::cout << GridLogMessage << "norm diff                                    : " << norm2(err) << std::endl;
+  assert(fabs(norm2(err)) < tolerance);
+
+  chi = Zero();
+  phi = Zero();
+  err = Zero();
+
+  pickCheckerboard(Even, phi_e, phi);
+  pickCheckerboard(Odd, phi_o, phi);
+  pickCheckerboard(Even, chi_e, chi);
+  pickCheckerboard(Odd, chi_o, chi);
+
+  // M phi = (Mooee src_e + Meooe src_o , Meooe src_e + Mooee src_o)
+
+  Dwc_compact.M(src, ref); // Reference result from the unpreconditioned operator
+
+  // EO matrix
+  Dwc_compact.Mooee(src_e, chi_e); 
+  Dwc_compact.Mooee(src_o, chi_o);
+  Dwc_compact.Meooe(src_o, phi_e);
+  Dwc_compact.Meooe(src_e, phi_o);
+
+  phi_o += chi_o;
+  phi_e += chi_e;
+
+  setCheckerboard(phi, phi_e);
+  setCheckerboard(phi, phi_o);
+
+  err = ref - phi;
+  std::cout << GridLogMessage << "ref (unpreconditioned operator) diff compact : " << norm2(ref) << std::endl;
+  std::cout << GridLogMessage << "phi (EO decomposition)          diff compact : " << norm2(phi) << std::endl;
+  std::cout << GridLogMessage << "norm diff compact                            : " << norm2(err) << std::endl;
+  assert(fabs(norm2(err)) < tolerance);
+
+  Grid_finalize();
+}

tests/hmc/Test_hmc_ScalarActionNxN.cc

@@ -132,8 +132,8 @@ int main(int argc, char **argv) {
 
   // Checkpointer definition
   CheckpointerParameters CPparams(Reader);
-  //TheHMC.Resources.LoadBinaryCheckpointer(CPparams);
+  TheHMC.Resources.LoadBinaryCheckpointer(CPparams);
-  TheHMC.Resources.LoadScidacCheckpointer(CPparams, SPar);
+  //TheHMC.Resources.LoadScidacCheckpointer(CPparams, SPar); this breaks for compilation without lime
 
   RNGModuleParameters RNGpar(Reader);
   TheHMC.Resources.SetRNGSeeds(RNGpar);